******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= cutnotseq_memechip_out/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr19:50490316-50490974 1.0000 100 chr3:10501657-10502450 1.0000 100 chr20:44669306-44670082 1.0000 100 chr19:39902844-39903644 1.0000 100 chr1:159147036-159147773 1.0000 100 chr11:66185490-66187691 1.0000 100 chr17:33030640-33031357 1.0000 100 chr8:10847647-10848192 1.0000 100 chr18:34849774-34850592 1.0000 100 chr4:8581990-8582926 1.0000 100 chr4:180016596-180017541 1.0000 100 chr19:18343565-18345057 1.0000 100 chr1:2457609-2458825 1.0000 100 chr2:219827401-219828324 1.0000 100 chr11:61334449-61335293 1.0000 100 chr20:37321040-37321557 1.0000 100 chr1:37486083-37486871 1.0000 100 chr20:44859168-44859945 1.0000 100 chr20:37314298-37314883 1.0000 100 chr5:151303906-151304733 1.0000 100 chr19:54406207-54406846 1.0000 100 chr10:124671081-12467179 1.0000 100 chr2:163697144-163697708 1.0000 100 chr3:38847013-38847664 1.0000 100 chr20:48099185-48099681 1.0000 100 chr5:101022152-101022870 1.0000 100 chr15:74583563-74584195 1.0000 100 chr4:180018762-180019489 1.0000 100 chr9:128844780-128845702 1.0000 100 chr8:142726050-142726657 1.0000 100 chr19:7627504-7628420 1.0000 100 chr20:37309008-37309746 1.0000 100 chr1:6112407-6113306 1.0000 100 chr5:141133144-141134207 1.0000 100 chr2:55360854-55361445 1.0000 100 chr20:44655909-44656505 1.0000 100 chr1:37720800-37721430 1.0000 100 chr12:11653361-11653881 1.0000 100 chr3:9593865-9594448 1.0000 100 chr7:30711476-30712032 1.0000 100 chr6:84568790-84569408 1.0000 100 chr7:154861581-154862290 1.0000 100 chr10:98841416-98841982 1.0000 100 chr6:69942784-69943403 1.0000 100 chr9:136324629-136325236 1.0000 100 chr5:161495485-161495885 1.0000 100 chr15:51973347-51973904 1.0000 100 chr9:138863784-138864405 1.0000 100 chr5:175223517-175224504 1.0000 100 chr17:72667320-72667986 1.0000 100 chr1:37389653-37390167 1.0000 100 chr7:32720266-32720892 1.0000 100 chr5:98345740-98346486 1.0000 100 chr11:71162495-71163178 1.0000 100 chr10:20546291-20546874 1.0000 100 chr12:108861869-10886244 1.0000 100 chr4:134514751-134515434 1.0000 100 chr12:113229180-11322983 1.0000 100 chr14:96401388-96402140 1.0000 100 chr11:113344864-11334557 1.0000 100 chr6:90509307-90509802 1.0000 100 chr15:48482819-48483808 1.0000 100 chr11:70496213-70496810 1.0000 100 chr2:220172782-220173837 1.0000 100 chr10:106584190-10658451 1.0000 100 chr11:66056984-66057530 1.0000 100 chr8:65292477-65292978 1.0000 100 chr15:44579876-44581256 1.0000 100 chr3:170302126-170302893 1.0000 100 chrX:153140550-153141687 1.0000 100 chr1:50774499-50775126 1.0000 100 chr14:93380364-93380989 1.0000 100 chr1:236451150-236451759 1.0000 100 chr12:131432640-13143323 1.0000 100 chr3:54222221-54222707 1.0000 100 chr2:200733704-200734901 1.0000 100 chr8:108507039-108508662 1.0000 100 chr9:140778845-140779360 1.0000 100 chr12:119498825-11949941 1.0000 100 chr8:103395185-103395890 1.0000 100 chr22:37040282-37040629 1.0000 100 chr17:4396590-4396940 1.0000 100 chr11:44692479-44693047 1.0000 100 chr4:94068563-94069336 1.0000 100 chr2:129931599-129932475 1.0000 100 chr7:100026588-100026964 1.0000 100 chr2:44362422-44362954 1.0000 100 chr3:142585507-142586079 1.0000 100 chr9:134674573-134675112 1.0000 100 chr5:120187802-120188406 1.0000 100 chr9:1995039-1995595 1.0000 100 chr11:116249966-11625050 1.0000 100 chr8:79065424-79065967 1.0000 100 chr7:126747661-126748369 1.0000 100 chr17:19364312-19364721 1.0000 100 chr19:54974936-54975736 1.0000 100 chr6:4893936-4895523 1.0000 100 chr3:115044212-115044784 1.0000 100 chr22:27247840-27248548 1.0000 100 chr22:22496492-22497430 1.0000 100 chr15:71342410-71342966 1.0000 100 chr1:11695894-11696261 1.0000 100 chr10:86051013-86051532 1.0000 100 chr3:21683397-21683795 1.0000 100 chr2:119863849-119864402 1.0000 100 chr20:1986514-1987323 1.0000 100 chr16:17232744-17233230 1.0000 100 chr6:158956886-158957414 1.0000 100 chr5:135700792-135701419 1.0000 100 chr20:30556178-30556801 1.0000 100 chr19:12943017-12943987 1.0000 100 chr9:7052675-7053585 1.0000 100 chr8:53164788-53165288 1.0000 100 chr3:126881679-126882210 1.0000 100 chrX:73479548-73480280 1.0000 100 chr7:154106785-154107268 1.0000 100 chr18:11714291-11714841 1.0000 100 chr12:108608197-10860882 1.0000 100 chr1:11533497-11534083 1.0000 100 chr1:32253723-32254862 1.0000 100 chr16:26231906-26232825 1.0000 100 chr12:119060119-11906068 1.0000 100 chr8:61588773-61589503 1.0000 100 chr5:159593226-159593842 1.0000 100 chr2:24270229-24270558 1.0000 100 chr20:41669003-41669413 1.0000 100 chr1:22937962-22938546 1.0000 100 chr11:74925402-74925782 1.0000 100 chr1:30224984-30225365 1.0000 100 chr8:67089687-67090069 1.0000 100 chr4:113261241-113261969 1.0000 100 chr3:63053348-63054070 1.0000 100 chr3:48698951-48699864 1.0000 100 chr18:44082230-44082958 1.0000 100 chr16:49191929-49192484 1.0000 100 chr1:153394779-153395304 1.0000 100 chr4:189029220-189029687 1.0000 100 chr16:24266985-24267547 1.0000 100 chr6:114661920-114662769 1.0000 100 chr2:189168213-189168955 1.0000 100 chr8:41753441-41754039 1.0000 100 chr5:152655726-152656090 1.0000 100 chr5:141218041-141219137 1.0000 100 chr2:212226061-212226798 1.0000 100 chr1:7135206-7135741 1.0000 100 chr18:35144742-35145403 1.0000 100 chr7:76302666-76303107 1.0000 100 chr6:88829451-88829907 1.0000 100 chr12:28613125-28614054 1.0000 100 chr7:70322682-70323139 1.0000 100 chr1:230563708-230564140 1.0000 100 chr5:175298363-175299076 1.0000 100 chr6:122773431-122773926 1.0000 100 chr3:127177381-127177856 1.0000 100 chr19:54431014-54431368 1.0000 100 chr19:34231657-34232289 1.0000 100 chr16:23038133-23038472 1.0000 100 chrX:199983-200541 1.0000 100 chr8:50824108-50824594 1.0000 100 chr6:34100355-34100674 1.0000 100 chr4:119590374-119590697 1.0000 100 chr3:117041738-117042086 1.0000 100 chr19:36319570-36320103 1.0000 100 chr12:113917788-11391846 1.0000 100 chr10:120355420-12035597 1.0000 100 chr16:17877918-17878299 1.0000 100 chr6:34083118-34083507 1.0000 100 chr6:146349183-146349911 1.0000 100 chr4:8569922-8570425 1.0000 100 chr4:115483397-115483940 1.0000 100 chr3:2345241-2345904 1.0000 100 chr3:104265962-104266345 1.0000 100 chr18:55021033-55021461 1.0000 100 chr12:2861843-2862173 1.0000 100 chr18:47088177-47088530 1.0000 100 chr19:46455809-46456826 1.0000 100 chr2:29516713-29517052 1.0000 100 chr11:134897407-13489773 1.0000 100 chr9:128456531-128457206 1.0000 100 chr7:26775613-26776211 1.0000 100 chr6:129275817-129276225 1.0000 100 chr5:176230753-176231282 1.0000 100 chr5:151625992-151626537 1.0000 100 chr1:99603171-99603492 1.0000 100 chr4:185114558-185115107 1.0000 100 chr1:67865566-67866007 1.0000 100 chr19:36466527-36466898 1.0000 100 chr7:7937057-7937830 1.0000 100 chr7:35054967-35055396 1.0000 100 chr5:16178708-16179261 1.0000 100 chr3:10636604-10636939 1.0000 100 chr17:56197576-56198265 1.0000 100 chr17:49990323-49990716 1.0000 100 chr13:94342280-94343026 1.0000 100 chr10:23164993-23165532 1.0000 100 chr1:11905619-11906123 1.0000 100 chr9:34430770-34431129 1.0000 100 chr8:62200374-62200949 1.0000 100 chr4:163084977-163085576 1.0000 100 chr20:10199717-10200712 1.0000 100 chr18:44077137-44077465 1.0000 100 chr6:62737195-62737592 1.0000 100 chr1:175028692-175030074 1.0000 100 chrX:50357311-50357997 1.0000 100 chrX:114828476-114829050 1.0000 100 chr9:120031206-120031905 1.0000 100 chr7:53394325-53394746 1.0000 100 chr7:133619194-133619852 1.0000 100 chr6:98651117-98651650 1.0000 100 chr5:6328153-6328615 1.0000 100 chr5:158526945-158527618 1.0000 100 chr22:33472134-33472916 1.0000 100 chr2:204598883-204599421 1.0000 100 chr2:154720402-154720912 1.0000 100 chr16:89992506-89993092 1.0000 100 chr14:82541942-82542309 1.0000 100 chr13:79163385-79163779 1.0000 100 chr7:25901756-25902479 1.0000 100 chr6:24127052-24127369 1.0000 100 chr5:116199990-116200537 1.0000 100 chr18:68971736-68972423 1.0000 100 chr16:83453863-83454186 1.0000 100 chr6:108501037-108502044 1.0000 100 chr17:19361884-19362816 1.0000 100 chr1:178235692-178236237 1.0000 100 chr6:19988844-19989352 1.0000 100 chr2:62581965-62582597 1.0000 100 chr19:5404057-5404391 1.0000 100 chr19:39714287-39714686 1.0000 100 chr17:77290580-77290942 1.0000 100 chr14:41754424-41754970 1.0000 100 chr1:38260566-38261376 1.0000 100 chr9:84164308-84164841 1.0000 100 chr9:132552745-132553062 1.0000 100 chr12:119082870-11908348 1.0000 100 chr1:22952670-22953434 1.0000 100 chr17:33032889-33033427 1.0000 100 chr15:77994885-77995239 1.0000 100 chr8:105040857-105041456 1.0000 100 chr3:151110959-151111812 1.0000 100 chr1:59170016-59170694 1.0000 100 chr12:131011383-13101173 1.0000 100 chr8:57357869-57358448 1.0000 100 chr4:122717515-122718152 1.0000 100 chr20:61747601-61748172 1.0000 100 chr5:3123625-3124232 1.0000 100 chr2:44243272-44243856 1.0000 100 chr2:98962812-98963308 1.0000 100 chrX:150645144-150645489 1.0000 100 chr8:71291932-71292645 1.0000 100 chr5:159546488-159547063 1.0000 100 chr8:74218824-74219638 1.0000 100 chr7:84541214-84541987 1.0000 100 chr7:136084181-136084578 1.0000 100 chr6:99237141-99237565 1.0000 100 chr6:139298892-139299365 1.0000 100 chr6:104570858-104571467 1.0000 100 chr4:38490497-38490903 1.0000 100 chr4:136304858-136305559 1.0000 100 chr2:162225781-162226214 1.0000 100 chr20:6745286-6745717 1.0000 100 chr20:60071948-60072560 1.0000 100 chr20:47139683-47140160 1.0000 100 chr16:7063820-7064467 1.0000 100 chr15:52688384-52689081 1.0000 100 chr9:134651895-134652250 1.0000 100 chr6:33085707-33086557 1.0000 100 chr6:25652246-25652797 1.0000 100 chr2:116354295-116354874 1.0000 100 chr14:67735183-67735649 1.0000 100 chr12:9517117-9517450 1.0000 100 chr11:31259990-31260716 1.0000 100 chr3:11006334-11006816 1.0000 100 chr19:47940644-47941142 1.0000 100 chr11:88034210-88034889 1.0000 100 chr3:124607758-124608196 1.0000 100 chr13:100847633-10084820 1.0000 100 chr5:141122985-141123485 1.0000 100 chr2:69677849-69678439 1.0000 100 chr19:46721434-46721967 1.0000 100 chr20:44657848-44658386 1.0000 100 chr3:56528710-56529053 1.0000 100 chr3:174257910-174258959 1.0000 100 chr1:175712098-175712936 1.0000 100 chr6:96564354-96565092 1.0000 100 chr2:27061370-27061753 1.0000 100 chr19:15126748-15127143 1.0000 100 chr18:44786508-44787108 1.0000 100 chr12:77266118-77266606 1.0000 100 chr2:8820859-8821537 1.0000 100 chr16:12755595-12756092 1.0000 100 chr9:80190774-80191231 1.0000 100 chr1:26745400-26745906 1.0000 100 chr2:207507386-207507742 1.0000 100 chr14:34420329-34420853 1.0000 100 chr11:76653225-76653711 1.0000 100 chr8:35050033-35050599 1.0000 100 chr3:110317702-110318175 1.0000 100 chr9:138048360-138048718 1.0000 100 chr16:7232515-7232986 1.0000 100 chr3:119079794-119080245 1.0000 100 chr19:50143341-50143901 1.0000 100 chr9:128463108-128464186 1.0000 100 chr7:131955101-131955899 1.0000 100 chr7:100701690-100702031 1.0000 100 chr5:71358881-71359380 1.0000 100 chr5:52230435-52230899 1.0000 100 chr3:78396319-78396741 1.0000 100 chr3:113897399-113897959 1.0000 100 chr2:59061378-59061927 1.0000 100 chr17:65970915-65971650 1.0000 100 chr1:50745671-50745969 1.0000 