******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= cutnotseq_memechip_out/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr10:99834371-99834471 1.0000 100 chr2:116900381-116900481 1.0000 100 chr7:106771287-106771387 1.0000 100 chr17:33030640-33030740 1.0000 100 chr3:131080426-131080526 1.0000 100 chr10:111934091-11193419 1.0000 100 chr12:9939950-9940050 1.0000 100 chrX:51471365-51471465 1.0000 100 chr5:7261159-7261259 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1.0000 100 chr1:68759734-68759834 1.0000 100 chr11:62525427-62525527 1.0000 100 chr7:8483599-8483699 1.0000 100 chr15:59713185-59713285 1.0000 100 chr12:119195300-11919540 1.0000 100 chr20:50575533-50575633 1.0000 100 chr6:26199421-26199521 1.0000 100 chr2:171359320-171359420 1.0000 100 chr2:12395206-12395306 1.0000 100 chr13:28875817-28875917 1.0000 100 chr9:31259748-31259848 1.0000 100 chr16:23186017-23186117 1.0000 100 chr9:128844780-128844880 1.0000 100 chr4:26031840-26031940 1.0000 100 chr20:37309008-37309108 1.0000 100 chr14:55144084-55144184 1.0000 100 chr3:167172814-167172914 1.0000 100 chr11:88034210-88034310 1.0000 100 chr2:48921088-48921188 1.0000 100 chr14:96419518-96419618 1.0000 100 chr1:109768039-109768139 1.0000 100 chr10:125374432-12537453 1.0000 100 chr12:26265667-26265767 1.0000 100 chr13:88150794-88150894 1.0000 100 chr1:91391599-91391699 1.0000 100 chr8:142970680-142970780 1.0000 100 chr10:88616889-88616989 1.0000 100 chr10:53930448-53930548 1.0000 100 chr14:89444150-89444250 1.0000 100 chr4:34187806-34187906 1.0000 100 chr7:71310996-71311096 1.0000 100 chr8:95450378-95450478 1.0000 100 chr8:62662566-62662666 1.0000 100 chr11:14369549-14369649 1.0000 100 chr4:6157231-6157331 1.0000 100 chr1:82269602-82269702 1.0000 100 chr2:210170022-210170122 1.0000 100 chr13:20269684-20269784 1.0000 100 chr18:20749061-20749161 1.0000 100 chr6:71594723-71594823 1.0000 100 chr6:159274524-159274624 1.0000 100 chr4:134053063-134053163 1.0000 100 chr3:56145844-56145944 1.0000 100 chr21:35014106-35014206 1.0000 100 chr1:156736902-156737002 1.0000 100 chr7:113635207-113635307 1.0000 100 chr2:58194651-58194751 1.0000 100 chr7:142981617-142981717 1.0000 100 chr11:7566865-7566965 1.0000 100 chr6:21692120-21692220 1.0000 100 chr6:22250663-22250763 1.0000 100 chr11:40248191-40248291 1.0000 100 chr10:60966544-60966644 1.0000 100 chr1:44434035-44434135 1.0000 100 chr6:118180684-118180784 1.0000 100 chr3:104238308-104238408 1.0000 100 chr11:74944770-74944870 1.0000 100 chr2:85685949-85686049 1.0000 100 chr17:39136343-39136443 1.0000 100 chr5:9833079-9833179 1.0000 100 chr10:116678133-11667823 1.0000 100 chr3:105564362-105564462 1.0000 100 chr6:29634943-29635043 1.0000 100 chr10:91847480-91847580 1.0000 100 chr13:70197009-70197109 1.0000 100 chr2:210655867-210655967 1.0000 100 chr2:176717912-176718012 1.0000 100 chr13:51998760-51998860 1.0000 100 chr10:61899436-61899536 1.0000 100 chr16:11730077-11730177 1.0000 100 chr22:39638906-39639006 1.0000 100 chr8:118943042-118943142 1.0000 100 chr6:20868675-20868775 1.0000 100 chr3:156233027-156233127 1.0000 100 chr1:81778126-81778226 1.0000 100 chr6:158956886-158956986 1.0000 100 chr3:151110959-151111059 1.0000 100 chr3:185911920-185912020 1.0000 100 chr6:49879812-49879912 1.0000 100 chr5:98345740-98345840 1.0000 100 chr10:23460266-23460366 1.0000 100 chr13:74861045-74861145 1.0000 100 chr1:244067294-244067394 1.0000 100 chr2:171536840-171536940 1.0000 100 chr5:68390382-68390482 1.0000 100 chr8:26435242-26435342 1.0000 100 chr6:126072359-126072459 1.0000 100 chr11:40700776-40700876 1.0000 100 chr16:89103794-89103894 1.0000 100 chrX:8928869-8928969 1.0000 100 chr1:73452157-73452257 1.0000 100 chr3:71866447-71866547 1.0000 100 chr9:122133162-122133262 1.0000 100 chr12:76486224-76486324 1.0000 100 chr10:108294866-10829496 1.0000 100 chr2:63844746-63844846 1.0000 100 chrX:106027132-106027232 1.0000 100 chr18:45494472-45494572 1.0000 100 chr18:8006226-8006326 1.0000 100 chr3:187183282-187183382 1.0000 100 chr3:131424290-131424390 1.0000 100 chr1:147751685-147751785 1.0000 100 chr10:121890728-12189082 1.0000 100 chr12:119591432-11959153 1.0000 100 chr11:71162495-71162595 1.0000 100 chr11:83196185-83196285 1.0000 100 chr1:91390478-91390578 1.0000 100 chr15:89955993-89956093 1.0000 100 chr2:148206851-148206951 1.0000 100 chr13:81714736-81714836 1.0000 100 chr19:15126748-15126848 1.0000 100 chr6:81041447-81041547 1.0000 100 chr4:173672117-173672217 1.0000 100 chr17:65318234-65318334 