******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= seqnotcut_memechip_out/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr10:85276896-85276996 1.0000 100 chr20:46382899-46382999 1.0000 100 chr6:86835252-86835352 1.0000 100 chr16:66765494-66765594 1.0000 100 chr2:77749452-77749552 1.0000 100 chr10:103954838-10395493 1.0000 100 chr12:67732366-67732466 1.0000 100 chrX:17620057-17620157 1.0000 100 chr5:42583471-42583571 1.0000 100 chr17:48994815-48994915 1.0000 100 chr1:71500132-71500232 1.0000 100 chr3:106932103-106932203 1.0000 100 chr1:207108913-207109013 1.0000 100 chr11:125495828-12549592 1.0000 100 chr9:118121926-118122026 1.0000 100 chr1:218065970-218066070 1.0000 100 chr3:134172545-134172645 1.0000 100 chr13:36849557-36849657 1.0000 100 chr6:25380068-25380168 1.0000 100 chr1:211550971-211551071 1.0000 100 chr3:45035172-45035272 1.0000 100 chr13:26052508-26052608 1.0000 100 chr10:117486141-11748624 1.0000 100 chr3:107103805-107103905 1.0000 100 chr8:71520764-71520864 1.0000 100 chr16:75899772-75899872 1.0000 100 chr7:89561983-89562083 1.0000 100 chr3:156823095-156823195 1.0000 100 chr18:34479314-34479414 1.0000 100 chr8:112929244-112929344 1.0000 100 chr4:77197752-77197852 1.0000 100 chr13:67238534-67238634 1.0000 100 chr9:18144064-18144164 1.0000 100 chr10:129934843-12993494 1.0000 100 chr11:77251415-77251515 1.0000 100 chr7:70375877-70375977 1.0000 100 chr1:183914602-183914702 1.0000 100 chr5:44172087-44172187 1.0000 100 chr15:65101056-65101156 1.0000 100 chr4:108811993-108812093 1.0000 100 chr19:42536812-42536912 1.0000 100 chr2:172137756-172137856 1.0000 100 chr16:13416239-13416339 1.0000 100 chr19:8643670-8643770 1.0000 100 chr4:145964597-145964697 1.0000 100 chr4:93901992-93902092 1.0000 100 chr6:106698093-106698193 1.0000 100 chr6:3165736-3165836 1.0000 100 chr16:2570163-2570263 1.0000 100 chr9:95912708-95912808 1.0000 100 chr4:28077481-28077581 1.0000 100 chr1:215825333-215825433 1.0000 100 chr7:41149072-41149172 1.0000 100 chr4:80886241-80886341 1.0000 100 chr17:755762-755862 1.0000 100 chr2:77750983-77751083 1.0000 100 chr21:26198099-26198199 1.0000 100 chr14:86520255-86520355 1.0000 100 chr8:90629768-90629868 1.0000 100 chr14:57530966-57531066 1.0000 100 chr22:45410575-45410675 1.0000 100 chr4:111558115-111558215 1.0000 100 chr2:98280735-98280835 1.0000 100 chr2:196881183-196881283 1.0000 100 chr13:103498096-10349819 1.0000 100 chr1:152402480-152402580 1.0000 100 chr15:29291641-29291741 1.0000 100 chr4:99669731-99669831 1.0000 100 chr5:72989500-72989600 1.0000 100 chr4:177772209-177772309 1.0000 100 chr3:187148512-187148612 1.0000 100 chr17:73340896-73340996 1.0000 100 chr2:202826373-202826473 1.0000 100 chr2:49587184-49587284 1.0000 100 chr4:141237210-141237310 1.0000 100 chr8:86933889-86933989 1.0000 100 chr12:88897112-88897212 1.0000 100 chr10:10236873-10236973 1.0000 100 chr11:41928116-41928216 1.0000 100 chr2:98508183-98508283 1.0000 100 chr14:75307976-75308076 1.0000 100 chr9:122914867-122914967 1.0000 100 chr13:72434033-72434133 1.0000 100 chr6:169357077-169357177 1.0000 100 chr16:74194688-74194788 1.0000 100 chr3:13763761-13763861 1.0000 100 chr9:104150413-104150513 1.0000 100 chr4:101983264-101983364 1.0000 100 chr8:126103983-126104083 1.0000 100 chr17:58167756-58167856 1.0000 100 chr14:105317959-10531805 1.0000 100 chr2:147433261-147433361 1.0000 100 chr8:23207536-23207636 1.0000 100 chr16:55418962-55419062 1.0000 100 chr6:67117150-67117250 1.0000 100 chr16:13253716-13253816 1.0000 100 chr8:75354460-75354560 1.0000 100 chr3:157995955-157996055 1.0000 100 chrX:129464667-129464767 1.0000 100 chr18:29526626-29526726 1.0000 100 chr12:9197525-9197625 1.0000 100 chr2:31922331-31922431 1.0000 100 chr9:15255513-15255613 1.0000 100 chr4:12061083-12061183 1.0000 100 chr2:85482921-85483021 1.0000 100 chr9:913959-914059 1.0000 100 chr17:20865549-20865649 1.0000 100 chrX:93330313-93330413 1.0000 100 chr4:11823645-11823745 1.0000 100 chr6:36563056-36563156 1.0000 100 chr4:140774521-140774621 1.0000 100 chr11:36509560-36509660 1.0000 100 chr12:59003903-59004003 1.0000 100 chr1:32626034-32626134 1.0000 100 chr1:180881041-180881141 1.0000 100 chrY:14705865-14705965 1.0000 100 chr7:149388186-149388286 1.0000 100 chr3:6463463-6463563 1.0000 100 chr11:133727154-13372725 1.0000 100 chr7:121759148-121759248 1.0000 100 chr15:49664667-49664767 1.0000 100 chr5:104009312-104009412 1.0000 100 chr17:17494899-17494999 1.0000 100 chrX:919273-919373 1.0000 100 chr12:12436168-12436268 1.0000 100 chr14:51244618-51244718 1.0000 100 chr8:132981518-132981618 1.0000 100 chr5:12865779-12865879 1.0000 100 chr7:7951049-7951149 1.0000 100 chr19:53640466-53640566 1.0000 100 chr14:71681636-71681736 1.0000 100 chr19:1745295-1745395 1.0000 100 chr3:120332566-120332666 1.0000 100 chr2:24523051-24523151 1.0000 100 chr9:91536889-91536989 1.0000 100 chr4:91990773-91990873 1.0000 100 chr5:77372180-77372280 1.0000 100 chr10:12045211-12045311 1.0000 100 chr1:41205412-41205512 1.0000 100 chr2:162893575-162893675 1.0000 100 chr2:134892058-134892158 1.0000 100 chr1:168228922-168229022 1.0000 100 chr2:17319644-17319744 1.0000 100 chr7:20976279-20976379 1.0000 100 chr1:86048214-86048314 1.0000 100 chr4:78592281-78592381 1.0000 100 chr1:35859124-35859224 1.0000 100 chr1:91994194-91994294 1.0000 100 chr20:30932777-30932877 1.0000 100 chr15:70390021-70390121 1.0000 100 chr5:140793956-140794056 1.0000 100 chr15:44719328-44719428 1.0000 100 chr4:24587986-24588086 1.0000 100 chr3:46627484-46627584 1.0000 100 chr1:62672956-62673056 1.0000 100 chr11:38604668-38604768 1.0000 100 chr1:36272127-36272227 1.0000 100 chr17:27296636-27296736 1.0000 100 chr8:89603173-89603273 1.0000 100 chr2:26136569-26136669 1.0000 100 chr15:52122229-52122329 1.0000 100 chr4:113444214-113444314 1.0000 100 chr11:92891275-92891375 1.0000 100 chr12:43403848-43403948 1.0000 100 chr3:33414498-33414598 1.0000 100 chr2:231734612-231734712 1.0000 100 chr3:18915279-18915379 1.0000 100 chr1:55606221-55606321 1.0000 100 chr18:3409167-3409267 1.0000 100 chr6:15939914-15940014 1.0000 100 chr17:27045033-27045133 1.0000 100 chr6:18334316-18334416 1.0000 100 chr20:54964553-54964653 1.0000 100 chr5:140365792-140365892 1.0000 100 chr15:29287540-29287640 1.0000 100 chr5:74119719-74119819 1.0000 100 chr1:76189190-76189290 1.0000 100 chr5:35036931-35037031 1.0000 100 chr17:42633890-42633990 1.0000 100 chr1:16178987-16179087 1.0000 100 chr3:140229227-140229327 1.0000 100 chrX:155002146-155002246 1.0000 100 chr11:132507287-13250738 1.0000 100 chr14:91108539-91108639 1.0000 100 chrX:122143192-122143292 1.0000 100 chr7:137358335-137358435 1.0000 100 chr18:63490657-63490757 1.0000 100 chr6:14306636-14306736 1.0000 100 chr17:13874436-13874536 1.0000 100 chr2:237088288-237088388 1.0000 100 chr22:19147889-19147989 1.0000 100 chr13:61253502-61253602 1.0000 100 chr2:70613174-70613274 1.0000 100 chr2:104426471-104426571 1.0000 100 chr8:14364526-14364626 1.0000 100 chr14:23292106-23292206 1.0000 100 chr6:111874343-111874443 1.0000 100 chr17:42908227-42908327 1.0000 100 chr14:57266102-57266202 1.0000 100 chr16:68278907-68279007 1.0000 100 chr6:119675013-119675113 1.0000 100 chr4:52728041-52728141 1.0000 100 chr3:175703769-175703869 1.0000 100 chr5:1934892-1934992 1.0000 100 chr12:131378535-13137863 1.0000 100 chr20:37359647-37359747 1.0000 100 chr10:8097354-8097454 1.0000 100 chr16:16947118-16947218 1.0000 100 chr1:203812687-203812787 1.0000 100 chr5:31576911-31577011 1.0000 100 chr8:9864034-9864134 1.0000 100 chr2:67469498-67469598 1.0000 100 chr8:77832925-77833025 1.0000 100 chr2:137142491-137142591 1.0000 100 chr6:168262368-168262468 1.0000 100 chr2:67514409-67514509 1.0000 100 chr2:58893545-58893645 1.0000 100 chr8:56806146-56806246 1.0000 100 chr19:6555508-6555608 1.0000 100 chr6:160338552-160338652 1.0000 100 chr4:12148054-12148154 1.0000 100 chr17:42619329-42619429 1.0000 100 chr9:123698813-123698913 1.0000 100 chr7:93180429-93180529 1.0000 100 chr15:55133175-55133275 1.0000 100 chr4:170891638-170891738 1.0000 100 chr10:47015514-47015614 1.0000 100 chr2:213727870-213727970 1.0000 100 chr11:109471796-10947189 1.0000 100 chr2:68890480-68890580 1.0000 100 chr11:56427279-56427379 1.0000 100 chr7:30596496-30596596 1.0000 100 chr1:165848890-165848990 1.0000 100 chr7:137703969-137704069 1.0000 100 chr20:2846317-2846417 1.0000 100 chr20:24452083-24452183 1.0000 100 chr3:149381846-149381946 1.0000 100 chr1:113228674-113228774 1.0000 100 chr3:34849870-34849970 1.0000 100 chr4:34930138-34930238 1.0000 100 chr18:21958695-21958795 1.0000 100 chr18:5162919-5163019 1.0000 100 chr1:53884790-53884890 1.0000 100 chr10:18424968-18425068 1.0000 100 chr6:28456694-28456794 1.0000 100 chr10:36872083-36872183 1.0000 100 chr9:72274460-72274560 1.0000 100 chr1:246567640-246567740 1.0000 100 chr6:47339183-47339283 1.0000 100 chr15:63338429-63338529 1.0000 100 chr17:12369929-12370029 1.0000 100 chr18:18730883-18730983 1.0000 100 chr20:49253885-49253985 1.0000 100 chr22:43011590-43011690 1.0000 100 chr2:208640649-208640749 1.0000 100 chr12:77346259-77346359 1.0000 100 chr9:26504574-26504674 1.0000 100 chr8:33370494-33370594 1.0000 100 chr17:2041635-2041735 1.0000 100 chr2:26504859-26504959 1.0000 100 chr6:28615859-28615959 1.0000 100 chrX:101978453-101978553 1.0000 100 chr7:70491830-70491930 1.0000 100 chr7:83839285-83839385 1.0000 100 chr22:47498684-47498784 1.0000 100 chr11:122376217-12237631 1.0000 100 chr9:111146463-111146563 1.0000 100 chr3:30590484-30590584 1.0000 100 chr4:96967680-96967780 1.0000 100 chr9:121850208-121850308 1.0000 100 chr17:41445276-41445376 1.0000 100 chr2:139722552-139722652 1.0000 100 chr3:102804521-102804621 1.0000 100 chr12:23910580-23910680 1.0000 100 chr7:95773020-95773120 1.0000 100 chr10:16197975-16198075 1.0000 100 chr10:59164120-59164220 1.0000 100 chr4:1044696-1044796 1.0000 100 chr3:103237164-103237264 1.0000 100 chr16:77709748-77709848 1.0000 100 chr4:171737241-171737341 1.0000 100 chr5:160504746-160504846 1.0000 100 chr19:46080876-46080976 1.0000 100 chr1:167304500-167304600 1.0000 100 chr20:11699913-11700013 1.0000 100 chr5:156755307-156755407 1.0000 100 chr12:32223757-32223857 1.0000 100 chr15:39974496-39974596 1.0000 100 chr10:125514730-12551483 1.0000 100 chr18:50293333-50293433 1.0000 100 chr11:55544965-55545065 1.0000 100 chr4:669955-670055 1.0000 100 chr14:46256456-46256556 1.0000 100 chr8:20138387-20138487 1.0000 100 chr11:113666493-11366659 1.0000 100 chr2:135699636-135699736 1.0000 100 chr20:15405503-15405603 1.0000 100 chr6:4019028-4019128 1.0000 100 chr6:153162468-153162568 1.0000 100 chr5:159624996-159625096 1.0000 100 chr7:29588614-29588714 1.0000 100 chr14:81781864-81781964 1.0000 100 chr2:148431319-148431419 1.0000 100 chr1:210547262-210547362 1.0000 100 chr19:21625257-21625357 1.0000 100 chr14:104260216-10426031 1.0000 100 chr17:70759758-70759858 1.0000 100 chr13:49550387-49550487 1.0000 100 chr2:50424392-50424492 1.0000 100 chr12:70160112-70160212 1.0000 100 chr2:222333148-222333248 1.0000 100 chr10:16033641-16033741 1.0000 100 chr7:86273474-86273574 1.0000 100 chr2:190082376-190082476 1.0000 100 chr4:4661677-4661777 1.0000 100 chr3:172819091-172819191 1.0000 100 chr15:52548609-52548709 1.0000 100 chr12:54793164-54793264 1.0000 100 chr14:80831855-80831955 1.0000 100 chr4:110308214-110308314 1.0000 100 chr2:178013241-178013341 1.0000 100 chr17:2135502-2135602 1.0000 100 chr15:65847616-65847716 1.0000 100 chr3:181444394-181444494 1.0000 100 chr8:111188913-111189013 1.0000 100 chr11:27727605-27727705 1.0000 100 chr13:52544564-52544664 1.0000 100 chr7:1309662-1309762 1.0000 100 chr5:164677082-164677182 1.0000 100 chr4:152545773-152545873 1.0000 100 chr4:67955998-67956098 1.0000 100 chr3:48126749-48126849 1.0000 100 chr14:55604992-55605092 1.0000 100 chr1:203608970-203609070 1.0000 100 chr6:139100866-139100966 1.0000 100 chr12:115482166-11548226 1.0000 100 