100 chr13:88150794-88151280 1.0000 100 chr12:16942106-16942652 1.0000 100 chr10:20276712-20277130 1.0000 100 chrX:30237633-30238305 1.0000 100 chr7:114570017-114570519 1.0000 100 chr7:110584946-110585436 1.0000 100 chr5:93209819-93210167 1.0000 100 chr3:77328049-77328904 1.0000 100 chr20:37507466-37507779 1.0000 100 chr19:13763594-13763989 1.0000 100 chr17:61994063-61994627 1.0000 100 chr14:50347880-50348557 1.0000 100 chr13:64913725-64914115 1.0000 100 chr1:30446942-30447549 1.0000 100 chr12:83591267-83591872 1.0000 100 chr11:7098388-7098704 1.0000 100 chr11:103834366-10383483 1.0000 100 chr10:26656786-26657117 1.0000 100 chr20:34972940-34973265 1.0000 100 chr3:104238661-104239265 1.0000 100 chr18:60499561-60499889 1.0000 100 chr10:13442564-13442920 1.0000 100 chr10:52378861-52379456 1.0000 100 chr9:28970165-28970564 1.0000 100 chr16:83735191-83735496 1.0000 100 chr11:61407542-61407931 1.0000 100 chr21:44377036-44377506 1.0000 100 chr20:44685926-44686458 1.0000 100 chr17:70161412-70161916 1.0000 100 chr15:89542149-89542801 1.0000 100 chr13:53424464-53425082 1.0000 100 chr10:89733292-89733724 1.0000 100 chr11:41136407-41136978 1.0000 100 chr2:63973770-63974061 1.0000 100 chr19:12444437-12444831 1.0000 100 chr1:33896608-33896919 1.0000 100 chr5:92918430-92919211 1.0000 100 chr5:54920928-54921285 1.0000 100 chr16:16064876-16065350 1.0000 100 chr12:57634738-57635182 1.0000 100 chr11:122852514-12285283 1.0000 100 chr7:14024610-14025305 1.0000 100 chr19:15125219-15125741 1.0000 100 chr10:83737823-83738533 1.0000 100 chr9:10339050-10339465 1.0000 100 chr7:130775647-130775954 1.0000 100 chr6:21741462-21742115 1.0000 100 chr5:6686991-6687610 1.0000 100 chr5:170108264-170108559 1.0000 100 chr4:27892317-27892666 1.0000 100 chr18:60544176-60545003 1.0000 100 chr15:53364418-53364833 1.0000 100 chr1:45917895-45918227 1.0000 100 chr13:72333861-72334234 1.0000 100 chr11:43975881-43976206 1.0000 100 chr11:113861868-11386226 1.0000 100 chr10:61024905-61025283 1.0000 100 chr10:10207316-10207974 1.0000 100 chr1:183603211-183604095 1.0000 100 chr9:2158219-2159267 1.0000 100 chr8:22399262-22399774 1.0000 100 chr5:94138185-94138542 1.0000 100 chr3:180473411-180473877 1.0000 100 chr2:79503076-79503535 1.0000 100 chr21:17131791-17132146 1.0000 100 chr18:9574678-9575103 1.0000 100 chr15:66297022-66297536 1.0000 100 chr15:59713185-59713711 1.0000 100 chr14:66393122-66393631 1.0000 100 chr14:63247930-63248426 1.0000 100 chr11:69453708-69454080 1.0000 100 chr11:6822329-6822994 1.0000 100 chr10:73104320-73104733 1.0000 100 chr15:76194303-76194768 1.0000 100 chr18:33068499-33069039 1.0000 100 chr2:30142764-30143506 1.0000 100 chr16:8076294-8076837 1.0000 100 chr10:95826192-95826726 1.0000 100 chr20:19730306-19730683 1.0000 100 chr2:190983922-190984331 1.0000 100 chr1:71053451-71053776 1.0000 100 chr1:30209478-30209809 1.0000 100 chr17:33124763-33125374 1.0000 100 chr21:37469326-37469638 1.0000 100 chrX:13216672-13217322 1.0000 100 chr6:21692120-21692542 1.0000 100 chr5:145720100-145720426 1.0000 100 chr10:99751660-99752007 1.0000 100 chr2:120060728-120061213 1.0000 100 chr18:70111918-70112278 1.0000 100 chr7:8658239-8658872 1.0000 100 chr14:79452085-79452548 1.0000 100 chr14:48730073-48731029 1.0000 100 chr12:26040001-26040613 1.0000 100 chr1:154159803-154160120 1.0000 100 chr10:35931076-35931461 1.0000 100 chr5:95806980-95807322 1.0000 100 chr15:80681679-80682071 1.0000 100 chr11:22355440-22355932 1.0000 100 chr2:148795290-148795598 1.0000 100 chr8:72928396-72928760 1.0000 100 chr8:70371785-70372943 1.0000 100 chr7:138867140-138867486 1.0000 100 chr7:116778957-116779477 1.0000 100 chr20:10332948-10333303 1.0000 100 chr1:177568224-177568562 1.0000 100 chr8:97855833-97856220 1.0000 100 chr6:105335273-105335580 1.0000 100 chr22:39638906-39639791 1.0000 100 chr1:11919353-11919958 1.0000 100 chr6:4889913-4890442 1.0000 100 chr16:89103794-89104309 1.0000 100 chr1:188058348-188058969 1.0000 100 chr3:31183530-31183958 1.0000 100 chr3:115978762-115979156 1.0000 100 chr1:230562137-230562630 1.0000 100 chr10:105038599-10503908 1.0000 100 chr11:66175933-66176508 1.0000 100 chr3:164658699-164659601 1.0000 100 chr13:53422688-53423033 1.0000 100 chr19:34258812-34259136 1.0000 100 chr14:57366562-57366970 1.0000 100 chr1:16867143-16867555 1.0000 100 chr11:63298741-63299362 1.0000 100 chr18:44077506-44077759 1.0000 100 chr16:8396364-8396864 1.0000 100 chr11:69336331-69336688 1.0000 100 chr1:95126989-95127305 1.0000 100 chr20:44660334-44660912 1.0000 100 chr3:18385764-18386782 1.0000 100 chr11:22359772-22360450 1.0000 100 chr18:47087772-47088127 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme cutnotseq_memechip_out/seqs-centered -oc cutnotseq_memechip_out/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile cutnotseq_memechip_out/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 444 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 44400 N= 444 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.266 C 0.234 G 0.234 T 0.266 Background letter frequencies (from cutnotseq_memechip_out/background): A 0.268 C 0.232 G 0.232 T 0.268 ******************************************************************************** ******************************************************************************** MOTIF TCAGSACCATGGACAGCDCCM MEME-1 width = 21 sites = 79 llr = 1503 E-value = 1.7e-332 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCAGSACCATGGACAGCDCCM MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::a:1a::51::9:a:13113 pos.-specific C 1a::5:aa23::18::8:674 probability G :::a3:::21aa:1:a:32:1 matrix T 9:::1:::26::::::14122 bits 2.1 * * ** * 1.9 *** ** ** ** 1.7 *** *** ** ** 1.5 *** *** *** ** Relative 1.3 **** *** ******* Entropy 1.1 **** *** ******* (27.4 bits) 0.8 **** *** ******* * 0.6 **** *** ******* * 0.4 ******** *********** 0.2 ********************* 0.0 --------------------- Multilevel TCAGCACCATGGACAGCTCCC consensus G TC G A sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCAGSACCATGGACAGCDCCM MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chr7:126747661-126748369 - 7 6.04e-13 GAATGAATAG TCAGCACCATGGACAGCTCCA AGCACA chr11:74925402-74925782 + 53 2.05e-12 AGTGAAGATG TCAGCACCTTGGACAGCGCCC AACCCATTAC chr11:122852514-12285283 - 44 8.48e-12 CCGGTGGTGT TCAGCACCGCGGACAGCTCCC CGCCCCGCCC chr14:82541942-82542309 + 30 8.48e-12 TACCTCCTGC TCAGCACCTTGGACAGCACCA GCCTGTTCAA chr8:67089687-67090069 - 50 9.90e-12 CCCAGGCGCT TCAGCACCGCGGACAGCGCCC ATCCGAATCA chr19:34258812-34259136 - 30 1.41e-11 GGGCTGCACG TCAGGACCCTGGACAGCTCCA TCAGCGCTCA chr4:119590374-119590697 + 33 1.69e-11 TGAGAACTGC TCAGTACCATGGACAGCTCCC TGCACTCCAG chr7:100701690-100702031 + 47 1.95e-11 CTGCCCGGGT TCAGTACCATGGACAGCGCCC TCGACCCGCT chr3:170302126-170302893 + 37 1.95e-11 CTGAGAACTT TCAGCACCGCGGACAGCGCCA TTCCCTGCAC chr17:77290580-77290942 + 29 3.87e-11 AGGCAGGAGT TCAGCACCACGGACAGCGACC TGCGGGTGGG chr20:34972940-34973265 + 53 4.51e-11 GGTTGGGATT TCAGAACCTTGGACAGCTCCC AGTGGACCTG chr5:152655726-152656090 + 43 4.51e-11 TGGCAGAAGT TCAGGACCATGGACAGCATCC CGGACAGTTG chr9:138048360-138048718 - 68 5.24e-11 GCTTGGGAGG TCAGCACCATGGACAGATCCC ACTGAGGCGC chr14:96401388-96402140 - 36 5.24e-11 GCAAAATAGA TCAGCACCATGGAGAGCTCCT TCCAGTCACC chr4:8581990-8582926 + 35 5.24e-11 GTGAGCGCAT TCAGCACCCTGGACAGCACCG CGGTTGCGCT chr2:30142764-30143506 + 60 6.05e-11 GAGCCGCCCT TCAGCACCCTGGACAGCGTCC GGGCCTCTGC chr15:77994885-77995239 + 4 6.05e-11 GGT TCAGCACCCCGGACAGCTGCC TTCCTGACTA chr18:44077137-44077465 - 33 6.05e-11 AGAGGCGGGT TCAGCACCGTGGACAGCTCTA AACCACTCCA chr6:34083118-34083507 + 43 6.86e-11 AGGTCCTGGT TCAGGACCTTGGACAGCAGCC TCCAGGGGTC chr4:180018762-180019489 - 10 7.77e-11 AGCAAGTGCA TCAGCACCATGGAGAGCTCCG TGACAAAGC chr6:96564354-96565092 - 61 1.02e-10 AGTAATTTTT TCAGCACCACGGACAGTTCCA CCCCCCTTTA chr12:131011383-13101173 - 43 1.46e-10 TCAGTGACCA TCAGGACCCTGGACAGCAGCA ACCACTCGCC chr16:83453863-83454186 + 33 1.46e-10 GAAAAATTGT TCAGTACCAAGGACAGCTCCC TAGAAAGCTT chr18:44082230-44082958 + 37 1.46e-10 AGAGAAGGAG TCAGAACCACGGACAGCTCCT CTTGCCCCTG chr5:145720100-145720426 - 39 1.64e-10 AGGGCAAATT TCAGCACCACGGACAGCACAA GTACACTCAG chr11:61334449-61335293 - 1 1.64e-10 GACAGCTGTT TCAGCACCTTGGACAGCTCTG chr20:37309008-37309746 - 21 1.86e-10 AACAGAATAC TCAGGACCCTGGACAGCTCAC AGTGTCCGCT chr11:113344864-11334557 + 53 2.09e-10 GAACGAAAGT TCAGGACCAAGGACAGCGGCA ACCGTGGGAG chr19:54406207-54406846 - 37 2.09e-10 AGACAACACT TCAGAACCATGGACAGCGCTA TTCGAGCACA chr20:44669306-44670082 - 69 2.09e-10 ATGCTGTGTT TCAGCACCGTGGACAGCGGTC TCGGGGGCCG chr1:30209478-30209809 - 33 2.32e-10 AGGATTCCAT TCAGCACCATGGACAGAGCCT GCCTTCTTGG chr19:15126748-15127143 - 67 2.32e-10 GCTGTCCAGT TCAGCACCACGGACAGCGTTC CACCAGTCCC chr1:37486083-37486871 - 34 2.32e-10 ACCTCTGTGT TCAGCACCACGGAGAGCAGCC AGGGCCGGGG chr11:113861868-11386226 + 54 2.57e-10 GATGAGAGCT TCAGCACCACGGCCAGCACCA GCTGGTTTGG chr10:83737823-83738533 + 48 2.88e-10 TCTATAACTT TCAGGACCTTGGACAGCTTCT TTGCTTCAAG chr1:50745671-50745969 - 56 2.88e-10 CCCTACAGAT TCAGGACCACGGCCAGCACCC ACACTGCCTT chr5:151303906-151304733 + 47 2.88e-10 GCGAGGCGTT TCAGCACCACGGAGAGCGTCC AGACCTGCTT chr16:7232515-7232986 + 6 3.24e-10 AGGGA TCAGCACCCTGGACAGCATCT CTTTCATTTC chr9:134651895-134652250 + 29 3.62e-10 ctcAAGCGGT GCAGGACCCTGGACAGCTCCC AGGCTCTGAG chr17:4396590-4396940 - 24 3.62e-10 CAGCGATGAT TCAGGACCATGGAGAGCATCC CGCGTGCAAC chr16:83735191-83735496 + 32 3.99e-10 CAGCCCCACT TCAGCACCACGGTCAGCACCC ACCAATTGCC chr18:34849774-34850592 - 35 4.45e-10 CACAGACAGC CCAGCACCTTGGACAGCTCCT AGACTATTTT chr13:79163385-79163779 - 8 4.98e-10 CGCAAGGTTT TCAGCACCGCGGCCAGCTCCA GGGAGGG chr19:5404057-5404391 - 60 6.81e-10 CCAGCACCGT TCAGTACCACGGACAGCGACA CAGCCCTGGT chr1:11695894-11696261 - 43 6.81e-10 GAGAGGCGCT TCAGCACTGCGGACAGCGCCC TGCCAGCCTC chr5:161495485-161495885 + 49 7.53e-10 CAAACATGGT TCAGCACCAGGGACAGCAGTC CTGGTGAGGG chr10:61024905-61025283 + 63 8.35e-10 AATCCTGGTT TCAGGACCATGGACAGTGACA CGTGGCCATC chr3:10636604-10636939 + 32 8.35e-10 CCCCAGCTGA TCAGGACCTTGGATAGCTCCA GGTGCCTCTG chr6:146349183-146349911 - 32 1.02e-09 CCTGCCGCCT TCAGGACCCTGGACAGTGCTC GGTCCAGCCA chr6:34100355-34100674 + 31 1.02e-09 AGGTGCTGTT TCAGCACCTCGGTCAGCGCCA CAAGGCTGGG chr6:24127052-24127369 + 26 1.11e-09 AGAAATGTTT TCAGAACCTTGGAGAGCTCCT TGGGCGCCAC chr19:54431014-54431368 - 11 1.11e-09 CAACTGGGTT TCAGGACCATGGACAGGTGCA CTGGCGTCGA chr16:7063820-7064467 - 52 1.36e-09 TGTCAAAGTT TCAGCACCTTGGACAGTTCTT TTTGAGCATT chr9:34430770-34431129 - 32 1.36e-09 GGGAGGTGGT TCAGAACCCTGGAGAGCTCCT CCTGTTTGTG chr22:37040282-37040629 - 63 1.49e-09 CCCACTTGCT TCAGCACCTTGGAGAGCATCT TCCAACTACT chr11:7098388-7098704 + 33 1.63e-09 ACCAGAGAAA GCAGGACCCTGGACAGCGCCG AGAGCCCACA chr5:94138185-94138542 - 47 1.79e-09 AAATGTATAA TCAGGACCAAGGACAGATCCT TCATTGTCTT chr20:47139683-47140160 - 13 1.97e-09 TGAAATCATT TCAGCACCTAGGACAGCTCAG TGCTCAGTGC chr7:154106785-154107268 - 6 1.97e-09 CCTTTCAAAA TCAGGACCTTGGAGAGCGACT GGGCT chr19:36466527-36466898 + 50 2.16e-09 ACAACAACGA TCAGAACCATGGACAGCAGTT CAGGCATTTG chr1:30224984-30225365 - 15 2.16e-09 CAGGTGGGTT TCAGCACCGCGGAGAGCTCTG AGGGGATGCC