Invoking: getsize seqnotcut_memechip_out/seq-not-cut.fa 1> $metrics Finished invoke: name: count_seqs status: 0 time: 0.177738 Invoking: fasta-most -min 50 < seqnotcut_memechip_out/seq-not-cut.fa 1> $metrics Finished invoke: name: most_seqs status: 0 time: 0.119321 Invoking: fasta-center -dna -len 100 < seqnotcut_memechip_out/seq-not-cut.fa 1> seqnotcut_memechip_out/seqs-centered Finished invoke: name: center_seqs status: 0 time: 0.235361 Invoking: fasta-shuffle-letters seqnotcut_memechip_out/seqs-centered seqnotcut_memechip_out/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1 Finished invoke: name: shuffle_seqs status: 0 time: 0.123194 Invoking: fasta-subsample seqnotcut_memechip_out/seqs-centered 600 -rest seqnotcut_memechip_out/seqs-discarded -seed 1 1> seqnotcut_memechip_out/seqs-sampled Finished invoke: name: sample_seqs status: 0 time: 0.234872 Invoking: fasta-get-markov -nostatus -nosummary -dna -m 1 seqnotcut_memechip_out/seq-not-cut.fa seqnotcut_memechip_out/background Finished invoke: name: bg status: 0 time: 0.054831 Invoking: meme seqnotcut_memechip_out/seqs-sampled -oc seqnotcut_memechip_out/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile seqnotcut_memechip_out/background -dna -revcomp -nostatus Finished invoke: name: meme status: 0 time: 768.018157 Invoking: dreme -v 1 -oc seqnotcut_memechip_out/dreme_out -png -dna -p seqnotcut_memechip_out/seqs-centered -n seqnotcut_memechip_out/seqs-shuffled Finished invoke: name: dreme status: 0 time: 339.929056 Invoking: centrimo -seqlen 210 -verbosity 1 -oc seqnotcut_memechip_out/centrimo_out -bfile seqnotcut_memechip_out/background seqnotcut_memechip_out/seq-not-cut.fa seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/dreme_out/dreme.xml Finished invoke: name: centrimo status: 0 time: 0.906792 Invoking: tomtom -verbosity 1 -text -thresh 0.1 seqnotcut_memechip_out/combined.meme seqnotcut_memechip_out/combined.meme 1> seqnotcut_memechip_out/motif_alignment.txt Finished invoke: name: align status: 0 time: 0.624176 Invoking: spamo -verbosity 1 -oc seqnotcut_memechip_out/spamo_out_1 -bgfile seqnotcut_memechip_out/background -primary NATTTGCATRACAAWRR seqnotcut_memechip_out/seq-not-cut.fa seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo1 status: 0 time: 0.423003 Invoking: spamo -verbosity 1 -oc seqnotcut_memechip_out/spamo_out_2 -bgfile seqnotcut_memechip_out/background -primary ATGCGCAT seqnotcut_memechip_out/seq-not-cut.fa seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo2 status: 0 time: 1.464413 Invoking: spamo -verbosity 1 -oc seqnotcut_memechip_out/spamo_out_3 -bgfile seqnotcut_memechip_out/background -primary TRATCWRRRGGTCSYGGGTTCRAGTCCC seqnotcut_memechip_out/seq-not-cut.fa seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo3 status: 0 time: 0.478296 Invoking: spamo -verbosity 1 -oc seqnotcut_memechip_out/spamo_out_4 -bgfile seqnotcut_memechip_out/background -primary CMCAGS seqnotcut_memechip_out/seq-not-cut.fa seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo4 status: 0 time: 0.319893 Invoking: spamo -verbosity 1 -oc seqnotcut_memechip_out/spamo_out_5 -bgfile seqnotcut_memechip_out/background -primary CCTTTSW seqnotcut_memechip_out/seq-not-cut.fa seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo5 status: 0 time: 0.342938 Invoking: spamo -verbosity 1 -oc seqnotcut_memechip_out/spamo_out_6 -bgfile seqnotcut_memechip_out/background -primary CCCDCCCC seqnotcut_memechip_out/seq-not-cut.fa seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo6 status: 0 time: 0.287161 Invoking: spamo -verbosity 1 -oc seqnotcut_memechip_out/spamo_out_7 -bgfile seqnotcut_memechip_out/background -primary RCATTCCW seqnotcut_memechip_out/seq-not-cut.fa seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo7 status: 0 time: 0.33673 Invoking: spamo -verbosity 1 -oc seqnotcut_memechip_out/spamo_out_8 -bgfile seqnotcut_memechip_out/background -primary GGAGR seqnotcut_memechip_out/seq-not-cut.fa seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo8 status: 0 time: 0.264831 Invoking: spamo -verbosity 1 -oc seqnotcut_memechip_out/spamo_out_9 -bgfile seqnotcut_memechip_out/background -primary MATGAATA seqnotcut_memechip_out/seq-not-cut.fa seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo9 status: 0 time: 0.24574 Invoking: spamo -verbosity 1 -oc seqnotcut_memechip_out/spamo_out_10 -bgfile seqnotcut_memechip_out/background -primary AAAGARA seqnotcut_memechip_out/seq-not-cut.fa seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo10 status: 0 time: 0.343803 Invoking: spamo -verbosity 1 -oc seqnotcut_memechip_out/spamo_out_11 -bgfile seqnotcut_memechip_out/background -primary CAGYAGG seqnotcut_memechip_out/seq-not-cut.fa seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo11 status: 0 time: 0.265771 Invoking: spamo -verbosity 