chr10:115618401-11561850 1.0000 100 chr6:76000513-76000613 1.0000 100 chr15:92308045-92308145 1.0000 100 chr4:17763555-17763655 1.0000 100 chr22:35772921-35773021 1.0000 100 chr20:12663319-12663419 1.0000 100 chr2:42388623-42388723 1.0000 100 chr2:154147162-154147262 1.0000 100 chr16:53237300-53237400 1.0000 100 chr5:62917522-62917622 1.0000 100 chr9:113502970-113503070 1.0000 100 chr12:10358221-10358321 1.0000 100 chr15:60688509-60688609 1.0000 100 chr3:64152474-64152574 1.0000 100 chr6:64089152-64089252 1.0000 100 chr10:4272188-4272288 1.0000 100 chr15:98964882-98964982 1.0000 100 chr10:29050657-29050757 1.0000 100 chr6:144555621-144555721 1.0000 100 chr18:73439537-73439637 1.0000 100 chr5:170044582-170044682 1.0000 100 chr1:181592161-181592261 1.0000 100 chr9:15211522-15211622 1.0000 100 chr5:106888851-106888951 1.0000 100 chr17:66728392-66728492 1.0000 100 chr6:46450870-46450970 1.0000 100 chr5:14672931-14673031 1.0000 100 chr9:23799752-23799852 1.0000 100 chr15:74823919-74824019 1.0000 100 chr1:88434409-88434509 1.0000 100 chr9:81975925-81976025 1.0000 100 chr7:41975455-41975555 1.0000 100 chr4:139180163-139180263 1.0000 100 chr7:14596678-14596778 1.0000 100 chr5:51029010-51029110 1.0000 100 chr11:615700-615800 1.0000 100 chr1:165826257-165826357 1.0000 100 chr11:15980061-15980161 1.0000 100 chr18:20532024-20532124 1.0000 100 chr4:160083367-160083467 1.0000 100 chr11:81809286-81809386 1.0000 100 chr4:181561461-181561561 1.0000 100 chr1:178859907-178860007 1.0000 100 chr12:28417947-28418047 1.0000 100 chr18:26269926-26270026 1.0000 100 chr1:204777266-204777366 1.0000 100 chr4:135545616-135545716 1.0000 100 chr11:73857698-73857798 1.0000 100 chr6:68901182-68901282 1.0000 100 chr1:92119757-92119857 1.0000 100 chr7:108767183-108767283 1.0000 100 chr14:21538807-21538907 1.0000 100 chr17:46796930-46797030 1.0000 100 chr10:35882708-35882808 1.0000 100 chr1:22378932-22379032 1.0000 100 chr19:49907034-49907134 1.0000 100 chr11:128741063-12874116 1.0000 100 chr9:26742897-26742997 1.0000 100 chr12:14204991-14205091 1.0000 100 chr13:58680515-58680615 1.0000 100 chr9:131171422-131171522 1.0000 100 chr3:54887170-54887270 1.0000 100 chr17:15074590-15074690 1.0000 100 chr17:57184419-57184519 1.0000 100 chr22:42834496-42834596 1.0000 100 chr8:4752045-4752145 1.0000 100 chr5:74884634-74884734 1.0000 100 chr5:133747530-133747630 1.0000 100 chr22:28838257-28838357 1.0000 100 chr4:123230888-123230988 1.0000 100 chr7:10122685-10122785 1.0000 100 chr1:59032065-59032165 1.0000 100 chr3:167670835-167670935 1.0000 100 chr7:83310705-83310805 1.0000 100 chr10:44250129-44250229 1.0000 100 chr4:53437529-53437629 1.0000 100 chr1:25845984-25846084 1.0000 100 chr1:100645404-100645504 1.0000 100 chr1:120125520-120125620 1.0000 100 chr2:171050015-171050115 1.0000 100 chr1:205456585-205456685 1.0000 100 chr2:6086420-6086520 1.0000 100 chr12:12423935-12424035 1.0000 100 chr2:2616961-2617061 1.0000 100 chr5:76116105-76116205 1.0000 100 chr9:5615111-5615211 1.0000 100 chr17:8023567-8023667 1.0000 100 chr4:111544384-111544484 1.0000 100 chr9:123115969-123116069 1.0000 100 chr20:18447875-18447975 1.0000 100 chr1:109618649-109618749 1.0000 100 chr1:93430485-93430585 1.0000 100 chr12:117003867-11700396 1.0000 100 chr15:98795444-98795544 1.0000 100 chr11:91085376-91085476 1.0000 100 chr20:30311262-30311362 1.0000 100 chr7:127660328-127660428 1.0000 100 chr7:157126189-157126289 1.0000 100 chr20:2490506-2490606 1.0000 100 chr13:30434315-30434415 1.0000 100 chr14:68487667-68487767 1.0000 100 chr21:41464251-41464351 1.0000 100 chr15:101835389-10183548 1.0000 100 chrX:150573881-150573981 1.0000 100 chr19:17156482-17156582 1.0000 100 chr4:28682204-28682304 1.0000 100 chr3:68681399-68681499 1.0000 100 chr5:141191116-141191216 1.0000 100 chr18:65280002-65280102 1.0000 100 chrX:2436119-2436219 1.0000 100 chr2:58480468-58480568 1.0000 100 chr1:6930150-6930250 1.0000 100 chr5:64726046-64726146 1.0000 100 chr20:55807196-55807296 1.0000 100 chr2:98386983-98387083 1.0000 100 chr3:80312514-80312614 1.0000 100 chr12:57233834-57233934 1.0000 100 chr12:32712012-32712112 1.0000 100 chr10:65389313-65389413 1.0000 100 chr4:122200779-122200879 1.0000 100 chr5:15796781-15796881 1.0000 100 chr20:61200068-61200168 1.0000 100 chr2:191184475-191184575 1.0000 100 chr10:115928464-11592856 1.0000 100 chr6:123377869-123377969 1.0000 100 chr2:208323917-208324017 1.0000 100 chr11:110245874-11024597 1.0000 100 chrX:15598161-15598261 1.0000 100 chr5:66171162-66171262 1.0000 100 chr19:57983525-57983625 1.0000 100 chr1:15853358-15853458 1.0000 100 chr10:49713504-49713604 1.0000 100 chr13:30628226-30628326 1.0000 100 chr2:147784271-147784371 1.0000 100 chr7:139044250-139044350 1.0000 100 chr12:19387131-19387231 1.0000 100 chr12:31740007-31740107 1.0000 100 chr1:71151065-71151165 1.0000 100 chr5:80898869-80898969 1.0000 100 chr18:48801166-48801266 1.0000 100 chr17:49799293-49799393 1.0000 100 chr11:126175522-12617562 1.0000 100 chr9:103605338-103605438 1.0000 100 chr12:57852819-57852919 1.0000 100 chr8:50711242-50711342 1.0000 100 chr3:187236102-187236202 1.0000 100 chr16:72493719-72493819 1.0000 100 chr11:84898008-84898108 1.0000 100 chr2:177628941-177629041 1.0000 100 chr9:37446731-37446831 1.0000 100 chr20:40359569-40359669 1.0000 100 chr12:101065552-10106565 1.0000 100 chr2:224508015-224508115 1.0000 100 chr7:66857686-66857786 1.0000 100 chr4:110037929-110038029 1.0000 100 chr1:160345784-160345884 1.0000 100 chr15:41136421-41136521 1.0000 100 chr7:33422840-33422940 1.0000 100 chr6:141771934-141772034 1.0000 100 chr3:185825402-185825502 1.0000 100 chr11:97178824-97178924 1.0000 100 chr3:193147066-193147166 1.0000 100 chr7:115445915-115446015 1.0000 100 chr7:36852053-36852153 1.0000 100 chr8:142231208-142231308 1.0000 100 chr7:85435556-85435656 1.0000 100 chr15:39444194-39444294 1.0000 100 chr3:32877562-32877662 1.0000 100 chr14:31388017-31388117 1.0000 100 chr1:8919547-8919647 1.0000 100 chr10:99205963-99206063 1.0000 100 chr14:23282252-23282352 1.0000 100 chr6:13814975-13815075 1.0000 100 chr5:4199053-4199153 1.0000 100 chr3:10385868-10385968 1.0000 100 chr2:236305184-236305284 1.0000 100 chr17:52449497-52449597 1.0000 100 chr15:40085262-40085362 1.0000 100 chr6:26235044-26235144 1.0000 100 chr20:39070946-39071046 1.0000 100 chr6:50791896-50791996 1.0000 100 chr13:95467599-95467699 1.0000 100 chr5:5829860-5829960 1.0000 100 chr5:64560380-64560480 1.0000 100 chr15:52403459-52403559 1.0000 100 chr9:103910699-103910799 1.0000 100 chr11:64480674-64480774 1.0000 100 chr5:156692860-156692960 1.0000 100 chr2:112470192-112470292 1.0000 100 chr5:124106558-124106658 1.0000 100 chr2:10273412-10273512 1.0000 100 chr13:31163401-31163501 1.0000 100 chr5:126432432-126432532 1.0000 100 chr11:14081031-14081131 1.0000 100 chr2:114582722-114582822 1.0000 100 chr5:77703710-77703810 1.0000 100 chr11:11227500-11227600 1.0000 100 chr11:133399795-13339989 1.0000 100 chr14:68066960-68067060 1.0000 100 chr18:66343045-66343145 1.0000 100 chr1:82430824-82430924 1.0000 100 chr11:111427752-11142785 1.0000 100 chr2:208907783-208907883 1.0000 100 chr1:220554472-220554572 1.0000 100 chr5:101855648-101855748 1.0000 100 chr19:40360811-40360911 1.0000 100 chr7:157754937-157755037 1.0000 100 chr5:51749130-51749230 1.0000 100 chr21:45284115-45284215 1.0000 100 chr13:78178036-78178136 1.0000 100 chr5:32360083-32360183 1.0000 100 chr2:143213520-143213620 1.0000 100 chr2:189310180-189310280 1.0000 100 chr6:107196518-107196618 1.0000 100 chr5:123916729-123916829 1.0000 100 chr12:80178222-80178322 1.0000 100 chr10:127429121-12742922 1.0000 100 chr2:14979789-14979889 1.0000 100 chr17:9182944-9183044 1.0000 100 chr4:81148613-81148713 1.0000 100 chr7:42261886-42261986 1.0000 100 chr5:153866206-153866306 1.0000 100 chr9:11038277-11038377 1.0000 100 chr12:6793893-6793993 1.0000 100 chrX:39676198-39676298 1.0000 100 chr1:29513267-29513367 1.0000 100 chr22:37644762-37644862 1.0000 100 chr8:28352637-28352737 1.0000 100 chr5:148331273-148331373 1.0000 100 chr10:22906181-22906281 1.0000 100 chr20:2719355-2719455 1.0000 100 chr9:22723388-22723488 1.0000 100 chr14:23451939-23452039 1.0000 100 chr14:59824819-59824919 1.0000 100 chr2:181848479-181848579 1.0000 100 chr2:122444532-122444632 1.0000 100 chr4:95692255-95692355 1.0000 100 chr17:67297225-67297325 1.0000 100 chr10:99408455-99408555 1.0000 100 chr2:232235412-232235512 1.0000 100 chr17:39831949-39832049 1.0000 100 chr14:25271861-25271961 1.0000 100 chr14:65207032-65207132 1.0000 100 chr12:106935098-10693519 1.0000 100 chr17:42430363-42430463 1.0000 100 chr11:113644710-11364481 1.0000 100 chr14:65844258-65844358 1.0000 100 chr6:128602353-128602453 1.0000 100 chr3:127961692-127961792 1.0000 100 chr13:22780675-22780775 1.0000 100 chr10:14686423-14686523 1.0000 100 chr1:24613238-24613338 1.0000 100 chr5:54701916-54702016 1.0000 100 chr5:3734941-3735041 1.0000 100 chr2:200331962-200332062 1.0000 100 chr20:36965840-36965940 1.0000 100 chr6:66345827-66345927 1.0000 100 chr17:52517561-52517661 1.0000 100 chr6:74108259-74108359 1.0000 100 chr18:9443007-9443107 1.0000 100 chr12:63068452-63068552 1.0000 100 chr1:222216454-222216554 1.0000 100 chr1:24528747-24528847 1.0000 100 chr3:86779547-86779647 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme seqnotcut_memechip_out/seqs-sampled -oc seqnotcut_memechip_out/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile seqnotcut_memechip_out/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.274 C 0.226 G 0.226 T 0.274 Background letter frequencies (from seqnotcut_memechip_out/background): A 0.277 C 0.223 G 0.223 T 0.277 ******************************************************************************** ******************************************************************************** MOTIF MATTTGCATRWSAAW MEME-1 width = 15 sites = 87 llr = 857 E-value = 6.5e-031 ******************************************************************************** -------------------------------------------------------------------------------- Motif MATTTGCATRWSAAW MEME-1 Description -------------------------------------------------------------------------------- Simplified A 45::321a:461a95 pos.