chr16:23038133-23038472 + 27 2.58e-09 TTGGTTAGAT TCAGCACCGTGGACAGCAGAG ATGCTGCCAG chr13:94342280-94343026 + 22 2.82e-09 GTTAGAAAGT CTAGGACCATGGACAGCTCCC TGGCAGCTGA chr16:17877918-17878299 - 60 3.09e-09 GAAGACTTTT TCAGCACCAAGGACAGCAAAA CGTCATCGTA chr10:26656786-26657117 + 26 3.38e-09 AAGGGATGGT TCAGCACCAAGGACAGGGGCA CACGGGCCCG chr12:2861843-2862173 - 44 3.38e-09 AGGAACCTCT CCAGGACCAGGGACAGCGCTC ACCCGCCGCG chr9:132552745-132553062 - 48 3.67e-09 ACTGTGACTT TCAGGACCAGAGACAGCGCCC CGGATCCACA chr10:106584190-10658451 - 72 4.35e-09 TTATATCT CCAGCACCTGGGACAGCGCTC AGCACCTCCA chr2:207507386-207507742 + 50 6.59e-09 AACGCCAACT TCAGTACCTTGGACAGAGTCC TGCCCTCTGA chr6:105335273-105335580 + 38 9.82e-09 TTCAGCAAAT TCAGGACCATGGACAGTAATG CACGTGCCCT chr7:154861581-154862290 + 21 1.06e-08 GGGGAGCGCA GCAGCACCGCGGACAGCCCCA AAGCCGCGCG chr3:117041738-117042086 - 45 1.44e-08 CCAAGATAAT TCAGCACCATGGATAGTAACA TGTAGATAGC chr6:88829451-88829907 - 26 2.58e-08 TGAATGTTTT TTAGTACCAAGGACAGCGACA GCTGTCACCT chr19:50490316-50490974 - 56 7.07e-08 GGGTATGGGT TCAGCACTAGGGACAGCAGGC AGCTGGGCAC chr16:49191929-49192484 - 8 8.55e-08 CCGCTTCTAA ACAGAACCCTGGACAGTGCAC AACAGCA chr8:10847647-10848192 - 4 1.66e-07 CCACGATGGG TTGTGACCATGGACAGCTCCC TTT chr8:62200374-62200949 + 26 2.21e-07 CCCACCCAGT TCAGCAGCGAGGACACCTGCA GAAATACATT chr10:120355420-12035597 - 14 2.62e-07 GTGAGGGTCC TCAGGTCCGCGACCAGCTCCA GGCTCTGCTG chr5:116199990-116200537 + 54 8.27e-07 TTTACAGTTC ACAGGTCTTTGGAGAGCTCTA GTTTGCATGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCAGSACCATGGACAGCDCCM MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:126747661-126748369 6e-13 6_[-1]_73 chr11:74925402-74925782 2.1e-12 52_[+1]_27 chr11:122852514-12285283 8.5e-12 43_[-1]_36 chr14:82541942-82542309 8.5e-12 29_[+1]_50 chr8:67089687-67090069 9.9e-12 49_[-1]_30 chr19:34258812-34259136 1.4e-11 29_[-1]_50 chr4:119590374-119590697 1.7e-11 32_[+1]_47 chr7:100701690-100702031 1.9e-11 46_[+1]_33 chr3:170302126-170302893 1.9e-11 36_[+1]_43 chr17:77290580-77290942 3.9e-11 28_[+1]_51 chr20:34972940-34973265 4.5e-11 52_[+1]_27 chr5:152655726-152656090 4.5e-11 42_[+1]_37 chr9:138048360-138048718 5.2e-11 67_[-1]_12 chr14:96401388-96402140 5.2e-11 35_[-1]_44 chr4:8581990-8582926 5.2e-11 34_[+1]_45 chr2:30142764-30143506 6e-11 59_[+1]_20 chr15:77994885-77995239 6e-11 3_[+1]_76 chr18:44077137-44077465 6e-11 32_[-1]_47 chr6:34083118-34083507 6.9e-11 42_[+1]_37 chr4:180018762-180019489 7.8e-11 9_[-1]_70 chr6:96564354-96565092 1e-10 60_[-1]_19 chr12:131011383-13101173 1.5e-10 42_[-1]_37 chr16:83453863-83454186 1.5e-10 32_[+1]_47 chr18:44082230-44082958 1.5e-10 36_[+1]_43 chr5:145720100-145720426 1.6e-10 38_[-1]_41 chr11:61334449-61335293 1.6e-10 [-1]_79 chr20:37309008-37309746 1.9e-10 20_[-1]_59 chr11:113344864-11334557 2.1e-10 52_[+1]_27 chr19:54406207-54406846 2.1e-10 36_[-1]_43 chr20:44669306-44670082 2.1e-10 68_[-1]_11 chr1:30209478-30209809 2.3e-10 32_[-1]_47 chr19:15126748-15127143 2.3e-10 66_[-1]_13 chr1:37486083-37486871 2.3e-10 33_[-1]_46 chr11:113861868-11386226 2.6e-10 53_[+1]_26 chr10:83737823-83738533 2.9e-10 47_[+1]_32 chr1:50745671-50745969 2.9e-10 55_[-1]_24 chr5:151303906-151304733 2.9e-10 46_[+1]_33 chr16:7232515-7232986 3.2e-10 5_[+1]_74 chr9:134651895-134652250 3.6e-10 28_[+1]_51 chr17:4396590-4396940 3.6e-10 23_[-1]_56 chr16:83735191-83735496 4e-10 31_[+1]_48 chr18:34849774-34850592 4.5e-10 34_[-1]_45 chr13:79163385-79163779 5e-10 7_[-1]_72 chr19:5404057-5404391 6.8e-10 59_[-1]_20 chr1:11695894-11696261 6.8e-10 42_[-1]_37 chr5:161495485-161495885 7.5e-10 48_[+1]_31 chr10:61024905-61025283 8.3e-10 62_[+1]_17 chr3:10636604-10636939 8.3e-10 31_[+1]_48 chr6:146349183-146349911 1e-09 31_[-1]_48 chr6:34100355-34100674 1e-09 30_[+1]_49 chr6:24127052-24127369 1.1e-09 25_[+1]_54 chr19:54431014-54431368 1.1e-09 10_[-1]_69 chr16:7063820-7064467 1.4e-09 51_[-1]_28 chr9:34430770-34431129 1.4e-09 31_[-1]_48 chr22:37040282-37040629 1.5e-09 62_[-1]_17 chr11:7098388-7098704 1.6e-09 32_[+1]_47 chr5:94138185-94138542 1.8e-09 46_[-1]_33 chr20:47139683-47140160 2e-09 12_[-1]_67 chr7:154106785-154107268 2e-09 5_[-1]_74 chr19:36466527-36466898 2.2e-09 49_[+1]_30 chr1:30224984-30225365 2.2e-09 14_[-1]_65 chr16:23038133-23038472 2.6e-09 26_[+1]_53 chr13:94342280-94343026 2.8e-09 21_[+1]_58 chr16:17877918-17878299 3.1e-09 59_[-1]_20 chr10:26656786-26657117 3.4e-09 25_[+1]_54 chr12:2861843-2862173 3.4e-09 43_[-1]_36 chr9:132552745-132553062 3.7e-09 47_[-1]_32 chr10:106584190-10658451 4.4e-09 71_[-1]_8 chr2:207507386-207507742 6.6e-09 49_[+1]_30 chr6:105335273-105335580 9.8e-09 37_[+1]_42 chr7:154861581-154862290 1.1e-08 20_[+1]_59 chr3:117041738-117042086 1.4e-08 44_[-1]_35 chr6:88829451-88829907 2.6e-08 25_[-1]_54 chr19:50490316-50490974 7.1e-08 55_[-1]_24 chr16:49191929-49192484 8.5e-08 7_[-1]_72 chr8:10847647-10848192 1.7e-07 3_[-1]_76 chr8:62200374-62200949 2.2e-07 25_[+1]_54 chr10:120355420-12035597 2.6e-07 13_[-1]_66 chr5:116199990-116200537 8.3e-07 53_[+1]_26 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCAGSACCATGGACAGCDCCM MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCAGSACCATGGACAGCDCCM width=21 seqs=79 chr7:126747661-126748369 ( 7) TCAGCACCATGGACAGCTCCA 1 chr11:74925402-74925782 ( 53) TCAGCACCTTGGACAGCGCCC 1 chr11:122852514-12285283 ( 44) TCAGCACCGCGGACAGCTCCC 1 chr14:82541942-82542309 ( 30) TCAGCACCTTGGACAGCACCA 1 chr8:67089687-67090069 ( 50) TCAGCACCGCGGACAGCGCCC 1 chr19:34258812-34259136 ( 30) TCAGGACCCTGGACAGCTCCA 1 chr4:119590374-119590697 ( 33) TCAGTACCATGGACAGCTCCC 1 chr7:100701690-100702031 ( 47) TCAGTACCATGGACAGCGCCC 1 chr3:170302126-170302893 ( 37) TCAGCACCGCGGACAGCGCCA 1 chr17:77290580-77290942 ( 29) TCAGCACCACGGACAGCGACC 1 chr20:34972940-34973265 ( 53) TCAGAACCTTGGACAGCTCCC 1 chr5:152655726-152656090 ( 43) TCAGGACCATGGACAGCATCC 1 chr9:138048360-138048718 ( 68) TCAGCACCATGGACAGATCCC 1 chr14:96401388-96402140 ( 36) TCAGCACCATGGAGAGCTCCT 1 chr4:8581990-8582926 ( 35) TCAGCACCCTGGACAGCACCG 1 chr2:30142764-30143506 ( 60) TCAGCACCCTGGACAGCGTCC 1 chr15:77994885-77995239 ( 4) TCAGCACCCCGGACAGCTGCC 1 chr18:44077137-44077465 ( 33) TCAGCACCGTGGACAGCTCTA 1 chr6:34083118-34083507 ( 43) TCAGGACCTTGGACAGCAGCC 1 chr4:180018762-180019489 ( 10) TCAGCACCATGGAGAGCTCCG 1 chr6:96564354-96565092 ( 61) TCAGCACCACGGACAGTTCCA 1 chr12:131011383-13101173 ( 43) TCAGGACCCTGGACAGCAGCA 1 chr16:83453863-83454186 ( 33) TCAGTACCAAGGACAGCTCCC 1 chr18:44082230-44082958 ( 37) TCAGAACCACGGACAGCTCCT 1 chr5:145720100-145720426 ( 39) TCAGCACCACGGACAGCACAA 1 chr11:61334449-61335293 ( 1) TCAGCACCTTGGACAGCTCTG 1 chr20:37309008-37309746 ( 21) TCAGGACCCTGGACAGCTCAC 1 chr11:113344864-11334557 ( 53) TCAGGACCAAGGACAGCGGCA 1 chr19:54406207-54406846 ( 37) TCAGAACCATGGACAGCGCTA 1 chr20:44669306-44670082 ( 69) TCAGCACCGTGGACAGCGGTC 1 chr1:30209478-30209809 ( 33) TCAGCACCATGGACAGAGCCT 1 chr19:15126748-15127143 ( 67) TCAGCACCACGGACAGCGTTC 1 chr1:37486083-37486871 ( 34) TCAGCACCACGGAGAGCAGCC 1 chr11:113861868-11386226 ( 54) TCAGCACCACGGCCAGCACCA 1 chr10:83737823-83738533 ( 48) TCAGGACCTTGGACAGCTTCT 1 chr1:50745671-50745969 ( 56) TCAGGACCACGGCCAGCACCC 1 chr5:151303906-151304733 ( 47) TCAGCACCACGGAGAGCGTCC 1 chr16:7232515-7232986 ( 6) TCAGCACCCTGGACAGCATCT 1 chr9:134651895-134652250 ( 29) GCAGGACCCTGGACAGCTCCC 1 chr17:4396590-4396940 ( 24) TCAGGACCATGGAGAGCATCC 1 chr16:83735191-83735496 ( 32) TCAGCACCACGGTCAGCACCC 1 chr18:34849774-34850592 ( 35) CCAGCACCTTGGACAGCTCCT 1 chr13:79163385-79163779 ( 8) TCAGCACCGCGGCCAGCTCCA 1 chr19:5404057-5404391 ( 60) TCAGTACCACGGACAGCGACA 1 chr1:11695894-11696261 ( 43) TCAGCACTGCGGACAGCGCCC 1 chr5:161495485-161495885 ( 49) TCAGCACCAGGGACAGCAGTC 1 chr10:61024905-61025283 ( 63) TCAGGACCATGGACAGTGACA 1 chr3:10636604-10636939 ( 32) TCAGGACCTTGGATAGCTCCA 1 chr6:146349183-146349911 ( 32) TCAGGACCCTGGACAGTGCTC 1 chr6:34100355-34100674 ( 31) TCAGCACCTCGGTCAGCGCCA 1 chr6:24127052-24127369 ( 26) TCAGAACCTTGGAGAGCTCCT 1 chr19:54431014-54431368 ( 11) TCAGGACCATGGACAGGTGCA 1 chr16:7063820-7064467 ( 52) TCAGCACCTTGGACAGTTCTT 1 chr9:34430770-34431129 ( 32) TCAGAACCCTGGAGAGCTCCT 1 chr22:37040282-37040629 ( 63) TCAGCACCTTGGAGAGCATCT 1 chr11:7098388-7098704 ( 33) GCAGGACCCTGGACAGCGCCG 1 chr5:94138185-94138542 ( 47) TCAGGACCAAGGACAGATCCT 1 chr20:47139683-47140160 ( 13) TCAGCACCTAGGACAGCTCAG 1 chr7:154106785-154107268 ( 6) TCAGGACCTTGGAGAGCGACT 1 chr19:36466527-36466898 ( 50) TCAGAACCATGGACAGCAGTT 1 chr1:30224984-30225365 ( 15) TCAGCACCGCGGAGAGCTCTG 1 chr16:23038133-23038472 ( 27) TCAGCACCGTGGACAGCAGAG 1 chr13:94342280-94343026 ( 22) CTAGGACCATGGACAGCTCCC 1 chr16:17877918-17878299 ( 60) TCAGCACCAAGGACAGCAAAA 1 chr10:26656786-26657117 ( 26) TCAGCACCAAGGACAGGGGCA 1 chr12:2861843-2862173 ( 44) CCAGGACCAGGGACAGCGCTC 1 chr9:132552745-132553062 ( 48) TCAGGACCAGAGACAGCGCCC 1 chr10:106584190-10658451 ( 72) CCAGCACCTGGGACAGCGCTC 1 chr2:207507386-207507742 ( 50) TCAGTACCTTGGACAGAGTCC 1 chr6:105335273-105335580 ( 38) TCAGGACCATGGACAGTAATG 1 chr7:154861581-154862290 ( 21) GCAGCACCGCGGACAGCCCCA 1 chr3:117041738-117042086 ( 45) TCAGCACCATGGATAGTAACA 1 chr6:88829451-88829907 ( 26) TTAGTACCAAGGACAGCGACA 1 chr19:50490316-50490974 ( 56) TCAGCACTAGGGACAGCAGGC 1 chr16:49191929-49192484 ( 8) ACAGAACCCTGGACAGTGCAC 1 chr8:10847647-10848192 ( 4) TTGTGACCATGGACAGCTCCC 1 chr8:62200374-62200949 ( 26) TCAGCAGCGAGGACACCTGCA 1 chr10:120355420-12035597 ( 14) TCAGGTCCGCGACCAGCTCCA 1 chr5:116199990-116200537 ( 54) ACAGGTCTTTGGAGAGCTCTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCAGSACCATGGACAGCDCCM MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 35520 bayes= 10.2772 E= 1.7e-332 -340 -220 -261 173 -1295 205 -1295 -282 188 -1295 -419 -1295 -1295 -1295 209 -440 -160 119 39 -182 186 -1295 -1295 -340 -1295 209 -419 -1295 -1295 205 -1295 -282 84 -61 -61 -32 -140 20 -187 109 -440 -1295 209 -1295 -440 -1295 209 -1295 179 -220 -1295 -340 -1295 185 -74 -340 190 -1295 -1295 -1295 -1295 -419 209 -1295 -240 185 -320 -160 -8 -419 50 60 -140 142 -50 -123 -182 166 -419 -60 24 85 -120 -70 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCAGSACCATGGACAGCDCCM MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 79 E= 1.7e-332 0.025316 0.050633 0.037975 0.886076 0.000000 0.962025 0.000000 0.037975 0.987342 0.000000 0.012658 0.000000 0.000000 0.000000 0.987342 0.012658 0.088608 0.531646 0.303797 0.075949 0.974684 0.000000 0.000000 0.025316 0.000000 0.987342 0.012658 0.000000 0.000000 0.962025 0.000000 0.037975 0.481013 0.151899 0.151899 0.215190 0.101266 0.265823 0.063291 0.569620 0.012658 0.000000 0.987342 0.000000 0.012658 0.000000 0.987342 0.000000 0.924051 0.050633 0.000000 0.025316 0.000000 0.835443 0.139241 0.025316 1.000000 0.000000 0.000000 0.000000 0.000000 0.012658 0.987342 0.000000 0.050633 0.835443 0.025316 0.088608 0.253165 0.012658 0.329114 0.405063 0.101266 0.620253 0.164557 0.113924 0.075949 0.734177 0.012658 0.177215 0.316456 0.417722 0.101266 0.164557 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCAGSACCATGGACAGCDCCM MEME-1 regular expression -------------------------------------------------------------------------------- TCAG[CG]ACC[AT][TC]GGACAGC[TGA]CC[CA] -------------------------------------------------------------------------------- Time 154.77 secs. ******************************************************************************** ******************************************************************************** MOTIF WMATTWRCATA MEME-2 width = 11 sites = 100 llr = 958 E-value = 2.8e-058 ******************************************************************************** -------------------------------------------------------------------------------- Motif WMATTWRCATA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 358::54:a:8 pos.