1.0000 100 chr6:90377847-90377947 1.0000 100 chr1:68150672-68150772 1.0000 100 chr1:237195311-237195411 1.0000 100 chr11:23994806-23994906 1.0000 100 chr3:28119173-28119273 1.0000 100 chr2:85347002-85347102 1.0000 100 chr7:27960714-27960814 1.0000 100 chr2:162228329-162228429 1.0000 100 chr7:36320935-36321035 1.0000 100 chr12:107312592-10731269 1.0000 100 chr1:64982578-64982678 1.0000 100 chr16:89992506-89992606 1.0000 100 chr5:123774689-123774789 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme cutnotseq_memechip_out/seqs-sampled -oc cutnotseq_memechip_out/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile cutnotseq_memechip_out/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 590 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 59000 N= 590 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.280 C 0.220 G 0.220 T 0.280 Background letter frequencies (from cutnotseq_memechip_out/background): A 0.280 C 0.220 G 0.220 T 0.280 ******************************************************************************** ******************************************************************************** MOTIF GGHGCTGTCCATGGTGCTGAA MEME-1 width = 21 sites = 54 llr = 980 E-value = 1.5e-178 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGHGCTGTCCATGGTGCTGAA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1131::::::521::1::196 pos.-specific C :2319:2:aa11:1:2a:::2 probability G 85:7::81::2199:6::911 matrix T 1141:a:9::26::a1:a::1 bits 2.2 * 2.0 ** * * 1.7 ** ** ** *** 1.5 ** *** *** *** Relative 1.3 ****** *** *** Entropy 1.1 * ****** *** **** (26.2 bits) 0.9 * ****** *** **** 0.7 * ******* ******** 0.4 ** ******* ********* 0.2 ********************* 0.0 --------------------- Multilevel GGTGCTGTCCATGGTGCTGAA consensus CC C TA C sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGHGCTGTCCATGGTGCTGAA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chr16:1238741-1238841 - 60 1.22e-12 TGCTGCAGCG GCTGCTGTCCATGGTGCTGAA TCAGCAGCCT chr10:125374432-12537453 - 28 1.79e-12 AAGCAACAGG GGAGCTGTCCATGGTGCTGAC CACAACCCCA chr7:37092368-37092468 - 3 1.79e-11 CTGGGGGGTT GGTGCTCTCCTTGGTGCTGAA CG chr9:136474521-136474621 + 4 1.79e-11 TGG GGAGCTGTCCCTGGTGCTGAC GGCTCGTCCG chr14:82541942-82542042 - 29 2.25e-11 TGAACAGGCT GGTGCTGTCCAAGGTGCTGAG CAGGAGGTAA chr14:90961607-90961707 - 54 2.59e-11 AGATCACTGT GGTGCTCTCCATGGTCCTGAA CCTCACTAGT chr2:30142764-30142864 - 59 3.05e-11 CAGAGGCCCG GACGCTGTCCAGGGTGCTGAA GGGCGGCTCC chr1:44434035-44434135 - 73 7.65e-11 TAGGTCA GGAGCTGTCCCTGGTGCTGAT TGATCCCTGA chr10:104121510-10412161 + 54 7.65e-11 AACTCACAAA GCTGCTGTCCAAGGTGCTGAG CACTATAACT chr10:26656786-26656886 - 25 1.12e-10 GGGCCCGTGT GCCCCTGTCCTTGGTGCTGAA CCATCCCTTC chr18:44082230-44082330 - 36 1.28e-10 AGGGGCAAGA GGAGCTGTCCGTGGTTCTGAC TCCTTCTCTG chr11:74944770-74944870 - 12 2.20e-10 TGGCAGTCCT GGATCTGTCCGTGGTCCTGAA TGTCTTTTTC chr22:37040282-37040382 + 64 2.20e-10 GTAGTTGGAA GATGCTCTCCAAGGTGCTGAA GCAAGTGGGG chr1:175694842-175694942 - 37 2.20e-10 CCAGGCTTCA GGAACTGTCCTAGGTGCTGAA TATCCAGCAG chr15:83331940-83332040 - 27 2.77e-10 AGCCATGTGC CCCGCTGTCCATGGTGCTGAA ATGCGTGCTC chr19:15126748-15126848 + 68 3.09e-10 GGACTGGTGG AACGCTGTCCGTGGTGCTGAA CTGGACAGCT chr12:101220144-10122024 + 52 3.09e-10 CAGCGTGTTG GGTGCTGTCCATGGTACTGGA CCAGCGTTGC chr20:44669306-44669406 + 70 3.46e-10 GGCCCCCGAG ACCGCTGTCCACGGTGCTGAA ACACAGCATT chr9:34430770-34430870 + 33 3.46e-10 ACAAACAGGA GGAGCTCTCCAGGGTTCTGAA CCACCTCCCC chr1:155248041-155248141 + 2 4.39e-10 G GTCGCTGTCCCTAGTGCTGAA ggcgggggcg chr17:10778599-10778699 + 56 4.39e-10 TTTGAGGCCA GGAGCTCTCCAAGGTGCTGGA GAGAGGCCCA chr17:49946765-49946865 - 61 4.98e-10 GAGTCAAAAT GGCTCTGTCCAGGGTTCTGAA ACCTGCCTTC chr10:59935819-59935919 - 44 5.61e-10 AGATAGACAC AGTGCTGTCCTTGGTTCTGAA ACCACCATAC chr8:68772915-68773015 + 60 6.29e-10 AAAGAAAAAT GATGCTGTCCAGAGTGCTGAA AATGCTACTG chr4:153087708-153087808 - 58 6.29e-10 CCGCACGTGG GCTACTGTCCTTGGTCCTGAA CACAAACGTC chr2:166094641-166094741 - 26 6.29e-10 CTATTGCAGT AACGCTGTCCATGGTGCTGAG AACCAATTTT chr14:96419518-96419618 - 51 7.00e-10 AGAAGCAATA GTCGCTGTCCTTGGTACTGAC TGGTAAAGGA chr17:27332911-27333011 - 17 7.00e-10 GCCGTCGCCA GGCGCTGGCCGTGGTGCTGAT TCTGTCAGGC chr12:119195300-11919540 + 65 7.78e-10 AGGGCAGTGG GTTTCTGTCCAAGGTGCTGAC TTTTTGGCGc chr9:34493990-34494090 - 33 8.65e-10 AGCAGCCATG GGAACTCTCCGAGGTGCTGAA AACCAGCCCC chr1:204806611-204806711 + 19 8.65e-10 GAAGGAGCTT GTCGCTGTCCAGAGTGCTGAC CTGACCTGAG chr1:42276182-42276282 + 39 9.61e-10 GGAACCCCTT GGAGCTCTCCAAGGTACTGAC