# DREME 4.12.0
#     command: dreme -v 1 -oc cutnotseq_memechip_out/dreme_out -png -dna -p cutnotseq_memechip_out/seqs-centered -n cutnotseq_memechip_out/seqs-shuffled
#   positives: 509 from cutnotseq_memechip_out/seqs-centered (Mon Oct 21 19:00:46 PDT 2019)
#   negatives: 509 from cutnotseq_memechip_out/seqs-shuffled (Mon Oct 21 19:00:46 PDT 2019)
#        host: surya.stanford.edu
#        when: Mon Oct 21 19:08:27 PDT 2019

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.271 C 0.232 G 0.239 T 0.258


MOTIF GGACAGCD DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GGACAGCD   HGCTGTCC         63          2   8.5e-018   2.5e-013
#         GGACAGCT   AGCTGTCC         26          1   1.5e-007   4.5e-003
#         GGACAGCG   CGCTGTCC         24          1   6.0e-007   1.8e-002
#         GGACAGCA   TGCTGTCC         16          0   1.4e-005   4.0e-001

letter-probability matrix: alength= 4 w= 8 nsites= 68 E= 2.5e-013
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.235294 0.000000 0.367647 0.397059


MOTIF GGTSCTGA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GGTSCTGA   TCAGSACC         72          5   1.3e-017   3.9e-013
#         GGTGCTGA   TCAGCACC         55          3   2.8e-014   8.2e-010
#         GGTCCTGA   TCAGGACC         17          2   3.3e-004   9.5e+000

letter-probability matrix: alength= 4 w= 8 nsites= 77 E= 3.9e-013
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.220779 0.779221 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF TATGYWAA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TATGYWAA   TTWRCATA         78         12   2.5e-014   7.4e-010
#         TATGCTAA   TTAGCATA         23          1   1.2e-006   3.4e-002
#         TATGCAAA   TTTGCATA         32          5   2.6e-006   7.5e-002
#         TATGTTAA   TTAACATA         15          3   3.5e-003   1.0e+002
#         TATGTAAA   TTTACATA         14          3   6.0e-003   1.7e+002

letter-probability matrix: alength= 4 w= 8 nsites= 89 E= 7.4e-010
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.651685 0.000000 0.348315
0.539326 0.000000 0.000000 0.460674
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 14.64 seconds