-specific C 31:2119::1:5::: probability G 21:1:7:::3:3::: matrix T 12967:::a232::5 bits 2.2 1.9 * 1.7 *** 1.5 *** * Relative 1.3 * *** ** Entropy 1.1 * **** ** (14.2 bits) 0.9 * **** ** 0.6 * ***** * *** 0.4 ******* * *** 0.2 *************** 0.0 --------------- Multilevel AATTTGCATAACAAA consensus C CAA GTG T sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MATTTGCATRWSAAW MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------- chr9:26742897-26742997 + 83 8.17e-09 GAGCCAAGAA AATTTGCATAACAAT TAC chr5:148331273-148331373 + 54 9.64e-09 GACCTCATGA CATTTGCATGACAAA TGCAGGAATG chr3:6463463-6463563 + 55 9.12e-08 GCCAGTGTAG CATCTGCATGACAAA GAAAGCAGTG chr1:215825333-215825433 + 11 1.14e-07 ATCCTCTCAT CATTTGCataataat cactcacatt chr17:20865549-20865649 - 29 1.45e-07 CCACATGGTC AATTTGCATATGAAA AGGTGTTCAG chr2:10273412-10273512 - 54 1.85e-07 TCTGGTTCCT CCTTTGCATGACAAA GTCCTCAGGT chr6:74108259-74108359 + 39 2.26e-07 CGTTAGAGAT AATCTGCATAAGAAT GAGATCACTG chr5:170044582-170044682 + 38 2.26e-07 tctcactgct cattagcatatcaaa ggctctgaaa chr4:110308214-110308314 + 40 2.79e-07 taatggctgg cgtttgcatatcaaa ggttgccagc chr2:50424392-50424492 + 17 2.79e-07 TCTTACATGC CATTAGCATATCAAT TGATCATGAA chr17:39831949-39832049 + 62 3.46e-07 ggagtaatca aattagcataagaat gcagtttctt chr20:12663319-12663419 - 71 4.12e-07 AATGACAAGG CATGTGCATGACAAA AGCTTGTTCC chr2:98386983-98387083 - 25 5.86e-07 ACCATCAGCA AATTTGCATTTGAAA AGTTAGTCAA chr6:141771934-141772034 + 74 6.95e-07 gggggaagga aatctgcatatgaat gcattcatgc chr8:75354460-75354560 - 63 6.95e-07 TAAACACTAA GCTTTGCATGACAAT AAGCTTTTCA chr12:10358221-10358321 + 79 9.73e-07 tagattggtg agtttgcatatgaaa ggcaggt chr10:125514730-12551483 + 29 9.73e-07 gtgacaggtt attttgcatttcaaa aagggctaag chr1:211550971-211551071 - 51 9.73e-07 CTGTTCTCTT ATTTTGCATCACAAA CATCCAGAAC chr6:3165736-3165836 + 31 1.51e-06 ccagctgatt cattagcataaaaaa gacatcactt chr1:25845984-25846084 + 38 1.73e-06 tcatctgcat aatgtgcataataat ggtatcctag chr10:18424968-18425068 + 73 1.73e-06 ATAAATTAGT CATCTGCATTTGAAT GCGTCGATGG chr1:35859124-35859224 - 86 1.73e-06 . GGTTTGCATAATAAA GCTTTGTTCT chr5:64560380-64560480 - 21 2.28e-06 ACTCTTGAGG CTTTTACATTACAAA GAAGTAATTT chr10:49713504-49713604 + 35 2.62e-06 CCCATCCCCA ATTCTGCATCACAAA ACCTCCCAGA chr4:12148054-12148154 - 30 2.62e-06 ATCAGTGGAA AATTAACATAAGAAT GACATCCACT chr14:91108539-91108639 - 68 2.97e-06 TTGGTTCACA CATTTCCATTACAAA CATTTCTTTG chr4:78592281-78592381 + 37 2.97e-06 taacccattt gatttccataacaat gcaaagagga chr3:34849870-34849970 - 22 3.33e-06 GGCACAAGAA AATCTGCATATAAAT GGACCTGAGC chr3:167670835-167670935 - 53 3.74e-06 ATACTCATGG ATTTAGCATTTCAAT GAGTGGAAGC chr5:80898869-80898969 - 10 4.21e-06 CTGGAGAACC CATGAGCATAATAAA AGGTTATTT chr5:5829860-5829960 - 40 4.73e-06 AACTGCCTTG ACTTTGCATAGCAAT TCTACCTCTA chr11:128741063-12874116 - 15 4.73e-06 ATAACTCCCT GGTCTGCATAATAAT GAGACATTCT chr5:124106558-124106658 - 16 5.30e-06 CACTTTATCA CATCCGCATTACAAA GAAAACTAAG chr11:73857698-73857798 + 41 5.30e-06 acacacacac aattaacatatgaat taaattcctg chr9:121850208-121850308 + 61 5.30e-06 TCTTTTGAAA CATTTGCATGACATT TTTAAGGGAG chr4:12061083-12061183 + 34 5.30e-06 aaactctcat tttctgcattacaat tgatttttta chr17:48994815-48994915 - 26 5.30e-06 ACATAACATG GTTTTGCATGAAAAA CAAGCCAGCA chr1:165826257-165826357 + 70 6.57e-06 ttttgttaca tattaacatgacaaa actaagactc chr3:175703769-175703869 + 5 6.57e-06 agtc atttagcattataat aattcctctt chr2:162893575-162893675 + 31 7.29e-06 CTGTGAAGCT GTTCTGCATGTGAAT GGCCTAGTCG chr22:47498684-47498784 - 69 8.09e-06 CGTGATTGGT AATTAGCATTGCAAA TACTGAGAAG chr6:47339183-47339283 + 80 8.98e-06 tcactagaga gatttgcatgactaa acagaa chr3:45035172-45035272 - 39 8.98e-06 GCTGCCTGCT CATATGCATCACAAT CTACTCCTTC chrX:39676198-39676298 + 13 1.10e-05 tcacaatgta cattagcatagtaaa ggctccagat chr11:133399795-13339989 + 37 1.21e-05 CTCCTGACAC AATTAGCATAAGAGT AGCCCTCAAA chr14:23282252-23282352 + 25 1.21e-05 GTGGTGCCCA GTTCCGCATAACAAA GGGCCCCAAA chr18:50293333-50293433 - 53 1.21e-05 GGAAGAACAA ACTTTGCATGGGAAA CAGGCCAATA chr17:73340896-73340996 - 21 1.21e-05 CGGGTTTGCC TGTTAGCATCACAAA ACATGAGTAA chr2:177628941-177629041 + 16 1.33e-05 GGGTGTGTGT TATTTGCATATCAGA GACCCTTTGT chr10:44250129-44250229 - 40 1.33e-05 GTTGTGCTAC CACTTGCATATGAAA GCTCCTCTGA chr10:99408455-99408555 - 19 1.46e-05 GGAACCCCAG CCTCTGAATAACAAA GCAGCAGTAG chr1:88434409-88434509 - 37 1.46e-05 CCGCCTGGCC TGTTTACATGAGAAT GTGAGCCTAA chr3:193147066-193147166 - 5 1.76e-05 CTGCAATGAA CATTTGCATAAAATA TCTT chr20:2490506-2490606 - 84 1.76e-05 AC TGTTTACATTTCAAA GAGATGGCTC chr12:106935098-10693519 - 61 2.11e-05 TTGCTAAAGA GATTAGCATGACTAA AAGGGAGCCA chr9:913959-914059 - 39 2.11e-05 AGCAGCTCTC AATGCGCATATGAAT GGCCAGGGGG chr11:84898008-84898108 + 42 2.30e-05 TTTAAAAATC CATTTACATGATAAC AGATATACTG chr4:181561461-181561561 + 56 2.30e-05 AATTGCTTCA CATCTACATAACTAA AGGAGACAGT chr2:17319644-17319744 + 41 2.30e-05 AAAAGACTGA AAAGTGCATGACAAT GGGAATGGGA chr5:51749130-51749230 + 59 2.52e-05 GAGAAGGACC GCTCAACATAAGAAT GGCCACGGGG chr1:160345784-160345884 - 4 2.52e-05 TGTCTTTCCT GCTTTCCATATGAAA AAG chr3:32877562-32877662 - 37 2.75e-05 TGCTGGGATC TATTAACATCTCAAA CGTGCCTCTC chr11:133727154-13372725 - 15 2.75e-05 ACGACCTGAT CTTGTACATAAAAAA TTCTAAGGAA chr19:46080876-46080976 + 22 3.00e-05 aagcgatcca aatcaccatcacaaa tgacagaaca chr15:29287540-29287640 - 73 3.00e-05 AAGGAGAGAC TCTCTGCATTTTAAT GAGGCTCCTC chr12:80178222-80178322 + 24 3.26e-05 CATACAGGAA GAATTACATGACAAT GAAGTAGGCA chr7:14596678-14596778 + 23 3.26e-05 agagaccagt aatctgcattttaac aagcccctta chrX:17620057-17620157 + 13 3.26e-05 ACAAACTTGG CTTTAACATATAAAT GTGAGGTGTC chr2:178013241-178013341 + 19 3.55e-05 TGTACCCTCG ATTTTGCATATGAAG CAGAGTGCTC chr6:107196518-107196618 - 34 3.86e-05 GATGGGTTCA GATTTGCATTTTAGA AGGATCACTC chr7:7951049-7951149 + 34 3.86e-05 tgggttagga tttcaacataagaat ggggttgggt chr17:52449497-52449597 + 78 4.19e-05 AATGCAAAGT AGTTTCCATAACAAC CGTTATAT chr17:42908227-42908327 - 11 4.54e-05 ACTGGGGATT CCTATGCATGAAAAT TTTTCCCAAG chr9:104150413-104150513 - 37 4.54e-05 CTCAAAATTT AATGCGCATGTTAAT CATTTGGGGA chr1:205456585-205456685 + 85 4.92e-05 GGGCTCGAGC CATTTGCATTTGCAT C chr5:74884634-74884734 - 63 4.92e-05 TGAACCTAGT ATCTTACATGACAAA AGGGATTTAG chr17:67297225-67297325 + 56 5.33e-05 TACTATTAAG TGTGAGCATGATAAT TGTAATAATT chr1:120125520-120125620 + 86 6.23e-05 AGCCTGAGAG CCTTAACATAACATA chr3:157995955-157996055 - 9 6.23e-05 TTTGTAAAAA CATCTGAATGTAAAA TGTGGTAT chr4:108811993-108812093 - 86 6.23e-05 . ACACTGCATTTCAAT AGCTAGGGTT chr1:55606221-55606321 + 57 7.25e-05 GGAATATCCC GTTGTGAATAAGAAT AGCCATTCTA chr17:66728392-66728492 + 84 9.73e-05 ggacacattt agtttaaatgataat ag chr1:222216454-222216554 + 41 1.05e-04 CATCACCTCA CGTTTACATCAGAGT TCCTGAGTAT chr6:14306636-14306736 - 75 1.05e-04 ATGTTAAACA AATTAGAATCTTAAT ATATGAGGTG chr14:59824819-59824919 - 73 1.29e-04 GTCACTGACT GCTACGCATTACAAT CACCTGGACT chr13:95467599-95467699 + 63 1.38e-04 ATCATGTCAG ATGTTACATAATAAA CTTGTTGGCA chr17:42430363-42430463 + 22 1.79e-04 TGTGTGTGCG CGTGTGCGTTTCAAT AAAGTTTGTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MATTTGCATRWSAAW MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr9:26742897-26742997 8.2e-09 82_[+1]_3 chr5:148331273-148331373 9.6e-09 53_[+1]_32 chr3:6463463-6463563 9.1e-08 54_[+1]_31 chr1:215825333-215825433 1.1e-07 10_[+1]_75 chr17:20865549-20865649 1.4e-07 28_[-1]_57 chr2:10273412-10273512 1.9e-07 53_[-1]_32 chr6:74108259-74108359 2.3e-07 38_[+1]_47 chr5:170044582-170044682 2.3e-07 37_[+1]_48 chr4:110308214-110308314 2.8e-07 39_[+1]_46 chr2:50424392-50424492 2.8e-07 16_[+1]_69 chr17:39831949-39832049 3.5e-07 61_[+1]_24 chr20:12663319-12663419 4.1e-07 70_[-1]_15 chr2:98386983-98387083 5.9e-07 24_[-1]_61 chr6:141771934-141772034 6.9e-07 73_[+1]_12 chr8:75354460-75354560 6.9e-07 62_[-1]_23 chr12:10358221-10358321 9.7e-07 78_[+1]_7 chr10:125514730-12551483 9.7e-07 28_[+1]_57 chr1:211550971-211551071 9.7e-07 50_[-1]_35 chr6:3165736-3165836 1.5e-06 30_[+1]_55 chr1:25845984-25846084 1.7e-06 37_[+1]_48 chr10:18424968-18425068 1.7e-06 72_[+1]_13 chr1:35859124-35859224 1.7e-06 85_[-1] chr5:64560380-64560480 2.3e-06 20_[-1]_65 chr10:49713504-49713604 2.6e-06 34_[+1]_51 chr4:12148054-12148154 2.6e-06 29_[-1]_56 chr14:91108539-91108639 3e-06 67_[-1]_18 chr4:78592281-78592381 3e-06 36_[+1]_49 chr3:34849870-34849970 3.3e-06 21_[-1]_64 chr3:167670835-167670935 3.7e-06 52_[-1]_33 chr5:80898869-80898969 4.2e-06 9_[-1]_76 chr5:5829860-5829960 4.7e-06 39_[-1]_46 chr11:128741063-12874116 4.7e-06 14_[-1]_71 chr5:124106558-124106658 5.3e-06 15_[-1]_70 chr11:73857698-73857798 5.3e-06 40_[+1]_45 chr9:121850208-121850308 5.3e-06 60_[+1]_25 chr4:12061083-12061183 5.3e-06 33_[+1]_52 chr17:48994815-48994915 5.3e-06 25_[-1]_60 chr1:165826257-165826357 6.6e-06 69_[+1]_16 chr3:175703769-175703869 6.6e-06 4_[+1]_81 chr2:162893575-162893675 7.3e-06 30_[+1]_55 chr22:47498684-47498784 8.1e-06 68_[-1]_17 chr6:47339183-47339283 9e-06 79_[+1]_6 chr3:45035172-45035272 9e-06 38_[-1]_47 chrX:39676198-39676298 1.1e-05 12_[+1]_73 chr11:133399795-13339989 1.2e-05 36_[+1]_49 chr14:23282252-23282352 1.2e-05 24_[+1]_61 chr18:50293333-50293433 1.2e-05 52_[-1]_33 chr17:73340896-73340996 1.2e-05 20_[-1]_65 chr2:177628941-177629041 1.3e-05 15_[+1]_70 chr10:44250129-44250229 1.3e-05 39_[-1]_46 chr10:99408455-99408555 1.5e-05 18_[-1]_67 chr1:88434409-88434509 1.5e-05 36_[-1]_49 chr3:193147066-193147166 1.8e-05 4_[-1]_81 chr20:2490506-2490606 1.8e-05 83_[-1]_2 chr12:106935098-10693519 2.1e-05 60_[-1]_25 chr9:913959-914059 2.1e-05 38_[-1]_47 chr11:84898008-84898108 2.3e-05 41_[+1]_44 chr4:181561461-181561561 2.3e-05 55_[+1]_30 chr2:17319644-17319744 2.3e-05 40_[+1]_45 chr5:51749130-51749230 2.5e-05 58_[+1]_27 chr1:160345784-160345884 2.5e-05 3_[-1]_82 chr3:32877562-32877662 2.8e-05 36_[-1]_49 chr11:133727154-13372725 2.8e-05 14_[-1]_71 chr19:46080876-46080976 3e-05 21_[+1]_64 chr15:29287540-29287640 3e-05 72_[-1]_13 chr12:80178222-80178322 3.3e-05 23_[+1]_62 chr7:14596678-14596778 3.3e-05 22_[+1]_63 chrX:17620057-17620157 3.3e-05 12_[+1]_73 chr2:178013241-178013341 3.5e-05 18_[+1]_67 chr6:107196518-107196618 3.9e-05 33_[-1]_52 chr7:7951049-7951149 3.9e-05 33_[+1]_52 chr17:52449497-52449597 4.2e-05 77_[+1]_8 chr17:42908227-42908327 4.5e-05 10_[-1]_75 chr9:104150413-104150513 4.5e-05 36_[-1]_49 chr1:205456585-205456685 4.9e-05 84_[+1]_1 chr5:74884634-74884734 4.9e-05 62_[-1]_23 chr17:67297225-67297325 5.3e-05 55_[+1]_30 chr1:120125520-120125620 6.2e-05 85_[+1] chr3:157995955-157996055 6.2e-05 8_[-1]_77 chr4:108811993-108812093 6.2e-05 85_[-1] chr1:55606221-55606321 7.3e-05 56_[+1]_29 chr17:66728392-66728492 9.7e-05 83_[+1]_2 chr1:222216454-222216554 0.0001 40_[+1]_45 chr6:14306636-14306736 0.0001 74_[-1]_11 chr14:59824819-59824919 0.00013 72_[-1]_13 chr13:95467599-95467699 0.00014 62_[+1]_23 chr17:42430363-42430463 0.00018 21_[+1]_64 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MATTTGCATRWSAAW MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MATTTGCATRWSAAW width=15 seqs=87 chr9:26742897-26742997 ( 83) AATTTGCATAACAAT 1 chr5:148331273-148331373 ( 54) CATTTGCATGACAAA 1 chr3:6463463-6463563 ( 55) CATCTGCATGACAAA 1 chr1:215825333-215825433 ( 11) CATTTGCATAATAAT 1 chr17:20865549-20865649 ( 29) AATTTGCATATGAAA 1 chr2:10273412-10273512 ( 54) CCTTTGCATGACAAA 1 chr6:74108259-74108359 ( 39) AATCTGCATAAGAAT 1 chr5:170044582-170044682 ( 38) CATTAGCATATCAAA 1 chr4:110308214-110308314 ( 40) CGTTTGCATATCAAA 1 chr2:50424392-50424492 ( 17) CATTAGCATATCAAT 1 chr17:39831949-39832049 ( 62) AATTAGCATAAGAAT 1 chr20:12663319-12663419 ( 71) CATGTGCATGACAAA 1 chr2:98386983-98387083 ( 25) AATTTGCATTTGAAA 1 chr6:141771934-141772034 ( 74) AATCTGCATATGAAT 1 chr8:75354460-75354560 ( 63) GCTTTGCATGACAAT 1 chr12:10358221-10358321 ( 79) AGTTTGCATATGAAA 1 chr10:125514730-12551483 ( 29) ATTTTGCATTTCAAA 1 chr1:211550971-211551071 ( 51) ATTTTGCATCACAAA 1 chr6:3165736-3165836 ( 31) CATTAGCATAAAAAA 1 chr1:25845984-25846084 ( 38) AATGTGCATAATAAT 1 chr10:18424968-18425068 ( 73) CATCTGCATTTGAAT 1 chr1:35859124-35859224 ( 86) GGTTTGCATAATAAA 1 chr5:64560380-64560480 ( 21) CTTTTACATTACAAA 1 chr10:49713504-49713604 ( 35) ATTCTGCATCACAAA 1 chr4:12148054-12148154 ( 30) AATTAACATAAGAAT 1 chr14:91108539-91108639 ( 68) CATTTCCATTACAAA 1 chr4:78592281-78592381 ( 37) GATTTCCATAACAAT 1 chr3:34849870-34849970 ( 22) AATCTGCATATAAAT 1 chr3:167670835-167670935 ( 53) ATTTAGCATTTCAAT 1 chr5:80898869-80898969 ( 10) CATGAGCATAATAAA 1 chr5:5829860-5829960 ( 40) ACTTTGCATAGCAAT 1 chr11:128741063-12874116 ( 15) GGTCTGCATAATAAT 1 chr5:124106558-124106658 ( 16) CATCCGCATTACAAA 1 chr11:73857698-73857798 ( 41) AATTAACATATGAAT 1 chr9:121850208-121850308 ( 61) CATTTGCATGACATT 1 chr4:12061083-12061183 ( 34) TTTCTGCATTACAAT 1 chr17:48994815-48994915 ( 26) GTTTTGCATGAAAAA 1 chr1:165826257-165826357 ( 70) TATTAACATGACAAA 1 chr3:175703769-175703869 ( 5) ATTTAGCATTATAAT 1 chr2:162893575-162893675 ( 31) GTTCTGCATGTGAAT 1 chr22:47498684-47498784 ( 69) AATTAGCATTGCAAA 1 chr6:47339183-47339283 ( 80) GATTTGCATGACTAA 1 chr3:45035172-45035272 ( 39) CATATGCATCACAAT 1 chrX:39676198-39676298 ( 13) CATTAGCATAGTAAA 1 chr11:133399795-13339989 ( 37) AATTAGCATAAGAGT 1 chr14:23282252-23282352 ( 25) GTTCCGCATAACAAA 1 chr18:50293333-50293433 ( 53) ACTTTGCATGGGAAA 1 chr17:73340896-73340996 ( 21) TGTTAGCATCACAAA 1 chr2:177628941-177629041 ( 16) TATTTGCATATCAGA 1 chr10:44250129-44250229 ( 40) CACTTGCATATGAAA 1 chr10:99408455-99408555 ( 19) CCTCTGAATAACAAA 1 chr1:88434409-88434509 ( 37) TGTTTACATGAGAAT 1 chr3:193147066-193147166 ( 5) CATTTGCATAAAATA 1 chr20:2490506-2490606 ( 84) TGTTTACATTTCAAA 1 chr12:106935098-10693519 ( 61) GATTAGCATGACTAA 