# DREME 4.12.0 # command: dreme -v 1 -oc seqnotcut_memechip_out/dreme_out -png -dna -p seqnotcut_memechip_out/seqs-centered -n seqnotcut_memechip_out/seqs-shuffled # positives: 32658 from seqnotcut_memechip_out/seqs-centered (Mon Oct 21 19:00:17 PDT 2019) # negatives: 32658 from seqnotcut_memechip_out/seqs-shuffled (Mon Oct 21 19:00:17 PDT 2019) # host: surya.stanford.edu # when: Mon Oct 21 19:14:11 PDT 2019 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.274 C 0.226 G 0.226 T 0.275 MOTIF ATGYADAT DREME-1 # Word RC Word Pos Neg P-value E-value # BEST ATGYADAT ATHTRCAT 2937 741 5.2e-324 2.4e-319 # ATGCAAAT ATTTGCAT 1162 203 6.4e-167 2.9e-162 # ATGCAGAT ATCTGCAT 544 112 6.7e-070 3.1e-065 # ATGTAAAT ATTTACAT 619 153 3.0e-068 1.4e-063 # ATGCATAT ATATGCAT 332 110 2.0e-027 9.1e-023 # ATGTAGAT ATCTACAT 220 84 1.4e-015 6.6e-011 # ATGTATAT ATATACAT 198 95 8.0e-010 3.7e-005 letter-probability matrix: alength= 4 w= 8 nsites= 3125 E= 2.4e-319 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.663040 0.000000 0.336960 1.000000 0.000000 0.000000 0.000000 0.580800 0.000000 0.244800 0.174400 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 MOTIF MATRACAA DREME-2 # Word RC Word Pos Neg P-value E-value # BEST MATRACAA TTGTYATK 2099 746 3.3e-154 1.5e-149 # CATAACAA TTGTTATG 670 144 4.7e-083 2.1e-078 # CATGACAA TTGTCATG 598 189 4.2e-051 1.9e-046 # AATAACAA TTGTTATT 493 216 2.3e-026 1.1e-021 # AATGACAA TTGTCATT 376 204 3.4e-013 1.5e-008 letter-probability matrix: alength= 4 w= 8 nsites= 2155 E= 1.5e-149 0.407425 0.592575 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.544780 0.000000 0.455220 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CTGKGD DREME-3 # Word RC Word Pos Neg P-value E-value # BEST CTGKGD HCMCAG 14015 10841 8.1e-145 3.7e-140 # CTGGGA TCCCAG 3476 2281 1.0e-061 4.7e-057 # CTGTGT ACACAG 2752 1884 2.3e-040 1.1e-035 # CTGTGA TCACAG 2775 1953 9.4e-036 4.3e-031 # CTGTGG CCACAG 2807 2132 8.5e-024 3.9e-019 # CTGGGT ACCCAG 2334 1823 1.4e-016 6.2e-012 # CTGGGG CCCCAG 3259 2712 6.0e-014 2.7e-009 letter-probability matrix: alength= 4 w= 6 nsites= 18360 E= 3.7e-140 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.526307 0.473693 0.000000 0.000000 1.000000 0.000000 0.359259 0.000000 0.352233 0.288508 MOTIF DAAATR DREME-4 # Word RC Word Pos Neg P-value E-value # BEST DAAATR YATTTH 14226 11216 2.5e-129 1.1e-124 # AAAATA TATTTT 4091 2879 1.1e-053 4.8e-049 # TAAATA TATTTA 2659 1800 5.9e-041 2.7e-036 # GAAATG CATTTC 2978 2099 3.7e-038 1.7e-033 # TAAATG CATTTA 2651 1981 8.5e-025 3.8e-020 # GAAATA TATTTC 2352 1790 9.4e-020 4.2e-015 # AAAATG CATTTT 3998 3317 1.6e-017 7.0e-013 letter-probability matrix: alength= 4 w= 6 nsites= 19628 E= 1.1e-124 0.442939 0.000000 0.281129 0.275932 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.486703 0.000000 0.513297 0.000000 MOTIF RGARA DREME-5 # Word RC Word Pos Neg P-value E-value # BEST RGARA TYTCY 23129 20753 1.3e-087 5.8e-083 # AGAAA TTTCT 10891 9048 1.4e-055 6.4e-051 # AGAGA TCTCT 9352 7965 5.0e-035 2.2e-030 # GGAAA TTTCC 