-specific C 14::1::a::: probability G 111:::6:::1 matrix T 511a96:::a2 bits 2.1 * 1.9 * *** 1.7 * *** 1.5 ** *** Relative 1.3 ** *** Entropy 1.1 *** **** (13.8 bits) 0.8 ********* 0.6 ********* 0.4 ********** 0.2 *********** 0.0 ----------- Multilevel TAATTTGCATA consensus AC AA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WMATTWRCATA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------- chr9:10339050-10339465 + 72 3.84e-07 AAATCAGTCT TAATTTGCATA AAGGCTTTTT chr3:77328049-77328904 - 75 7.16e-07 TCATTGTGAG TCATTTGCATA ATGTTTCCCG chr12:9517117-9517450 + 55 7.16e-07 cccatcaggt tcatttgcata tgaacccaga chr20:37321040-37321557 - 5 7.16e-07 TGTTGTCTTT TCATTTGCATA CAGA chr3:164658699-164659601 + 26 1.10e-06 TCCTCAAAAG TAATTAGCATA CTAAACAAAA chr8:72928396-72928760 - 24 1.10e-06 TAATGTATTA TAATTAGCATA TAATGAGCAG chr14:67735183-67735649 + 27 1.10e-06 taacgcatta taattagcata tagtgagcag chr4:185114558-185115107 + 78 1.10e-06 ATATGGGATC TAATTAGCATA TGGAAATTAG chr7:26775613-26776211 - 89 1.10e-06 A TAATTAGCATA TAATGAGCAG chr5:120187802-120188406 + 22 1.10e-06 CTCTTGCCCA TAATTAGCATA AGCAAAGTCA chr11:63298741-63299362 - 66 1.43e-06 CCCTCACTGC TCATTAGCATA AGACACTCCC chr18:60544176-60545003 + 16 1.43e-06 TAGTGATAAT TCATTAGCATA GTGAAATAAA chr5:93209819-93210167 - 72 1.43e-06 CTAAGTCACC TCATTAGCATA AACTCAGTGA chr19:50143341-50143901 - 14 1.43e-06 CACAGGTCTC TCATTAGCATA GCCCCGCCTC chr9:120031206-120031905 + 73 1.43e-06 TATGGCAGCA TCATTAGCATA ACAGGTGCCT chr15:80681679-80682071 - 8 1.88e-06 AATTATTCAA TAATTTACATA TACAGAG chr11:88034210-88034889 + 11 2.26e-06 tccaccctct tcatttacata aggcatacac chr4:27892317-27892666 + 24 3.09e-06 tctgctgcat aaatttgcata aataaagagg chr8:74218824-74219638 + 26 3.09e-06 CCTTAAGTTG TAATTAACATA CTGCCCCCTA chr8:71291932-71292645 + 45 3.09e-06 CAAACATGAG TAATTAACATA CAGCTTAAGC chr7:7937057-7937830 - 29 3.09e-06 TACATGGAGC TAATTAACATA TGTATTACCT chr17:19364312-19364721 + 19 3.09e-06 tttgctagag aaatttgcata actgaaaggg chr7:14024610-14025305 + 75 3.80e-06 AGTCTTACCT TCATTAACATA TAAATACAAT chr4:136304858-136305559 - 62 3.80e-06 ATTAGCCTTC TCATTAACATA AGAACGAACA chr6:62737195-62737592 - 70 3.80e-06 AAAAGTCACC TCATTAACATA AACTCAGGTG chr10:20546291-20546874 + 59 3.80e-06 AAAGAACTAC TCATTAACATA ACAATGATTT chrX:50357311-50357997 + 27 4.19e-06 gtgggagttg aaattagcata actcctaggg chr3:104265962-104266345 + 88 4.19e-06 TTTCCTTTAA AAATTAGCATA TT chr6:129275817-129276225 - 61 5.30e-06 AACACTGCTG AAATTTACATA TATATGGGGA chr11:43975881-43976206 + 37 6.35e-06 accaggtgtg ccatttgcata gagcgagaaa chr10:13442564-13442920 + 16 6.35e-06 accaggtgtg acatttacata gcacaggaag chr2:8820859-8821537 - 74 6.35e-06 TATTGAAACT ACATTTACATA CACTGCCCTT chr6:139298892-139299365 + 28 6.35e-06 cactgtgatt taatttgcatt tccctaatga chr17:49990323-49990716 + 90 6.35e-06 AGCCTCTAAG ACATTTACATA chr9:128456531-128457206 - 12 6.35e-06 GTAGTGTTTG TAATTTGCATT ATGCATACTT chr1:230563708-230564140 + 21 6.35e-06 CCGGTGTCCC TAATTTGCATT TGTATGGTGC chr7:76302666-76303107 + 24 6.35e-06 actaggtgtg ccatttgcata tggcgcaaaa chr3:21683397-21683795 - 52 6.35e-06 GCTAGGTGTG CCATTTGCATA GGGTGTGAAA chr2:190983922-190984331 + 10 7.79e-06 ggcggtgtc tgatttgcata gggctcaggg chr1:45917895-45918227 + 22 7.79e-06 TCTAGAAGCC AAATTAACATA ATAATGACTT chr18:47088177-47088530 - 51 7.79e-06 CGCCAGATGG TGATTTGCATA ATTTATTCCC chr4:189029220-189029687 + 70 7.79e-06 ggagcactca aaattaacata tctaaagccg chr3:31183530-31183958 - 23 9.23e-06 TTTTTGGTTT ACATTAACATA TGAAAGGGGG chr18:60499561-60499889 + 49 9.23e-06 GATCCGGTTA TAATTAGCATT TTCATTCAGT chr13:53422688-53423033 - 4 9.89e-06 CCGGCTCGGG TGATTAGCATA TCG chr5:54920928-54921285 + 34 9.89e-06 atccacccct tgattagcata tcaccaagaa chr3:78396319-78396741 + 69 1.07e-05 CAAAATGTTG CAATTTACATA TTAATGAAGT chr12:131432640-13143323 - 27 1.18e-05 ACCAGATATG CCATTTACATA GCCCGGAAGA chr3:115978762-115979156 + 36 1.32e-05 GCTAAATCTT TCATTTACATT CAGAAGATGG chr16:16064876-16065350 - 63 1.32e-05 ATGGTACCCT GCATTTGCATA TTAAAAGGCT chr10:52378861-52379456 - 82 1.32e-05 TTTGTTTT TGATTTACATA AGTGGTTCTG chr12:77266118-77266606 + 52 1.32e-05 atggcgccct gcatttgcata ctaaaaagct chr1:178235692-178236237 - 50 1.32e-05 ATGGCACTCT GCATTTGCATA TTAAAAGGCT chr3:104238661-104239265 + 86 1.55e-05 tCTTTCCTTG aaatttgcatt taaa chr5:71358881-71359380 - 52 1.55e-05 TCTAAAATAA CCATTAACATA TTTATTACAG chr6:88829451-88829907 - 77 1.55e-05 CAAATGTTCC TAGTTTGCATA AGAAAAAAAA chr11:69336331-69336688 - 11 2.03e-05 TTTGCTAGAG ATATTTGCATA ACTAAAAGGA chr21:17131791-17132146 - 44 2.03e-05 CTTGGAGGCT TCATTTGCATG ATAAAACCTA chr8:103395185-103395890 + 5 2.03e-05 aagg aaattagcatt agttaaaccc chr2:204598883-204599421 - 35 2.27e-05 TGATCTTCTT ACATTAGCATT TGCTTAACAA chr4:163084977-163085576 + 15 2.27e-05 CTGACGTAAC TATTTTGCATA TCAACTCGCC chr9:136324629-136325236 - 21 2.27e-05 GGTGGGGAGC TCGTTAGCATA CGGGGCGGGG chr1:33896608-33896919 + 8 2.43e-05 TTACCAT ATATTAGCATA CCAGCGCGCG chr1:183603211-183604095 + 77 2.93e-05 TTTTTTTGCA ACATTTACATT TTTCTAAAAA chr1:154159803-154160120 - 84 3.26e-05 TTCTTC ATATTTACATA GGAATCCACC chr11:76653225-76653711 + 81 3.26e-05 ttttatgtga tgatttgcatt tattgattt chr2:162225781-162226214 - 83 3.26e-05 AAGAAAC TAGTTAACATA AGCACTTCCT chr7:136084181-136084578 - 87 3.26e-05 AAC CTATTTGCATA TCTATCTGAA chr7:25901756-25902479 - 39 3.26e-05 TCGCGGTTTC TCATTTACATG CAGCCACACT chr7:70322682-70323139 - 62 3.26e-05 GAGGGAGACT TCATCTACATA ACAAGGCCAC chr18:9574678-9575103 + 80 3.68e-05 AACGAATGCT TATTTTACATA CTTTTAAAAT chrX:150645144-150645489 - 56 3.68e-05 GGCAGAGCAC TAATCAACATA TGCACATAAT chr1:99603171-99603492 + 75 3.68e-05 taaccaattt aaatctgcata acaaacctta chr9:80190774-80191231 + 25 3.99e-05 ATTGTTTATA ATATTAACATA TAAAATCTTC chr12:28613125-28614054 - 6 3.99e-05 ATACCACCTA ACATTTGCATG ATAGT chr9:1995039-1995595 - 74 3.99e-05 GAGGACCTGC ATATTAACATA AGTGATGCAA chr10:73104320-73104733 + 62 4.24e-05 CTAGCTGGGC AAATTAGCATG TCCATAGACC chr1:59170016-59170694 - 22 4.24e-05 GATGAGCTAT CAATTTACATT GCCAGGGTGA chr19:13763594-13763989 - 54 5.18e-05 ACTACGGGTG CCGTTTGCATA GTGCACAAAG chr7:110584946-110585436 - 32 5.18e-05 GCCATACCTA TAGTTTGCATT TTCTTGGCAG chr20:1986514-1987323 + 69 5.18e-05 Tttatgctgt gtatttgcata tgttatctaa chr20:10332948-10333303 + 34 5.63e-05 gtagattatt cagttagcata tctggttgca chr7:53394325-53394746 + 41 5.63e-05 ctatggagtt acatctacata acaagatcgc chr1:11905619-11906123 + 77 5.63e-05 ACTTTATCTA CAGTTAGCATA AGATGTGAGA chr1:30446942-30447549 - 75 7.02e-05 TTGCACTCAT TGTTTTGCATA CAAGACAATG chr7:35054967-35055396 + 8 7.02e-05 agcatga cagtttacata tgccatagca chr5:95806980-95807322 + 43 7.47e-05 GTGATCAGAG GAGTTTGCATA ACATGAATTG chr2:154720402-154720912 - 52 7.47e-05 CTATGTACGC TATTTAGCATT CATTGACAGA chr8:97855833-97856220 - 13 8.52e-05 GTTAGTCACC TCATCTACATT ATTATTCAAT chr19:54974936-54975736 + 55 8.52e-05 CCTTCTCAAG TGATTTACATG TGTCCCGCCC chr1:6112407-6113306 + 57 8.52e-05 aacgcgtaac tttttagcata aatacgttcc chr11:69453708-69454080 - 60 9.20e-05 GAGGAAACTG GAATTAGCATG AGCCAATGGG chr2:69677849-69678439 - 57 9.20e-05 GATAAGCTTG TAATCAACATT ATCAGTGTGG chr2:24270229-24270558 - 48 9.20e-05 AACCCTCTGC TAATGTGCATA TTCAAAAGCC chr16:8076294-8076837 - 73 1.04e-04 GCTCGCACAT GATTTAGCATA TATGTTGTAG chr16:7063820-7064467 - 31 1.10e-04 TTTGAGCATT TATTCTGCATA CACAATTGCC chr5:159593226-159593842 - 88 1.10e-04 AC AGATTAGCATG AGAAGAGACG chr14:34420329-34420853 - 27 1.15e-04 GCAGTTAATT CTATTTACATT TTCAGTGTGG chr7:138867140-138867486 - 62 1.22e-04 GTTAACTACT AAATCTACATT GCTAATCTTG chr20:6745286-6745717 - 90 1.36e-04 . AAATCAACATT AAAATAGTGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WMATTWRCATA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr9:10339050-10339465 3.8e-07 71_[+2]_18 chr3:77328049-77328904 7.2e-07 74_[-2]_15 chr12:9517117-9517450 7.2e-07 54_[+2]_35 chr20:37321040-37321557 7.2e-07 4_[-2]_85 chr3:164658699-164659601 1.1e-06 25_[+2]_64 chr8:72928396-72928760 1.1e-06 23_[-2]_66 chr14:67735183-67735649 1.1e-06 26_[+2]_63 chr4:185114558-185115107 1.1e-06 77_[+2]_12 chr7:26775613-26776211 1.1e-06 88_[-2]_1 chr5:120187802-120188406 1.1e-06 21_[+2]_68 chr11:63298741-63299362 1.4e-06 65_[-2]_24 chr18:60544176-60545003 1.4e-06 15_[+2]_74 chr5:93209819-93210167 1.4e-06 71_[-2]_18 chr19:50143341-50143901 1.4e-06 13_[-2]_76 chr9:120031206-120031905 1.4e-06 72_[+2]_17 chr15:80681679-80682071 1.9e-06 7_[-2]_82 chr11:88034210-88034889 2.3e-06 10_[+2]_79 chr4:27892317-27892666 3.1e-06 23_[+2]_66 chr8:74218824-74219638 3.1e-06 25_[+2]_64 chr8:71291932-71292645 3.1e-06 44_[+2]_45 chr7:7937057-7937830 3.1e-06 28_[-2]_61 chr17:19364312-19364721 3.1e-06 18_[+2]_71 chr7:14024610-14025305 3.8e-06 74_[+2]_15 chr4:136304858-136305559 3.8e-06 61_[-2]_28 chr6:62737195-62737592 3.8e-06 69_[-2]_20 chr10:20546291-20546874 3.8e-06 58_[+2]_31 chrX:50357311-50357997 4.2e-06 26_[+2]_63 chr3:104265962-104266345 4.2e-06 87_[+2]_2 chr6:129275817-129276225 5.3e-06 60_[-2]_29 chr11:43975881-43976206 6.4e-06 36_[+2]_53 chr10:13442564-13442920 6.4e-06 15_[+2]_74 chr2:8820859-8821537 6.4e-06 73_[-2]_16 chr6:139298892-139299365 6.4e-06 27_[+2]_62 chr17:49990323-49990716 6.4e-06 89_[+2] chr9:128456531-128457206 6.4e-06 11_[-2]_78 chr1:230563708-230564140 6.4e-06 20_[+2]_69 chr7:76302666-76303107 6.4e-06 23_[+2]_66 chr3:21683397-21683795 6.4e-06 51_[-2]_38 chr2:190983922-190984331 7.8e-06 9_[+2]_80 chr1:45917895-45918227 7.8e-06 21_[+2]_68 chr18:47088177-47088530 7.8e-06 50_[-2]_39 chr4:189029220-189029687 7.8e-06 69_[+2]_20 chr3:31183530-31183958 9.2e-06 22_[-2]_67 chr18:60499561-60499889 9.2e-06 48_[+2]_41 chr13:53422688-53423033 9.9e-06 3_[-2]_86 chr5:54920928-54921285 9.9e-06 33_[+2]_56 chr3:78396319-78396741 1.1e-05 68_[+2]_21 chr12:131432640-13143323 1.2e-05 26_[-2]_63 chr3:115978762-115979156 1.3e-05 35_[+2]_54 chr16:16064876-16065350 1.3e-05 62_[-2]_27 chr10:52378861-52379456 1.3e-05 81_[-2]_8 chr12:77266118-77266606 1.3e-05 51_[+2]_38 chr1:178235692-178236237 1.3e-05 49_[-2]_40 chr3:104238661-104239265 1.5e-05 85_[+2]_4 chr5:71358881-71359380 1.5e-05 51_[-2]_38 chr6:88829451-88829907 1.5e-05 76_[-2]_13 chr11:69336331-69336688 2e-05 10_[-2]_79 chr21:17131791-17132146 2e-05 43_[-2]_46 chr8:103395185-103395890 2e-05 4_[+2]_85 chr2:204598883-204599421 2.3e-05 34_[-2]_55 chr4:163084977-163085576 2.3e-05 14_[+2]_75 chr9:136324629-136325236 2.3e-05 20_[-2]_69 chr1:33896608-33896919 2.4e-05 7_[+2]_82 chr1:183603211-183604095 2.9e-05 76_[+2]_13 chr1:154159803-154160120 3.3e-05 83_[-2]_6 chr11:76653225-76653711 3.3e-05 80_[+2]_9 chr2:162225781-162226214 