1 chr9:913959-914059 ( 39) AATGCGCATATGAAT 1 chr11:84898008-84898108 ( 42) CATTTACATGATAAC 1 chr4:181561461-181561561 ( 56) CATCTACATAACTAA 1 chr2:17319644-17319744 ( 41) AAAGTGCATGACAAT 1 chr5:51749130-51749230 ( 59) GCTCAACATAAGAAT 1 chr1:160345784-160345884 ( 4) GCTTTCCATATGAAA 1 chr3:32877562-32877662 ( 37) TATTAACATCTCAAA 1 chr11:133727154-13372725 ( 15) CTTGTACATAAAAAA 1 chr19:46080876-46080976 ( 22) AATCACCATCACAAA 1 chr15:29287540-29287640 ( 73) TCTCTGCATTTTAAT 1 chr12:80178222-80178322 ( 24) GAATTACATGACAAT 1 chr7:14596678-14596778 ( 23) AATCTGCATTTTAAC 1 chrX:17620057-17620157 ( 13) CTTTAACATATAAAT 1 chr2:178013241-178013341 ( 19) ATTTTGCATATGAAG 1 chr6:107196518-107196618 ( 34) GATTTGCATTTTAGA 1 chr7:7951049-7951149 ( 34) TTTCAACATAAGAAT 1 chr17:52449497-52449597 ( 78) AGTTTCCATAACAAC 1 chr17:42908227-42908327 ( 11) CCTATGCATGAAAAT 1 chr9:104150413-104150513 ( 37) AATGCGCATGTTAAT 1 chr1:205456585-205456685 ( 85) CATTTGCATTTGCAT 1 chr5:74884634-74884734 ( 63) ATCTTACATGACAAA 1 chr17:67297225-67297325 ( 56) TGTGAGCATGATAAT 1 chr1:120125520-120125620 ( 86) CCTTAACATAACATA 1 chr3:157995955-157996055 ( 9) CATCTGAATGTAAAA 1 chr4:108811993-108812093 ( 86) ACACTGCATTTCAAT 1 chr1:55606221-55606321 ( 57) GTTGTGAATAAGAAT 1 chr17:66728392-66728492 ( 84) AGTTTAAATGATAAT 1 chr1:222216454-222216554 ( 41) CGTTTACATCAGAGT 1 chr6:14306636-14306736 ( 75) AATTAGAATCTTAAT 1 chr14:59824819-59824919 ( 73) GCTACGCATTACAAT 1 chr13:95467599-95467699 ( 63) ATGTTACATAATAAA 1 chr17:42430363-42430463 ( 22) CGTGTGCGTTTCAAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MATTTGCATRWSAAW MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 51600 bayes= 9.55303 E= 6.5e-031 41 63 -37 -127 93 -69 -69 -50 -300 -328 -428 175 -300 4 -96 116 -7 -196 -1309 129 -34 -196 170 -1309 -227 208 -1309 -1309 184 -1309 -428 -1309 -1309 -1309 -1309 185 69 -128 18 -42 114 -1309 -228 32 -159 108 18 -59 178 -428 -1309 -300 173 -1309 -228 -300 80 -269 -428 77 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MATTTGCATRWSAAW MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 87 E= 6.5e-031 0.367816 0.344828 0.172414 0.114943 0.528736 0.137931 0.137931 0.195402 0.034483 0.022989 0.011494 0.931034 0.034483 0.229885 0.114943 0.620690 0.264368 0.057471 0.000000 0.678161 0.218391 0.057471 0.724138 0.000000 0.057471 0.942529 0.000000 0.000000 0.988506 0.000000 0.011494 0.000000 0.000000 0.000000 0.000000 1.000000 0.448276 0.091954 0.252874 0.206897 0.609195 0.000000 0.045977 0.344828 0.091954 0.471264 0.252874 0.183908 0.954023 0.011494 0.000000 0.034483 0.919540 0.000000 0.045977 0.034483 0.482759 0.034483 0.011494 0.471264 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MATTTGCATRWSAAW MEME-1 regular expression -------------------------------------------------------------------------------- [AC]AT[TC][TA][GA]CAT[AGT][AT][CG]AA[AT] -------------------------------------------------------------------------------- Time 296.42 secs. ******************************************************************************** ******************************************************************************** MOTIF WVAAAAVAAAARAAAAVAAR MEME-2 width = 20 sites = 74 llr = 795 E-value = 1.2e-030 ******************************************************************************** -------------------------------------------------------------------------------- Motif WVAAAAVAAAARAAAAVAAR MEME-2 Description -------------------------------------------------------------------------------- Simplified A 62788747968587783955 pos.-specific C :2:::13::1:1113:3111 probability G 143:21321223:1:24:24 matrix T 42:2:2:1:1:1:1::::2: bits 2.2 1.9 1.7 1.5 Relative 1.3 * * * * * Entropy 1.1 * * * * * ** * (15.5 bits) 0.9 *** * * * ** * 0.6 * *** ** * **** * * 0.4 * **************** * 0.2 ******************** 0.0 -------------------- Multilevel AGAAAAAAAAAAAAAAGAAA consensus TAG GG G C A G sequence C C C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WVAAAAVAAAARAAAAVAAR MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------------------- chr15:55133175-55133275 + 22 2.53e-11 TCAATACCAC AGAAAAAAAAAAAAAAGAAG CCAATTTCCT chr9:11038277-11038377 + 46 5.14e-10 agaaaaCAAA ACAAAAAAAAAAAAAAAAAA CCTTAACATT chr6:25380068-25380168 - 67 1.53e-09 CATGGAGGTA AGAAAAGGAAAGAAAAAAAG TGCATAAAGA chr11:126175522-12617562 - 39 1.92e-08 ACAAACAAAC AAAAAACAACAAAAAACAAG GCCCAGCGCA chr4:17763555-17763655 - 35 2.30e-08 ACATATCAAA ACAAAACAAAACAAAACAAA ATGAAGAGCC chr11:14081031-14081131 + 7 3.28e-08 ctgggg aGGAAAGGAGAAAAAACAAG GCAGAGAGAC chr16:74194688-74194788 + 77 3.90e-08 tgtgcaagtt acaaataaagaaaaaagaaa tgag chr18:3409167-3409267 + 45 7.55e-08 atcctgtctc taaaaacaaaacaaaacaaa CAAAGCTATA chr2:42388623-42388723 - 14 1.40e-07 GAAAAGAAAT AGGAAAAAAAATAAAAAATG CATAATTGCT chr2:147433261-147433361 + 9 1.40e-07 GATGCAGA AGAAAAAAAAATAACACATG TATTTTATTC chr9:18144064-18144164 - 66 1.62e-07 GAAAGAAAGA AAGAAAGAAAGAAAAAGATG TATATACTAT chr6:14306636-14306736 - 9 1.88e-07 AGAAGAAAAA ACATATGAAAAAAAAAAAAG ACTGGCCA chr2:232235412-232235512 + 78 2.17e-07 CACAGGGAAA ACAAAAGGACAGAACAAAAG GCC chr11:55544965-55545065 - 31 2.17e-07 AGGAGGTTCC TCAAGAAAAAAAAAAGAAAA GAATTACCAT chr6:28615859-28615959 + 42 2.17e-07 TTATTAAAGG GGGAAAGAAAAAAAAACACG CACACCCTAa chr1:168228922-168229022 - 17 2.87e-07 ACTGCCATCA AAAAGACAAAAGATAACAAG TGTTGGCAAG chr10:125514730-12551483 + 79 3.29e-07 aggagaaagg aggaaagaagagaaaaaagc ca chr4:181561461-181561561 + 12 4.31e-07 GGCTAGACCC AAAAGAAAAAAGAAAGAAGA TTCTAATTGC chr7:108767183-108767283 + 50 5.59e-07 catcttcaac tgaaacaaagaaaaaagata tgaggaagtt chr10:16033641-16033741 - 77 6.35e-07 CAAC AGGAAAAGAAAGAAAAGGAA TGTTGACAGT chr1:218065970-218066070 - 44 6.35e-07 GTTCTCTACT TAATAAGGAAAGAACAAAAA TTGTATGCTG chr16:13416239-13416339 - 64 7.20e-07 GTTTCTATGC AAAAGAGAAGAAAACAGACA TTCCCCACTT chr15:65847616-65847716 + 55 9.21e-07 GTTGCAGGTG AGAAAAATAGAAATCAGAAA GGGTGAAGGC chr4:177772209-177772309 + 13 9.21e-07 caaaaaacaa acaaacaaaaaaaacaaaca aacaaggcaa chr15:52403459-52403559 + 48 1.04e-06 agactccgcc tcaaagaaaaaaagaaaaaG GTCTAAATGG chr8:142231208-142231308 + 27 1.04e-06 TTAATTCAAA AGAAAACAACAACCAAGAAG GCAAAACACA chr7:70375877-70375977 + 79 1.17e-06 TAGATGGAGG ACAAAAAAGAGACAAAGAAA GA chr5:72989500-72989600 - 56 1.48e-06 TTAAGTTAGT AGAAAACAAAAGCCAGCAAA GAAAACCAAC chr20:36965840-36965940 - 35 1.66e-06 TGAATAATAA ATAAATGAACATAAAACAAG AAACAATACC chr12:32223757-32223857 - 35 1.85e-06 ATAATTTTTT TAAAGAGGAAAGAACAAACA CGCCATAGTG chr4:122200779-122200879 + 7 2.87e-06 CCCTGT AGGAAAAAAAAGAGCAGATC CCTTCAAGAA chr16:53237300-53237400 - 72 2.87e-06 GAAGAGGAC ATAAAACAGAAGATAGCAAG CCTTGAGCAA chr9:15255513-15255613 + 16 3.19e-06 GATGAAGGCG TCAGAAAAAAAAAAAGGATG TCAGGTGAAA chr7:42261886-42261986 + 31 3.53e-06 AGAATGGCTA TGAAATCTACAAAAAGGAAA GGCATTAGTG chr11:56427279-56427379 - 22 3.92e-06 AAATTGAATG ATAAAAGAAGGAAACGCAGG GGAATTTTGT chr1:178859907-178860007 + 57 4.33e-06 TGGGTTTGCC TGAAATGTGAAAAACACAAG AATTGCCTTT chr9:123115969-123116069 + 73 4.79e-06 CAAACAGAAA AGAAGAGGAGGGAAAAGAGC TCTTTAAG chr11:15980061-15980161 - 73 4.79e-06 TCTTCCAA ATAAAACAAAATAAAACCAC ACAAAGCATT chr3:45035172-45035272 - 78 4.79e-06 GTT AGAGAGAGAAAGAAAACACA GGCTGGTAAT chr17:9182944-9183044 - 80 5.29e-06 T TGAAGAGGAAAACCAAAAAA CAGATGGGGT chr11:77251415-77251515 + 22 7.06e-06 TCCCTTCCCT GTGAAGGAAAGGAAAAAAAG TGGATTTCGG chr7:83839285-83839385 + 29 7.75e-06 CGAGATATTC ACATAGCGAAAGAAAACCAA TATTATTGAT chr20:40359569-40359669 + 40 8.51e-06 ACCTAACTAT AGAAATGAAAAAGGAAGAAA GTCATGATGA chr15:60688509-60688609 + 73 8.51e-06 TCTAAGGAGG TGGAAGGTGGAAAAAAGAAA GTGGAACA chr15:39974496-39974596 + 5 9.32e-06 ACTT TGGAAAAAAAAAAGCAGCTG GAAATATAAA chr16:75899772-75899872 - 57 1.02e-05 GACAATTTGG AGGGAAAAAAAGATAAGCAG AGTGGTGTTT chr8:50711242-50711342 + 75 1.12e-05 tgtagagaat tgaagaaaatgcaaaagagg cttatc chr6:139100866-139100966 + 43 1.12e-05 TTACAGAGTG ATGAAAGAAAAGACCAAACC TCAGGGTGGA chr7:149388186-149388286 + 10 1.12e-05 AGAGTATTC TGAAGCAGAAAGAAAACCAG Cgggggggca chr2:189310180-189310280 - 41 1.22e-05 GTGGTAGGAA ATAAAAATAGATATAAGAGA CATGATGAGG chrX:2436119-2436219 - 77 1.22e-05 ATAT GGGAATGTAAAGCAAAGAAA AACTGTTTTT chr18:65280002-65280102 + 46 1.22e-05 tcacttagga tagaaacagaaaatcaaatg ctttctattt chr9:104150413-104150513 + 7 1.22e-05 ccccac atgaAAAAATGAATAAaaga tccccaaatg chr16:13253716-13253816 + 78 1.33e-05 ttctggtaga ggaaagcgaaaataaacaag aaa chr8:28352637-28352737 - 15 1.45e-05 CTTTTGTTCT TAAAAACAAAGCCAAGAAAA GCACCCTTGG chr5:126432432-126432532 - 43 1.58e-05 ACCTGTGCAT ACGTAACAAAGACAAGGAGA GAGCGTTCTA chr3:18915279-18915379 + 1 1.58e-05 . TAGAGAAGGCAGAACAGAAA TTAAAACCCA chr8:20138387-20138487 - 35 1.71e-05 GGGGAATGAT TTGAAAGAACAGATAAGCGA ACTGTGAGCT chr4:34930138-34930238 + 65 1.71e-05 attagtgccc ttataagaagagacaggaga gcttattgtc chr3:106932103-106932203 - 42 1.71e-05 TCCCCGGTCT ACATAAAGAAAATACACACA AACCTCTCAT chr10:14686423-14686523 + 25 1.86e-05 GTACATTAAC AGAAATAAATAATACAGATA TGTCTGATGT chr7:83310705-83310805 + 46 1.86e-05 actatgctca ttataacagtaaaaaacaca ccctggatgg chr2:171050015-171050115 - 80 2.02e-05 G ACATAACAACAAAAAAAGCA CACTTACTCA chr10:36872083-36872183 + 53 2.02e-05 gcgttggcag tagaatcaaaacagaacaga gcctgggact chr3:193147066-193147166 + 78 2.19e-05 ccatcaacaa ataaatggatagataaaatg tgg chr5:76116105-76116205 + 39 2.57e-05 CTCCTCTTCA TAAAGACGAAGTAAAAGAGC AAGTCACAGT chr15:63338429-63338529 - 16 2.99e-05 GACTATTTTT TAGTAAATAAAAAACGAATA CTCTCAATAT chr18:73439537-73439637 - 68 3.23e-05 ACAGGGAGGG AGATGACAGGAAAACACAGC TGCTAAGAGA chr5:77703710-77703810 - 53 3.75e-05 ATTTAAATCT ATGAGGAAACAAACCACAAG GGTCCACAGA chr15:98795444-98795544 - 65 5.35e-05 AGAGAACAAC TAAAAAAACCAGATAAAATA TAGAAATCAT chr12:31740007-31740107 - 2 6.56e-05 CTTAAGGGTT GAGTATAGATAGAAAAGAGA G chr3:175703769-175703869 - 63 9.63e-05 TTGAAACAAA TGAAAGCAGAGACACGAATA TCAAAATCTC chr6:153162468-153162568 + 47 1.02e-04 aaactatggt tcatacgtaggaaaaaaacg tggccattag chr11:92891275-92891375 - 54 1.37e-04 ATCCACAGTT ACATATCAGAGTATAGGAAA CACGTGTCTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WVAAAAVAAAARAAAAVAAR MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr15:55133175-55133275 2.5e-11 21_[+2]_59 chr9:11038277-11038377 5.1e-10 45_[+2]_35 chr6:25380068-25380168 1.5e-09 66_[-2]_14 chr11:126175522-12617562 1.9e-08 38_[-2]_42 chr4:17763555-17763655 2.3e-08 34_[-2]_46 chr11:14081031-14081131 3.3e-08 6_[+2]_74 chr16:74194688-74194788 3.9e-08 76_[+2]_4 chr18:3409167-3409267 7.6e-08 44_[+2]_36 chr2:42388623-42388723 1.4e-07 13_[-2]_67 chr2:147433261-147433361 1.4e-07 8_[+2]_72 chr9:18144064-18144164 1.6e-07 65_[-2]_15 chr6:14306636-14306736 1.9e-07 8_[-2]_72 chr2:232235412-232235512 2.2e-07 77_[+2]_3 chr11:55544965-55545065 2.2e-07 30_[-2]_50 chr6:28615859-28615959 2.2e-07 41_[+2]_39 chr1:168228922-168229022 2.9e-07 16_[-2]_64 chr10:125514730-12551483 3.3e-07 78_[+2]_2 chr4:181561461-181561561 4.3e-07 11_[+2]_69 chr7:108767183-108767283 5.6e-07 49_[+2]_31 chr10:16033641-16033741 6.4e-07 76_[-2]_4 chr1:218065970-218066070 6.4e-07 43_[-2]_37 chr16:13416239-13416339 7.2e-07 63_[-2]_17 chr15:65847616-65847716 9.2e-07 54_[+2]_26 chr4:177772209-177772309 9.2e-07 12_[+2]_68 chr15:52403459-52403559 1e-06 47_[+2]_33 chr8:142231208-142231308 1e-06 26_[+2]_54 chr7:70375877-70375977 1.2e-06 78_[+2]_2 chr5:72989500-72989600 1.5e-06 55_[-2]_25 chr20:36965840-36965940 1.7e-06 34_[-2]_46 chr12:32223757-32223857 1.9e-06 34_[-2]_46 chr4:122200779-122200879 2.9e-06 6_[+2]_74 chr16:53237300-53237400 2.9e-06 71_[-2]_9 chr9:15255513-15255613 3.2e-06 15_[+2]_65 chr7:42261886-42261986 3.5e-06 30_[+2]_50 chr11:56427279-56427379 3.9e-06 21_[-2]_59 chr1:178859907-178860007 4.3e-06 56_[+2]_24 chr9:123115969-123116069 4.8e-06 72_[+2]_8 chr11:15980061-15980161 4.8e-06 72_[-2]_8 chr3:45035172-45035272 4.8e-06 77_[-2]_3 chr17:9182944-9183044 5.3e-06 79_[-2]_1 chr11:77251415-77251515 7.1e-06 21_[+2]_59 chr7:83839285-83839385 7.8e-06 28_[+2]_52 chr20:40359569-40359669 