Invoking: getsize seqnotcut_memechip_out/seq-not-cut.fa 1> $metrics Finished invoke: name: count_seqs status: 0 time: 0.678603 Invoking: fasta-most -min 50 < seqnotcut_memechip_out/seq-not-cut.fa 1> $metrics Finished invoke: name: most_seqs status: 0 time: 0.311481 Invoking: fasta-center -dna -len 100 < seqnotcut_memechip_out/seq-not-cut.fa 1> seqnotcut_memechip_out/seqs-centered Finished invoke: name: center_seqs status: 0 time: 0.696848 Invoking: fasta-shuffle-letters seqnotcut_memechip_out/seqs-centered seqnotcut_memechip_out/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1 Finished invoke: name: shuffle_seqs status: 0 time: 0.631709 Invoking: fasta-subsample seqnotcut_memechip_out/seqs-centered 600 -rest seqnotcut_memechip_out/seqs-discarded -seed 1 1> seqnotcut_memechip_out/seqs-sampled Finished invoke: name: sample_seqs status: 0 time: 0.762574 Invoking: fasta-get-markov -nostatus -nosummary -dna -m 1 seqnotcut_memechip_out/seq-not-cut.fa seqnotcut_memechip_out/background Finished invoke: name: bg status: 0 time: 0.118388 Invoking: meme seqnotcut_memechip_out/seqs-sampled -oc seqnotcut_memechip_out/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile seqnotcut_memechip_out/background -dna -revcomp -nostatus Finished invoke: name: meme status: 0 time: 831.637725 Invoking: dreme -v 1 -oc seqnotcut_memechip_out/dreme_out -png -dna -p seqnotcut_memechip_out/seqs-centered -n seqnotcut_memechip_out/seqs-shuffled Finished invoke: name: dreme status: 0 time: 4463.666672 Invoking: centrimo -seqlen 210 -verbosity 1 -oc seqnotcut_memechip_out/centrimo_out -bfile seqnotcut_memechip_out/background seqnotcut_memechip_out/seq-not-cut.fa seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/dreme_out/dreme.xml Finished invoke: name: centrimo status: 0 time: 4.392587 Invoking: tomtom -verbosity 1 -text -thresh 0.1 seqnotcut_memechip_out/combined.meme seqnotcut_memechip_out/combined.meme 1> seqnotcut_memechip_out/motif_alignment.txt Finished invoke: name: align status: 0 time: 0.554817 Invoking: spamo -verbosity 1 -oc seqnotcut_memechip_out/spamo_out_1 -bgfile seqnotcut_memechip_out/background -primary ATGYADAT seqnotcut_memechip_out/seq-not-cut.fa seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo1 status: 0 time: 0.527831 Invoking: spamo -verbosity 1 -oc seqnotcut_memechip_out/spamo_out_2 -bgfile seqnotcut_memechip_out/background -primary MATRACAA seqnotcut_memechip_out/seq-not-cut.fa seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo2 status: 0 time: 0.399994 Invoking: spamo -verbosity 1 -oc seqnotcut_memechip_out/spamo_out_3 -bgfile seqnotcut_memechip_out/background -primary CTGKGD seqnotcut_memechip_out/seq-not-cut.fa seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo3 status: 0 time: 0.389579 Invoking: spamo -verbosity 1 -oc seqnotcut_memechip_out/spamo_out_4 -bgfile seqnotcut_memechip_out/background -primary DAAATR seqnotcut_memechip_out/seq-not-cut.fa seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo4 status: 0 time: 0.353315 Invoking: spamo -verbosity 1 -oc seqnotcut_memechip_out/spamo_out_5 -bgfile seqnotcut_memechip_out/background -primary RGARA seqnotcut_memechip_out/seq-not-cut.fa seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo5 status: 0 time: 0.393489 Invoking: spamo -verbosity 1 -oc seqnotcut_memechip_out/spamo_out_6 -bgfile seqnotcut_memechip_out/background -primary CTSCWG seqnotcut_memechip_out/seq-not-cut.fa seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo6 status: 0 time: 0.364226 Invoking: spamo -verbosity 1 -oc seqnotcut_memechip_out/spamo_out_7 -bgfile seqnotcut_memechip_out/background -primary CCRCCNC seqnotcut_memechip_out/seq-not-cut.fa seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo7 status: 0 time: 0.423994 Invoking: spamo -verbosity 1 -oc seqnotcut_memechip_out/spamo_out_8 -bgfile seqnotcut_memechip_out/background -primary WVAAAAVAAAARAAAAVAAR seqnotcut_memechip_out/seq-not-cut.fa seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo8 