CCTCATTCCT chr1:21974459-21974559 - 16 1.07e-09 CCTAGCTGGA GCCGCTGTCCAAGGTGCTAAC CCTAGGCCCT chr2:200180089-200180189 + 44 1.18e-09 AAAGAGTGGG GTTCCTGTCCATGGTACTGAA ATGCCACTGC chr14:70519738-70519838 + 80 1.18e-09 AAAATGTCTG GGAGCTGTCCGTGGTGCTGTC chr18:44780979-44781079 + 14 1.18e-09 AACCCGGGTG GGAACTGTCCGCGGTGCTGAC GAGATGCATC chr12:108398219-10839831 - 52 1.32e-09 GGAAACACAT GTTGCTGTCCATGGTCCTAAA TAATCACTGA chr20:37309008-37309108 + 22 2.66e-09 GCGGACACTG TGAGCTGTCCAGGGTCCTGAG TATTCTGTTC chr10:106584190-10658429 + 73 2.66e-09 GGAGgtgctg agcgctgtcccaggtgctgga gatataa chr1:94236226-94236326 - 68 2.66e-09 GTGCTCCTGT GCTGCTGTCTGTGGTCCTGAA ATACAATTTG chr17:29721648-29721748 - 62 3.92e-09 AGTGCCTCGG GGCCCTGTCCATGGTCCTGCC CTGCAATGTT chr17:35054401-35054501 - 56 4.31e-09 CGGTGGTCTG AGAACTGTCCGTGGTTCTGAA GACCTATCCC chr3:191905281-191905381 - 41 5.17e-09 GCCTCTTCAG GAAGCTCTCCTTGGTCCTGAT TCTTATTCAA chr6:88829451-88829551 + 27 6.17e-09 GGTGACAGCT GTCGCTGTCCTTGGTACTAAA AAACATTCAA chr16:23186017-23186117 + 56 6.75e-09 AGAAACTATG GCTGCTGTCCGCAGTGCTGAT ATCTAAAGCC chr3:117041738-117041838 + 46 6.75e-09 CTATCTACAT GTTACTATCCATGGTGCTGAA TTATCTTGGG chr22:27373769-27373869 + 59 1.34e-08 ATGCTTTCAG TGGTCTGTCCAGGGTGCTGAA TTGGCACCGC chr8:62200374-62200474 - 25 6.69e-08 ATGTATTTCT GCAGGTGTCCTCGCTGCTGAA CTGGGTGGGT chr11:23994806-23994906 + 3 3.77e-07 tg agttctgtcctttgtcctgca cttgtgaata chr17:61600315-61600415 - 52 4.49e-07 GCCCGGGAGC TGTCCACGCCTTGGTGCTGAA AGAAGCCGCG chr3:62304554-62304654 + 64 5.94e-07 AATGTGATTT GGTTTTGTCTAAAGTGCTGAT AGTGGGCCTC chr11:70496213-70496313 + 30 1.18e-06 ACATGCTGAG GGCTTTCTCCAGACTCCTGAG GAAGGCTGCA chr10:121890728-12189082 - 19 1.37e-06 CTTGGAGCTG TCCCCTGGACCTAGTGCTGAA AAAGCAACTA chr12:57635426-57635526 + 56 1.37e-06 GGGGAGAACA GCCGCTCTCCCTGCTTCTCGG CATCCGCACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGHGCTGTCCATGGTGCTGAA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:1238741-1238841 1.2e-12 59_[-1]_20 chr10:125374432-12537453 1.8e-12 27_[-1]_52 chr7:37092368-37092468 1.8e-11 2_[-1]_77 chr9:136474521-136474621 1.8e-11 3_[+1]_76 chr14:82541942-82542042 2.3e-11 28_[-1]_51 chr14:90961607-90961707 2.6e-11 53_[-1]_26 chr2:30142764-30142864 3.1e-11 58_[-1]_21 chr1:44434035-44434135 7.6e-11 72_[-1]_7 chr10:104121510-10412161 7.6e-11 53_[+1]_26 chr10:26656786-26656886 1.1e-10 24_[-1]_55 chr18:44082230-44082330 1.3e-10 35_[-1]_44 chr11:74944770-74944870 2.2e-10 11_[-1]_68 chr22:37040282-37040382 2.2e-10 63_[+1]_16 chr1:175694842-175694942 2.2e-10 36_[-1]_43 chr15:83331940-83332040 2.8e-10 26_[-1]_53 chr19:15126748-15126848 3.1e-10 67_[+1]_12 chr12:101220144-10122024 3.1e-10 51_[+1]_28 chr20:44669306-44669406 3.5e-10 69_[+1]_10 chr9:34430770-34430870 3.5e-10 32_[+1]_47 chr1:155248041-155248141 4.4e-10 1_[+1]_78 chr17:10778599-10778699 4.4e-10 55_[+1]_24 chr17:49946765-49946865 5e-10 60_[-1]_19 chr10:59935819-59935919 5.6e-10 43_[-1]_36 chr8:68772915-68773015 6.3e-10 59_[+1]_20 chr4:153087708-153087808 6.3e-10 57_[-1]_22 chr2:166094641-166094741 6.3e-10 25_[-1]_54 chr14:96419518-96419618 7e-10 50_[-1]_29 chr17:27332911-27333011 7e-10 16_[-1]_63 chr12:119195300-11919540 7.8e-10 64_[+1]_15 chr9:34493990-34494090 8.7e-10 32_[-1]_47 chr1:204806611-204806711 8.7e-10 18_[+1]_61 chr1:42276182-42276282 9.6e-10 38_[+1]_41 chr1:21974459-21974559 1.1e-09 15_[-1]_64 chr2:200180089-200180189 1.2e-09 43_[+1]_36 chr14:70519738-70519838 1.2e-09 79_[+1] chr18:44780979-44781079 1.2e-09 13_[+1]_66 chr12:108398219-10839831 1.3e-09 51_[-1]_28 chr20:37309008-37309108 2.7e-09 21_[+1]_58 chr10:106584190-10658429 2.7e-09 72_[+1]_7 chr1:94236226-94236326 2.7e-09 67_[-1]_12 chr17:29721648-29721748 3.9e-09 61_[-1]_18 chr17:35054401-35054501 4.3e-09 55_[-1]_24 chr3:191905281-191905381 5.2e-09 40_[-1]_39 chr6:88829451-88829551 6.2e-09 26_[+1]_53 chr16:23186017-23186117 6.7e-09 55_[+1]_24 chr3:117041738-117041838 6.7e-09 45_[+1]_34 chr22:27373769-27373869 1.3e-08 58_[+1]_21 chr8:62200374-62200474 6.7e-08 24_[-1]_55 chr11:23994806-23994906 3.8e-07 2_[+1]_77 chr17:61600315-61600415 4.5e-07 51_[-1]_28 chr3:62304554-62304654 5.9e-07 63_[+1]_16 chr11:70496213-70496313 1.2e-06 29_[+1]_50 chr10:121890728-12189082 1.4e-06 18_[-1]_61 chr12:57635426-57635526 1.4e-06 55_[+1]_24 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGHGCTGTCCATGGTGCTGAA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGHGCTGTCCATGGTGCTGAA width=21 seqs=54 chr16:1238741-1238841 ( 60) GCTGCTGTCCATGGTGCTGAA 1 chr10:125374432-12537453 ( 28) GGAGCTGTCCATGGTGCTGAC 1 chr7:37092368-37092468 ( 3) GGTGCTCTCCTTGGTGCTGAA 1 chr9:136474521-136474621 ( 4) GGAGCTGTCCCTGGTGCTGAC 1 chr14:82541942-82542042 ( 29) GGTGCTGTCCAAGGTGCTGAG 1 chr14:90961607-90961707 ( 54) GGTGCTCTCCATGGTCCTGAA 1 chr2:30142764-30142864 ( 59) GACGCTGTCCAGGGTGCTGAA 1 chr1:44434035-44434135 ( 73) GGAGCTGTCCCTGGTGCTGAT 1 chr10:104121510-10412161 ( 54) GCTGCTGTCCAAGGTGCTGAG 1 chr10:26656786-26656886 ( 25) GCCCCTGTCCTTGGTGCTGAA 1 chr18:44082230-44082330 ( 36) GGAGCTGTCCGTGGTTCTGAC 1 chr11:74944770-74944870 ( 12) GGATCTGTCCGTGGTCCTGAA 1 chr22:37040282-37040382 ( 64) GATGCTCTCCAAGGTGCTGAA 1 chr1:175694842-175694942 ( 37) GGAACTGTCCTAGGTGCTGAA 1 chr15:83331940-83332040 ( 27) CCCGCTGTCCATGGTGCTGAA 1 chr19:15126748-15126848 ( 68) AACGCTGTCCGTGGTGCTGAA 1 chr12:101220144-10122024 ( 52) GGTGCTGTCCATGGTACTGGA 1 chr20:44669306-44669406 ( 70) ACCGCTGTCCACGGTGCTGAA 1 chr9:34430770-34430870 ( 33) GGAGCTCTCCAGGGTTCTGAA 1 chr1:155248041-155248141 ( 2) GTCGCTGTCCCTAGTGCTGAA 1 chr17:10778599-10778699 ( 56) GGAGCTCTCCAAGGTGCTGGA 1 chr17:49946765-49946865 ( 61) GGCTCTGTCCAGGGTTCTGAA 1 chr10:59935819-59935919 ( 44) AGTGCTGTCCTTGGTTCTGAA 1 chr8:68772915-68773015 ( 60) GATGCTGTCCAGAGTGCTGAA 1 chr4:153087708-153087808 ( 58) GCTACTGTCCTTGGTCCTGAA 1 chr2:166094641-166094741 ( 26) AACGCTGTCCATGGTGCTGAG 1 chr14:96419518-96419618 ( 51) GTCGCTGTCCTTGGTACTGAC 1 chr17:27332911-27333011 ( 17) GGCGCTGGCCGTGGTGCTGAT 1 chr12:119195300-11919540 ( 65) GTTTCTGTCCAAGGTGCTGAC 1 chr9:34493990-34494090 ( 33) GGAACTCTCCGAGGTGCTGAA 1 chr1:204806611-204806711 ( 19) GTCGCTGTCCAGAGTGCTGAC 1 chr1:42276182-42276282 ( 39) GGAGCTCTCCAAGGTACTGAC 1 chr1:21974459-21974559 ( 16) GCCGCTGTCCAAGGTGCTAAC 1 chr2:200180089-200180189 ( 44) GTTCCTGTCCATGGTACTGAA 1 chr14:70519738-70519838 ( 80) GGAGCTGTCCGTGGTGCTGTC 1 chr18:44780979-44781079 ( 14) GGAACTGTCCGCGGTGCTGAC 1 chr12:108398219-10839831 ( 52) GTTGCTGTCCATGGTCCTAAA 1 chr20:37309008-37309108 ( 22) TGAGCTGTCCAGGGTCCTGAG 1 chr10:106584190-10658429 ( 73) AGCGCTGTCCCAGGTGCTGGA 1 chr1:94236226-94236326 ( 68) GCTGCTGTCTGTGGTCCTGAA 1 chr17:29721648-29721748 ( 62) GGCCCTGTCCATGGTCCTGCC 1 chr17:35054401-35054501 ( 56) AGAACTGTCCGTGGTTCTGAA 1 chr3:191905281-191905381 ( 41) GAAGCTCTCCTTGGTCCTGAT 1 chr6:88829451-88829551 ( 27) GTCGCTGTCCTTGGTACTAAA 1 chr16:23186017-23186117 ( 56) GCTGCTGTCCGCAGTGCTGAT 1 chr3:117041738-117041838 ( 46) GTTACTATCCATGGTGCTGAA 1 chr22:27373769-27373869 ( 59) TGGTCTGTCCAGGGTGCTGAA 1 chr8:62200374-62200474 ( 25) GCAGGTGTCCTCGCTGCTGAA 1 chr11:23994806-23994906 ( 3) AGTTCTGTCCTTTGTCCTGCA 1 chr17:61600315-61600415 ( 52) TGTCCACGCCTTGGTGCTGAA 1 chr3:62304554-62304654 ( 64) GGTTTTGTCTAAAGTGCTGAT 1 chr11:70496213-70496313 ( 30) GGCTTTCTCCAGACTCCTGAG 1 chr10:121890728-12189082 ( 19) TCCCCTGGACCTAGTGCTGAA 1 chr12:57635426-57635526 ( 56) GCCGCTCTCCCTGCTTCTCGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGHGCTGTCCATGGTGCTGAA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 47200 bayes= 11.4216 E= 1.5e-178 -111 -357 182 -192 -133 2 124 -92 8 60 -357 33 -133 -125 160 -111 -1240 210 -357 -292 -392 -1240 -1240 181 -392 -11 182 -1240 -1240 -1240 -198 175 -392 216 -1240 -1240 -1240 213 -1240 -292 83 -98 -25 -46 -46 -157 -57 103 -111 -1240 195 -392 -1240 -198 210 -1240 -1240 -1240 -1240 183 -160 -25 148 -133 -1240 219 -1240 -1240 -1240 -1240 -1240 183 -233 -357 208 -1240 163 -257 -157 -392 108 -11 -98 -160 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGHGCTGTCCATGGTGCTGAA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 54 E= 1.5e-178 0.129630 0.018519 0.777778 0.074074 0.111111 0.222222 0.518519 0.148148 0.296296 0.333333 0.018519 0.351852 0.111111 0.092593 0.666667 0.129630 0.000000 0.944444 0.018519 0.037037 0.018519 0.000000 0.000000 0.981481 0.018519 0.203704 0.777778 0.000000 0.000000 0.000000 0.055556 0.944444 0.018519 0.981481 0.000000 0.000000 0.000000 0.962963 0.000000 0.037037 0.500000 0.111111 0.185185 0.203704 0.203704 0.074074 0.148148 0.574074 0.129630 0.000000 0.851852 0.018519 0.000000 0.055556 0.944444 0.000000 0.000000 0.000000 0.000000 1.000000 0.092593 0.185185 0.611111 0.111111 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.055556 0.018519 0.925926 0.000000 0.870370 0.037037 0.074074 0.018519 0.592593 0.203704 0.111111 0.092593 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGHGCTGTCCATGGTGCTGAA MEME-1 regular expression -------------------------------------------------------------------------------- G[GC][TCA]GCT[GC]TCC[AT][TA]GGTGCTGA[AC] -------------------------------------------------------------------------------- Time 294.23 secs. ******************************************************************************** ******************************************************************************** MOTIF YTTTNWTATGCAAAT MEME-2 width = 15 sites = 163 llr = 1537 E-value = 9.7e-106 ******************************************************************************** -------------------------------------------------------------------------------- Motif YTTTNWTATGCAAAT MEME-2 Description -------------------------------------------------------------------------------- Simplified A 2322242a:::78a1 pos.-specific C 21:13:1:::7:::: probability G 111131:::a::1:: matrix T 5565258:a:33::8 bits 2.2 * 2.0 * 1.7 *** * 1.5 *** * Relative 1.3 *** * Entropy 1.1 *** ** (13.6 bits) 0.9 ********* 0.7 ********* 0.4 * ********** 0.2 **** ********** 0.0 --------------- Multilevel TTTTGTTATGCAAAT consensus CAAACA TT sequence A T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTTTNWTATGCAAAT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------- chr17:35088151-35088251 - 64 2.47e-09 CCCGAGCCAA TTTTGTTATGCAAAT GAATTCAGCC chr3:37343494-37343594 + 31 2.47e-09 GATGATGCAG TTTTGTTATGCAAAT GTTTTAGAGT chr4:161513460-161513560 - 3 1.57e-08 CTGTAATTTT CTTTCTTATGCAAAT TT chrX:16596981-16597081 + 48 2.58e-08 gagttgtttc ctttcatatgcaaat ttaaagctat chr4:81417065-81417165 + 61 4.37e-08 gttgcctttt tttagttatgcaaat ttctccagca chr11:69336331-69336431 + 5 4.37e-08 tcct tttagttatgcaaat atctctagca chr5:11650924-11651024 - 44 6.17e-08 TTGGCTTCTC TTTACTTATGCAAAT TTCTGCAGCT chr13:82233113-82233213 + 65 6.17e-08 tagcctttcc ttttattatgcaaat gtgacctcta chr10:99239630-99239730 - 43 7.42e-08 TACCCGAGCC TTTTAATATGCAAAT GCAGGGCACC chr11:14369549-14369649 - 12 1.11e-07 GTTTGTTTTA CTTTGTTATGCTAAT GAGATCTTGT chr9:37339782-37339882 - 32 1.42e-07 TCTAACAGTA ATTTTTTATGCAAAT GAACCTGCTG chr5:97712414-97712514 - 50 1.42e-07 GAATGTCTTA AATTGTTATGCAAAT TATTATGCAA chr12:119423529-11942362 - 70 1.88e-07 ATCCATAAAC AATTGATATGCAAAT TTCAAATGAT chr16:79087556-79087656 + 1 1.88e-07 . TATAGTTATGCAAAT GAAAACCATT chr18:72511985-72512085 + 12 2.44e-07 GTAGTTTTGT TATTCTTATGCTAAT TTTGTGCATT chr5:105590426-105590526 - 14 3.06e-07 TTGAATTCCC TTTAATTATGCAAAT TTCTGCAGCC chr17:42588811-42588911 + 13 3.73e-07 ggccagcaac ctttgatatgtaaat gcaggtcatc chr8:89895559-89895659 + 77 3.73e-07 ttactaggtc ttaagttatgcaaat gttcagatt chrX:99302968-99303068 - 20 3.73e-07 AGGTCGTTTC TTTGTTTATGCAAAT GAGCATAGGC chr17:65318234-65318334 - 12 4.53e-07 CCCACCCTAA TCTTATTATGCAAAT AGGATCTTTG chr4:96292651-96292751 + 46 4.53e-07 agcttcaaag tattgttatgtaaat taaataagtt chr5:120187802-120187902 - 24 5.42e-07 ATGTACTGAC TTTGCTTATGCTAAT TATGGGCAAG chr14:97848893-97848993 - 64 6.54e-07 AATACCAGAA CTATTTTATGCAAAT TCCACTTAGA chr6:170894339-170894439 - 9 7.91e-07 ACAACCACGG TCTTGTTATGTAAAT GAAACCTC chr3:98441246-98441346 + 24 7.91e-07 TTACCTGGTT CTTTAATATGCTAAT ATGTACTGAA chr3:167172814-167172914 + 81 9.45e-07 AATGGAATTT TTAGCATATGCAAAT AATAT chr11:40700776-40700876 - 64 1.13e-06 TCCGCTCCTC GTTACTTATGCAAAT TTCTGCACCT chr22:28274601-28274701 - 66 1.13e-06 ATTAGCATAA TAATTATATGCAAAT GAATGCTTCT chr18:59283426-59283526 - 19 1.13e-06 ATAAAGCTTC TGTTGTTATGCTAAT GTGCCCTGAG chr18:40125141-40125241 + 36 1.13e-06 TATTGACTTC ATTTGTTATGCAAAA TAATGATTTT chr5:12332397-12332497 + 7 1.34e-06 agattc tttacaaatgcaaat ttacccccca chr6:118180684-118180784 + 46 1.58e-06 aaaaaggtgg ccttgttatgtaaat aaagccccTT chr20:1986514-1986614 - 71 1.58e-06 AGAGTATTAG ATAACATATGCAAAT ACACAGCATA chr9:99982325-99982425 - 34 1.85e-06 GACTGAAATT TTTACATATGCAAAA TGAGAAAAGT chr19:13763594-13763694 - 6 2.17e-06 CACCCTAATG TTTTATTATGCAGAT GGGTT chr19:51094863-51094963 + 70 2.17e-06 cgagggaatc ttttattatgcagat gggctctcta chr6:88829451-88829551 + 71 2.17e-06 CTCTTCTTTT TTTTCTTATGCAAAC TAGGAACATT chr21:17131791-17131891 + 38 2.17e-06 gagacctagg ttttatcatgcaaat gaagcctcca chr8:26435242-26435342 - 1 2.52e-06 GGCCGCGATC CTGGGATATGCAAAT chr4:85487088-85487188 - 54 2.52e-06 AAGCTAGAAG CTTGCATATGTAAAT GTCGGCAGGT chr11:27494222-27494322 + 20 2.52e-06 CCCCCGGCCG CTGGCTTATGCAAAT CACTTAGGTA chr20:50575533-50575633 + 54 2.91e-06 GCTGTTCATC CTTTGATATGCACAT CTGGATCTGT chr2:171359320-171359420 + 47 3.35e-06 GAAAGAGTGC TATTAAAATGCAAAT GTTAACTTTT chr3:193065823-193065923 - 15 3.35e-06 TGCTGAATAA TAACGATATGCAAAT TCATCTTGGA chr10:7474469-7474569 + 1 3.86e-06 . TTTGCATATGTTAAT TATTTCTTTC