8.5e-06 39_[+2]_41 chr15:60688509-60688609 8.5e-06 72_[+2]_8 chr15:39974496-39974596 9.3e-06 4_[+2]_76 chr16:75899772-75899872 1e-05 56_[-2]_24 chr8:50711242-50711342 1.1e-05 74_[+2]_6 chr6:139100866-139100966 1.1e-05 42_[+2]_38 chr7:149388186-149388286 1.1e-05 9_[+2]_71 chr2:189310180-189310280 1.2e-05 40_[-2]_40 chrX:2436119-2436219 1.2e-05 76_[-2]_4 chr18:65280002-65280102 1.2e-05 45_[+2]_35 chr9:104150413-104150513 1.2e-05 6_[+2]_74 chr16:13253716-13253816 1.3e-05 77_[+2]_3 chr8:28352637-28352737 1.4e-05 14_[-2]_66 chr5:126432432-126432532 1.6e-05 42_[-2]_38 chr3:18915279-18915379 1.6e-05 [+2]_80 chr8:20138387-20138487 1.7e-05 34_[-2]_46 chr4:34930138-34930238 1.7e-05 64_[+2]_16 chr3:106932103-106932203 1.7e-05 41_[-2]_39 chr10:14686423-14686523 1.9e-05 24_[+2]_56 chr7:83310705-83310805 1.9e-05 45_[+2]_35 chr2:171050015-171050115 2e-05 79_[-2]_1 chr10:36872083-36872183 2e-05 52_[+2]_28 chr3:193147066-193147166 2.2e-05 77_[+2]_3 chr5:76116105-76116205 2.6e-05 38_[+2]_42 chr15:63338429-63338529 3e-05 15_[-2]_65 chr18:73439537-73439637 3.2e-05 67_[-2]_13 chr5:77703710-77703810 3.7e-05 52_[-2]_28 chr15:98795444-98795544 5.4e-05 64_[-2]_16 chr12:31740007-31740107 6.6e-05 1_[-2]_79 chr3:175703769-175703869 9.6e-05 62_[-2]_18 chr6:153162468-153162568 0.0001 46_[+2]_34 chr11:92891275-92891375 0.00014 53_[-2]_27 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WVAAAAVAAAARAAAAVAAR MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WVAAAAVAAAARAAAAVAAR width=20 seqs=74 chr15:55133175-55133275 ( 22) AGAAAAAAAAAAAAAAGAAG 1 chr9:11038277-11038377 ( 46) ACAAAAAAAAAAAAAAAAAA 1 chr6:25380068-25380168 ( 67) AGAAAAGGAAAGAAAAAAAG 1 chr11:126175522-12617562 ( 39) AAAAAACAACAAAAAACAAG 1 chr4:17763555-17763655 ( 35) ACAAAACAAAACAAAACAAA 1 chr11:14081031-14081131 ( 7) AGGAAAGGAGAAAAAACAAG 1 chr16:74194688-74194788 ( 77) ACAAATAAAGAAAAAAGAAA 1 chr18:3409167-3409267 ( 45) TAAAAACAAAACAAAACAAA 1 chr2:42388623-42388723 ( 14) AGGAAAAAAAATAAAAAATG 1 chr2:147433261-147433361 ( 9) AGAAAAAAAAATAACACATG 1 chr9:18144064-18144164 ( 66) AAGAAAGAAAGAAAAAGATG 1 chr6:14306636-14306736 ( 9) ACATATGAAAAAAAAAAAAG 1 chr2:232235412-232235512 ( 78) ACAAAAGGACAGAACAAAAG 1 chr11:55544965-55545065 ( 31) TCAAGAAAAAAAAAAGAAAA 1 chr6:28615859-28615959 ( 42) GGGAAAGAAAAAAAAACACG 1 chr1:168228922-168229022 ( 17) AAAAGACAAAAGATAACAAG 1 chr10:125514730-12551483 ( 79) AGGAAAGAAGAGAAAAAAGC 1 chr4:181561461-181561561 ( 12) AAAAGAAAAAAGAAAGAAGA 1 chr7:108767183-108767283 ( 50) TGAAACAAAGAAAAAAGATA 1 chr10:16033641-16033741 ( 77) AGGAAAAGAAAGAAAAGGAA 1 chr1:218065970-218066070 ( 44) TAATAAGGAAAGAACAAAAA 1 chr16:13416239-13416339 ( 64) AAAAGAGAAGAAAACAGACA 1 chr15:65847616-65847716 ( 55) AGAAAAATAGAAATCAGAAA 1 chr4:177772209-177772309 ( 13) ACAAACAAAAAAAACAAACA 1 chr15:52403459-52403559 ( 48) TCAAAGAAAAAAAGAAAAAG 1 chr8:142231208-142231308 ( 27) AGAAAACAACAACCAAGAAG 1 chr7:70375877-70375977 ( 79) ACAAAAAAGAGACAAAGAAA 1 chr5:72989500-72989600 ( 56) AGAAAACAAAAGCCAGCAAA 1 chr20:36965840-36965940 ( 35) ATAAATGAACATAAAACAAG 1 chr12:32223757-32223857 ( 35) TAAAGAGGAAAGAACAAACA 1 chr4:122200779-122200879 ( 7) AGGAAAAAAAAGAGCAGATC 1 chr16:53237300-53237400 ( 72) ATAAAACAGAAGATAGCAAG 1 chr9:15255513-15255613 ( 16) TCAGAAAAAAAAAAAGGATG 1 chr7:42261886-42261986 ( 31) TGAAATCTACAAAAAGGAAA 1 chr11:56427279-56427379 ( 22) ATAAAAGAAGGAAACGCAGG 1 chr1:178859907-178860007 ( 57) TGAAATGTGAAAAACACAAG 1 chr9:123115969-123116069 ( 73) AGAAGAGGAGGGAAAAGAGC 1 chr11:15980061-15980161 ( 73) ATAAAACAAAATAAAACCAC 1 chr3:45035172-45035272 ( 78) AGAGAGAGAAAGAAAACACA 1 chr17:9182944-9183044 ( 80) TGAAGAGGAAAACCAAAAAA 1 chr11:77251415-77251515 ( 22) GTGAAGGAAAGGAAAAAAAG 1 chr7:83839285-83839385 ( 29) ACATAGCGAAAGAAAACCAA 1 chr20:40359569-40359669 ( 40) AGAAATGAAAAAGGAAGAAA 1 chr15:60688509-60688609 ( 73) TGGAAGGTGGAAAAAAGAAA 1 chr15:39974496-39974596 ( 5) TGGAAAAAAAAAAGCAGCTG 1 chr16:75899772-75899872 ( 57) AGGGAAAAAAAGATAAGCAG 1 chr8:50711242-50711342 ( 75) TGAAGAAAATGCAAAAGAGG 1 chr6:139100866-139100966 ( 43) ATGAAAGAAAAGACCAAACC 1 chr7:149388186-149388286 ( 10) TGAAGCAGAAAGAAAACCAG 1 chr2:189310180-189310280 ( 41) ATAAAAATAGATATAAGAGA 1 chrX:2436119-2436219 ( 77) GGGAATGTAAAGCAAAGAAA 1 chr18:65280002-65280102 ( 46) TAGAAACAGAAAATCAAATG 1 chr9:104150413-104150513 ( 7) ATGAAAAAATGAATAAAAGA 1 chr16:13253716-13253816 ( 78) GGAAAGCGAAAATAAACAAG 1 chr8:28352637-28352737 ( 15) TAAAAACAAAGCCAAGAAAA 1 chr5:126432432-126432532 ( 43) ACGTAACAAAGACAAGGAGA 1 chr3:18915279-18915379 ( 1) TAGAGAAGGCAGAACAGAAA 1 chr8:20138387-20138487 ( 35) TTGAAAGAACAGATAAGCGA 1 chr4:34930138-34930238 ( 65) TTATAAGAAGAGACAGGAGA 1 chr3:106932103-106932203 ( 42) ACATAAAGAAAATACACACA 1 chr10:14686423-14686523 ( 25) AGAAATAAATAATACAGATA 1 chr7:83310705-83310805 ( 46) TTATAACAGTAAAAAACACA 1 chr2:171050015-171050115 ( 80) ACATAACAACAAAAAAAGCA 1 chr10:36872083-36872183 ( 53) TAGAATCAAAACAGAACAGA 1 chr3:193147066-193147166 ( 78) ATAAATGGATAGATAAAATG 1 chr5:76116105-76116205 ( 39) TAAAGACGAAGTAAAAGAGC 1 chr15:63338429-63338529 ( 16) TAGTAAATAAAAAACGAATA 1 chr18:73439537-73439637 ( 68) AGATGACAGGAAAACACAGC 1 chr5:77703710-77703810 ( 53) ATGAGGAAACAAACCACAAG 1 chr15:98795444-98795544 ( 65) TAAAAAAACCAGATAAAATA 1 chr12:31740007-31740107 ( 2) GAGTATAGATAGAAAAGAGA 1 chr3:175703769-175703869 ( 63) TGAAAGCAGAGACACGAATA 1 chr6:153162468-153162568 ( 47) TCATACGTAGGAAAAAAACG 1 chr11:92891275-92891375 ( 54) ACATATCAGAGTATAGGAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WVAAAAVAAAARAAAAVAAR MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 20 n= 48600 bayes= 10.2312 E= 1.2e-030 107 -1285 -172 34 -36 -5 81 -66 134 -1285 41 -1285 150 -1285 -246 -66 157 -1285 -34 -1285 129 -204 -105 -77 50 35 54 -1285 126 -1285 4 -136 162 -404 -72 -1285 113 -72 -34 -177 157 -1285 -34 -1285 85 -172 60 -155 160 -105 -404 -277 134 -146 -172 -90 140 28 -1285 -1285 157 -1285 -34 -1285 23 41 76 -1285 169 -146 -304 -1285 85 -72 -24 -66 93 -124 76 -1285 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WVAAAAVAAAARAAAAVAAR MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 20 nsites= 74 E= 1.2e-030 0.581081 0.000000 0.067568 0.351351 0.216216 0.216216 0.391892 0.175676 0.702703 0.000000 0.297297 0.000000 0.783784 0.000000 0.040541 0.175676 0.824324 0.000000 0.175676 0.000000 0.675676 0.054054 0.108108 0.162162 0.391892 0.283784 0.324324 0.000000 0.662162 0.000000 0.229730 0.108108 0.851351 0.013514 0.135135 0.000000 0.608108 0.135135 0.175676 0.081081 0.824324 0.000000 0.175676 0.000000 0.500000 0.067568 0.337838 0.094595 0.837838 0.108108 0.013514 0.040541 0.702703 0.081081 0.067568 0.148649 0.729730 0.270270 0.000000 0.000000 0.824324 0.000000 0.175676 0.000000 0.324324 0.297297 0.378378 0.000000 0.891892 0.081081 0.027027 0.000000 0.500000 0.135135 0.189189 0.175676 0.527027 0.094595 0.378378 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WVAAAAVAAAARAAAAVAAR MEME-2 regular expression -------------------------------------------------------------------------------- [AT][GAC][AG]AAA[AGC][AG]AAA[AG]AA[AC]A[GAC]AA[AG] -------------------------------------------------------------------------------- Time 572.46 secs. ******************************************************************************** ******************************************************************************** MOTIF SSGGGHBKVSRGGBSMGVGSSVGSSSSS MEME-3 width = 28 sites = 53 llr = 616 E-value = 5.7e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif SSGGGHBKVSRGGBSMGVGSSVGSSSSS MEME-3 Description -------------------------------------------------------------------------------- Simplified A :12::22:3233::22241::4::2:1: pos.-specific C 54223421332:3434221543343345 probability G 3367713644467352538552745554 matrix T 121::23312:1:3:211:::1:1:2:2 bits 2.2 1.9 1.7 1.5 Relative 1.3 * Entropy 1.1 ** * * * * (16.8 bits) 0.9 ** * * *** * * 0.6 * ** * ** *** ****** 0.4 * *** * ***** * *** ****** 0.2 ****** ********************* 0.0 ---------------------------- Multilevel CCGGGCGGGGGGGCGCGAGCGAGCGGGC consensus GG CCTTTACAACGCACG GCCCGCCCG sequence AC C C T C G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSGGGHBKVSRGGBSMGVGSSVGSSSSS MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------------- chr16:2570163-2570263 + 38 4.50e-12 GGGGGCGGgg gcgggcgggcgggcgggcgggcgCCGGG CGCTGCCGGT chr2:237088288-237088388 - 55 3.59e-10 CAGCGCCCGG CCGGGACGGGAGGTGCGGGGCTGGCCCC CACTCGCGAT chr15:101835389-10183548 - 2 1.34e-09 ATTGGTGCTG CCTGGCGGCGGGGCGCGGGGCACGCTGG G chr20:2846317-2846417 + 61 1.34e-08 CTTGTCTGAG GAGGGTGGAGGGGGCACAGGGAGGGTGC ATATGGGAGG chr8:71520764-71520864 - 29 1.81e-08 GGATGGCCAG GAGGGCAGGAGGGCACCCGGCCGCGGCC TCAGGCTGCT chr21:45284115-45284215 + 62 2.09e-08 TCTGGGATCG GCCGCTGGCCAGGTGCAAGGGAGGGGGG ACGGCAGCCG chr4:113444214-113444314 + 65 2.79e-08 GGAGCCAGGG CCGGGTCTCCAGGCCGGGAGGGGGCGGC CGCGGTGC chr22:28838257-28838357 - 26 3.69e-08 CAGCTGGTTC CGGGGCGGCGGGCCGAGAGGCCTCCTGC CTGAGCGCCT chr11:615700-615800 - 14 3.69e-08 GAGGGTCGGG CGGGGAGGGAGGCGGAGGCGGAGGCGGG GTTCCGCGGA chr16:68278907-68279007 + 68 3.69e-08 AGCTGGGTTC CCGGGTGGGCGACTGACAGCCCGGAGCC AGGCG chr15:41136421-41136521 + 60 5.55e-08 GTCCCTGGAG GGCGCGTGGGAGGGCCGGGCCCGTGCGC CCTCTTCGAT chr3:185825402-185825502 - 60 6.35e-08 ATAAAACCGG GCCCGCTGCGCGCCACAGGGGAGGGGCC TGGATCGCGC chr15:44719328-44719428 - 1 6.35e-08 ACGGAACTGC TTGGGCAGAGCTGGGAGGGGGAGCGCGC chr2:191184475-191184575 - 18 1.55e-07 GTCATCTGTG CCCGGCGGCGCAGGACGGCGGTGGGCGG GGCTCACGCG chr6:169357077-169357177 - 6 2.51e-07 CACCAAGTGG CTGGCCTGACAGCTCCCAGCCTGCCCGG CTGAG chr11:64480674-64480774 - 63 2.82e-07 TGCTGCTGAC CCGCGACGCGCGCCGCACGGCGCTGGCG GTGGACGGCG chr4:1044696-1044796 - 31 2.82e-07 CTAGACCAAG GGAGCCTGAGCGGTGCCCGCGCCCGGCT GGGTTTGTTG chr13:49550387-49550487 + 4 3.99e-07 CGG CCCCGTCGAGGGGCGCGGACCACCCCCT TCTGTGGGCG chr14:23292106-23292206 + 2 4.46e-07 G TCGGGCAGCAAAGCCGCCGCCAGGAGGC AGCGCTTAAT chr11:126175522-12617562 + 6 6.22e-07 aagtg ctgggattataggcatgagcgactgcgc tgggccttgt chr3:181444394-181444494 - 10 6.22e-07 CCCGGCTGCC GCAGCTCTGAAAGGCAGGGCCCGCGGCG GCGTTTCGA chr7:139044250-139044350 + 69 6.93e-07 CGCCATCACC GCGGGCAGCGCAGCCTTAGCCGCCAGCC CTAC chr14:68066960-68067060 - 9 9.52e-07 GGCGCGCAAC TGAGGCTGCGCAGGCTTAGGGCGGGGCG TGGTGACG chr17:42430363-42430463 - 71 1.17e-06 TG GGGCCCTGGGGAGGGCAGGCAGGGCGGC AAATCAGACA chr9:131171422-131171522 + 19 1.17e-06 TCGCCCCGAG CTGGGGCGAGATGTTGGGGGGAGGGGGT CAGCGGGAAC chr7:70491830-70491930 + 8 1.17e-06 caaagtg cggggattacaggtgtgagcctccatgc ctggccAGAG chr17:17494899-17494999 - 12 1.17e-06 CCGGTTCCGG GGGCGCGTGGCTGCAGCGGGGCCCGCGT GGTGCCTCCT chr15:98964882-98964982 + 22 1.30e-06 ACTCTGGTGG GACCGCGGGAAGCCAGGAGGCGGGCGCG CCCCGGGAGC chr10:99205963-99206063 + 5 1.44e-06 ccgg ccggggcgccgAGTCGGAGGGGGTGGCA GTGAGCGGCG chr5:133747530-133747630 - 4 1.59e-06 GCCCCTCTGG CCGGCAGGCGGTGGCGCAGTGCGCGTCG GGA chr11:73857698-73857798 - 70 1.59e-06 GTG CTGGGATTACAGACGTGAGCCACCGCGC CTGGCAGGAA chr5:156692860-156692960 + 54 1.93e-06 CCTGGGTGCG CCGGCGGTACAGCGGAGAGCGTGGAGAG ACCCTCGCCG chr20:18447875-18447975 + 24 1.93e-06 GAAGCTGTAG CGGCGCCTGTAAGTGGGCCGGAGCAGGC GCAGCTTGGC chr1:22378932-22379032 - 40 1.93e-06 CCTGGCTCCG CCCGCCTGTCGCGCACGCGCGGGCCGGC GCAGCTCGTG chr17:27045033-27045133 - 1 2.35e-06 GAAGGCGCAG CCGGGTATAGAGGTGCAGGGGAGAGCAG chr7:1309662-1309762 + 51 2.84e-06 AAGTGCCAGG CAGGCTGGGCGGCTCCCAGTCTGGGGCG ACCTGGGCAC chr15:52122229-52122329 - 7 3.42e-06 AGGGGGCCGG TCCCGAACCCGGGCGCCCGGGCCGCGGG TGATTC chr16:16947118-16947218 - 55 3.75e-06 TCCCCAAGTG CTAGGATTGCAAGCGTGAGCCACCATGC CCAGCCGAAA chr19:1745295-1745395 + 33 3.75e-06 TCTCTTCTTG CCGGCGCTATGACCCCTGGGGAGCCCCT GCCCCCAGGC chr19:42536812-42536912 - 21 4.11e-06 GGGGTTTGGC CAGGGCAGCTGGCGAATGGCGAGGCCAG TTTCCACTAT chr2:70613174-70613274 - 43 4.92e-06 CCCTGCAGGG GTGAGCTGGTGGGGCAGCGCCCCCCTCC GGCTTCACAT chr1:15853358-15853458 + 59 6.98e-06 CTTCCCGGCG TGACGCGCGGAACCGCGGACGCGGCGGG GCCAGGCCGA chr2:177628941-177629041 + 66 1.06e-05 