3.3e-05 82_[-2]_7 chr7:136084181-136084578 3.3e-05 86_[-2]_3 chr7:25901756-25902479 3.3e-05 38_[-2]_51 chr7:70322682-70323139 3.3e-05 61_[-2]_28 chr18:9574678-9575103 3.7e-05 79_[+2]_10 chrX:150645144-150645489 3.7e-05 55_[-2]_34 chr1:99603171-99603492 3.7e-05 74_[+2]_15 chr9:80190774-80191231 4e-05 24_[+2]_65 chr12:28613125-28614054 4e-05 5_[-2]_84 chr9:1995039-1995595 4e-05 73_[-2]_16 chr10:73104320-73104733 4.2e-05 61_[+2]_28 chr1:59170016-59170694 4.2e-05 21_[-2]_68 chr19:13763594-13763989 5.2e-05 53_[-2]_36 chr7:110584946-110585436 5.2e-05 31_[-2]_58 chr20:1986514-1987323 5.2e-05 68_[+2]_21 chr20:10332948-10333303 5.6e-05 33_[+2]_56 chr7:53394325-53394746 5.6e-05 40_[+2]_49 chr1:11905619-11906123 5.6e-05 76_[+2]_13 chr1:30446942-30447549 7e-05 74_[-2]_15 chr7:35054967-35055396 7e-05 7_[+2]_82 chr5:95806980-95807322 7.5e-05 42_[+2]_47 chr2:154720402-154720912 7.5e-05 51_[-2]_38 chr8:97855833-97856220 8.5e-05 12_[-2]_77 chr19:54974936-54975736 8.5e-05 54_[+2]_35 chr1:6112407-6113306 8.5e-05 56_[+2]_33 chr11:69453708-69454080 9.2e-05 59_[-2]_30 chr2:69677849-69678439 9.2e-05 56_[-2]_33 chr2:24270229-24270558 9.2e-05 47_[-2]_42 chr16:8076294-8076837 0.0001 72_[-2]_17 chr16:7063820-7064467 0.00011 30_[-2]_59 chr5:159593226-159593842 0.00011 87_[-2]_2 chr14:34420329-34420853 0.00012 26_[-2]_63 chr7:138867140-138867486 0.00012 61_[-2]_28 chr20:6745286-6745717 0.00014 89_[-2] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WMATTWRCATA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WMATTWRCATA width=11 seqs=100 chr9:10339050-10339465 ( 72) TAATTTGCATA 1 chr3:77328049-77328904 ( 75) TCATTTGCATA 1 chr12:9517117-9517450 ( 55) TCATTTGCATA 1 chr20:37321040-37321557 ( 5) TCATTTGCATA 1 chr3:164658699-164659601 ( 26) TAATTAGCATA 1 chr8:72928396-72928760 ( 24) TAATTAGCATA 1 chr14:67735183-67735649 ( 27) TAATTAGCATA 1 chr4:185114558-185115107 ( 78) TAATTAGCATA 1 chr7:26775613-26776211 ( 89) TAATTAGCATA 1 chr5:120187802-120188406 ( 22) TAATTAGCATA 1 chr11:63298741-63299362 ( 66) TCATTAGCATA 1 chr18:60544176-60545003 ( 16) TCATTAGCATA 1 chr5:93209819-93210167 ( 72) TCATTAGCATA 1 chr19:50143341-50143901 ( 14) TCATTAGCATA 1 chr9:120031206-120031905 ( 73) TCATTAGCATA 1 chr15:80681679-80682071 ( 8) TAATTTACATA 1 chr11:88034210-88034889 ( 11) TCATTTACATA 1 chr4:27892317-27892666 ( 24) AAATTTGCATA 1 chr8:74218824-74219638 ( 26) TAATTAACATA 1 chr8:71291932-71292645 ( 45) TAATTAACATA 1 chr7:7937057-7937830 ( 29) TAATTAACATA 1 chr17:19364312-19364721 ( 19) AAATTTGCATA 1 chr7:14024610-14025305 ( 75) TCATTAACATA 1 chr4:136304858-136305559 ( 62) TCATTAACATA 1 chr6:62737195-62737592 ( 70) TCATTAACATA 1 chr10:20546291-20546874 ( 59) TCATTAACATA 1 chrX:50357311-50357997 ( 27) AAATTAGCATA 1 chr3:104265962-104266345 ( 88) AAATTAGCATA 1 chr6:129275817-129276225 ( 61) AAATTTACATA 1 chr11:43975881-43976206 ( 37) CCATTTGCATA 1 chr10:13442564-13442920 ( 16) ACATTTACATA 1 chr2:8820859-8821537 ( 74) ACATTTACATA 1 chr6:139298892-139299365 ( 28) TAATTTGCATT 1 chr17:49990323-49990716 ( 90) ACATTTACATA 1 chr9:128456531-128457206 ( 12) TAATTTGCATT 1 chr1:230563708-230564140 ( 21) TAATTTGCATT 1 chr7:76302666-76303107 ( 24) CCATTTGCATA 1 chr3:21683397-21683795 ( 52) CCATTTGCATA 1 chr2:190983922-190984331 ( 10) TGATTTGCATA 1 chr1:45917895-45918227 ( 22) AAATTAACATA 1 chr18:47088177-47088530 ( 51) TGATTTGCATA 1 chr4:189029220-189029687 ( 70) AAATTAACATA 1 chr3:31183530-31183958 ( 23) ACATTAACATA 1 chr18:60499561-60499889 ( 49) TAATTAGCATT 1 chr13:53422688-53423033 ( 4) TGATTAGCATA 1 chr5:54920928-54921285 ( 34) TGATTAGCATA 1 chr3:78396319-78396741 ( 69) CAATTTACATA 1 chr12:131432640-13143323 ( 27) CCATTTACATA 1 chr3:115978762-115979156 ( 36) TCATTTACATT 1 chr16:16064876-16065350 ( 63) GCATTTGCATA 1 chr10:52378861-52379456 ( 82) TGATTTACATA 1 chr12:77266118-77266606 ( 52) GCATTTGCATA 1 chr1:178235692-178236237 ( 50) GCATTTGCATA 1 chr3:104238661-104239265 ( 86) AAATTTGCATT 1 chr5:71358881-71359380 ( 52) CCATTAACATA 1 chr6:88829451-88829907 ( 77) TAGTTTGCATA 1 chr11:69336331-69336688 ( 11) ATATTTGCATA 1 chr21:17131791-17132146 ( 44) TCATTTGCATG 1 chr8:103395185-103395890 ( 5) AAATTAGCATT 1 chr2:204598883-204599421 ( 35) ACATTAGCATT 1 chr4:163084977-163085576 ( 15) TATTTTGCATA 1 chr9:136324629-136325236 ( 21) TCGTTAGCATA 1 chr1:33896608-33896919 ( 8) ATATTAGCATA 1 chr1:183603211-183604095 ( 77) ACATTTACATT 1 chr1:154159803-154160120 ( 84) ATATTTACATA 1 chr11:76653225-76653711 ( 81) TGATTTGCATT 1 chr2:162225781-162226214 ( 83) TAGTTAACATA 1 chr7:136084181-136084578 ( 87) CTATTTGCATA 1 chr7:25901756-25902479 ( 39) TCATTTACATG 1 chr7:70322682-70323139 ( 62) TCATCTACATA 1 chr18:9574678-9575103 ( 80) TATTTTACATA 1 chrX:150645144-150645489 ( 56) TAATCAACATA 1 chr1:99603171-99603492 ( 75) AAATCTGCATA 1 chr9:80190774-80191231 ( 25) ATATTAACATA 1 chr12:28613125-28614054 ( 6) ACATTTGCATG 1 chr9:1995039-1995595 ( 74) ATATTAACATA 1 chr10:73104320-73104733 ( 62) AAATTAGCATG 1 chr1:59170016-59170694 ( 22) CAATTTACATT 1 chr19:13763594-13763989 ( 54) CCGTTTGCATA 1 chr7:110584946-110585436 ( 32) TAGTTTGCATT 1 chr20:1986514-1987323 ( 69) GTATTTGCATA 1 chr20:10332948-10333303 ( 34) CAGTTAGCATA 1 chr7:53394325-53394746 ( 41) ACATCTACATA 1 chr1:11905619-11906123 ( 77) CAGTTAGCATA 1 chr1:30446942-30447549 ( 75) TGTTTTGCATA 1 chr7:35054967-35055396 ( 8) CAGTTTACATA 1 chr5:95806980-95807322 ( 43) GAGTTTGCATA 1 chr2:154720402-154720912 ( 52) TATTTAGCATT 1 chr8:97855833-97856220 ( 13) TCATCTACATT 1 chr19:54974936-54975736 ( 55) TGATTTACATG 1 chr1:6112407-6113306 ( 57) TTTTTAGCATA 1 chr11:69453708-69454080 ( 60) GAATTAGCATG 1 chr2:69677849-69678439 ( 57) TAATCAACATT 1 chr2:24270229-24270558 ( 48) TAATGTGCATA 1 chr16:8076294-8076837 ( 73) GATTTAGCATA 1 chr16:7063820-7064467 ( 31) TATTCTGCATA 1 chr5:159593226-159593842 ( 88) AGATTAGCATG 1 chr14:34420329-34420853 ( 27) CTATTTACATT 1 chr7:138867140-138867486 ( 62) AAATCTACATT 1 chr20:6745286-6745717 ( 90) AAATCAACATT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WMATTWRCATA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 11 n= 39960 bayes= 10.2495 E= 2.8e-058 1 -84 -173 98 78 63 -137 -157 165 -1329 -137 -194 -1329 -1329 -1329 190 -1329 -137 -453 175 75 -1329 -1329 104 54 -1329 139 -1329 -1329 211 -1329 -1329 190 -1329 -1329 -1329 -1329 -1329 -1329 190 149 -1329 -173 -57 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WMATTWRCATA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 11 nsites= 100 E= 2.8e-058 0.270000 0.130000 0.070000 0.530000 0.460000 0.360000 0.090000 0.090000 0.840000 0.000000 0.090000 0.070000 0.000000 0.000000 0.000000 1.000000 0.000000 0.090000 0.010000 0.900000 0.450000 0.000000 0.000000 0.550000 0.390000 0.000000 0.610000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.750000 0.000000 0.070000 0.180000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WMATTWRCATA MEME-2 regular expression -------------------------------------------------------------------------------- [TA][AC]ATT[TA][GA]CATA -------------------------------------------------------------------------------- Time 306.08 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGMGGGRSCNGSGSSVGVGGSGSVGGVG MEME-3 width = 29 sites = 64 llr = 765 E-value = 5.4e-040 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGMGGGRSCNGSGSSVGVGGSGSVGGVG MEME-3 Description -------------------------------------------------------------------------------- Simplified A 1::322231121:2122:2::22:22:3: pos.-specific C 3:352:1236323:323143331441222 probability G 686:6765513667543846857535746 matrix T 111211:::22111:2121::11:12:12 bits 2.1 1.9 1.7 1.5 Relative 1.3 * * Entropy 1.1 * * * * * * (17.2 bits) 0.8 ** * * * * * 0.6 ** ** * **** * ** ** * * 0.4 ********** **** * ** ** ** * 0.2 ********** ****************** 0.0 ----------------------------- Multilevel GGGCGGGGGCGGGGGGGGCGGGGGCGGGG consensus C CA AAC CCCACCC GCCC CG CAC sequence A A A CT T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGMGGGRSCNGSGSSVGVGGSGSVGGVG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chr1:2457609-2458825 + 48 2.72e-10 GGGTCCGAGA GGCCCGGGGCTGCGGGCGGGCGGGCGGTT ATCCTCCAGA chr7:25901756-25902479 - 59 5.27e-10 GTGGGAAATT GGGCGGAGCCGGGGGCGGGGGGAGATGCT CGCGGTTTCT chr5:175298363-175299076 + 49 2.48e-09 GGTCGGTGCT GGCCGAGGGCCGGGAGGGCGGAGCTGGGC TGTGGGCAAC chr10:61024905-61025283 + 24 3.33e-09 CAGAGGGATA GGGAAGGGGTTTTGGCGGGGGGGGGGGGG AATCCTGGTT chr11:122852514-12285283 + 14 3.86e-09 AGAGGCAGAG GGGAGGGTGCGGGAGGCTCGGGGCGGGGC GGGGAGCTGT chr12:11653361-11653881 - 2 3.86e-09 TAAGGAATCC GGGCGGAGGCTGCGCTTGCGGCAGCTGCG G chr16:24266985-24267547 + 25 5.14e-09 TGGCTGACCC GGGAAGGAACGGGGGAAGGGCGGGGTGAG GGAAGAAAGA chr20:61747601-61748172 + 13 7.84e-09 TGAGCACAGC TGCAGGGAGCTGCGCGGGGGGAGCCGCAG AGCTGGGCAC chr9:136324629-136325236 - 47 1.03e-08 TTATTGTAGG GGGCGGGACCCGCAGGCTGCGGCGAGGAG CTGGGGGTGG chr13:53422688-53423033 - 37 1.18e-08 TGTCAGAGGC AGGCGGAGGGGCGACGCGAGGGGGAGGCG GCCATTGGCT chr2:220172782-220173837 - 5 1.36e-08 CACGGACAGG GGGTGGGGGATGGGAGGGTGGCGCGTGGG GGAA chr20:10199717-10200712 + 15 2.99e-08 AACTGCAGGC TGGCGGGAGGCGGGCGGGTCGTGCCGGGT GGGAGGGCTC chr8:41753441-41754039 - 71 8.10e-08 C GGTGGGGCGCGGCGCCCGGTGCGGCGGAG TTGGCGGCAC chr22:27247840-27248548 - 71 8.10e-08 A AGCAGGGAGGAGGAGGAGAGGGGGGAGAG AGAGAGAGAG chrX:199983-200541 + 40 9.13e-08 GCCCGGGTGG GGGCGGCCGTGGTGCCAGGCCCGGGTGGG GGCGGCCGTG chr1:37720800-37721430 + 60 1.03e-07 AGCCATTTTC GGGCGAAGCCAGGGGCCCACGTGGGAGGG AGCTCCAGGA chr3:9593865-9594448 - 38 1.16e-07 TCTTCCACTA CTGCGTGGGCAGCGGGCTGGCGGGCCGCG AGCTCACCTG chr1:230562137-230562630 + 55 1.30e-07 TGCTTCCAGC GGTCCGGGCCCGCGGACGGAGTGCGGGCC GATCCCGCTC chr6:114661920-114662769 + 40 1.30e-07 aggggaggga gggagggagagggagagggagagggagag ggagagggaa chr16:89992506-89993092 + 2 1.46e-07 C CTGCGGAGCCGCGGGCCGGGCGGGAACCG CATTCGGGTC chr10:120355420-12035597 - 49 1.46e-07 GCTGCAGCCA AGCAGGGGGCTCGTGTGGCGGGGCCACGG GAGGGTGAGG chr19:7627504-7628420 - 47 1.46e-07 CTCAGAGATC TGGAGGGCGCAGGGATATCGGCGGGGGTG GGGGGGCTTG chr20:44657848-44658386 + 72 1.85e-07 AGAGGAGGCT GGGACTGACCCGGGCGGTGGGCGCCAGTT chr10:35931076-35931461 - 57 2.07e-07 TCCGCCCTAC CGCCCGGCGATTGGCTCGCGGGGCTGGGG GCGGAGACCG chr1:22952670-22953434 + 45 2.07e-07 AATCAGCAGA GGGCTGGGAGAGGGGGGTGCGGACAGGGC AGTGGCAGCT chr9:140778845-140779360 + 65 2.07e-07 tgaatTGTTG GGGTGTAAGCAGTGCTGGGGGGTGCGGGC CAGCGGG chr22:39638906-39639791 + 70 2.59e-07 CTCTGGGGCC GGGCATGCCCTGCGCGTGCCGGAGGGCGT CC chr20:44660334-44660912 - 7 2.90e-07 CCTCCCTGAA CGCCAGGCGCACTGGTTGAGGGGGATGGG GAATGA chr12:2861843-2862173 + 15 2.90e-07 AGCGGCGTCT GCTCGGGCGCGGGGTGTGGCGCGGCGGGT GAGCGCTGTC chr12:113917788-11391846 + 15 3.61e-07 GGTGCTGAAT CGGCGGCGCCGTCGCCGGAGCAAGGGGGC TTCTGTAACC chr19:15125219-15125741 + 61 4.03e-07 gggagaagaa gggacaggctgggggacgagggtgtggac gaggcaggag chr20:30556178-30556801 - 38 4.03e-07 CCAGATGCAG AGGCGGCAGCAGCGGCGGCGGTAGGCGCT GGCCGAGGAG chr17:72667320-72667986 - 2 4.03e-07 CGGCAGGCTT GGGTCTGAGCTCTGCGGGCCGGGCCGCAT C chr18:44786508-44787108 + 33 4.49e-07 CCAGTGGTTG GGCCGGAGACGGGGCTAGGGGTGCACCCT TCGTCCCGGT chr8:50824108-50824594 - 14 5.00e-07 ACGACAGTGG