chrX:51471365-51471465 + 30 3.86e-06 TTTGCATAAT CTTACttatgttaat atggttagga chr5:12175728-12175828 - 10 4.47e-06 ATCTAATCCC TTTCTATATGTAAAT AGTTTCAAT chr6:52054749-52054849 + 36 4.47e-06 CCCTATTGGG AAGAGTTATGCAAAT TCTCCTATAA chr17:9012936-9013036 - 80 4.47e-06 AATAAT CAGACATATGCAAAT TAAATCAACA chr16:74135343-74135443 - 45 4.47e-06 TGGGTTTTTC CTTTCACATGCTAAT CACCTGCTCC chr3:167185255-167185355 - 67 4.47e-06 TATCACATGC TCACGTTATGCAAAT AAGATTCTAA chr6:81041447-81041547 - 58 5.13e-06 TCTTTAGGTT TCTTCAAATGCTAAT TATGTAGCAA chr6:21692120-21692220 - 2 5.13e-06 AAAAAAGTCT TTAAGTTATGCAAAA A chr6:26199421-26199521 - 82 5.13e-06 TGCC CTGTGGTATGCAAAT TAGGTGATTC chr20:23495962-23496062 + 82 5.13e-06 GTTTGCATTC TTAACAAATGCAAAT TCTT chr2:85685949-85686049 - 45 5.88e-06 ACCTTTTTGT TGTTGTTATGTTAAT TTTTACGTAG chr2:84160894-84160994 - 54 5.88e-06 TCCTGCTCCC TAATGTTATGCAGAT TAGTGCCTGG chr16:62259700-62259800 - 5 6.67e-06 GCTGGTGGGT GTGTCTTATGCTAAT GAGC chr10:52378861-52378961 - 17 6.67e-06 CATTAGAGCT TTTTATTATGGAAAT TTGCAGGCAT chr2:175788826-175788926 - 12 7.55e-06 AGAGTACATC TTTACATATGGAAAT TTTCTTTACA chr2:194714056-194714156 + 21 7.55e-06 tccaggaaga cattgttatgcatat tttagagcaa chr12:133424122-13342422 + 37 7.55e-06 ATGCGCATGT TAAACATATGTAAAT CCTAGAAACC chr6:129275817-129275917 + 55 7.55e-06 AAGAACTCCC CATATATATGTAAAT TTCAGCAGTG chrX:39473122-39473222 + 30 8.51e-06 ctgggagctt gttagaaatgcaaat ctcgggcccg chr17:25672483-25672583 + 85 9.62e-06 caccctgatc ttttattatgtagat g chr4:16898880-16898980 - 46 9.62e-06 CTTTCAGAAC TTTTTAAATGCAAAA CTCCAGACTC chr6:20868675-20868775 - 50 1.09e-05 CAGGTGCAAC TCTTTTTATGCTAAA AATAAGCCAA chr2:210655867-210655967 + 10 1.09e-05 CCACATAAG GCATTTTATGCAAAT GCCATCTTTT chr21:44377036-44377136 + 80 1.09e-05 caaatgccct attgtttatgcaaaa atgtag chr9:87829081-87829181 + 6 1.23e-05 atttt gatgcatatgctaat tccagctgta chr17:61059466-61059566 + 80 1.23e-05 taccaatact atttctaatgttaat tcttgg chr8:48436676-48436776 - 68 1.23e-05 CAATGACAGT ACTTTTTATGTTAAT TCTTAGTTTG chr18:72449083-72449183 - 74 1.23e-05 CCAACAGTGC TAAAGATATGCAAAA TTTTCATTCT chr7:7937057-7937157 + 23 1.23e-05 tatgtaaggt aatacatatgttaat tagctccatg chr3:123603260-123603360 - 7 1.23e-05 AGCGCTATGC AAATGTCATGCAAAT CAGTGC chr2:63844746-63844846 + 32 1.38e-05 gttctgaacc ccttcatatGCATAT ATGTACACAT chr4:34187806-34187906 + 47 1.38e-05 ggatgtgcat aggttatatgcaaat aatattacat chr8:82740393-82740493 + 25 1.38e-05 GATTATTATG TTAAATTATGCAAAA CTTTTGGGTA chr12:19441152-19441252 + 42 1.38e-05 ATTTCATTGT CAGTGTTATGTTAAT TGGAAAGGAG chr12:71594855-71594955 + 79 1.55e-05 ggatactcaa aaggtatatgcaaat ttttgac chr14:89318094-89318194 - 9 1.55e-05 AGGGGAGATC TTTAAATATGCAAAC TACTTATA chr1:68150672-68150772 - 15 1.73e-05 AGCTTGGCCA TTGGGCTATGCAAAT CAGCCTGCTC chr12:65017872-65017972 - 58 1.73e-05 AAGCAAGATG CATTGTAATGTTAAT TTTAAAACTG chr1:80623611-80623711 - 76 1.73e-05 GCAAAGGTGG CCTTGTTATGTAGAT GAAGCCTTTT chr13:30414860-30414960 - 46 1.73e-05 ATTATGAACA TCTATCTATGCAAAT AAGTATAGAA chr14:57363761-57363861 - 47 1.73e-05 ACATTTCTGC AATGCATATGCAGAT TTTGCCTCTT chr11:88034210-88034310 - 13 1.92e-05 TACCTGGTGT ATGCCTTATGTAAAT GAAGAGGGTG chr1:232260826-232260926 + 53 1.92e-05 acttttcatc ttttgtaatgtagat gtttacctgt chr2:171536840-171536940 - 59 2.13e-05 CAACCATTTT TCTATAAATGCTAAT GGAGGTAATT chr14:55144084-55144184 + 50 2.13e-05 ATTTCAGAGG CTTTGTAATGGAAAT CGTAGTTCCA chr14:67735183-67735283 - 29 2.37e-05 TGCTCACTGC TCACTATATGCTAAT TATAATGCGT chr7:117314720-117314820 - 62 2.37e-05 AACATTGCTT GGTTCAAATGCAAAT GCTTGGTGTG chr4:75588745-75588845 - 51 2.37e-05 TTAACTATTC ACTCTTTATGTAAAT TGACCTCCTT chr5:34475095-34475195 + 81 2.63e-05 ccagtttttc gcaccttatgcaaat gacac chr9:30630385-30630485 + 23 2.63e-05 TGTTTCAGGT ACACAATATGCAAAT ACCTTTCTAT chr6:87825195-87825295 + 19 2.63e-05 cctttacatc cttgaatatgcacat aatttactat chr16:11730077-11730177 - 37 2.91e-05 CCAGTTCTTC ACGTGCTATGCAAAT AGCACACCTG chr11:64085282-64085382 + 63 2.91e-05 CCGCACCTCA TTCCTATATGCAAAT TAGCTGCTCC chr11:7566865-7566965 + 46 3.22e-05 CAACCTTACT CAGCTTTATGCTAAT GAGGCCACTC chr11:69453708-69453808 + 54 3.22e-05 CGCGCCCCCA TTGGCTCATGCTAAT TCCAGTTTCC chr7:128810183-128810283 + 31 3.22e-05 ggttatttct tgatgatatgctaaa caaggggtgg chr3:192162567-192162667 + 79 3.22e-05 AAAAAAGAGC ACTAATTATGCAGAT TGCATTC chr1:196419309-196419409 + 35 3.22e-05 ttttagtgat cattcatatgttgat gattaccaaa chr11:40248191-40248291 + 77 3.55e-05 ATATCGCATA TATACATATGTACAT ATACAAGCT chr6:21399239-21399339 - 17 3.55e-05 TGGGAGTGTC TTTTAGCATGCTAAT GTATTGTAAT