AGCTGTGTGG GCACATTGGTGGGGGGTCGGGGGGGCGC TGGTCAG chr7:157126189-157126289 + 47 1.25e-05 gcctgagtgg ttgggactataggtgtgtgccaccgcac ttggctaatt chr20:30311262-30311362 - 17 1.72e-05 GGTTGCCTAG CAACGGGGCGGTGGCTCGGCGGGTACCC GGCCTAGTGA chr17:8023567-8023667 - 60 1.86e-05 GTGCAGGTAG CGTGGCCGAGCGGTCTAAGGCGCTGGAT TTAGGCTCCA chr4:111544384-111544484 - 1 2.92e-05 GTAGACCCAG TGCGCACGGCGAGGCAGTAGCCCGGCCC chr1:207108913-207109013 - 7 2.92e-05 GACAGCGAGG GGTGGGTTAAGGCCCAGTACGAGGGCCG CCTCTC chr2:26136569-26136669 - 41 4.18e-05 AGTAAATTAG CCGGACGTGGTGGCACATGCGCCTGTGG TCCCACAGTA chr15:70390021-70390121 - 52 4.18e-05 TTTTTTTTTG GTGTGTGTGTGTGTGCGTGCGCGCGTGT GTGTGTGTTG chr8:33370494-33370594 + 48 7.70e-05 CCACCCCCAG GTACCTGCAACGGCTCGCGCCCGCCGGT GTCTAACAGG chr13:103498096-10349819 + 11 1.44e-04 CCGCCCTGCG CGTCGTATTAGACGGAAACCGAGCGGGC CCATTTTTCA chr8:126103983-126104083 - 35 2.29e-04 AAAGTGAGAG CGGGCTCTTGCGTCATCAGCCGTCGCCG GCGAGTGGTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSGGGHBKVSRGGBSMGVGSSVGSSSSS MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:2570163-2570263 4.5e-12 37_[+3]_35 chr2:237088288-237088388 3.6e-10 54_[-3]_18 chr15:101835389-10183548 1.3e-09 1_[-3]_71 chr20:2846317-2846417 1.3e-08 60_[+3]_12 chr8:71520764-71520864 1.8e-08 28_[-3]_44 chr21:45284115-45284215 2.1e-08 61_[+3]_11 chr4:113444214-113444314 2.8e-08 64_[+3]_8 chr22:28838257-28838357 3.7e-08 25_[-3]_47 chr11:615700-615800 3.7e-08 13_[-3]_59 chr16:68278907-68279007 3.7e-08 67_[+3]_5 chr15:41136421-41136521 5.6e-08 59_[+3]_13 chr3:185825402-185825502 6.3e-08 59_[-3]_13 chr15:44719328-44719428 6.3e-08 [-3]_72 chr2:191184475-191184575 1.6e-07 17_[-3]_55 chr6:169357077-169357177 2.5e-07 5_[-3]_67 chr11:64480674-64480774 2.8e-07 62_[-3]_10 chr4:1044696-1044796 2.8e-07 30_[-3]_42 chr13:49550387-49550487 4e-07 3_[+3]_69 chr14:23292106-23292206 4.5e-07 1_[+3]_71 chr11:126175522-12617562 6.2e-07 5_[+3]_67 chr3:181444394-181444494 6.2e-07 9_[-3]_63 chr7:139044250-139044350 6.9e-07 68_[+3]_4 chr14:68066960-68067060 9.5e-07 8_[-3]_64 chr17:42430363-42430463 1.2e-06 70_[-3]_2 chr9:131171422-131171522 1.2e-06 18_[+3]_54 chr7:70491830-70491930 1.2e-06 7_[+3]_65 chr17:17494899-17494999 1.2e-06 11_[-3]_61 chr15:98964882-98964982 1.3e-06 21_[+3]_51 chr10:99205963-99206063 1.4e-06 4_[+3]_68 chr5:133747530-133747630 1.6e-06 3_[-3]_69 chr11:73857698-73857798 1.6e-06 69_[-3]_3 chr5:156692860-156692960 1.9e-06 53_[+3]_19 chr20:18447875-18447975 1.9e-06 23_[+3]_49 chr1:22378932-22379032 1.9e-06 39_[-3]_33 chr17:27045033-27045133 2.3e-06 [-3]_72 chr7:1309662-1309762 2.8e-06 50_[+3]_22 chr15:52122229-52122329 3.4e-06 6_[-3]_66 chr16:16947118-16947218 3.8e-06 54_[-3]_18 chr19:1745295-1745395 3.8e-06 32_[+3]_40 chr19:42536812-42536912 4.1e-06 20_[-3]_52 chr2:70613174-70613274 4.9e-06 42_[-3]_30 chr1:15853358-15853458 7e-06 58_[+3]_14 chr2:177628941-177629041 1.1e-05 65_[+3]_7 chr7:157126189-157126289 1.3e-05 46_[+3]_26 chr20:30311262-30311362 1.7e-05 16_[-3]_56 chr17:8023567-8023667 1.9e-05 59_[-3]_13 chr4:111544384-111544484 2.9e-05 [-3]_72 chr1:207108913-207109013 2.9e-05 6_[-3]_66 chr2:26136569-26136669 4.2e-05 40_[-3]_32 chr15:70390021-70390121 4.2e-05 51_[-3]_21 chr8:33370494-33370594 7.7e-05 47_[+3]_25 chr13:103498096-10349819 0.00014 10_[+3]_62 chr8:126103983-126104083 0.00023 34_[-3]_38 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSGGGHBKVSRGGBSMGVGSSVGSSSSS MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SSGGGHBKVSRGGBSMGVGSSVGSSSSS width=28 seqs=53 chr16:2570163-2570263 ( 38) GCGGGCGGGCGGGCGGGCGGGCGCCGGG 1 chr2:237088288-237088388 ( 55) CCGGGACGGGAGGTGCGGGGCTGGCCCC 1 chr15:101835389-10183548 ( 2) CCTGGCGGCGGGGCGCGGGGCACGCTGG 1 chr20:2846317-2846417 ( 61) GAGGGTGGAGGGGGCACAGGGAGGGTGC 1 chr8:71520764-71520864 ( 29) GAGGGCAGGAGGGCACCCGGCCGCGGCC 1 chr21:45284115-45284215 ( 62) GCCGCTGGCCAGGTGCAAGGGAGGGGGG 1 chr4:113444214-113444314 ( 65) CCGGGTCTCCAGGCCGGGAGGGGGCGGC 1 chr22:28838257-28838357 ( 26) CGGGGCGGCGGGCCGAGAGGCCTCCTGC 1 chr11:615700-615800 ( 14) CGGGGAGGGAGGCGGAGGCGGAGGCGGG 1 chr16:68278907-68279007 ( 68) CCGGGTGGGCGACTGACAGCCCGGAGCC 1 chr15:41136421-41136521 ( 60) GGCGCGTGGGAGGGCCGGGCCCGTGCGC 1 chr3:185825402-185825502 ( 60) GCCCGCTGCGCGCCACAGGGGAGGGGCC 1 chr15:44719328-44719428 ( 1) TTGGGCAGAGCTGGGAGGGGGAGCGCGC 1 chr2:191184475-191184575 ( 18) CCCGGCGGCGCAGGACGGCGGTGGGCGG 1 chr6:169357077-169357177 ( 6) CTGGCCTGACAGCTCCCAGCCTGCCCGG 1 chr11:64480674-64480774 ( 63) CCGCGACGCGCGCCGCACGGCGCTGGCG 1 chr4:1044696-1044796 ( 31) GGAGCCTGAGCGGTGCCCGCGCCCGGCT 1 chr13:49550387-49550487 ( 4) CCCCGTCGAGGGGCGCGGACCACCCCCT 1 chr14:23292106-23292206 ( 2) TCGGGCAGCAAAGCCGCCGCCAGGAGGC 1 chr11:126175522-12617562 ( 6) CTGGGATTATAGGCATGAGCGACTGCGC 1 chr3:181444394-181444494 ( 10) GCAGCTCTGAAAGGCAGGGCCCGCGGCG 1 chr7:139044250-139044350 ( 69) GCGGGCAGCGCAGCCTTAGCCGCCAGCC 1 chr14:68066960-68067060 ( 9) TGAGGCTGCGCAGGCTTAGGGCGGGGCG 1 chr17:42430363-42430463 ( 71) GGGCCCTGGGGAGGGCAGGCAGGGCGGC 1 chr9:131171422-131171522 ( 19) CTGGGGCGAGATGTTGGGGGGAGGGGGT 1 chr7:70491830-70491930 ( 8) CGGGGATTACAGGTGTGAGCCTCCATGC 1 chr17:17494899-17494999 ( 12) GGGCGCGTGGCTGCAGCGGGGCCCGCGT 1 chr15:98964882-98964982 ( 22) GACCGCGGGAAGCCAGGAGGCGGGCGCG 1 chr10:99205963-99206063 ( 5) CCGGGGCGCCGAGTCGGAGGGGGTGGCA 1 chr5:133747530-133747630 ( 4) CCGGCAGGCGGTGGCGCAGTGCGCGTCG 1 chr11:73857698-73857798 ( 70) CTGGGATTACAGACGTGAGCCACCGCGC 1 chr5:156692860-156692960 ( 54) CCGGCGGTACAGCGGAGAGCGTGGAGAG 1 chr20:18447875-18447975 ( 24) CGGCGCCTGTAAGTGGGCCGGAGCAGGC 1 chr1:22378932-22379032 ( 40) CCCGCCTGTCGCGCACGCGCGGGCCGGC 1 chr17:27045033-27045133 ( 1) CCGGGTATAGAGGTGCAGGGGAGAGCAG 1 chr7:1309662-1309762 ( 51) CAGGCTGGGCGGCTCCCAGTCTGGGGCG 1 chr15:52122229-52122329 ( 7) TCCCGAACCCGGGCGCCCGGGCCGCGGG 1 chr16:16947118-16947218 ( 55) CTAGGATTGCAAGCGTGAGCCACCATGC 1 chr19:1745295-1745395 ( 33) CCGGCGCTATGACCCCTGGGGAGCCCCT 1 chr19:42536812-42536912 ( 21) CAGGGCAGCTGGCGAATGGCGAGGCCAG 1 chr2:70613174-70613274 ( 43) GTGAGCTGGTGGGGCAGCGCCCCCCTCC 1 chr1:15853358-15853458 ( 59) TGACGCGCGGAACCGCGGACGCGGCGGG 1 chr2:177628941-177629041 ( 66) GCACATTGGTGGGGGGTCGGGGGGGCGC 1 chr7:157126189-157126289 ( 47) TTGGGACTATAGGTGTGTGCCACCGCAC 1 chr20:30311262-30311362 ( 17) CAACGGGGCGGTGGCTCGGCGGGTACCC 1 chr17:8023567-8023667 ( 60) CGTGGCCGAGCGGTCTAAGGCGCTGGAT 1 chr4:111544384-111544484 ( 1) TGCGCACGGCGAGGCAGTAGCCCGGCCC 1 chr1:207108913-207109013 ( 7) GGTGGGTTAAGGCCCAGTACGAGGGCCG 1 chr2:26136569-26136669 ( 41) CCGGACGTGGTGGCACATGCGCCTGTGG 1 chr15:70390021-70390121 ( 52) GTGTGTGTGTGTGTGCGTGCGCGCGTGT 1 chr8:33370494-33370594 ( 48) GTACCTGCAACGGCTCGCGCCCGCCGGT 1 chr13:103498096-10349819 ( 11) CGTCGTATTAGACGGAAACCGAGCGGGC 1 chr8:126103983-126104083 ( 35) CGGGCTCTTGCGTCATCAGCCGTCGCCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSGGGHBKVSRGGBSMGVGSSVGSSSSS MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 28 n= 43800 bayes= 11.3306 E= 5.7e-008 -1237 129 52 -107 -129 90 34 -55 -88 -39 144 -187 -387 14 168 -387 -287 24 165 -1237 -42 90 -76 -17 -88 14 61 -7 -1237 -198 148 21 12 34 68 -229 -88 24 96 -88 29 -10 96 -387 -7 -356 144 -129 -387 24 165 -387 -1237 96 44 -7 -55 52 102 -287 -29 83 -24 -55 -88 2 124 -155 37 -10 61 -155 -155 -156 190 -1237 -1237 114 108 -287 -387 96 129 -1237 37 52 -10 -129 -1237 44 157 -287 -387 96 90 -107 -88 52 124 -1237 -1237 61 114 -71 -155 76 124 -1237 -387 102 76 -88 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSGGGHBKVSRGGBSMGVGSSVGSSSSS MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 28 nsites= 53 E= 5.7e-008 0.000000 0.547170 0.320755 0.132075 0.113208 0.415094 0.283019 0.188679 0.150943 0.169811 0.603774 0.075472 0.018868 0.245283 0.716981 0.018868 0.037736 0.264151 0.698113 0.000000 0.207547 0.415094 0.132075 0.245283 0.150943 0.245283 0.339623 0.264151 0.000000 0.056604 0.622642 0.320755 0.301887 0.283019 0.358491 0.056604 0.150943 0.264151 0.433962 0.150943 0.339623 0.207547 0.433962 0.018868 0.264151 0.018868 0.603774 0.113208 0.018868 0.264151 0.698113 0.018868 0.000000 0.433962 0.301887 0.264151 0.188679 0.320755 0.452830 0.037736 0.226415 0.396226 0.188679 0.188679 0.150943 0.226415 0.528302 0.094340 0.358491 0.207547 0.339623 0.094340 0.094340 0.075472 0.830189 0.000000 0.000000 0.490566 0.471698 0.037736 0.018868 0.433962 0.547170 0.000000 0.358491 0.320755 0.207547 0.113208 0.000000 0.301887 0.660377 0.037736 0.018868 0.433962 0.415094 0.132075 0.150943 0.320755 0.528302 0.000000 0.000000 0.339623 0.490566 0.169811 0.094340 0.377358 0.528302 0.000000 0.018868 0.452830 0.377358 0.150943 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSGGGHBKVSRGGBSMGVGSSVGSSSSS MEME-3 regular expression -------------------------------------------------------------------------------- [CG][CG]G[GC][GC][CTA][GTC][GT][GAC][GC][GAC][GA][GC][CGT][GC][CA][GC][AGC]G[CG][GC][ACG][GC][CG][GC][GC][GC][CG] -------------------------------------------------------------------------------- Time 828.57 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:85276896-85276996 9.05e-01 100 chr20:46382899-46382999 2.62e-01 100 chr6:86835252-86835352 1.33e-02 100 chr16:66765494-66765594 9.46e-01 100 chr2:77749452-77749552 2.82e-01 100 chr10:103954838-10395493 3.93e-01 100 chr12:67732366-67732466 4.54e-01 100 chrX:17620057-17620157 2.32e-02 12_[+1(3.26e-05)]_73 chr5:42583471-42583571 1.81e-01 100 chr17:48994815-48994915 2.27e-03 25_[-1(5.30e-06)]_60 chr1:71500132-71500232 7.88e-01 100 chr3:106932103-106932203 1.84e-02 41_[-2(1.71e-05)]_39 chr1:207108913-207109013 7.12e-02 6_[-3(2.92e-05)]_3_[+3(2.52e-05)]_\ 35 chr11:125495828-12549592 3.64e-01 100 chr9:118121926-118122026 2.25e-01 100 chr1:218065970-218066070 1.04e-03 43_[-2(6.35e-07)]_37 chr3:134172545-134172645 5.04e-01 100 chr13:36849557-36849657 1.53e-01 100 chr6:25380068-25380168 1.47e-05 66_[-2(1.53e-09)]_14 chr1:211550971-211551071 3.48e-04 50_[-1(9.73e-07)]_35 chr3:45035172-45035272 1.05e-04 38_[-1(8.98e-06)]_24_[-2(4.79e-06)]_\ 3 chr13:26052508-26052608 5.75e-01 100 chr10:117486141-11748624 5.53e-01 100 chr3:107103805-107103905 1.92e-01 69_[+2(9.05e-05)]_11 chr8:71520764-71520864 1.30e-04 28_[-3(1.81e-08)]_44 chr16:75899772-75899872 1.24e-02 56_[-2(1.02e-05)]_24 chr7:89561983-89562083 3.08e-01 100 chr3:156823095-156823195 1.26e-01 100 chr18:34479314-34479414 6.38e-01 100 chr8:112929244-112929344 2.14e-01 100 chr4:77197752-77197852 3.67e-01 100 chr13:67238534-67238634 3.55e-01 100 chr9:18144064-18144164 1.82e-04 65_[-2(1.62e-07)]_15 chr10:129934843-12993494 1.75e-01 100 chr11:77251415-77251515 2.93e-02 21_[+2(7.06e-06)]_59 chr7:70375877-70375977 4.09e-03 16_[-2(3.23e-05)]_42_[+2(1.17e-06)]_\ 2 chr1:183914602-183914702 3.84e-01 100 chr5:44172087-44172187 6.06e-01 100 chr15:65101056-65101156 7.80e-01 100 chr4:108811993-108812093 3.85e-03 55_[+2(4.03e-05)]_10_[-1(6.23e-05)] chr19:42536812-42536912 4.88e-04 20_[-3(4.11e-06)]_52 chr2:172137756-172137856 1.76e-01 100 chr16:13416239-13416339 6.78e-05 63_[-2(7.20e-07)]_17 chr19:8643670-8643770 9.43e-02 100 chr4:145964597-145964697 9.22e-01 100 chr4:93901992-93902092 2.27e-01 100 chr6:106698093-106698193 3.52e-01 100 chr6:3165736-3165836 6.64e-03 30_[+1(1.51e-06)]_55 chr16:2570163-2570263 1.57e-07 37_[+3(4.50e-12)]_35 chr9:95912708-95912808 2.05e-01 100 chr4:28077481-28077581 4.92e-01 100 chr1:215825333-215825433 1.49e-04 10_[+1(1.14e-07)]_75 chr7:41149072-41149172 7.43e-01 100 chr4:80886241-80886341 6.83e-01 100 chr17:755762-755862 7.11e-02 100 chr2:77750983-77751083 6.61e-02 100 chr21:26198099-26198199 3.81e-01 100 chr14:86520255-86520355 7.59e-01 100 chr8:90629768-90629868 4.67e-01 100 chr14:57530966-57531066 5.75e-01 100 chr22:45410575-45410675 3.63e-01 100 chr4:111558115-111558215 2.46e-01 100 chr2:98280735-98280835 2.02e-01 39_[+3(9.95e-05)]_33 chr2:196881183-196881283 9.99e-01 100 chr13:103498096-10349819 4.84e-02 100 chr1:152402480-152402580 8.88e-01 100 chr15:29291641-29291741 6.95e-01 100 