CGGCAAGGACAGCGGCGGCGGCAGCGTAG TTCCGTCCCT chr20:48099185-48099681 + 2 5.00e-07 G GGGCCGCCCCTCGGGGCGGGGAGAGGGCC CCAAGAGATG chr2:98962812-98963308 + 26 9.38e-07 GGAATTTTTT GGGGGGCGCCGGGAGGTGTGCTGGGGCCG CAGACCCCAT chr18:35144742-35145403 - 44 1.27e-06 AACGATGCCA TGGAGAGAGCAGCGGGCGCCGATGAAGAG AAAGAGAGAG chr6:146349183-146349911 + 56 1.55e-06 GTCCTGAAGG CGGCAGGGCTCAGGCTGCCGCGGCGAGAG CAACCCGGAA chr12:113229180-11322983 - 72 1.71e-06 . CTGTGTGAGCAAGGGAAGCGGGGCGGCAG CTTCCCAGTG chr18:47087772-47088127 - 70 2.08e-06 CC GGGAGTCCGTCGGGGGAGAGCCACCTGGT CATCCCCTTT chr5:175223517-175224504 - 44 3.67e-06 GTGCTGACCC GATAGGGACCCGGTGCGGCGCGGGAGCTG TCCCCGAGAT chr19:50143341-50143901 - 39 4.41e-06 ACCGCCCTCC CGCTGAGAGCGCGTGGCGCCGCTCAGGGC AAAGCACAGG chr12:57634738-57635182 + 34 4.83e-06 TGACAGGAGG CGCCTGGGGCTGTGGACTAGGAGGCCCGT GCACCAGGGC chr19:15126748-15127143 + 25 4.83e-06 GACAGGCTGA GGGTCGAGGGTGTGGACGAGGTAGGAGAC TCAGGGACTG chr12:119060119-11906068 - 37 5.28e-06 AGGGCAGGTG GGTAGTGGCCCAGAGTGTGGGAGGCTGAT ATGGGAAATG chr9:138863784-138864405 - 64 5.28e-06 GAGTGTTG GTGAAGGGCCCTGGCGTGTCCGGGGAGTG TTGGTGAGAC chr19:39902844-39903644 - 64 5.28e-06 GATCCCAG CTGTGAGGCGGGGGGCGGTCGCCCGGGGC TTCCCCTCCC chr11:66175933-66176508 + 5 5.78e-06 GGGA GAGCGGAGACCGGGTAAGGGGGGCCTTGG GAGCCAGGGA chr15:51973347-51973904 - 11 7.53e-06 GCTCCATGCA CGCCAGAGGCGGGAGGGGATGGCGTCGGT GACTCCAACG chr20:44685926-44686458 - 62 8.21e-06 GGAGTAGATG GTGATGACCTCGCGGCCGCCGCCGCGGAC CAGCATCACC chr19:47940644-47941142 + 40 1.16e-05 CTCCATGTTG GGTCCTGGGTCGGGGGCTCACAGCCTGTG CCCAGGGGTC chr19:46455809-46456826 - 47 1.16e-05 CCCGGAAGTG CGTAAGGGAACGGAAACGCGGGGCTGGCT CCCGTTTTCT chr9:138048360-138048718 + 38 1.36e-05 AACGCCCAGA GGCCAGAAGTCCGAGAGCCCGCGCCTCAG TGGGATCTGT chr19:18343565-18345057 - 27 1.89e-05 AGCGCTATAG GGGACGGCAGACGGTTTTCGGGGCTGGTG TGTTGGGGGG chr1:33896608-33896919 - 19 2.05e-05 GGTGACCATT GGCTGGAGCGGCCACGTGACGCGCGCTGG TATGCTAATA chr5:151303906-151304733 + 11 2.40e-05 GCGAGGGGGT CGTAGATACCACGGACAGCGGCGGCTGCG AGGCGTTTCA chr6:25652246-25652797 - 5 2.81e-05 GAGTAACTGT TGCTGGGGAGGACGCGAGCGCTGCTGGCC GTGG chr7:154861581-154862290 + 43 3.03e-05 ACAGCCCCAA AGCCGCGCGCTCTGAGCCAGGAGGCGGGG AGAGATGGCC chr11:69453708-69454080 - 20 3.53e-05 GCCAATGGGG GCGCGGCGCTGTTACTAGGCGGACCGGGC AGATCTCGAC chr4:8581990-8582926 + 56 4.76e-05 GACAGCACCG CGGTTGCGCTGCCTCCAGGGCGGCCCCGG GCTGCTCCTG chr20:37507466-37507779 - 69 5.92e-05 GCC CGCCTAAACACGCACTGGCCGTCCGGGAG CTCTCCAAGG chr3:48698951-48699864 - 35 5.92e-05 GCAAGGGTCA GGGCGAGAGAGCCACGACATCCGGAGCAG AAAGGACAGC chr11:61334449-61335293 - 24 6.36e-05 TTCAGCACCA AGGACAAGGAGCCGCGTGGCCGACAGCTG TTTCAGCACC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGMGGGRSCNGSGSSVGVGGSGSVGGVG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:2457609-2458825 2.7e-10 47_[+3]_24 chr7:25901756-25902479 5.3e-10 58_[-3]_13 chr5:175298363-175299076 2.5e-09 48_[+3]_23 chr10:61024905-61025283 3.3e-09 23_[+3]_48 chr11:122852514-12285283 3.9e-09 13_[+3]_58 chr12:11653361-11653881 3.9e-09 1_[-3]_70 chr16:24266985-24267547 5.1e-09 24_[+3]_47 chr20:61747601-61748172 7.8e-09 12_[+3]_59 chr9:136324629-136325236 1e-08 46_[-3]_25 chr13:53422688-53423033 1.2e-08 36_[-3]_35 chr2:220172782-220173837 1.4e-08 4_[-3]_67 chr20:10199717-10200712 3e-08 14_[+3]_57 chr8:41753441-41754039 8.1e-08 70_[-3]_1 chr22:27247840-27248548 8.1e-08 70_[-3]_1 chrX:199983-200541 9.1e-08 39_[+3]_32 chr1:37720800-37721430 1e-07 59_[+3]_12 chr3:9593865-9594448 1.2e-07 37_[-3]_34 chr1:230562137-230562630 1.3e-07 54_[+3]_17 chr6:114661920-114662769 1.3e-07 39_[+3]_32 chr16:89992506-89993092 1.5e-07 1_[+3]_70 chr10:120355420-12035597 1.5e-07 48_[-3]_23 chr19:7627504-7628420 1.5e-07 46_[-3]_25 chr20:44657848-44658386 1.8e-07 71_[+3] chr10:35931076-35931461 2.1e-07 56_[-3]_15 chr1:22952670-22953434 2.1e-07 44_[+3]_27 chr9:140778845-140779360 2.1e-07 64_[+3]_7 chr22:39638906-39639791 2.6e-07 69_[+3]_2 chr20:44660334-44660912 2.9e-07 6_[-3]_65 chr12:2861843-2862173 2.9e-07 14_[+3]_57 chr12:113917788-11391846 3.6e-07 14_[+3]_57 chr19:15125219-15125741 4e-07 60_[+3]_11 chr20:30556178-30556801 4e-07 37_[-3]_34 chr17:72667320-72667986 4e-07 1_[-3]_70 chr18:44786508-44787108 4.5e-07 32_[+3]_39 chr8:50824108-50824594 5e-07 13_[-3]_58 chr20:48099185-48099681 5e-07 1_[+3]_70 chr2:98962812-98963308 9.4e-07 25_[+3]_46 chr18:35144742-35145403 1.3e-06 43_[-3]_28 chr6:146349183-146349911 1.6e-06 55_[+3]_16 chr12:113229180-11322983 1.7e-06 71_[-3] chr18:47087772-47088127 2.1e-06 69_[-3]_2 chr5:175223517-175224504 3.7e-06 43_[-3]_28 chr19:50143341-50143901 4.4e-06 38_[-3]_33 chr12:57634738-57635182 4.8e-06 33_[+3]_38 chr19:15126748-15127143 4.8e-06 24_[+3]_47 chr12:119060119-11906068 5.3e-06 36_[-3]_35 chr9:138863784-138864405 5.3e-06 63_[-3]_8 chr19:39902844-39903644 5.3e-06 63_[-3]_8 chr11:66175933-66176508 5.8e-06 4_[+3]_67 chr15:51973347-51973904 7.5e-06 10_[-3]_61 chr20:44685926-44686458 8.2e-06 61_[-3]_10 chr19:47940644-47941142 1.2e-05 39_[+3]_32 chr19:46455809-46456826 1.2e-05 46_[-3]_25 chr9:138048360-138048718 1.4e-05 37_[+3]_34 chr19:18343565-18345057 1.9e-05 26_[-3]_45 chr1:33896608-33896919 2e-05 18_[-3]_53 chr5:151303906-151304733 2.4e-05 10_[+3]_61 chr6:25652246-25652797 2.8e-05 4_[-3]_67 chr7:154861581-154862290 3e-05 42_[+3]_29 chr11:69453708-69454080 3.5e-05 19_[-3]_52 chr4:8581990-8582926 4.8e-05 55_[+3]_16 chr20:37507466-37507779 5.9e-05 68_[-3]_3 chr3:48698951-48699864 5.9e-05 34_[-3]_37 chr11:61334449-61335293 6.4e-05 23_[-3]_48 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGMGGGRSCNGSGSSVGVGGSGSVGGVG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGMGGGRSCNGSGSSVGVGGSGSVGGVG width=29 seqs=64 chr1:2457609-2458825 ( 48) GGCCCGGGGCTGCGGGCGGGCGGGCGGTT 1 chr7:25901756-25902479 ( 59) GGGCGGAGCCGGGGGCGGGGGGAGATGCT 1 chr5:175298363-175299076 ( 49) GGCCGAGGGCCGGGAGGGCGGAGCTGGGC 1 chr10:61024905-61025283 ( 24) GGGAAGGGGTTTTGGCGGGGGGGGGGGGG 1 chr11:122852514-12285283 ( 14) GGGAGGGTGCGGGAGGCTCGGGGCGGGGC 1 chr12:11653361-11653881 ( 2) GGGCGGAGGCTGCGCTTGCGGCAGCTGCG 1 chr16:24266985-24267547 ( 25) GGGAAGGAACGGGGGAAGGGCGGGGTGAG 1 chr20:61747601-61748172 ( 13) TGCAGGGAGCTGCGCGGGGGGAGCCGCAG 1 chr9:136324629-136325236 ( 47) GGGCGGGACCCGCAGGCTGCGGCGAGGAG 1 chr13:53422688-53423033 ( 37) AGGCGGAGGGGCGACGCGAGGGGGAGGCG 1 chr2:220172782-220173837 ( 5) GGGTGGGGGATGGGAGGGTGGCGCGTGGG 1 chr20:10199717-10200712 ( 15) TGGCGGGAGGCGGGCGGGTCGTGCCGGGT 1 chr8:41753441-41754039 ( 71) GGTGGGGCGCGGCGCCCGGTGCGGCGGAG 1 chr22:27247840-27248548 ( 71) AGCAGGGAGGAGGAGGAGAGGGGGGAGAG 1 chrX:199983-200541 ( 40) GGGCGGCCGTGGTGCCAGGCCCGGGTGGG 1 chr1:37720800-37721430 ( 60) GGGCGAAGCCAGGGGCCCACGTGGGAGGG 1 chr3:9593865-9594448 ( 38) CTGCGTGGGCAGCGGGCTGGCGGGCCGCG 1 chr1:230562137-230562630 ( 55) GGTCCGGGCCCGCGGACGGAGTGCGGGCC 1 chr6:114661920-114662769 ( 40) GGGAGGGAGAGGGAGAGGGAGAGGGAGAG 1 chr16:89992506-89993092 ( 2) CTGCGGAGCCGCGGGCCGGGCGGGAACCG 1 chr10:120355420-12035597 ( 49) AGCAGGGGGCTCGTGTGGCGGGGCCACGG 1 chr19:7627504-7628420 ( 47) TGGAGGGCGCAGGGATATCGGCGGGGGTG 1 chr20:44657848-44658386 ( 72) GGGACTGACCCGGGCGGTGGGCGCCAGTT 1 chr10:35931076-35931461 ( 57) CGCCCGGCGATTGGCTCGCGGGGCTGGGG 1 chr1:22952670-22953434 ( 45) GGGCTGGGAGAGGGGGGTGCGGACAGGGC 1 chr9:140778845-140779360 ( 65) GGGTGTAAGCAGTGCTGGGGGGTGCGGGC 1 chr22:39638906-39639791 ( 70) GGGCATGCCCTGCGCGTGCCGGAGGGCGT 1 chr20:44660334-44660912 ( 7) CGCCAGGCGCACTGGTTGAGGGGGATGGG 1 chr12:2861843-2862173 ( 15) GCTCGGGCGCGGGGTGTGGCGCGGCGGGT 1 chr12:113917788-11391846 ( 15) CGGCGGCGCCGTCGCCGGAGCAAGGGGGC 1 chr19:15125219-15125741 ( 61) GGGACAGGCTGGGGGACGAGGGTGTGGAC 1 chr20:30556178-30556801 ( 38) AGGCGGCAGCAGCGGCGGCGGTAGGCGCT 1 chr17:72667320-72667986 ( 2) GGGTCTGAGCTCTGCGGGCCGGGCCGCAT 1 chr18:44786508-44787108 ( 33) GGCCGGAGACGGGGCTAGGGGTGCACCCT 1 chr8:50824108-50824594 ( 14) CGGCAAGGACAGCGGCGGCGGCAGCGTAG 1 chr20:48099185-48099681 ( 2) GGGCCGCCCCTCGGGGCGGGGAGAGGGCC 1 chr2:98962812-98963308 ( 26) GGGGGGCGCCGGGAGGTGTGCTGGGGCCG 1 chr18:35144742-35145403 ( 44) TGGAGAGAGCAGCGGGCGCCGATGAAGAG 1 chr6:146349183-146349911 ( 56) CGGCAGGGCTCAGGCTGCCGCGGCGAGAG 1 chr12:113229180-11322983 ( 72) CTGTGTGAGCAAGGGAAGCGGGGCGGCAG 1 chr18:47087772-47088127 ( 70) GGGAGTCCGTCGGGGGAGAGCCACCTGGT 1 chr5:175223517-175224504 ( 44) GATAGGGACCCGGTGCGGCGCGGGAGCTG 1 chr19:50143341-50143901 ( 39) CGCTGAGAGCGCGTGGCGCCGCTCAGGGC 1 chr12:57634738-57635182 ( 34) CGCCTGGGGCTGTGGACTAGGAGGCCCGT 1 chr19:15126748-15127143 ( 25) GGGTCGAGGGTGTGGACGAGGTAGGAGAC 1 chr12:119060119-11906068 ( 37) GGTAGTGGCCCAGAGTGTGGGAGGCTGAT 1 chr9:138863784-138864405 ( 64) GTGAAGGGCCCTGGCGTGTCCGGGGAGTG 1 chr19:39902844-39903644 ( 64) CTGTGAGGCGGGGGGCGGTCGCCCGGGGC 1 chr11:66175933-66176508 ( 5) GAGCGGAGACCGGGTAAGGGGGGCCTTGG 1 chr15:51973347-51973904 ( 11) CGCCAGAGGCGGGAGGGGATGGCGTCGGT 1 chr20:44685926-44686458 ( 62) GTGATGACCTCGCGGCCGCCGCCGCGGAC 1 chr19:47940644-47941142 ( 40) GGTCCTGGGTCGGGGGCTCACAGCCTGTG 1 chr19:46455809-46456826 ( 47) CGTAAGGGAACGGAAACGCGGGGCTGGCT 1 chr9:138048360-138048718 ( 38) GGCCAGAAGTCCGAGAGCCCGCGCCTCAG 1 chr19:18343565-18345057 ( 27) GGGACGGCAGACGGTTTTCGGGGCTGGTG 1 chr1:33896608-33896919 ( 19) GGCTGGAGCGGCCACGTGACGCGCGCTGG 1 chr5:151303906-151304733 ( 11) CGTAGATACCACGGACAGCGGCGGCTGCG 1 chr6:25652246-25652797 ( 5) TGCTGGGGAGGACGCGAGCGCTGCTGGCC 1 chr7:154861581-154862290 ( 43) AGCCGCGCGCTCTGAGCCAGGAGGCGGGG 1 chr11:69453708-69454080 ( 20) GCGCGGCGCTGTTACTAGGCGGACCGGGC 1 chr4:8581990-8582926 ( 56) CGGTTGCGCTGCCTCCAGGGCGGCCCCGG 1 chr20:37507466-37507779 ( 69) CGCCTAAACACGCACTGGCCGTCCGGGAG 1 chr3:48698951-48699864 ( 35) GGGCGAGAGAGCCACGACATCCGGAGCAG 1 chr11:61334449-61335293 ( 24) AGGACAAGGAGCCGCGTGGCCGACAGCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGMGGGRSCNGSGSSVGVGGSGSVGGVG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 31968 bayes= 9.69957 E= 5.4e-040 -151 11 132 -178 -310 -289 186 -151 -1264 11 143 -110 22 111 -289 -78 -78 -43 135 -178 -64 -389 153 -93 -19 -89 143 -410 7 -31 115 -410 -110 57 119 -1264 -129 135 -72 -78 -40 11 57 -40 -210 1 143 -178 -1264 35 128 -93 -29 -1264 163 -210 -151 57 115 -251 -78 -9 91 -51 -40 43 57 -93 -1264 -157 172 -78 -40 63 63 -178 -251 28 143 -251 -1264 11 169 -1264 -78 11 96 -93 -64 -157 157 -210 -410 91 124 -1264 -51 63 57 -129 -78 -109 124 -51 -1264 -9 166 -251 7 -19 75 -110 -1264 -9 128 -29 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGMGGGRSCNGSGSSVGVGGSGSVGGVG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 64 E= 5.4e-040 0.093750 0.250000 0.578125 0.078125 0.031250 0.031250 0.843750 0.093750 0.000000 0.250000 0.625000 0.125000 0.312500 0.500000 0.031250 0.156250 0.156250 0.171875 0.593750 0.078125 0.171875 0.015625 0.671875 0.140625 0.234375 0.125000 0.625000 0.015625 0.281250 0.187500 0.515625 0.015625 0.125000 0.343750 0.531250 0.000000 0.109375 0.593750 0.140625 0.156250 0.203125 0.250000 0.343750 0.203125 0.062500 0.234375 0.625000 0.078125 0.000000 0.296875 0.562500 0.140625 0.218750 0.000000 0.718750 0.062500 0.093750 0.343750 0.515625 0.046875 0.156250 0.218750 0.437500 0.187500 0.203125 0.312500 0.343750 0.140625 0.000000 0.078125 0.765625 0.156250 0.203125 