chr10:110357903-11035800 - 3 3.55e-05 GACTCCTCTA CATTCCTATGTTAAT TA chrX:106027132-106027232 + 39 3.90e-05 CCTCTACTTC AATTCATATGTATAT TATATTCACT chr8:62662566-62662666 + 39 3.90e-05 gggtcacacc tgactttatgctaat gagatgactc chrX:150645144-150645244 - 49 3.90e-05 AGAGCACTAA TCAACATATGCACAT AATAAAACTA chr4:40752935-40753035 - 69 3.90e-05 TGCAATTAAC CAAAGATATGCACAT GCCTAAAACC chr4:134018207-134018307 + 74 3.90e-05 ctcgttgttt ctttcttatgaaaat gtaggggcca chr2:174662584-174662684 + 6 3.90e-05 GAGTC TTTAGTCATGCATAT ATGATGCATA chr10:121890728-12189082 - 69 4.29e-05 TGTTCAACAC CAAGCTAATGCTAAT GGATCTCAGT chr2:12395206-12395306 + 11 4.29e-05 ACATCAACAC AAATGGAATGCAAAT TGTCTTTTCA chr16:73081867-73081967 + 18 4.29e-05 CCGCCCGGAA TCGCTTTATGTAAAT GAAGCCCAAC chr13:70197009-70197109 - 33 4.70e-05 AAAAATTTCA TACTCTTATGTTAAT TTTCCTTAGA chr7:67382203-67382303 - 7 4.70e-05 TTATCATTTT TATACAAATGCTAAA ACAATT chr2:163933792-163933892 + 65 4.70e-05 CATCAGATTT CTTTGAAATGGTAAT TAGCCAGCCA chr11:94383101-94383201 - 62 4.70e-05 CACTTGGTGA ATATTCTATGTAAAT GAAGTGAATA chr6:42747104-42747204 + 25 4.70e-05 ATCAGGTGTA GAAAAATATGCTAAT TTATGCAAAG chr9:138541401-138541501 - 23 4.70e-05 AAAAGGCAAG GTCTGTTATGTAAAT GAAGCCATTG chr12:9939950-9940050 + 62 4.70e-05 ccactccttc tttttacatgtaaaa tgtagattca chr1:209304394-209304494 - 12 5.15e-05 TTAAGATCTC TGTTTTAATGTTAAT GCTGCTCAGT chr13:89416391-89416491 + 47 5.15e-05 gtttacagct ctttagaatgtaaat gaattacttt chr5:150767555-150767655 - 68 5.15e-05 AGACCAAGGT TCTTATCATGCAGAT GAAGCCTCCT chr3:156035574-156035674 - 2 5.15e-05 GCTTTAATGG AAGCAATATGCTAAT A chr10:111934091-11193419 + 67 5.15e-05 attatacaat gtaatatatgcaaaa gtgctttgta chr3:79252005-79252105 - 16 5.62e-05 AACTAAAGCA ATTGAGAATGCAAAT GAGAATTACA chr4:40121038-40121138 - 1 5.62e-05 TTTACATAGC TAAGCATATGTAAAA chr7:142981617-142981717 - 47 6.15e-05 CTCTCGGCGC ATATTGTATGTTAAT TACAGCCCTG chr1:91391599-91391699 + 12 6.15e-05 ctgtttcacc ttttgacatgtaaac cttaatttta chr5:109075400-109075500 - 64 6.15e-05 AAGCCCTGGG AAATAATATGCTGAT TAACTGAGCT chr1:6112407-6112507 - 59 6.15e-05 TTGCATGGAA CGTATTTATGCTAAA AAGTTACGCG chr12:118558326-11855842 + 3 6.15e-05 gt ctttgaaatgtgaat gagcctgaca chr3:100452549-100452649 - 81 7.31e-05 ACCTC ACTGAATATGCACAT AGTTTACTAT chr20:24443118-24443218 - 39 7.31e-05 TTCCCTGGGC AGTTGTCATGCAGAT CAGCACTGGC chr6:106201447-106201547 - 43 7.95e-05 AGCCCACAGT CTGCATAATGCTAAT TAAGTTTTCA chr4:26031840-26031940 - 42 8.63e-05 TCATTCAAAA TAAGGTTATGCAGAA AGTTCCTGCC chr12:96005625-96005725 + 80 8.63e-05 TTTTCTCATT TTAATGAATGCTAAT CAGCTG chr6:50526235-50526335 + 70 8.63e-05 TAGGAATTAT TTTCCATATGGAGAT TCAGTAAATG chr19:7813530-7813630 + 41 8.63e-05 taatggtaac atttcacatGGTAAt gaggtaggaa chr6:90377847-90377947 - 63 9.36e-05 CTACAAAGTC AAGTCATATGTTAAA TCTGATGTCA chr3:185911920-185912020 + 23 9.36e-05 AGGCAAAGCA CATTTATGTGCAAAT GAGACGCGCT chr1:178235363-178235463 - 15 9.36e-05 CCAAATGTCC ATTTAACATGTAAAA AGATGCTCAA chrX:16331024-16331124 - 20 9.36e-05 TCCAGAGGTT ATAAGATATGCAACT TCCCTAATTA chr12:125115633-12511573 - 41 1.01e-04 GGTGATTTCT TGACGATATGCTAAA CAAGGGGTGG chr3:45742766-45742866 + 59 1.01e-04 CGGTAGCCTT TTGGTAAATGTTAAT GGCTTACACT chr4:184039339-184039439 - 22 1.01e-04 GACAAAAGAT TTTTCACATGCATAA TCTAGGCATT chr3:137486501-137486601 - 15 1.10e-04 TGTAAAAGGG TTTTGTAATGCTAAG TAAGCGTGGC chr10:61899436-61899536 + 42 1.18e-04 ACTTTTACCA GCTACGTATGCAAAA CATGACATCA chr12:59730685-59730785 - 54 1.18e-04 GCATTGAGTC TTTGGATATGTGAAA TTATGCACAG chr13:58246333-58246433 + 79 1.18e-04 TGAGGGCAGT ATTTGTTATGTAATT TCGCAGT chr7:14025342-14025442 - 24 1.18e-04 GTTATATCTT TTATCGTATGCAACT TTATAGGAAA chr18:8006226-8006326 - 60 1.28e-04 CCTGCTAAAC ATTTATTATGCGAAC AGGGCCACTG chr13:68315438-68315538 - 32 1.38e-04 GGTTATTTCT TGATTATATGTTAAA CAAGGAGTAG chr9:79085761-79085861 + 68 1.38e-04 catttctcac atctgttatgctaac caacacagtc chr2:192765776-192765876 + 7 1.48e-04 aacaag gagtcaaatgttaat caccaagaca chr7:113635207-113635307 - 22 2.11e-04 TGTGATGCAT CATATTTATGCGCAT ATATTCAATC chr8:106664092-106664192 - 31 2.11e-04 GCAGCATAAT ATATGCTATGTATAT ATGCAACATT chr13:100544512-10054461 - 29 2.26e-04 AACAATGGCT GGTTGTTATGTTTAT TTACCCTTAC chr12:66155132-66155232 - 75 2.26e-04 AGATTCCAGA ATGTTGTATGCTAAC GAGGTCTTCA chr10:70738071-70738171 + 17 2.26e-04 GTAGCCCAAA CATATATATGCGCAT AAATGCATAT chr4:28437830-28437930 + 22 2.58e-04 ctatcattta cgtaaaaatgcatat tcagtgagtc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTTTNWTATGCAAAT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:35088151-35088251 