chr4:99669731-99669831 2.25e-01 100 chr5:72989500-72989600 5.52e-03 55_[-2(1.48e-06)]_25 chr4:177772209-177772309 3.13e-03 12_[+2(9.21e-07)]_68 chr3:187148512-187148612 7.85e-01 100 chr17:73340896-73340996 1.47e-02 20_[-1(1.21e-05)]_65 chr2:202826373-202826473 1.59e-01 100 chr2:49587184-49587284 4.45e-01 100 chr4:141237210-141237310 6.59e-01 100 chr8:86933889-86933989 2.30e-01 100 chr12:88897112-88897212 4.17e-01 100 chr10:10236873-10236973 1.55e-01 100 chr11:41928116-41928216 6.62e-02 39_[-2(9.63e-05)]_41 chr2:98508183-98508283 6.39e-02 100 chr14:75307976-75308076 1.34e-01 100 chr9:122914867-122914967 3.21e-01 100 chr13:72434033-72434133 1.52e-01 100 chr6:169357077-169357177 2.41e-04 5_[-3(2.51e-07)]_67 chr16:74194688-74194788 3.05e-04 76_[+2(3.90e-08)]_4 chr3:13763761-13763861 6.88e-01 100 chr9:104150413-104150513 1.13e-03 6_[+2(1.22e-05)]_10_[-1(4.54e-05)]_\ 49 chr4:101983264-101983364 9.91e-01 100 chr8:126103983-126104083 2.64e-01 100 chr17:58167756-58167856 9.41e-01 100 chr14:105317959-10531805 5.02e-01 100 chr2:147433261-147433361 5.27e-04 8_[+2(1.40e-07)]_72 chr8:23207536-23207636 3.08e-01 100 chr16:55418962-55419062 8.95e-02 100 chr6:67117150-67117250 5.83e-01 100 chr16:13253716-13253816 2.69e-02 77_[+2(1.33e-05)]_3 chr8:75354460-75354560 1.08e-03 62_[-1(6.95e-07)]_23 chr3:157995955-157996055 1.16e-01 8_[-1(6.23e-05)]_77 chrX:129464667-129464767 1.12e-01 100 chr18:29526626-29526726 7.78e-02 100 chr12:9197525-9197625 2.06e-01 100 chr2:31922331-31922431 5.14e-01 100 chr9:15255513-15255613 1.56e-02 15_[+2(3.19e-06)]_65 chr4:12061083-12061183 3.20e-03 33_[+1(5.30e-06)]_52 chr2:85482921-85483021 2.55e-01 100 chr9:913959-914059 4.55e-03 38_[-1(2.11e-05)]_47 chr17:20865549-20865649 2.09e-04 28_[-1(1.45e-07)]_57 chrX:93330313-93330413 9.77e-01 100 chr4:11823645-11823745 1.50e-01 100 chr6:36563056-36563156 5.17e-01 100 chr4:140774521-140774621 8.48e-02 100 chr11:36509560-36509660 5.93e-01 100 chr12:59003903-59004003 1.03e-01 100 chr1:32626034-32626134 4.86e-01 100 chr1:180881041-180881141 8.10e-01 100 chrY:14705865-14705965 9.06e-01 100 chr7:149388186-149388286 2.74e-04 9_[+2(1.12e-05)]_71 chr3:6463463-6463563 3.56e-05 54_[+1(9.12e-08)]_31 chr11:133727154-13372725 6.75e-03 14_[-1(2.75e-05)]_71 chr7:121759148-121759248 4.19e-01 100 chr15:49664667-49664767 1.58e-01 100 chr5:104009312-104009412 5.52e-01 100 chr17:17494899-17494999 8.03e-03 11_[-3(1.17e-06)]_16_[-3(6.75e-05)]_\ 17 chrX:919273-919373 3.49e-01 100 chr12:12436168-12436268 4.60e-02 100 chr14:51244618-51244718 8.66e-01 100 chr8:132981518-132981618 8.71e-01 100 chr5:12865779-12865879 1.53e-01 100 chr7:7951049-7951149 1.05e-01 33_[+1(3.86e-05)]_52 chr19:53640466-53640566 2.49e-01 100 chr14:71681636-71681736 5.41e-01 100 chr19:1745295-1745395 4.88e-04 32_[+3(3.75e-06)]_5_[+3(2.51e-07)]_\ 7 chr3:120332566-120332666 7.94e-01 100 chr2:24523051-24523151 4.99e-01 100 chr9:91536889-91536989 1.50e-01 100 chr4:91990773-91990873 7.18e-01 100 chr5:77372180-77372280 4.15e-01 100 chr10:12045211-12045311 8.89e-01 100 chr1:41205412-41205512 2.90e-01 100 chr2:162893575-162893675 3.44e-02 30_[+1(7.29e-06)]_55 chr2:134892058-134892158 9.09e-02 100 chr1:168228922-168229022 1.57e-04 16_[-2(2.87e-07)]_64 chr2:17319644-17319744 8.67e-03 40_[+1(2.30e-05)]_45 chr7:20976279-20976379 9.30e-01 100 chr1:86048214-86048314 9.62e-01 100 chr4:78592281-78592381 6.50e-03 36_[+1(2.97e-06)]_49 chr1:35859124-35859224 9.42e-03 85_[-1(1.73e-06)] chr1:91994194-91994294 7.48e-01 100 chr20:30932777-30932877 1.74e-01 100 chr15:70390021-70390121 3.28e-02 55_[-3(3.14e-05)]_17 chr5:140793956-140794056 4.82e-01 100 chr15:44719328-44719428 4.19e-05 [-3(6.35e-08)]_72 chr4:24587986-24588086 5.54e-01 100 chr3:46627484-46627584 8.88e-01 100 chr1:62672956-62673056 8.83e-01 100 chr11:38604668-38604768 2.61e-01 100 chr1:36272127-36272227 9.30e-01 100 chr17:27296636-27296736 2.55e-03 11_[-3(7.21e-05)]_61 chr8:89603173-89603273 3.41e-01 100 chr2:26136569-26136669 6.08e-02 40_[-3(4.18e-05)]_32 chr15:52122229-52122329 1.38e-02 6_[-3(3.42e-06)]_3_[-3(9.79e-06)]_\ 35 chr4:113444214-113444314 1.09e-04 72_[+3(9.89e-09)] chr11:92891275-92891375 3.38e-02 100 chr12:43403848-43403948 2.10e-01 100 chr3:33414498-33414598 3.51e-01 100 chr2:231734612-231734712 8.48e-02 57_[+3(9.34e-05)]_15 chr3:18915279-18915379 1.05e-02 [+2(1.58e-05)]_80 chr1:55606221-55606321 8.86e-03 3_[-2(9.63e-05)]_33_[+1(7.25e-05)]_\ 29 chr18:3409167-3409267 1.82e-04 44_[+2(7.55e-08)]_36 chr6:15939914-15940014 3.64e-01 100 chr17:27045033-27045133 2.24e-03 [-3(2.35e-06)]_72 chr6:18334316-18334416 7.66e-01 100 chr20:54964553-54964653 2.10e-01 100 chr5:140365792-140365892 7.09e-01 100 chr15:29287540-29287640 8.28e-02 72_[-1(3.00e-05)]_13 chr5:74119719-74119819 5.97e-01 100 chr1:76189190-76189290 6.43e-02 24_[+1(7.81e-05)]_61 chr5:35036931-35037031 8.03e-02 11_[-2(5.35e-05)]_69 chr17:42633890-42633990 1.26e-01 100 chr1:16178987-16179087 3.52e-01 100 chr3:140229227-140229327 3.94e-01 100 chrX:155002146-155002246 4.03e-01 100 chr11:132507287-13250738 3.46e-01 100 chr14:91108539-91108639 1.43e-02 67_[-1(2.97e-06)]_18 chrX:122143192-122143292 3.39e-01 100 chr7:137358335-137358435 3.24e-01 100 chr18:63490657-63490757 1.46e-01 100 chr6:14306636-14306736 6.07e-05 8_[-2(1.88e-07)]_2_[-2(1.45e-05)]_\ 50 chr17:13874436-13874536 2.20e-01 100 chr2:237088288-237088388 8.01e-06 54_[-3(3.59e-10)]_18 chr22:19147889-19147989 2.88e-01 100 chr13:61253502-61253602 2.24e-01 100 chr2:70613174-70613274 2.77e-03 42_[-3(4.92e-06)]_30 chr2:104426471-104426571 5.90e-01 100 chr8:14364526-14364626 2.01e-01 100 chr14:23292106-23292206 2.62e-03 1_[+3(4.46e-07)]_25_[+3(4.81e-05)]_\ 18 chr6:111874343-111874443 4.68e-02 100 chr17:42908227-42908327 1.02e-01 10_[-1(4.54e-05)]_75 chr14:57266102-57266202 1.35e-01 23_[-2(5.73e-05)]_57 chr16:68278907-68279007 4.42e-04 29_[+3(2.23e-07)]_10_[+3(3.69e-08)]_\ 5 chr6:119675013-119675113 2.46e-01 100 chr4:52728041-52728141 1.28e-01 100 chr3:175703769-175703869 1.23e-03 4_[+1(6.57e-06)]_43_[-2(9.63e-05)]_\ 18 chr5:1934892-1934992 1.21e-01 100 chr12:131378535-13137863 9.47e-01 100 chr20:37359647-37359747 2.64e-01 100 chr10:8097354-8097454 1.21e-01 100 chr16:16947118-16947218 1.97e-04 54_[-3(3.75e-06)]_18 chr1:203812687-203812787 9.22e-01 100 chr5:31576911-31577011 3.42e-01 100 chr8:9864034-9864134 5.62e-01 100 chr2:67469498-67469598 8.79e-01 100 chr8:77832925-77833025 7.04e-01 100 chr2:137142491-137142591 9.15e-01 100 chr6:168262368-168262468 4.94e-01 100 chr2:67514409-67514509 3.23e-01 100 chr2:58893545-58893645 2.08e-01 19_[-1(9.05e-05)]_66 chr8:56806146-56806246 5.37e-01 100 chr19:6555508-6555608 1.24e-01 100 chr6:160338552-160338652 7.70e-01 100 chr4:12148054-12148154 5.51e-03 29_[-1(2.62e-06)]_56 chr17:42619329-42619429 2.20e-02 43_[-3(2.92e-05)]_29 chr9:123698813-123698913 9.07e-03 100 chr7:93180429-93180529 7.45e-01 100 chr15:55133175-55133275 7.69e-08 21_[+2(2.53e-11)]_59 chr4:170891638-170891738 2.02e-01 100 chr10:47015514-47015614 1.85e-01 100 chr2:213727870-213727970 9.67e-02 100 chr11:109471796-10947189 6.57e-01 100 chr2:68890480-68890580 5.52e-01 100 chr11:56427279-56427379 1.23e-03 21_[-2(3.92e-06)]_59 chr7:30596496-30596596 6.26e-02 100 chr1:165848890-165848990 5.63e-01 100 chr7:137703969-137704069 4.26e-01 100 chr20:2846317-2846417 5.28e-05 60_[+3(1.34e-08)]_12 chr20:24452083-24452183 4.78e-01 100 chr3:149381846-149381946 5.75e-01 100 chr1:113228674-113228774 4.72e-02 100 chr3:34849870-34849970 1.39e-03 21_[-1(3.33e-06)]_64 chr4:34930138-34930238 5.26e-02 64_[+2(1.71e-05)]_16 chr18:21958695-21958795 5.07e-01 100 chr18:5162919-5163019 5.94e-01 100 chr1:53884790-53884890 5.17e-01 100 chr10:18424968-18425068 1.01e-02 72_[+1(1.73e-06)]_13 chr6:28456694-28456794 2.99e-01 100 chr10:36872083-36872183 2.92e-02 52_[+2(2.02e-05)]_28 chr9:72274460-72274560 6.64e-01 100 chr1:246567640-246567740 5.04e-01 100 chr6:47339183-47339283 1.30e-02 79_[+1(8.98e-06)]_6 chr15:63338429-63338529 3.95e-02 15_[-2(2.99e-05)]_65 chr17:12369929-12370029 2.79e-01 100 chr18:18730883-18730983 3.83e-01 100 chr20:49253885-49253985 3.15e-01 100 chr22:43011590-43011690 3.87e-02 67_[-3(2.01e-05)]_5 chr2:208640649-208640749 1.36e-02 100 chr12:77346259-77346359 2.22e-01 100 chr9:26504574-26504674 9.54e-01 100 chr8:33370494-33370594 1.48e-01 47_[+3(7.70e-05)]_25 chr17:2041635-2041735 3.52e-02 100 chr2:26504859-26504959 6.65e-01 100 chr6:28615859-28615959 3.91e-04 41_[+2(2.17e-07)]_39 chrX:101978453-101978553 9.90e-01 100 chr7:70491830-70491930 3.30e-03 7_[+3(1.17e-06)]_65 chr7:83839285-83839385 1.75e-02 28_[+2(7.75e-06)]_52 chr22:47498684-47498784 2.57e-02 68_[-1(8.09e-06)]_17 chr11:122376217-12237631 2.20e-01 100 chr9:111146463-111146563 1.93e-01 100 chr3:30590484-30590584 2.75e-01 100 chr4:96967680-96967780 5.83e-01 100 chr9:121850208-121850308 8.01e-04 60_[+1(5.30e-06)]_25 chr17:41445276-41445376 4.33e-01 100 chr2:139722552-139722652 7.35e-01 100 chr3:102804521-102804621 3.61e-01 100 chr12:23910580-23910680 7.24e-02 100 chr7:95773020-95773120 3.52e-01 100 chr10:16197975-16198075 1.19e-01 20_[-2(4.33e-05)]_60 chr10:59164120-59164220 1.80e-01 100 chr4:1044696-1044796 1.06e-03 30_[-3(2.82e-07)]_42 chr3:103237164-103237264 3.62e-01 100 chr16:77709748-77709848 2.03e-02 100 chr4:171737241-171737341 5.28e-02 100 chr5:160504746-160504846 7.82e-01 100 chr19:46080876-46080976 2.11e-02 21_[+1(3.00e-05)]_64 chr1:167304500-167304600 9.63e-01 100 chr20:11699913-11700013 2.00e-01 100 chr5:156755307-156755407 4.07e-01 100 chr12:32223757-32223857 1.44e-03 34_[-2(1.85e-06)]_46 chr15:39974496-39974596 2.14e-02 4_[+2(9.32e-06)]_76 chr10:125514730-12551483 1.70e-06 28_[+1(9.73e-07)]_35_[+2(3.29e-07)]_\ 2 chr18:50293333-50293433 1.08e-02 52_[-1(1.21e-05)]_33 chr11:55544965-55545065 4.06e-04 30_[-2(2.17e-07)]_50 chr4:669955-670055 7.66e-01 100 chr14:46256456-46256556 8.96e-02 100 chr8:20138387-20138487 2.46e-02 34_[-2(1.71e-05)]_46 chr11:113666493-11366659 8.56e-01 100 chr2:135699636-135699736 9.09e-01 100 chr20:15405503-15405603 6.04e-01 100 chr6:4019028-4019128 1.42e-01 100 chr6:153162468-153162568 1.48e-01 100 chr5:159624996-159625096 8.53e-02 100 chr7:29588614-29588714 4.33e-01 100 chr14:81781864-81781964 5.55e-01 100 chr2:148431319-148431419 2.95e-01 100 chr1:210547262-210547362 6.80e-02 19_[-1(4.92e-05)]_8_[-1(1.93e-05)]_\ 43 chr19:21625257-21625357 9.00e-01 100 chr14:104260216-10426031 1.29e-01 100 chr17:70759758-70759858 9.83e-01 100 chr13:49550387-49550487 2.12e-03 3_[+3(3.99e-07)]_19_[+3(7.70e-05)]_\ 22 chr2:50424392-50424492 1.14e-03 16_[+1(2.79e-07)]_4_[+1(8.41e-05)]_\ 50 chr12:70160112-70160212 3.85e-01 100 chr2:222333148-222333248 3.98e-01 100 chr10:16033641-16033741 4.15e-03 76_[-2(6.35e-07)]_4 chr7:86273474-86273574 5.04e-01 100 chr2:190082376-190082476 2.88e-01 100 chr4:4661677-4661777 5.85e-01 100 chr3:172819091-172819191 1.67e-01 100 chr15:52548609-52548709 2.99e-02 100 chr12:54793164-54793264 2.08e-01 100 chr14:80831855-80831955 4.83e-01 100 chr4:110308214-110308314 1.10e-03 39_[+1(2.79e-07)]_46 chr2:178013241-178013341 8.83e-02 18_[+1(3.55e-05)]_67 chr17:2135502-2135602 7.59e-01 100 chr15:65847616-65847716 2.61e-03 54_[+2(9.21e-07)]_26 chr3:181444394-181444494 1.68e-03 9_[-3(6.22e-07)]_2_[+3(2.92e-05)]_\ 33 chr8:111188913-111189013 9.33e-01 100 chr11:27727605-27727705 1.76e-01 100 chr13:52544564-52544664 1.28e-01 100 chr7:1309662-1309762 1.62e-02 50_[+3(2.84e-06)]_22 chr5:164677082-164677182 6.40e-01 100 chr4:152545773-152545873 2.28e-01 100 chr4:67955998-67956098 8.05e-01 100 chr3:48126749-48126849 8.42e-01 100 chr14:55604992-55605092 1.46e-03 5_[-3(2.71e-05)]_34_[-1(5.33e-05)]_\ 18 chr1:203608970-203609070 3.59e-01 100 chr6:139100866-139100966 7.08e-03 42_[+2(1.12e-05)]_38 chr12:115482166-11548226 9.35e-01 100 chr10:115618401-11561850 8.91e-01 100 chr6:76000513-76000613 4.52e-01 100 chr15:92308045-92308145 3.24e-01 100 chr4:17763555-17763655 2.11e-04 34_[-2(2.30e-08)]_46 