0.359375 0.359375 0.078125 0.046875 0.281250 0.625000 0.046875 0.000000 0.250000 0.750000 0.000000 0.156250 0.250000 0.453125 0.140625 0.171875 0.078125 0.687500 0.062500 0.015625 0.437500 0.546875 0.000000 0.187500 0.359375 0.343750 0.109375 0.156250 0.109375 0.546875 0.187500 0.000000 0.218750 0.734375 0.046875 0.281250 0.203125 0.390625 0.125000 0.000000 0.218750 0.562500 0.218750 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGMGGGRSCNGSGSSVGVGGSGSVGGVG MEME-3 regular expression -------------------------------------------------------------------------------- [GC]G[GC][CA]GG[GA][GA][GC]C[GCAT][GC][GC][GA][GC][GC][GCA]G[CGA][GC][GC][GC]G[GC][CG]G[GC][GAC][GCT] -------------------------------------------------------------------------------- Time 456.63 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:50490316-50490974 7.78e-05 55_[-1(7.07e-08)]_24 chr3:10501657-10502450 2.82e-02 74_[-1(7.63e-05)]_5 chr20:44669306-44670082 1.19e-08 68_[-1(2.09e-10)]_11 chr19:39902844-39903644 4.86e-03 [-3(2.40e-05)]_29_[-3(3.67e-06)]_13 chr1:159147036-159147773 7.50e-01 100 chr11:66185490-66187691 3.97e-01 100 chr17:33030640-33031357 3.83e-01 100 chr8:10847647-10848192 8.63e-04 3_[-1(1.66e-07)]_76 chr18:34849774-34850592 2.25e-06 34_[-1(4.45e-10)]_13_[-1(4.35e-09)]_\ 11 chr4:8581990-8582926 1.72e-08 34_[+1(5.24e-11)]_[+3(4.76e-05)]_16 chr4:180016596-180017541 8.89e-01 100 chr19:18343565-18345057 1.19e-02 26_[-3(1.89e-05)]_45 chr1:2457609-2458825 5.71e-07 47_[+3(2.72e-10)]_24 chr2:219827401-219828324 9.41e-01 100 chr11:61334449-61335293 6.44e-08 [-1(1.64e-10)]_19_[-1(9.36e-06)]_39 chr20:37321040-37321557 6.99e-05 4_[-2(7.16e-07)]_85 chr1:37486083-37486871 1.23e-09 33_[-1(2.32e-10)]_46 chr20:44859168-44859945 9.77e-01 100 chr20:37314298-37314883 1.23e-01 100 chr5:151303906-151304733 4.40e-08 10_[+3(2.40e-05)]_7_[+1(2.88e-10)]_\ 11_[+1(6.07e-06)]_1 chr19:54406207-54406846 2.72e-07 36_[-1(2.09e-10)]_43 chr10:124671081-12467179 9.57e-01 100 chr2:163697144-163697708 6.43e-01 100 chr3:38847013-38847664 9.75e-01 100 chr20:48099185-48099681 1.27e-03 1_[+3(5.00e-07)]_29_[-3(4.02e-06)]_\ 12 chr5:101022152-101022870 5.77e-01 100 chr15:74583563-74584195 4.15e-01 100 chr4:180018762-180019489 1.56e-06 9_[-1(7.77e-11)]_70 chr9:128844780-128845702 9.61e-01 100 chr8:142726050-142726657 3.47e-01 100 chr19:7627504-7628420 7.10e-04 46_[-3(1.46e-07)]_25 chr20:37309008-37309746 1.33e-06 20_[-1(1.86e-10)]_59 chr1:6112407-6113306 1.36e-01 56_[+2(8.52e-05)]_33 chr5:141133144-141134207 8.24e-01 100 chr2:55360854-55361445 6.69e-02 100 chr20:44655909-44656505 3.84e-01 100 chr1:37720800-37721430 1.27e-04 59_[+3(1.03e-07)]_12 chr12:11653361-11653881 1.44e-06 1_[-3(3.86e-09)]_22_[-3(2.05e-05)]_\ 19 chr3:9593865-9594448 9.10e-04 37_[-3(1.16e-07)]_34 chr7:30711476-30712032 3.85e-01 100 chr6:84568790-84569408 9.99e-01 100 chr7:154861581-154862290 1.32e-07 20_[+1(1.06e-08)]_1_[+3(3.03e-05)]_\ 29 chr10:98841416-98841982 2.81e-01 100 chr6:69942784-69943403 7.46e-01 100 chr9:136324629-136325236 1.08e-06 46_[-3(1.03e-08)]_25 chr5:161495485-161495885 5.00e-07 48_[+1(7.53e-10)]_31 chr15:51973347-51973904 2.32e-02 10_[-3(7.53e-06)]_61 chr9:138863784-138864405 8.43e-03 63_[-3(5.28e-06)]_8 chr5:175223517-175224504 1.93e-03 43_[-3(3.67e-06)]_28 chr17:72667320-72667986 1.91e-04 1_[-3(4.03e-07)]_2_[-3(5.92e-05)]_\ 39 chr1:37389653-37390167 1.34e-01 100 chr7:32720266-32720892 6.48e-01 100 chr5:98345740-98346486 3.91e-01 100 chr11:71162495-71163178 3.37e-01 100 chr10:20546291-20546874 2.33e-02 58_[+2(3.80e-06)]_31 chr12:108861869-10886244 5.36e-01 100 chr4:134514751-134515434 5.40e-01 100 chr12:113229180-11322983 5.00e-03 71_[-3(1.71e-06)] chr14:96401388-96402140 5.27e-07 35_[-1(5.24e-11)]_44 chr11:113344864-11334557 1.17e-07 52_[+1(2.09e-10)]_27 chr6:90509307-90509802 1.65e-01 100 chr15:48482819-48483808 9.96e-01 100 chr11:70496213-70496810 1.68e-03 28_[-1(2.62e-05)]_51 chr2:220172782-220173837 2.88e-06 4_[-3(1.36e-08)]_23_[-1(5.17e-05)]_\ 23 chr10:106584190-10658451 3.79e-06 43_[-1(2.08e-08)]_7_[-1(4.35e-09)]_\ 8 chr11:66056984-66057530 2.83e-01 100 chr8:65292477-65292978 5.33e-01 100 chr15:44579876-44581256 3.23e-01 100 chr3:170302126-170302893 2.03e-09 36_[+1(1.95e-11)]_43 chrX:153140550-153141687 1.67e-01 100 chr1:50774499-50775126 1.14e-01 100 chr14:93380364-93380989 5.17e-01 100 chr1:236451150-236451759 9.47e-01 100 chr12:131432640-13143323 2.81e-02 26_[-2(1.18e-05)]_30_[-2(4.47e-05)]_\ 22 chr3:54222221-54222707 3.54e-01 100 chr2:200733704-200734901 6.47e-01 100 chr8:108507039-108508662 9.28e-01 100 chr9:140778845-140779360 2.70e-04 64_[+3(2.07e-07)]_7 chr12:119498825-11949941 6.78e-01 100 chr8:103395185-103395890 1.57e-02 4_[+2(2.03e-05)]_85 chr22:37040282-37040629 2.36e-05 62_[-1(1.49e-09)]_17 chr17:4396590-4396940 8.46e-07 23_[-1(3.62e-10)]_56 chr11:44692479-44693047 6.15e-01 100 chr4:94068563-94069336 5.19e-01 100 chr2:129931599-129932475 8.22e-01 100 chr7:100026588-100026964 5.35e-01 100 chr2:44362422-44362954 3.41e-01 100 chr3:142585507-142586079 7.69e-01 100 chr9:134674573-134675112 7.74e-01 100 chr5:120187802-120188406 3.31e-05 21_[+2(1.10e-06)]_68 chr9:1995039-1995595 9.73e-02 73_[-2(3.99e-05)]_16 chr11:116249966-11625050 8.88e-01 100 chr8:79065424-79065967 6.81e-01 100 chr7:126747661-126748369 4.52e-09 6_[-1(6.04e-13)]_73 chr17:19364312-19364721 9.15e-03 18_[+2(3.09e-06)]_71 chr19:54974936-54975736 1.64e-02 54_[+2(8.52e-05)]_19_[+2(8.52e-05)]_\ 5 chr6:4893936-4895523 5.75e-01 100 chr3:115044212-115044784 7.96e-01 100 chr22:27247840-27248548 5.95e-04 70_[-3(8.10e-08)]_1 chr22:22496492-22497430 5.50e-01 100 chr15:71342410-71342966 9.09e-01 100 chr1:11695894-11696261 1.82e-07 42_[-1(6.81e-10)]_37 chr10:86051013-86051532 7.24e-01 100 chr3:21683397-21683795 2.09e-02 2_[+2(2.03e-05)]_38_[-2(6.35e-06)]_\ 38 chr2:119863849-119864402 7.69e-01 100 chr20:1986514-1987323 1.08e-01 68_[+2(5.18e-05)]_21 chr16:17232744-17233230 9.30e-01 100 chr6:158956886-158957414 3.60e-01 100 chr5:135700792-135701419 3.50e-01 100 chr20:30556178-30556801 1.52e-04 8_[-3(3.05e-06)]_[-3(4.03e-07)]_34 chr19:12943017-12943987 7.98e-01 100 chr9:7052675-7053585 9.07e-01 100 chr8:53164788-53165288 9.04e-01 100 chr3:126881679-126882210 9.78e-03 10_[+3(8.43e-05)]_61 chrX:73479548-73480280 3.36e-03 46_[-3(2.22e-05)]_25 chr7:154106785-154107268 1.86e-05 5_[-1(1.97e-09)]_74 chr18:11714291-11714841 5.91e-01 100 chr12:108608197-10860882 2.32e-01 100 chr1:11533497-11534083 1.18e-01 100 chr1:32253723-32254862 6.87e-01 100 chr16:26231906-26232825 9.26e-01 100 chr12:119060119-11906068 8.13e-03 36_[-3(5.28e-06)]_35 chr8:61588773-61589503 5.50e-01 100 chr5:159593226-159593842 1.89e-01 100 chr2:24270229-24270558 8.27e-02 47_[-2(9.20e-05)]_42 chr20:41669003-41669413 3.21e-01 100 chr1:22937962-22938546 3.57e-01 100 chr11:74925402-74925782 1.12e-08 52_[+1(2.05e-12)]_27 chr1:30224984-30225365 3.06e-05 14_[-1(2.16e-09)]_65 chr8:67089687-67090069 2.59e-09 49_[-1(9.90e-12)]_30 chr4:113261241-113261969 7.43e-01 100 chr3:63053348-63054070 5.14e-01 100 chr3:48698951-48699864 1.74e-02 34_[-3(5.92e-05)]_37 chr18:44082230-44082958 2.66e-09 36_[+1(1.46e-10)]_43 chr16:49191929-49192484 7.65e-04 7_[-1(8.55e-08)]_72 chr1:153394779-153395304 6.44e-01 100 chr4:189029220-189029687 3.86e-02 69_[+2(7.79e-06)]_20 chr16:24266985-24267547 3.45e-05 24_[+3(5.14e-09)]_47 chr6:114661920-114662769 8.68e-04 39_[+3(1.30e-07)]_32 chr2:189168213-189168955 7.74e-01 100 chr8:41753441-41754039 3.20e-04 27_[-3(6.83e-05)]_14_[-3(8.10e-08)]_\ 1 chr5:152655726-152656090 1.95e-07 42_[+1(4.51e-11)]_37 chr5:141218041-141219137 3.74e-01 100 chr2:212226061-212226798 9.07e-01 100 chr1:7135206-7135741 9.98e-01 100 chr18:35144742-35145403 2.40e-03 43_[-3(1.27e-06)]_28 chr7:76302666-76303107 1.97e-02 23_[+2(6.35e-06)]_66 chr6:88829451-88829907 1.27e-06 25_[-1(2.58e-08)]_30_[-2(1.55e-05)]_\ 13 chr12:28613125-28614054 1.30e-02 5_[-2(3.99e-05)]_84 chr7:70322682-70323139 8.53e-02 61_[-2(3.26e-05)]_28 chr1:230563708-230564140 1.23e-02 20_[+2(6.35e-06)]_69 chr5:175298363-175299076 1.52e-06 48_[+3(2.48e-09)]_23 chr6:122773431-122773926 9.55e-01 100 chr3:127177381-127177856 4.87e-01 100 chr19:54431014-54431368 9.24e-07 10_[-1(1.11e-09)]_69 chr19:34231657-34232289 1.69e-01 100 chr16:23038133-23038472 2.70e-05 26_[+1(2.58e-09)]_53 chrX:199983-200541 6.72e-05 39_[+3(9.13e-08)]_32 chr8:50824108-50824594 1.62e-04 13_[-3(5.00e-07)]_58 chr6:34100355-34100674 4.64e-07 30_[+1(1.02e-09)]_49 chr4:119590374-119590697 1.09e-07 32_[+1(1.69e-11)]_47 chr3:117041738-117042086 1.55e-05 44_[-1(1.44e-08)]_35 chr19:36319570-36320103 1.12e-01 100 chr12:113917788-11391846 7.30e-04 14_[+3(3.61e-07)]_57 chr10:120355420-12035597 2.11e-07 13_[-1(2.62e-07)]_14_[-3(1.46e-07)]_\ 23 chr16:17877918-17878299 4.53e-05 59_[-1(3.09e-09)]_20 chr6:34083118-34083507 3.18e-08 42_[+1(6.86e-11)]_37 chr6:146349183-146349911 1.14e-08 31_[-1(1.02e-09)]_3_[+3(1.55e-06)]_\ 16 chr4:8569922-8570425 5.51e-01 100 chr4:115483397-115483940 7.07e-01 100 chr3:2345241-2345904 4.05e-02 100 chr3:104265962-104266345 1.07e-02 87_[+2(4.19e-06)]_2 chr18:55021033-55021461 1.38e-01 100 chr12:2861843-2862173 7.35e-09 14_[+3(2.90e-07)]_[-1(3.38e-09)]_36 chr18:47088177-47088530 1.48e-02 50_[-2(7.79e-06)]_39 chr19:46455809-46456826 6.43e-03 7_[+3(6.36e-05)]_10_[-3(1.16e-05)]_\ 25 chr2:29516713-29517052 8.30e-01 100 chr11:134897407-13489773 1.42e-01 100 chr9:128456531-128457206 5.98e-03 11_[-2(6.35e-06)]_78 chr7:26775613-26776211 3.64e-03 88_[-2(1.10e-06)]_1 chr6:129275817-129276225 1.88e-02 60_[-2(5.30e-06)]_29 chr5:176230753-176231282 3.06e-01 100 chr5:151625992-151626537 5.75e-01 100 chr1:99603171-99603492 4.15e-02 74_[+2(3.68e-05)]_15 chr4:185114558-185115107 4.77e-03 77_[+2(1.10e-06)]_12 chr1:67865566-67866007 8.26e-01 100 chr19:36466527-36466898 2.70e-05 49_[+1(2.16e-09)]_30 chr7:7937057-7937830 7.46e-03 28_[-2(3.09e-06)]_61 chr7:35054967-35055396 3.00e-02 7_[+2(7.02e-05)]_82 chr5:16178708-16179261 7.56e-01 100 chr3:10636604-10636939 1.92e-06 31_[+1(8.35e-10)]_48 chr17:56197576-56198265 3.92e-01 100 chr17:49990323-49990716 1.35e-02 38_[+2(1.18e-05)]_40_[+2(6.35e-06)] chr13:94342280-94343026 4.24e-05 21_[+1(2.82e-09)]_58 chr10:23164993-23165532 2.56e-01 100 chr1:11905619-11906123 4.25e-03 26_[+3(7.33e-05)]_21_[+2(5.63e-05)]_\ 13 chr9:34430770-34431129 3.04e-06 31_[-1(1.36e-09)]_48 chr8:62200374-62200949 9.48e-05 25_[+1(2.21e-07)]_54 chr4:163084977-163085576 2.63e-03 14_[+2(2.27e-05)]_75 chr20:10199717-10200712 4.57e-05 14_[+3(2.99e-08)]_5_[+3(7.63e-07)]_\ 23 chr18:44077137-44077465 3.10e-07 32_[-1(6.05e-11)]_47 chr6:62737195-62737592 1.92e-02 69_[-2(3.80e-06)]_20 chr1:175028692-175030074 9.16e-01 100 chrX:50357311-50357997 1.63e-02 26_[+2(4.19e-06)]_63 chrX:114828476-114829050 6.00e-01 100 chr9:120031206-120031905 4.38e-03 72_[+2(1.43e-06)]_17 chr7:53394325-53394746 5.77e-03 40_[+2(5.63e-05)]_49 chr7:133619194-133619852 7.83e-01 100 chr6:98651117-98651650 7.72e-01 100 chr5:6328153-6328615 8.88e-01 100 chr5:158526945-158527618 3.84e-01 100 chr22:33472134-33472916 7.67e-01 100 chr2:204598883-204599421 5.45e-02 