8270 6960 4.2e-034 1.9e-029 # GGAGA TCTCC 7998 6944 5.0e-023 2.2e-018 letter-probability matrix: alength= 4 w= 5 nsites= 40340 E= 5.8e-083 0.557561 0.000000 0.442439 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.540332 0.000000 0.459668 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF TATGCWAA DREME-6 # Word RC Word Pos Neg P-value E-value # BEST TATGCWAA TTWGCATA 612 184 2.2e-055 9.7e-051 # TATGCTAA TTAGCATA 300 84 4.9e-030 2.1e-025 # TATGCAAA TTTGCATA 317 100 7.9e-028 3.4e-023 letter-probability matrix: alength= 4 w= 8 nsites= 623 E= 9.7e-051 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.518459 0.000000 0.000000 0.481541 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CTSCWG DREME-7 # Word RC Word Pos Neg P-value E-value # BEST CTSCWG CWGSAG 7990 6350 1.6e-054 6.8e-050 # CTGCAG CTGCAG 1806 1226 1.7e-027 7.4e-023 # CTGCTG CAGCAG 3155 2407 5.0e-026 2.1e-021 # CTCCTG CAGGAG 2159 1744 4.0e-012 1.7e-007 # CTCCAG CTGGAG 2195 1798 4.8e-011 2.1e-006 letter-probability matrix: alength= 4 w= 6 nsites= 9521 E= 6.8e-050 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.464342 0.535658 0.000000 0.000000 1.000000 0.000000 0.000000 0.427791 0.000000 0.000000 0.572209 0.000000 0.000000 1.000000 0.000000 MOTIF ATGCGCAT DREME-8 # Word RC Word Pos Neg P-value E-value # BEST ATGCGCAT ATGCGCAT 210 7 1.5e-053 6.2e-049 # ATGCGCAT ATGCGCAT 210 7 1.5e-053 6.2e-049 letter-probability matrix: alength= 4 w= 8 nsites= 211 E= 6.2e-049 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 MOTIF CCRCCNC DREME-9 # Word RC Word Pos Neg P-value E-value # BEST CCRCCNC GNGGYGG 2851 1929 4.4e-044 1.9e-039 # CCACCAC GTGGTGG 550 314 2.8e-016 1.2e-011 # CCGCCCC GGGGCGG 490 275 2.4e-015 1.0e-010 # CCGCCGC GCGGCGG 339 199 7.2e-010 3.1e-005 # CCACCCC GGGGTGG 672 488 2.8e-008 1.2e-003 # CCGCCTC GAGGCGG 330 205 3.2e-008 1.4e-003 # CCACCTC GAGGTGG 561 417 2.0e-006 8.4e-002 # CCACCGC GCGGTGG 219 138 1.0e-005 4.3e-001 # CCGCCAC GTGGCGG 174 114 2.4e-004 1.0e+001 letter-probability matrix: alength= 4 w= 7 nsites= 3261 E= 1.9e-039 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.595523 0.000000 0.404477 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.207912 0.357559 0.164060 0.270469 0.000000 1.000000 0.000000 0.000000 MOTIF ACACAYAC DREME-10 # Word RC Word Pos Neg P-value E-value # BEST ACACAYAC GTRTGTGT 496 183 7.2e-035 3.1e-030 # ACACACAC GTGTGTGT 369 130 5.0e-028 2.1e-023 # ACACATAC GTATGTGT 159 58 2.1e-012 9.1e-008 letter-probability matrix: alength= 4 w= 8 nsites= 802 E= 3.1e-030 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.810474 0.000000 0.189526 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF ATGHTAAT DREME-11 # Word RC Word Pos Neg P-value E-value # BEST ATGHTAAT ATTADCAT 676 308 4.2e-033 1.8e-028 # ATGTTAAT ATTAACAT 293 123 1.7e-017 7.2e-013 # ATGCTAAT ATTAGCAT 202 93 9.2e-011 3.9e-006 # ATGATAAT ATTATCAT 188 93 7.0e-009 3.0e-004 letter-probability matrix: alength= 4 w= 8 nsites= 682 E= 1.8e-028 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.275660 