1 -oc seqnotcut_memechip_out/spamo_out_12 -bgfile seqnotcut_memechip_out/background -primary CACWGWG seqnotcut_memechip_out/seq-not-cut.fa seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo12 status: 0 time: 0.297181 Invoking: spamo -verbosity 1 -oc seqnotcut_memechip_out/spamo_out_13 -bgfile seqnotcut_memechip_out/background -primary CATTTAM seqnotcut_memechip_out/seq-not-cut.fa seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo13 status: 0 time: 0.306584 Invoking: spamo -verbosity 1 -oc seqnotcut_memechip_out/spamo_out_14 -bgfile seqnotcut_memechip_out/background -primary CCSCCBCYSNSYBCBSCSYYCCSSNBCCCS seqnotcut_memechip_out/seq-not-cut.fa seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo14 status: 0 time: 0.488644 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc seqnotcut_memechip_out/fimo_out_1 --bgfile seqnotcut_memechip_out/background --motif NATTTGCATRACAAWRR seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/seq-not-cut.fa Finished invoke: name: fimo1 status: 0 time: 0.650262 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc seqnotcut_memechip_out/fimo_out_2 --bgfile seqnotcut_memechip_out/background --motif ATGCGCAT seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/seq-not-cut.fa Finished invoke: name: fimo2 status: 0 time: 0.560665 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc seqnotcut_memechip_out/fimo_out_3 --bgfile seqnotcut_memechip_out/background --motif TRATCWRRRGGTCSYGGGTTCRAGTCCC seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/seq-not-cut.fa Finished invoke: name: fimo3 status: 0 time: 0.722948 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc seqnotcut_memechip_out/fimo_out_4 --bgfile seqnotcut_memechip_out/background --motif CMCAGS seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/seq-not-cut.fa Finished invoke: name: fimo4 status: 0 time: 0.539464 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc seqnotcut_memechip_out/fimo_out_5 --bgfile seqnotcut_memechip_out/background --motif CCTTTSW seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/seq-not-cut.fa Finished invoke: name: fimo5 status: 0 time: 0.818372 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc seqnotcut_memechip_out/fimo_out_6 --bgfile seqnotcut_memechip_out/background --motif CCCDCCCC seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/seq-not-cut.fa Finished invoke: name: fimo6 status: 0 time: 0.441435 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc seqnotcut_memechip_out/fimo_out_7 --bgfile seqnotcut_memechip_out/background --motif RCATTCCW seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/seq-not-cut.fa Finished invoke: name: fimo7 status: 0 time: 0.51768 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc seqnotcut_memechip_out/fimo_out_8 --bgfile seqnotcut_memechip_out/background --motif GGAGR seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/seq-not-cut.fa Finished invoke: name: fimo8 status: 0 time: 0.544884 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc seqnotcut_memechip_out/fimo_out_9 --bgfile seqnotcut_memechip_out/background --motif MATGAATA seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/seq-not-cut.fa Finished invoke: name: fimo9 status: 0 time: 0.489775 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc seqnotcut_memechip_out/fimo_out_10 --bgfile seqnotcut_memechip_out/background --motif AAAGARA seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/seq-not-cut.fa Finished invoke: name: fimo10 status: 0 time: 1.651574 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc seqnotcut_memechip_out/fimo_out_11 --bgfile seqnotcut_memechip_out/background --motif CAGYAGG seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/seq-not-cut.fa Finished invoke: name: fimo11 status: 0 time: 0.446239 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc seqnotcut_memechip_out/fimo_out_12 --bgfile seqnotcut_memechip_out/background --motif CACWGWG seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/seq-not-cut.fa Finished invoke: name: fimo12 status: 0 time: 0.524175 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc seqnotcut_memechip_out/fimo_out_13 --bgfile seqnotcut_memechip_out/background --motif CATTTAM seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/seq-not-cut.fa Finished invoke: name: fimo13 status: 0 time: 0.564991 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc seqnotcut_memechip_out/fimo_out_14 --bgfile seqnotcut_memechip_out/background --motif CCSCCBCYSNSYBCBSCSYYCCSSNBCCCS seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/seq-not-cut.fa Finished invoke: name: fimo14 status: 0 time: 0.67267 Writing output Invoking: meme-chip_html_to_tsv seqnotcut_memechip_out/meme-chip.html seqnotcut_memechip_out/summary.tsv Finished invoke: name: summary status: 0 time: 0.185152 Done