status: 0 time: 0.441335 Invoking: spamo -verbosity 1 -oc seqnotcut_memechip_out/spamo_out_9 -bgfile seqnotcut_memechip_out/background -primary ACACAYAC seqnotcut_memechip_out/seq-not-cut.fa seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo9 status: 0 time: 0.424172 Invoking: spamo -verbosity 1 -oc seqnotcut_memechip_out/spamo_out_10 -bgfile seqnotcut_memechip_out/background -primary CDGGAA seqnotcut_memechip_out/seq-not-cut.fa seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo10 status: 0 time: 0.437833 Invoking: spamo -verbosity 1 -oc seqnotcut_memechip_out/spamo_out_11 -bgfile seqnotcut_memechip_out/background -primary ACGTGD seqnotcut_memechip_out/seq-not-cut.fa seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo11 status: 0 time: 0.436482 Invoking: spamo -verbosity 1 -oc seqnotcut_memechip_out/spamo_out_12 -bgfile seqnotcut_memechip_out/background -primary AGRKGGCG seqnotcut_memechip_out/seq-not-cut.fa seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo12 status: 0 time: 0.393316 Invoking: spamo -verbosity 1 -oc seqnotcut_memechip_out/spamo_out_13 -bgfile seqnotcut_memechip_out/background -primary CYTCCC seqnotcut_memechip_out/seq-not-cut.fa seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo13 status: 0 time: 0.346987 Invoking: spamo -verbosity 1 -oc seqnotcut_memechip_out/spamo_out_14 -bgfile seqnotcut_memechip_out/background -primary ACARWG seqnotcut_memechip_out/seq-not-cut.fa seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo14 status: 0 time: 0.421072 Invoking: spamo -verbosity 1 -oc seqnotcut_memechip_out/spamo_out_15 -bgfile seqnotcut_memechip_out/background -primary RAATR seqnotcut_memechip_out/seq-not-cut.fa seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo15 status: 0 time: 0.440365 Invoking: spamo -verbosity 1 -oc seqnotcut_memechip_out/spamo_out_16 -bgfile seqnotcut_memechip_out/background -primary CRYCTGTA seqnotcut_memechip_out/seq-not-cut.fa seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo16 status: 0 time: 0.401556 Invoking: spamo -verbosity 1 -oc seqnotcut_memechip_out/spamo_out_17 -bgfile seqnotcut_memechip_out/background -primary CWGCCTS seqnotcut_memechip_out/seq-not-cut.fa seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo17 status: 0 time: 0.383871 Invoking: spamo -verbosity 1 -oc seqnotcut_memechip_out/spamo_out_18 -bgfile seqnotcut_memechip_out/background -primary CHGYG seqnotcut_memechip_out/seq-not-cut.fa seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo18 status: 0 time: 0.419927 Invoking: spamo -verbosity 1 -oc seqnotcut_memechip_out/spamo_out_19 -bgfile seqnotcut_memechip_out/background -primary SSGGGHBKVSRGGBSMGVGSSVGSSSSS seqnotcut_memechip_out/seq-not-cut.fa seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo19 status: 0 time: 0.437565 Invoking: spamo -verbosity 1 -oc seqnotcut_memechip_out/spamo_out_20 -bgfile seqnotcut_memechip_out/background -primary CCACCAKG seqnotcut_memechip_out/seq-not-cut.fa seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo20 status: 0 time: 0.403769 Invoking: spamo -verbosity 1 -oc seqnotcut_memechip_out/spamo_out_21 -bgfile seqnotcut_memechip_out/background -primary CCYGGS seqnotcut_memechip_out/seq-not-cut.fa seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo21 status: 0 time: 0.408232 Invoking: spamo -verbosity 1 -oc seqnotcut_memechip_out/spamo_out_22 -bgfile seqnotcut_memechip_out/background -primary TTTAAAAR seqnotcut_memechip_out/seq-not-cut.fa seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo22 status: 0 time: 0.463395 Invoking: spamo -verbosity 1 -oc seqnotcut_memechip_out/spamo_out_23 -bgfile seqnotcut_memechip_out/background -primary CTHCCTC seqnotcut_memechip_out/seq-not-cut.fa seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo23 status: 0 time: 0.395302 Invoking: spamo -verbosity 1 -oc seqnotcut_memechip_out/spamo_out_24 -bgfile seqnotcut_memechip_out/background -primary CAGAKGCC seqnotcut_memechip_out/seq-not-cut.fa seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo24 status: 0 time: 0.405337 Invoking: spamo -verbosity 1 -oc seqnotcut_memechip_out/spamo_out_25 -bgfile seqnotcut_memechip_out/background -primary AYAAAAG seqnotcut_memechip_out/seq-not-cut.fa seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo25 status: 0 time: 0.419144 Invoking: spamo -verbosity 1 -oc seqnotcut_memechip_out/spamo_out_26 -bgfile seqnotcut_memechip_out/background -primary CCACCTAC seqnotcut_memechip_out/seq-not-cut.fa seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo26 status: 0 time: 0.416906 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc seqnotcut_memechip_out/fimo_out_1 --bgfile seqnotcut_memechip_out/background --motif ATGYADAT seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/seq-not-cut.fa Finished invoke: name: fimo1 status: 0 time: 2.550169 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc seqnotcut_memechip_out/fimo_out_2 --bgfile seqnotcut_memechip_out/background --motif MATRACAA seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/seq-not-cut.fa Finished invoke: name: fimo2 status: 0 time: 2.533988 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc seqnotcut_memechip_out/fimo_out_3 --bgfile seqnotcut_memechip_out/background --motif CTGKGD seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/seq-not-cut.fa Finished invoke: name: fimo3 status: 0 time: 2.424817 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc seqnotcut_memechip_out/fimo_out_4 --bgfile seqnotcut_memechip_out/background --motif DAAATR seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/seq-not-cut.fa Finished invoke: name: fimo4 status: 0 time: 2.490199 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc seqnotcut_memechip_out/fimo_out_5 --bgfile seqnotcut_memechip_out/background --motif RGARA seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/seq-not-cut.fa Finished invoke: name: fimo5 status: 0 time: 2.345436 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc seqnotcut_memechip_out/fimo_out_6 --bgfile seqnotcut_memechip_out/background --motif CTSCWG seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/seq-not-cut.fa Finished invoke: name: fimo6 status: 0 time: 2.370964 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc seqnotcut_memechip_out/fimo_out_7 --bgfile seqnotcut_memechip_out/background --motif CCRCCNC seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/seq-not-cut.fa Finished invoke: name: fimo7 status: 0 time: 2.66049 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc seqnotcut_memechip_out/fimo_out_8 --bgfile seqnotcut_memechip_out/background --motif WVAAAAVAAAARAAAAVAAR seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/seq-not-cut.fa Finished invoke: name: fimo8 status: 0 time: 3.041858 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc seqnotcut_memechip_out/fimo_out_9 --bgfile seqnotcut_memechip_out/background --motif ACACAYAC seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/seq-not-cut.fa Finished invoke: name: fimo9 status: 0 time: 2.498279 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc seqnotcut_memechip_out/fimo_out_10 --bgfile seqnotcut_memechip_out/background --motif CDGGAA seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/seq-not-cut.fa Finished invoke: name: fimo10 status: 0 time: 2.369434 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc seqnotcut_memechip_out/fimo_out_11 --bgfile seqnotcut_memechip_out/background --motif ACGTGD seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/seq-not-cut.fa Finished invoke: name: fimo11 status: 0 time: 2.49372 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc seqnotcut_memechip_out/fimo_out_12 --bgfile seqnotcut_memechip_out/background --motif AGRKGGCG seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/seq-not-cut.fa Finished invoke: name: fimo12 status: 0 time: 2.458214 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc seqnotcut_memechip_out/fimo_out_13 --bgfile seqnotcut_memechip_out/background --motif CYTCCC seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/seq-not-cut.fa Finished invoke: name: fimo13 status: 0 time: 2.574645 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc seqnotcut_memechip_out/fimo_out_14 --bgfile seqnotcut_memechip_out/background --motif ACARWG seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/seq-not-cut.fa Finished invoke: name: fimo14 status: 0 time: 2.370259 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc seqnotcut_memechip_out/fimo_out_15 --bgfile seqnotcut_memechip_out/background --motif RAATR seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/seq-not-cut.fa Finished invoke: name: fimo15 status: 0 time: 2.638194 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc seqnotcut_memechip_out/fimo_out_16 --bgfile seqnotcut_memechip_out/background --motif CRYCTGTA seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/seq-not-cut.fa Finished invoke: name: fimo16 status: 0 time: 2.496768 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc seqnotcut_memechip_out/fimo_out_17 --bgfile seqnotcut_memechip_out/background --motif CWGCCTS seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/seq-not-cut.fa Finished invoke: name: fimo17 status: 0 time: 2.535476 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc seqnotcut_memechip_out/fimo_out_18 --bgfile seqnotcut_memechip_out/background --motif CHGYG seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/seq-not-cut.fa Finished invoke: name: fimo18 status: 0 time: 2.415882 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc seqnotcut_memechip_out/fimo_out_19 --bgfile seqnotcut_memechip_out/background --motif SSGGGHBKVSRGGBSMGVGSSVGSSSSS seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/seq-not-cut.fa Finished invoke: name: fimo19 status: 0 time: 3.201914 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc seqnotcut_memechip_out/fimo_out_20 --bgfile seqnotcut_memechip_out/background --motif CCACCAKG seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/seq-not-cut.fa Finished invoke: name: fimo20 status: 0 time: 2.488675 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc seqnotcut_memechip_out/fimo_out_21 --bgfile seqnotcut_memechip_out/background --motif CCYGGS seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/seq-not-cut.fa Finished invoke: name: fimo21 status: 0 time: 2.335267 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc seqnotcut_memechip_out/fimo_out_22 --bgfile seqnotcut_memechip_out/background --motif TTTAAAAR seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/seq-not-cut.fa Finished invoke: name: fimo22 status: 0 time: 2.557915 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc seqnotcut_memechip_out/fimo_out_23 --bgfile seqnotcut_memechip_out/background --motif CTHCCTC seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/seq-not-cut.fa Finished invoke: name: fimo23 status: 0 time: 2.483394 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc seqnotcut_memechip_out/fimo_out_24 --bgfile seqnotcut_memechip_out/background --motif CAGAKGCC seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/seq-not-cut.fa Finished invoke: name: fimo24 status: 0 time: 2.51007 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc seqnotcut_memechip_out/fimo_out_25 --bgfile seqnotcut_memechip_out/background --motif AYAAAAG seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/seq-not-cut.fa Finished invoke: name: fimo25 status: 0 time: 2.582656 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc seqnotcut_memechip_out/fimo_out_26 --bgfile seqnotcut_memechip_out/background --motif CCACCTAC seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/seq-not-cut.fa Finished invoke: name: fimo26 status: 0 time: 2.994759 Writing output Invoking: meme-chip_html_to_tsv seqnotcut_memechip_out/meme-chip.html seqnotcut_memechip_out/summary.tsv Finished invoke: name: summary status: 0 time: 0.198893 Done