0.294721 0.000000 0.429619 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 MOTIF CDGGAA DREME-12 # Word RC Word Pos Neg P-value E-value # BEST CDGGAA TTCCHG 4243 3278 1.3e-032 5.7e-028 # CAGGAA TTCCTG 2053 1490 1.1e-022 4.8e-018 # CTGGAA TTCCAG 1925 1546 2.1e-011 8.7e-007 # CGGGAA TTCCCG 477 362 3.6e-005 1.5e+000 letter-probability matrix: alength= 4 w= 6 nsites= 4567 E= 5.7e-028 0.000000 1.000000 0.000000 0.000000 0.459820 0.000000 0.106635 0.433545 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF ACGTGD DREME-13 # Word RC Word Pos Neg P-value E-value # BEST ACGTGD HCACGT 1083 625 9.1e-030 3.8e-025 # ACGTGG CCACGT 482 238 1.9e-020 7.9e-016 # ACGTGA TCACGT 387 221 6.7e-012 2.8e-007 # ACGTGT ACACGT 365 225 3.9e-009 1.6e-004 letter-probability matrix: alength= 4 w= 6 nsites= 1122 E= 3.8e-025 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.320856 0.000000 0.384135 0.295009 MOTIF AGRKGGCG DREME-14 # Word RC Word Pos Neg P-value E-value # BEST AGRKGGCG CGCCMYCT 399 144 3.2e-029 1.3e-024 # AGAGGGCG CGCCCTCT 128 38 6.3e-013 2.6e-008 # AGATGGCG CGCCATCT 75 23 6.5e-008 2.7e-003 # AGGGGGCG CGCCCCCT 143 68 1.3e-007 5.3e-003 # AGGTGGCG CGCCACCT 56 16 1.2e-006 4.9e-002 letter-probability matrix: alength= 4 w= 8 nsites= 402 E= 1.3e-024 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.504975 0.000000 0.495025 0.000000 0.000000 0.000000 0.674129 0.325871 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF AAAAMAAA DREME-15 # Word RC Word Pos Neg P-value E-value # BEST AAAAMAAA TTTKTTTT 1253 780 6.2e-027 2.6e-022 # AAAACAAA TTTGTTTT 604 359 8.4e-016 3.5e-011 # AAAAAAAA TTTTTTTT 707 449 9.5e-015 4.0e-010 letter-probability matrix: alength= 4 w= 8 nsites= 1458 E= 2.6e-022 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.569273 0.430727 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CYTCCC DREME-16 # Word RC Word Pos Neg P-value E-value # BEST CYTCCC GGGARG 4671 3756 6.5e-027 2.7e-022 # CCTCCC GGGAGG 2805 2131 9.6e-024 4.0e-019 # CTTCCC GGGAAG 2148 1810 1.6e-008 6.7e-004 letter-probability matrix: alength= 4 w= 6 nsites= 5221 E= 2.7e-022 0.000000 1.000000 0.000000 0.000000 0.000000 0.578625 0.000000 0.421375 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF ACARWG DREME-17 # Word RC Word Pos Neg P-value E-value # BEST ACARWG CWYTGT 7016 6005 2.2e-023 9.0e-019 # ACAAAG CTTTGT 2715 2227 2.8e-013 1.2e-008 # ACAGAG CTCTGT 1387 1134 1.5e-007 6.3e-003 # ACAATG CATTGT 2049 1815 5.5e-005 2.3e+000 # ACAGTG CACTGT 1458 1283 3.4e-004 1.4e+001 letter-probability matrix: alength= 4 w= 6 nsites= 7894 E= 9.0e-019 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.630099 0.000000 0.369901 0.000000 0.541551 0.000000 0.000000 0.458449 0.000000 0.000000 1.000000 0.000000 MOTIF RAATR DREME-18 # Word RC Word Pos Neg P-value E-value # BEST RAATR YATTY 13173 12043 5.7e-020 2.3e-015 # GAATA TATTC 4771 4156 1.3e-012 5.4e-008 # GAATG CATTC 6008 5489 5.1e-008 2.1e-003 # AAATA TATTT 2313 1978 6.6e-008 2.7e-003 # AAATG CATTT 2834 2598 4.3e-004 1.8e+001 letter-probability matrix: alength= 4 w= 5 nsites= 17259 E= 2.3e-015 0.309925 0.000000 0.690075 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.440640 0.000000 0.559360 0.000000 MOTIF CRYCTGTA DREME-19 # Word RC Word Pos Neg P-value E-value # BEST CRYCTGTA TACAGRYG 335 151 1.7e-017 6.8e-013 # CGCCTGTA TACAGGCG 60 14 3.1e-008 1.2e-003 # CACCTGTA TACAGGTG 143 70 3.0e-007 1.2e-002 # CGTCTGTA TACAGACG 23 3 4.4e-005 1.8e+000 # CATCTGTA TACAGATG 110 64 3.0e-004 1.2e+001 letter-probability matrix: alength= 4 w= 8 nsites= 336 E= 6.8e-013 0.000000 1.000000 0.000000 0.000000 0.752976 0.000000 0.247024 0.000000 0.000000 0.604167 0.000000 0.395833 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CWGCCTS DREME-20 # Word RC Word Pos Neg P-value E-value # BEST CWGCCTS SAGGCWG 2348 1841 3.0e-016 1.2e-011 # CAGCCTG CAGGCTG 635 472 4.3e-007 1.8e-002 # CTGCCTG CAGGCAG 706 561 2.2e-005 8.7e-001 # CTGCCTC GAGGCAG 616 483 2.9e-005 1.2e+000 # CAGCCTC GAGGCTG 499 407 1.2e-003 4.7e+001 letter-probability matrix: alength= 4 w= 7 nsites= 2446 E= 1.2e-011 0.000000 1.000000 0.000000 0.000000 0.459526 0.000000 0.000000 0.540474 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.453802 0.546198 0.000000 MOTIF CCACCAKG DREME-21 # Word RC Word Pos Neg P-value E-value # BEST CCACCAKG CMTGGTGG 371 207 3.6e-012 1.4e-007 # CCACCATG CATGGTGG 175 94 4.3e-007 1.7e-002 # CCACCAGG CCTGGTGG 196 113 1.3e-006 5.2e-002 letter-probability matrix: alength= 4 w= 8 nsites= 373 E= 1.4e-007 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.528150 0.471850 0.000000 0.000000 1.000000 0.000000 MOTIF CCYGGS DREME-22 # Word RC Word Pos Neg P-value E-value # BEST CCYGGS SCCRGG 3699 3165 5.1e-012 2.1e-007 # CCCGGG CCCGGG 507 360 2.8e-007 1.1e-002 # CCTGGC GCCAGG 1993 1769 9.0e-005 3.6e+000 # CCCGGC GCCGGG 854 718 2.8e-004 1.1e+001 # CCTGGG CCCAGG 709 615 4.9e-003 2.0e+002 letter-probability matrix: alength= 4 w= 6 nsites= 4221 E= 2.1e-007 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.341151 0.000000 0.658849 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.706705 0.293295 0.000000 MOTIF ATAATAAW DREME-23 # Word RC Word Pos Neg P-value E-value # BEST ATAATAAW WTTATTAT 385 219 5.7e-012 2.3e-007 # ATAATAAT ATTATTAT 216 110 2.0e-009 8.2e-005 # ATAATAAA TTTATTAT 178 113 8.0e-005 3.2e+000 letter-probability matrix: alength= 4 w= 8 nsites= 393 E= 2.3e-007 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.445293 0.000000 0.000000 0.554707 MOTIF CHGYG DREME-24 # Word RC Word Pos Neg P-value E-value # BEST CHGYG CRCDG 10052 9207 2.2e-013 8.8e-009 # CAGTG CACTG 4752 4409 5.8e-005 2.3e+000 # CCGTG CACGG 1473 1306 6.4e-004 2.6e+001 # CAGCG CGCTG 1762 1592 1.4e-003 5.5e+001 # CTGTG CACAG 1567 1410 1.7e-003 6.8e+001 # CTGCG CGCAG 1886 1715 1.8e-003 7.1e+001 # CCGCG CGCGG 1123 992 2.0e-003 8.1e+001 letter-probability matrix: alength= 4 w= 5 nsites= 13370 E= 8.8e-009 0.000000 1.000000 0.000000 0.000000 0.517801 0.218474 0.000000 0.263725 0.000000 0.000000 1.000000 0.000000 0.000000 0.383321 0.000000 0.616679 0.000000 0.000000 1.000000 0.000000 