chr22:35772921-35773021 2.03e-01 100 chr20:12663319-12663419 2.60e-04 70_[-1(4.12e-07)]_15 chr2:42388623-42388723 5.12e-04 13_[-2(1.40e-07)]_67 chr2:154147162-154147262 8.54e-01 100 chr16:53237300-53237400 4.30e-03 71_[-2(2.87e-06)]_9 chr5:62917522-62917622 5.40e-01 100 chr9:113502970-113503070 4.94e-01 100 chr12:10358221-10358321 3.54e-03 78_[+1(9.73e-07)]_7 chr15:60688509-60688609 1.16e-02 72_[+2(8.51e-06)]_8 chr3:64152474-64152574 5.56e-01 100 chr6:64089152-64089252 1.98e-01 100 chr10:4272188-4272288 2.15e-01 100 chr15:98964882-98964982 2.44e-03 21_[+3(1.30e-06)]_51 chr10:29050657-29050757 8.61e-01 100 chr6:144555621-144555721 5.19e-01 100 chr18:73439537-73439637 6.80e-02 67_[-2(3.23e-05)]_13 chr5:170044582-170044682 1.29e-03 37_[+1(2.26e-07)]_48 chr1:181592161-181592261 8.86e-01 100 chr9:15211522-15211622 9.20e-01 100 chr5:106888851-106888951 1.54e-01 69_[-3(7.21e-05)]_3 chr17:66728392-66728492 6.04e-03 83_[+1(9.73e-05)]_2 chr6:46450870-46450970 8.41e-01 100 chr5:14672931-14673031 5.83e-01 100 chr9:23799752-23799852 2.29e-01 100 chr15:74823919-74824019 4.80e-01 100 chr1:88434409-88434509 7.31e-03 36_[-1(1.46e-05)]_49 chr9:81975925-81976025 6.52e-02 100 chr7:41975455-41975555 1.67e-01 100 chr4:139180163-139180263 8.91e-01 100 chr7:14596678-14596778 7.96e-02 22_[+1(3.26e-05)]_63 chr5:51029010-51029110 3.06e-01 100 chr11:615700-615800 1.07e-04 13_[-3(3.69e-08)]_59 chr1:165826257-165826357 2.33e-04 69_[+1(6.57e-06)]_16 chr11:15980061-15980161 1.55e-02 72_[-2(4.79e-06)]_8 chr18:20532024-20532124 5.06e-03 61_[-1(3.00e-05)]_24 chr4:160083367-160083467 7.92e-01 100 chr11:81809286-81809386 5.90e-01 100 chr4:181561461-181561561 3.59e-05 11_[+2(4.31e-07)]_24_[+1(2.30e-05)]_\ 30 chr1:178859907-178860007 1.73e-03 56_[+2(4.33e-06)]_24 chr12:28417947-28418047 5.39e-01 100 chr18:26269926-26270026 5.41e-02 100 chr1:204777266-204777366 6.85e-02 59_[+2(7.01e-05)]_21 chr4:135545616-135545716 4.42e-01 100 chr11:73857698-73857798 2.78e-05 40_[+1(5.30e-06)]_14_[-3(1.59e-06)]_\ 3 chr6:68901182-68901282 5.22e-01 100 chr1:92119757-92119857 1.14e-01 100 chr7:108767183-108767283 4.14e-04 49_[+2(5.59e-07)]_31 chr14:21538807-21538907 9.20e-02 100 chr17:46796930-46797030 1.14e-01 72_[+2(7.98e-05)]_8 chr10:35882708-35882808 3.07e-01 100 chr1:22378932-22379032 3.97e-03 39_[-3(1.93e-06)]_33 chr19:49907034-49907134 6.99e-02 100 chr11:128741063-12874116 2.18e-03 14_[-1(4.73e-06)]_71 chr9:26742897-26742997 1.26e-04 82_[+1(8.17e-09)]_3 chr12:14204991-14205091 7.58e-01 100 chr13:58680515-58680615 4.67e-02 100 chr9:131171422-131171522 1.64e-03 18_[+3(1.17e-06)]_54 chr3:54887170-54887270 5.42e-01 100 chr17:15074590-15074690 6.67e-02 100 chr17:57184419-57184519 5.53e-01 100 chr22:42834496-42834596 7.32e-01 100 chr8:4752045-4752145 5.90e-01 100 chr5:74884634-74884734 1.21e-01 62_[-1(4.92e-05)]_23 chr5:133747530-133747630 5.69e-03 7_[-3(7.71e-07)]_65 chr22:28838257-28838357 4.62e-04 25_[-3(3.69e-08)]_47 chr4:123230888-123230988 5.67e-01 100 chr7:10122685-10122785 9.75e-01 100 chr1:59032065-59032165 4.35e-01 100 chr3:167670835-167670935 1.97e-02 52_[-1(3.74e-06)]_33 chr7:83310705-83310805 1.89e-02 45_[+2(1.86e-05)]_35 chr10:44250129-44250229 1.42e-03 39_[-1(1.33e-05)]_18_[-2(6.13e-05)]_\ 8 chr4:53437529-53437629 8.90e-01 100 chr1:25845984-25846084 3.67e-03 37_[+1(1.73e-06)]_48 chr1:100645404-100645504 3.95e-01 100 chr1:120125520-120125620 1.96e-02 85_[+1(6.23e-05)] chr2:171050015-171050115 5.65e-02 79_[-2(2.02e-05)]_1 chr1:205456585-205456685 2.02e-03 84_[+1(4.92e-05)]_1 chr2:6086420-6086520 2.25e-01 100 chr12:12423935-12424035 7.69e-01 100 chr2:2616961-2617061 4.07e-02 13_[-2(6.56e-05)]_67 chr5:76116105-76116205 2.08e-02 38_[+2(2.57e-05)]_42 chr9:5615111-5615211 4.24e-02 100 chr17:8023567-8023667 2.95e-02 59_[-3(1.86e-05)]_13 chr4:111544384-111544484 4.97e-02 [-3(2.92e-05)]_32_[-3(7.21e-05)]_12 chr9:123115969-123116069 1.88e-02 72_[+2(4.79e-06)]_8 chr20:18447875-18447975 2.94e-03 23_[+3(1.93e-06)]_49 chr1:109618649-109618749 1.08e-01 100 chr1:93430485-93430585 6.76e-01 100 chr12:117003867-11700396 4.08e-01 100 chr15:98795444-98795544 8.88e-02 64_[-2(5.35e-05)]_16 chr11:91085376-91085476 7.48e-01 100 chr20:30311262-30311362 2.54e-02 36_[+3(1.06e-05)]_36 chr7:127660328-127660428 2.38e-01 100 chr7:157126189-157126289 1.54e-02 46_[+3(1.25e-05)]_26 chr20:2490506-2490606 1.62e-02 83_[-1(1.76e-05)]_2 chr13:30434315-30434415 7.08e-01 100 chr14:68487667-68487767 1.78e-01 100 chr21:41464251-41464351 5.96e-01 100 chr15:101835389-10183548 2.40e-05 1_[-3(1.34e-09)]_22_[-3(9.79e-06)]_\ 21 chrX:150573881-150573981 1.16e-01 31_[-1(6.73e-05)]_54 chr19:17156482-17156582 8.63e-01 100 chr4:28682204-28682304 5.51e-01 100 chr3:68681399-68681499 3.14e-01 100 chr5:141191116-141191216 1.56e-01 12_[-3(7.21e-05)]_60 chr18:65280002-65280102 2.14e-02 45_[+2(1.22e-05)]_35 chrX:2436119-2436219 1.08e-02 76_[-2(1.22e-05)]_4 chr2:58480468-58480568 2.11e-01 100 chr1:6930150-6930250 6.66e-01 100 chr5:64726046-64726146 4.21e-01 100 chr20:55807196-55807296 3.09e-02 100 chr2:98386983-98387083 2.53e-04 24_[-1(5.86e-07)]_61 chr3:80312514-80312614 5.36e-01 100 chr12:57233834-57233934 8.62e-01 100 chr12:32712012-32712112 7.99e-01 100 chr10:65389313-65389413 8.62e-01 100 chr4:122200779-122200879 4.32e-03 6_[+2(2.87e-06)]_74 chr5:15796781-15796881 9.63e-01 100 chr20:61200068-61200168 4.24e-01 100 chr2:191184475-191184575 1.46e-03 17_[-3(1.55e-07)]_55 chr10:115928464-11592856 3.70e-01 100 chr6:123377869-123377969 7.64e-01 100 chr2:208323917-208324017 3.98e-01 100 chr11:110245874-11024597 2.84e-01 100 chrX:15598161-15598261 2.68e-01 100 chr5:66171162-66171262 8.12e-01 100 chr19:57983525-57983625 1.85e-01 100 chr1:15853358-15853458 3.14e-02 58_[+3(6.98e-06)]_14 chr10:49713504-49713604 9.14e-05 34_[+1(2.62e-06)]_51 chr13:30628226-30628326 1.27e-01 100 chr2:147784271-147784371 7.01e-01 100 chr7:139044250-139044350 2.10e-03 68_[+3(6.93e-07)]_4 chr12:19387131-19387231 2.32e-01 100 chr12:31740007-31740107 9.98e-02 1_[-2(6.56e-05)]_79 chr1:71151065-71151165 9.93e-01 100 chr5:80898869-80898969 2.16e-02 9_[-1(4.21e-06)]_76 chr18:48801166-48801266 6.72e-01 100 chr17:49799293-49799393 9.86e-01 100 chr11:126175522-12617562 7.32e-08 5_[+3(6.22e-07)]_5_[-2(1.92e-08)]_9_\ [-2(1.20e-07)]_13 chr9:103605338-103605438 1.95e-01 100 chr12:57852819-57852919 6.76e-02 100 chr8:50711242-50711342 1.04e-02 74_[+2(1.12e-05)]_6 chr3:187236102-187236202 5.50e-02 100 chr16:72493719-72493819 8.22e-01 100 chr11:84898008-84898108 5.79e-02 22_[+1(3.00e-05)]_4_[+1(2.30e-05)]_\ 44 chr2:177628941-177629041 3.35e-05 15_[+1(1.33e-05)]_35_[+3(1.06e-05)]_\ 7 chr9:37446731-37446831 9.02e-01 100 chr20:40359569-40359669 3.15e-03 39_[+2(8.51e-06)]_41 chr12:101065552-10106565 7.40e-01 100 chr2:224508015-224508115 1.97e-01 100 chr7:66857686-66857786 4.77e-01 100 chr4:110037929-110038029 2.35e-01 100 chr1:160345784-160345884 1.24e-02 3_[-1(2.52e-05)]_82 chr15:41136421-41136521 4.87e-04 59_[+3(5.55e-08)]_13 chr7:33422840-33422940 8.61e-01 100 chr6:141771934-141772034 1.87e-05 13_[+2(7.98e-05)]_40_[+1(6.95e-07)]_\ 12 chr3:185825402-185825502 5.11e-04 3_[-3(2.34e-05)]_28_[-3(6.35e-08)]_\ 13 chr11:97178824-97178924 3.52e-01 100 chr3:193147066-193147166 7.55e-04 4_[-1(1.76e-05)]_58_[+2(2.19e-05)]_\ 3 chr7:115445915-115446015 9.15e-02 100 chr7:36852053-36852153 7.01e-01 100 chr8:142231208-142231308 1.84e-03 26_[+2(1.04e-06)]_54 chr7:85435556-85435656 5.82e-01 100 chr15:39444194-39444294 7.76e-01 100 chr3:32877562-32877662 3.62e-02 36_[-1(2.75e-05)]_49 chr14:31388017-31388117 1.41e-01 62_[-1(7.25e-05)]_23 chr1:8919547-8919647 8.72e-02 100 chr10:99205963-99206063 9.30e-04 [+3(1.37e-07)]_39_[+3(8.76e-05)]_5 chr14:23282252-23282352 2.21e-03 24_[+1(1.21e-05)]_61 chr6:13814975-13815075 8.64e-01 100 chr5:4199053-4199153 1.42e-01 100 chr3:10385868-10385968 1.33e-01 100 chr2:236305184-236305284 4.33e-01 100 chr17:52449497-52449597 7.38e-02 77_[+1(4.19e-05)]_8 chr15:40085262-40085362 6.32e-01 100 chr6:26235044-26235144 2.79e-01 100 chr20:39070946-39071046 8.38e-01 100 chr6:50791896-50791996 1.87e-01 100 chr13:95467599-95467699 2.03e-01 100 chr5:5829860-5829960 1.79e-02 39_[-1(4.73e-06)]_46 chr5:64560380-64560480 3.99e-03 20_[-1(2.28e-06)]_65 chr15:52403459-52403559 6.41e-04 47_[+2(1.04e-06)]_33 chr9:103910699-103910799 6.57e-01 100 chr11:64480674-64480774 2.54e-03 41_[-3(2.82e-07)]_31 chr5:156692860-156692960 8.12e-03 53_[+3(1.93e-06)]_19 chr2:112470192-112470292 2.17e-01 100 chr5:124106558-124106658 7.83e-03 15_[-1(5.30e-06)]_70 chr2:10273412-10273512 2.23e-04 53_[-1(1.85e-07)]_32 chr13:31163401-31163501 1.69e-01 100 chr5:126432432-126432532 2.74e-02 42_[-2(1.58e-05)]_38 chr11:14081031-14081131 6.84e-06 6_[+2(3.28e-08)]_74 chr2:114582722-114582822 1.13e-01 100 chr5:77703710-77703810 2.33e-02 52_[-2(3.75e-05)]_28 chr11:11227500-11227600 3.34e-01 100 chr11:133399795-13339989 1.73e-02 36_[+1(1.21e-05)]_49 chr14:68066960-68067060 6.81e-03 8_[-3(9.52e-07)]_64 chr18:66343045-66343145 1.45e-01 100 chr1:82430824-82430924 9.77e-01 100 chr11:111427752-11142785 2.75e-02 61_[+2(6.13e-05)]_19 chr2:208907783-208907883 3.13e-01 100 chr1:220554472-220554572 8.50e-01 100 chr5:101855648-101855748 5.87e-01 100 chr19:40360811-40360911 8.56e-01 100 chr7:157754937-157755037 3.43e-01 100 chr5:51749130-51749230 2.77e-02 58_[+1(2.52e-05)]_27 chr21:45284115-45284215 1.46e-04 14_[+3(1.25e-05)]_19_[+3(2.09e-08)]_\ 11 chr13:78178036-78178136 7.36e-01 100 chr5:32360083-32360183 8.05e-01 100 chr2:143213520-143213620 7.40e-01 100 chr2:189310180-189310280 7.57e-03 40_[-2(1.22e-05)]_40 chr6:107196518-107196618 3.46e-02 33_[-1(3.86e-05)]_52 chr5:123916729-123916829 3.91e-01 100 chr12:80178222-80178322 9.80e-03 23_[+1(3.26e-05)]_62 chr10:127429121-12742922 2.35e-01 100 chr2:14979789-14979889 9.67e-02 100 chr17:9182944-9183044 2.39e-02 79_[-2(5.29e-06)]_1 chr4:81148613-81148713 7.52e-01 100 chr7:42261886-42261986 1.54e-02 30_[+2(3.53e-06)]_50 chr5:153866206-153866306 5.52e-02 100 chr9:11038277-11038377 3.17e-06 45_[+2(5.14e-10)]_35 chr12:6793893-6793993 6.49e-02 100 chrX:39676198-39676298 8.02e-03 12_[+1(1.10e-05)]_73 chr1:29513267-29513367 9.12e-01 100 chr22:37644762-37644862 2.52e-01 100 chr8:28352637-28352737 8.18e-03 14_[-2(1.45e-05)]_66 chr5:148331273-148331373 1.03e-05 53_[+1(9.64e-09)]_32 chr10:22906181-22906281 5.10e-01 100 chr20:2719355-2719455 1.41e-01 100 chr9:22723388-22723488 2.30e-01 100 chr14:23451939-23452039 1.06e-01 100 chr14:59824819-59824919 7.09e-02 100 chr2:181848479-181848579 9.68e-02 33_[+2(7.98e-05)]_47 chr2:122444532-122444632 2.32e-01 100 chr4:95692255-95692355 1.94e-01 100 chr17:67297225-67297325 8.67e-02 55_[+1(5.33e-05)]_30 chr10:99408455-99408555 6.14e-04 18_[-1(1.46e-05)]_67 chr2:232235412-232235512 3.80e-04 77_[+2(2.17e-07)]_3 chr17:39831949-39832049 3.17e-04 61_[+1(3.46e-07)]_24 chr14:25271861-25271961 4.26e-02 100 chr14:65207032-65207132 5.21e-02 100 chr12:106935098-10693519 3.37e-02 60_[-1(2.11e-05)]_25 chr17:42430363-42430463 4.87e-05 71_[-3(6.22e-07)]_1 chr11:113644710-11364481 6.14e-01 100 chr14:65844258-65844358 3.22e-01 100 chr6:128602353-128602453 9.19e-01 100 chr3:127961692-127961792 9.15e-01 100 chr13:22780675-22780775 6.66e-01 100 chr10:14686423-14686523 1.21e-02 24_[+2(1.86e-05)]_56 chr1:24613238-24613338 3.10e-02 72_[-2(5.73e-05)]_8 chr5:54701916-54702016 6.36e-01 100 chr5:3734941-3735041 4.40e-01 100 chr2:200331962-200332062 1.54e-01 100 chr20:36965840-36965940 2.64e-04 [-1(6.73e-05)]_19_[-2(1.66e-06)]_46 chr6:66345827-66345927 4.49e-01 100 chr17:52517561-52517661 5.67e-01 100 chr6:74108259-74108359 2.40e-03 38_[+1(2.26e-07)]_47 chr18:9443007-9443107 9.77e-01 100 chr12:63068452-63068552 3.25e-01 100 chr1:222216454-222216554 1.12e-01 100 chr1:24528747-24528847 5.36e-01 100 chr3:86779547-86779647 2.18e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: surya.stanford.edu ********************************************************************************