34_[-2(2.27e-05)]_55 chr2:154720402-154720912 1.58e-01 51_[-2(7.47e-05)]_38 chr16:89992506-89993092 2.33e-04 1_[+3(1.46e-07)]_70 chr14:82541942-82542309 7.61e-08 29_[+1(8.48e-12)]_50 chr13:79163385-79163779 1.24e-06 7_[-1(4.98e-10)]_72 chr7:25901756-25902479 4.74e-08 38_[-2(3.26e-05)]_9_[-3(5.27e-10)]_\ 13 chr6:24127052-24127369 7.14e-06 25_[+1(1.11e-09)]_54 chr5:116199990-116200537 1.98e-04 53_[+1(8.27e-07)]_26 chr18:68971736-68972423 3.62e-01 100 chr16:83453863-83454186 1.63e-06 32_[+1(1.46e-10)]_47 chr6:108501037-108502044 3.60e-01 100 chr17:19361884-19362816 8.17e-01 100 chr1:178235692-178236237 7.56e-03 49_[-2(1.32e-05)]_40 chr6:19988844-19989352 9.70e-01 100 chr2:62581965-62582597 2.89e-01 100 chr19:5404057-5404391 4.34e-06 59_[-1(6.81e-10)]_20 chr19:39714287-39714686 9.66e-01 100 chr17:77290580-77290942 1.13e-08 28_[+1(3.87e-11)]_51 chr14:41754424-41754970 8.80e-01 100 chr1:38260566-38261376 3.94e-01 100 chr9:84164308-84164841 7.55e-01 100 chr9:132552745-132553062 2.56e-06 47_[-1(3.67e-09)]_32 chr12:119082870-11908348 1.68e-01 100 chr1:22952670-22953434 1.48e-04 44_[+3(2.07e-07)]_27 chr17:33032889-33033427 5.29e-01 100 chr15:77994885-77995239 1.66e-07 3_[+1(6.05e-11)]_76 chr8:105040857-105041456 5.05e-01 100 chr3:151110959-151111812 7.06e-01 100 chr1:59170016-59170694 3.21e-02 21_[-2(4.24e-05)]_68 chr12:131011383-13101173 5.85e-07 42_[-1(1.46e-10)]_37 chr8:57357869-57358448 2.48e-01 100 chr4:122717515-122718152 3.83e-01 100 chr20:61747601-61748172 1.90e-05 12_[+3(7.84e-09)]_59 chr5:3123625-3124232 5.95e-01 100 chr2:44243272-44243856 4.02e-01 100 chr2:98962812-98963308 2.18e-03 25_[+3(9.38e-07)]_46 chrX:150645144-150645489 5.66e-02 55_[-2(3.68e-05)]_34 chr8:71291932-71292645 1.78e-02 30_[-2(9.87e-05)]_3_[+2(3.09e-06)]_\ 45 chr5:159546488-159547063 6.98e-01 100 chr8:74218824-74219638 1.46e-02 25_[+2(3.09e-06)]_64 chr7:84541214-84541987 6.35e-01 100 chr7:136084181-136084578 1.07e-01 86_[-2(3.26e-05)]_3 chr6:99237141-99237565 5.60e-01 100 chr6:139298892-139299365 1.35e-02 27_[+2(6.35e-06)]_62 chr6:104570858-104571467 9.86e-01 100 chr4:38490497-38490903 1.55e-01 100 chr4:136304858-136305559 6.64e-03 61_[-2(3.80e-06)]_28 chr2:162225781-162226214 3.96e-02 82_[-2(3.26e-05)]_7 chr20:6745286-6745717 2.70e-01 100 chr20:60071948-60072560 1.91e-01 100 chr20:47139683-47140160 3.14e-05 12_[-1(1.97e-09)]_67 chr16:7063820-7064467 8.76e-07 51_[-1(1.36e-09)]_28 chr15:52688384-52689081 9.66e-01 100 chr9:134651895-134652250 4.00e-07 28_[+1(3.62e-10)]_51 chr6:33085707-33086557 9.53e-01 100 chr6:25652246-25652797 2.02e-02 4_[-3(2.81e-05)]_67 chr2:116354295-116354874 9.56e-01 100 chr14:67735183-67735649 3.72e-03 26_[+2(1.10e-06)]_63 chr12:9517117-9517450 1.17e-03 54_[+2(7.16e-07)]_11_[+2(7.79e-06)]_\ 13 chr11:31259990-31260716 9.35e-01 100 chr3:11006334-11006816 4.69e-01 100 chr19:47940644-47941142 6.19e-03 39_[+3(1.16e-05)]_32 chr11:88034210-88034889 6.03e-03 10_[+2(2.26e-06)]_79 chr3:124607758-124608196 2.49e-01 100 chr13:100847633-10084820 3.28e-01 100 chr5:141122985-141123485 3.22e-01 100 chr2:69677849-69678439 1.32e-01 56_[-2(9.20e-05)]_33 chr19:46721434-46721967 1.77e-01 100 chr20:44657848-44658386 2.61e-05 13_[+3(1.06e-05)]_29_[+3(1.85e-07)] chr3:56528710-56529053 2.00e-01 100 chr3:174257910-174258959 2.80e-01 100 chr1:175712098-175712936 4.89e-01 100 chr6:96564354-96565092 9.79e-07 60_[-1(1.02e-10)]_19 chr2:27061370-27061753 2.77e-01 100 chr19:15126748-15127143 6.43e-09 12_[+3(3.67e-06)]_25_[-1(2.32e-10)]_\ 13 chr18:44786508-44787108 1.67e-03 32_[+3(4.49e-07)]_2_[-3(5.92e-05)]_\ 8 chr12:77266118-77266606 2.01e-02 51_[+2(1.32e-05)]_38 chr2:8820859-8821537 1.61e-03 73_[-2(6.35e-06)]_16 chr16:12755595-12756092 5.49e-02 100 chr9:80190774-80191231 1.12e-01 24_[+2(3.99e-05)]_65 chr1:26745400-26745906 1.06e-02 56_[+3(3.03e-05)]_15 chr2:207507386-207507742 1.66e-05 49_[+1(6.59e-09)]_30 chr14:34420329-34420853 2.13e-01 100 chr11:76653225-76653711 1.00e-01 80_[+2(3.26e-05)]_9 chr8:35050033-35050599 6.15e-01 100 chr3:110317702-110318175 2.62e-01 100 chr9:138048360-138048718 2.68e-09 37_[+3(1.36e-05)]_1_[-1(5.24e-11)]_\ 12 chr16:7232515-7232986 1.44e-06 5_[+1(3.24e-10)]_74 chr3:119079794-119080245 6.86e-01 100 chr19:50143341-50143901 4.76e-06 13_[-2(1.43e-06)]_14_[-3(4.41e-06)]_\ 33 chr9:128463108-128464186 9.32e-01 100 chr7:131955101-131955899 7.46e-02 100 chr7:100701690-100702031 5.06e-08 46_[+1(1.95e-11)]_33 chr5:71358881-71359380 4.39e-02 51_[-2(1.55e-05)]_38 chr5:52230435-52230899 9.55e-01 100 chr3:78396319-78396741 2.67e-02 68_[+2(1.07e-05)]_21 chr3:113897399-113897959 7.54e-01 100 chr2:59061378-59061927 1.97e-01 100 chr17:65970915-65971650 2.18e-01 100 chr1:50745671-50745969 6.28e-08 55_[-1(2.88e-10)]_24 chr13:88150794-88151280 6.14e-01 100 chr12:16942106-16942652 5.31e-01 100 chr10:20276712-20277130 6.51e-01 100 chrX:30237633-30238305 9.77e-01 100 chr7:114570017-114570519 4.97e-02 100 chr7:110584946-110585436 7.35e-03 31_[-2(5.18e-05)]_58 chr5:93209819-93210167 6.19e-03 71_[-2(1.43e-06)]_18 chr3:77328049-77328904 1.79e-03 74_[-2(7.16e-07)]_15 chr20:37507466-37507779 1.28e-02 68_[-3(5.92e-05)]_3 chr19:13763594-13763989 1.83e-02 3_[+2(5.63e-05)]_39_[-2(5.18e-05)]_\ 36 chr17:61994063-61994627 1.62e-01 100 chr14:50347880-50348557 1.75e-01 100 chr13:64913725-64914115 5.89e-01 100 chr1:30446942-30447549 1.87e-01 74_[-2(7.02e-05)]_15 chr12:83591267-83591872 6.93e-01 100 chr11:7098388-7098704 4.20e-07 32_[+1(1.63e-09)]_47 chr11:103834366-10383483 8.12e-01 100 chr10:26656786-26657117 4.57e-07 25_[+1(3.38e-09)]_54 chr20:34972940-34973265 5.68e-08 52_[+1(4.51e-11)]_27 chr3:104238661-104239265 5.74e-02 85_[+2(1.55e-05)]_4 chr18:60499561-60499889 1.76e-02 48_[+2(9.23e-06)]_41 chr10:13442564-13442920 6.50e-03 15_[+2(6.35e-06)]_39_[-2(6.35e-06)]_\ 24 chr10:52378861-52379456 6.01e-02 81_[-2(1.32e-05)]_8 chr9:28970165-28970564 7.54e-01 100 chr16:83735191-83735496 4.91e-07 31_[+1(3.99e-10)]_48 chr11:61407542-61407931 9.44e-02 100 chr21:44377036-44377506 2.55e-01 100 chr20:44685926-44686458 1.39e-03 61_[-3(8.21e-06)]_10 chr17:70161412-70161916 9.86e-01 100 chr15:89542149-89542801 7.43e-01 100 chr13:53424464-53425082 1.59e-01 100 chr10:89733292-89733724 2.35e-01 100 chr11:41136407-41136978 8.16e-01 100 chr2:63973770-63974061 4.98e-01 100 chr19:12444437-12444831 3.16e-01 100 chr1:33896608-33896919 1.64e-05 7_[+2(2.43e-05)]_[-3(2.05e-05)]_30_\ [-1(5.53e-05)]_2 chr5:92918430-92919211 9.67e-02 100 chr5:54920928-54921285 5.76e-03 33_[+2(9.89e-06)]_56 chr16:16064876-16065350 8.03e-03 62_[-2(1.32e-05)]_27 chr12:57634738-57635182 8.76e-04 33_[+3(4.83e-06)]_38 chr11:122852514-12285283 4.81e-13 13_[+3(3.86e-09)]_1_[-1(8.48e-12)]_\ 36 chr7:14024610-14025305 2.38e-02 74_[+2(3.80e-06)]_15 chr19:15125219-15125741 8.24e-04 24_[+3(5.13e-05)]_7_[+3(4.03e-07)]_\ 11 chr10:83737823-83738533 4.16e-06 47_[+1(2.88e-10)]_32 chr9:10339050-10339465 1.04e-03 71_[+2(3.84e-07)]_18 chr7:130775647-130775954 1.26e-01 100 chr6:21741462-21742115 6.79e-01 100 chr5:6686991-6687610 7.57e-01 100 chr5:170108264-170108559 7.74e-02 100 chr4:27892317-27892666 1.22e-02 23_[+2(3.09e-06)]_15_[-2(5.63e-05)]_\ 40 chr18:60544176-60545003 3.06e-03 15_[+2(1.43e-06)]_74 chr15:53364418-53364833 1.13e-03 4_[-1(2.20e-05)]_75 chr1:45917895-45918227 3.10e-02 21_[+2(7.79e-06)]_68 chr13:72333861-72334234 9.59e-01 100 chr11:43975881-43976206 1.17e-02 36_[+2(6.35e-06)]_39_[-2(5.63e-05)]_\ 3 chr11:113861868-11386226 9.87e-08 53_[+1(2.57e-10)]_26 chr10:61024905-61025283 3.08e-11 23_[+3(3.33e-09)]_10_[+1(8.35e-10)]_\ 17 chr10:10207316-10207974 8.50e-01 100 chr1:183603211-183604095 9.94e-02 76_[+2(2.93e-05)]_13 chr9:2158219-2159267 7.30e-01 100 chr8:22399262-22399774 7.59e-01 100 chr5:94138185-94138542 1.90e-05 46_[-1(1.79e-09)]_33 chr3:180473411-180473877 7.12e-01 100 chr2:79503076-79503535 9.88e-01 100 chr21:17131791-17132146 4.52e-02 43_[-2(2.03e-05)]_46 chr18:9574678-9575103 9.24e-02 79_[+2(3.68e-05)]_10 chr15:66297022-66297536 8.53e-01 100 chr15:59713185-59713711 3.54e-01 100 chr14:66393122-66393631 6.20e-01 100 chr14:63247930-63248426 9.94e-01 100 chr11:69453708-69454080 3.68e-03 19_[-3(3.53e-05)]_11_[-2(9.20e-05)]_\ 30 chr11:6822329-6822994 7.14e-01 100 chr10:73104320-73104733 1.36e-03 31_[+3(9.67e-05)]_1_[+2(4.24e-05)]_\ 28 chr15:76194303-76194768 5.07e-01 100 chr18:33068499-33069039 3.23e-02 77_[+1(9.01e-06)]_2 chr2:30142764-30143506 1.30e-08 59_[+1(6.05e-11)]_20 chr16:8076294-8076837 1.35e-01 100 chr10:95826192-95826726 5.14e-01 100 chr20:19730306-19730683 4.23e-01 100 chr2:190983922-190984331 2.26e-02 9_[+2(7.79e-06)]_80 chr1:71053451-71053776 7.93e-01 100 chr1:30209478-30209809 2.72e-06 32_[-1(2.32e-10)]_47 chr17:33124763-33125374 4.14e-01 100 chr21:37469326-37469638 1.97e-01 100 chrX:13216672-13217322 4.14e-01 100 chr6:21692120-21692542 7.73e-01 100 chr5:145720100-145720426 1.66e-07 38_[-1(1.64e-10)]_41 chr10:99751660-99752007 2.63e-01 100 chr2:120060728-120061213 6.38e-01 100 chr18:70111918-70112278 5.47e-01 100 chr7:8658239-8658872 9.39e-01 100 chr14:79452085-79452548 5.31e-01 100 chr14:48730073-48731029 9.64e-01 100 chr12:26040001-26040613 9.75e-01 100 chr1:154159803-154160120 1.01e-01 83_[-2(3.26e-05)]_6 chr10:35931076-35931461 2.46e-04 56_[-3(2.07e-07)]_15 chr5:95806980-95807322 1.63e-01 42_[+2(7.47e-05)]_47 chr15:80681679-80682071 1.17e-02 7_[-2(1.88e-06)]_82 chr11:22355440-22355932 1.00e+00 100 chr2:148795290-148795598 6.63e-01 100 chr8:72928396-72928760 6.90e-03 23_[-2(1.10e-06)]_4_[+2(4.52e-06)]_\ 51 chr8:70371785-70372943 8.51e-01 100 chr7:138867140-138867486 1.07e-01 100 chr7:116778957-116779477 5.45e-01 100 chr20:10332948-10333303 9.14e-02 33_[+2(5.63e-05)]_56 chr1:177568224-177568562 2.88e-01 100 chr8:97855833-97856220 1.32e-01 12_[-2(8.52e-05)]_77 chr6:105335273-105335580 4.15e-05 37_[+1(9.82e-09)]_42 chr22:39638906-39639791 8.56e-04 23_[-3(2.40e-05)]_17_[+3(2.59e-07)]_\ 2 chr1:11919353-11919958 5.09e-01 100 chr6:4889913-4890442 1.17e-01 100 chr16:89103794-89104309 4.80e-01 100 chr1:188058348-188058969 2.69e-01 100 chr3:31183530-31183958 1.48e-02 22_[-2(9.23e-06)]_67 chr3:115978762-115979156 5.57e-02 35_[+2(1.32e-05)]_54 chr1:230562137-230562630 3.30e-04 10_[+3(7.53e-06)]_15_[+3(1.30e-07)]_\ 17 chr10:105038599-10503908 5.19e-01 100 chr11:66175933-66176508 9.88e-03 4_[+3(5.78e-06)]_67 chr3:164658699-164659601 8.84e-03 25_[+2(1.10e-06)]_64 chr13:53422688-53423033 3.75e-07 3_[-2(9.89e-06)]_22_[-3(1.18e-08)]_\ 35 chr19:34258812-34259136 5.16e-08 29_[-1(1.41e-11)]_50 chr14:57366562-57366970 3.73e-01 100 chr1:16867143-16867555 2.09e-01 100 chr11:63298741-63299362 1.52e-03 65_[-2(1.43e-06)]_24 chr18:44077506-44077759 9.82e-01 100 chr16:8396364-8396864 6.74e-01 100 chr11:69336331-69336688 4.06e-02 10_[-2(2.03e-05)]_79 chr1:95126989-95127305 3.86e-01 100 chr20:44660334-44660912 4.61e-04 6_[-3(2.90e-07)]_65 chr3:18385764-18386782 2.93e-01 100 chr11:22359772-22360450 9.51e-01 100 chr18:47087772-47088127 1.18e-02 69_[-3(2.08e-06)]_2 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: surya.stanford.edu ********************************************************************************