MOTIF TTTAAAAR DREME-25 # Word RC Word Pos Neg P-value E-value # BEST TTTAAAAR YTTTTAAA 599 412 1.7e-009 6.5e-005 # TTTAAAAA TTTTTAAA 383 247 2.9e-008 1.1e-003 # TTTAAAAG CTTTTAAA 255 185 4.7e-004 1.8e+001 letter-probability matrix: alength= 4 w= 8 nsites= 607 E= 6.5e-005 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.612850 0.000000 0.387150 0.000000 MOTIF GCCTGTAR DREME-26 # Word RC Word Pos Neg P-value E-value # BEST GCCTGTAR YTACAGGC 206 110 3.4e-008 1.3e-003 # GCCTGTAA TTACAGGC 123 61 2.8e-006 1.1e-001 # GCCTGTAG CTACAGGC 83 49 1.9e-003 7.4e+001 letter-probability matrix: alength= 4 w= 8 nsites= 208 E= 1.3e-003 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.600962 0.000000 0.399038 0.000000 MOTIF TATGCABA DREME-27 # Word RC Word Pos Neg P-value E-value # BEST TATGCABA TVTGCATA 251 146 7.0e-008 2.7e-003 # TATGCACA TGTGCATA 103 57 1.7e-004 6.5e+000 # TATGCATA TATGCATA 43 18 9.3e-004 3.6e+001 # TATGCAGA TCTGCATA 106 71 5.1e-003 2.0e+002 letter-probability matrix: alength= 4 w= 8 nsites= 257 E= 2.7e-003 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.420233 0.412451 0.167315 1.000000 0.000000 0.000000 0.000000 MOTIF CTHCCTC DREME-28 # Word RC Word Pos Neg P-value E-value # BEST CTHCCTC GAGGDAG 1176 939 8.9e-008 3.4e-003 # CTCCCTC GAGGGAG 301 224 4.3e-004 1.6e+001 # CTTCCTC GAGGAAG 636 523 4.5e-004 1.7e+001 # CTACCTC GAGGTAG 254 201 7.2e-003 2.8e+002 letter-probability matrix: alength= 4 w= 7 nsites= 1208 E= 3.4e-003 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.211921 0.254967 0.000000 0.533113 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CAGAKGCC DREME-29 # Word RC Word Pos Neg P-value E-value # BEST CAGAKGCC GGCMTCTG 234 138 3.4e-007 1.3e-002 # CAGAGGCC GGCCTCTG 126 72 7.4e-005 2.8e+000 # CAGATGCC GGCATCTG 108 66 8.9e-004 3.4e+001 letter-probability matrix: alength= 4 w= 8 nsites= 234 E= 1.3e-002 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.538462 0.461538 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CCACTAGR DREME-30 # Word RC Word Pos Neg P-value E-value # BEST CCACTAGR YCTAGTGG 244 146 3.7e-007 1.4e-002 # CCACTAGA TCTAGTGG 132 68 3.4e-006 1.3e-001 # CCACTAGG CCTAGTGG 112 78 8.1e-003 3.1e+002 letter-probability matrix: alength= 4 w= 8 nsites= 245 E= 1.4e-002 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.538776 0.000000 0.461224 0.000000 MOTIF AYAAAAG DREME-31 # Word RC Word Pos Neg P-value E-value # BEST AYAAAAG CTTTTRT 1439 1198 9.0e-007 3.5e-002 # ATAAAAG CTTTTAT 598 472 5.7e-005 2.2e+000 # ACAAAAG CTTTTGT 850 740 2.8e-003 1.1e+002 letter-probability matrix: alength= 4 w= 7 nsites= 1466 E= 3.5e-002 1.000000 0.000000 0.000000 0.000000 0.000000 0.588677 0.000000 0.411323 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF CCACCTAC DREME-32 # Word RC Word Pos Neg P-value E-value # BEST CCACCTAC GTAGGTGG 103 45 1.0e-006 3.9e-002 # CCACCTAC GTAGGTGG 103 45 1.0e-006 3.9e-002 letter-probability matrix: alength= 4 w= 8 nsites= 103 E= 3.9e-002 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 4463.17 seconds