2.5e-09 63_[-2]_22 chr3:37343494-37343594 2.5e-09 30_[+2]_55 chr4:161513460-161513560 1.6e-08 2_[-2]_83 chrX:16596981-16597081 2.6e-08 47_[+2]_38 chr4:81417065-81417165 4.4e-08 60_[+2]_25 chr11:69336331-69336431 4.4e-08 4_[+2]_81 chr5:11650924-11651024 6.2e-08 43_[-2]_42 chr13:82233113-82233213 6.2e-08 64_[+2]_21 chr10:99239630-99239730 7.4e-08 42_[-2]_43 chr11:14369549-14369649 1.1e-07 11_[-2]_74 chr9:37339782-37339882 1.4e-07 31_[-2]_54 chr5:97712414-97712514 1.4e-07 49_[-2]_36 chr12:119423529-11942362 1.9e-07 69_[-2]_16 chr16:79087556-79087656 1.9e-07 [+2]_85 chr18:72511985-72512085 2.4e-07 11_[+2]_74 chr5:105590426-105590526 3.1e-07 13_[-2]_72 chr17:42588811-42588911 3.7e-07 12_[+2]_73 chr8:89895559-89895659 3.7e-07 76_[+2]_9 chrX:99302968-99303068 3.7e-07 19_[-2]_66 chr17:65318234-65318334 4.5e-07 11_[-2]_74 chr4:96292651-96292751 4.5e-07 45_[+2]_40 chr5:120187802-120187902 5.4e-07 23_[-2]_62 chr14:97848893-97848993 6.5e-07 63_[-2]_22 chr6:170894339-170894439 7.9e-07 8_[-2]_77 chr3:98441246-98441346 7.9e-07 23_[+2]_62 chr3:167172814-167172914 9.5e-07 80_[+2]_5 chr11:40700776-40700876 1.1e-06 63_[-2]_22 chr22:28274601-28274701 1.1e-06 65_[-2]_20 chr18:59283426-59283526 1.1e-06 18_[-2]_67 chr18:40125141-40125241 1.1e-06 35_[+2]_50 chr5:12332397-12332497 1.3e-06 6_[+2]_79 chr6:118180684-118180784 1.6e-06 45_[+2]_40 chr20:1986514-1986614 1.6e-06 70_[-2]_15 chr9:99982325-99982425 1.9e-06 33_[-2]_52 chr19:13763594-13763694 2.2e-06 5_[-2]_80 chr19:51094863-51094963 2.2e-06 69_[+2]_16 chr6:88829451-88829551 2.2e-06 70_[+2]_15 chr21:17131791-17131891 2.2e-06 37_[+2]_48 chr8:26435242-26435342 2.5e-06 [-2]_85 chr4:85487088-85487188 2.5e-06 53_[-2]_32 chr11:27494222-27494322 2.5e-06 19_[+2]_66 chr20:50575533-50575633 2.9e-06 53_[+2]_32 chr2:171359320-171359420 3.4e-06 46_[+2]_39 chr3:193065823-193065923 3.4e-06 14_[-2]_71 chr10:7474469-7474569 3.9e-06 [+2]_85 chrX:51471365-51471465 3.9e-06 29_[+2]_56 chr5:12175728-12175828 4.5e-06 9_[-2]_76 chr6:52054749-52054849 4.5e-06 35_[+2]_50 chr17:9012936-9013036 4.5e-06 79_[-2]_6 chr16:74135343-74135443 4.5e-06 44_[-2]_41 chr3:167185255-167185355 4.5e-06 66_[-2]_19 chr6:81041447-81041547 5.1e-06 57_[-2]_28 chr6:21692120-21692220 5.1e-06 1_[-2]_84 chr6:26199421-26199521 5.1e-06 81_[-2]_4 chr20:23495962-23496062 5.1e-06 81_[+2]_4 chr2:85685949-85686049 5.9e-06 44_[-2]_41 chr2:84160894-84160994 5.9e-06 53_[-2]_32 chr16:62259700-62259800 6.7e-06 4_[-2]_81 chr10:52378861-52378961 6.7e-06 16_[-2]_69 chr2:175788826-175788926 7.6e-06 11_[-2]_74 chr2:194714056-194714156 7.6e-06 20_[+2]_65 chr12:133424122-13342422 7.6e-06 36_[+2]_49 chr6:129275817-129275917 7.6e-06 54_[+2]_31 chrX:39473122-39473222 8.5e-06 29_[+2]_56 chr17:25672483-25672583 9.6e-06 84_[+2]_1 chr4:16898880-16898980 9.6e-06 45_[-2]_40 chr6:20868675-20868775 1.1e-05 49_[-2]_36 chr2:210655867-210655967 1.1e-05 9_[+2]_76 chr21:44377036-44377136 1.1e-05 79_[+2]_6 chr9:87829081-87829181 1.2e-05 5_[+2]_80 chr17:61059466-61059566 1.2e-05 79_[+2]_6 chr8:48436676-48436776 1.2e-05 67_[-2]_18 chr18:72449083-72449183 1.2e-05 73_[-2]_12 chr7:7937057-7937157 1.2e-05 22_[+2]_63 chr3:123603260-123603360 1.2e-05 6_[-2]_79 chr2:63844746-63844846 1.4e-05 31_[+2]_54 chr4:34187806-34187906 1.4e-05 46_[+2]_39 chr8:82740393-82740493 1.4e-05 24_[+2]_61 chr12:19441152-19441252 1.4e-05 41_[+2]_44 chr12:71594855-71594955 1.5e-05 78_[+2]_7 chr14:89318094-89318194 1.5e-05 8_[-2]_77 chr1:68150672-68150772 1.7e-05 14_[-2]_71 chr12:65017872-65017972 1.7e-05 57_[-2]_28 chr1:80623611-80623711 1.7e-05 75_[-2]_10 chr13:30414860-30414960 1.7e-05 45_[-2]_40 chr14:57363761-57363861 1.7e-05 46_[-2]_39 chr11:88034210-88034310 1.9e-05 12_[-2]_73 chr1:232260826-232260926 1.9e-05 52_[+2]_33 chr2:171536840-171536940 2.1e-05 58_[-2]_27 chr14:55144084-55144184 2.1e-05 49_[+2]_36 chr14:67735183-67735283 2.4e-05 28_[-2]_57 chr7:117314720-117314820 2.4e-05 61_[-2]_24 chr4:75588745-75588845 2.4e-05 50_[-2]_35 chr5:34475095-34475195 2.6e-05 80_[+2]_5 chr9:30630385-30630485 2.6e-05 22_[+2]_63 chr6:87825195-87825295 2.6e-05 18_[+2]_67 chr16:11730077-11730177 2.9e-05 36_[-2]_49 chr11:64085282-64085382 2.9e-05 62_[+2]_23 chr11:7566865-7566965 3.2e-05 45_[+2]_40 chr11:69453708-69453808 3.2e-05 53_[+2]_32 chr7:128810183-128810283 3.2e-05 30_[+2]_55 chr3:192162567-192162667 3.2e-05 78_[+2]_7 chr1:196419309-196419409 3.2e-05 34_[+2]_51 chr11:40248191-40248291 3.5e-05 76_[+2]_9 chr6:21399239-21399339 3.5e-05 16_[-2]_69 chr10:110357903-11035800 3.5e-05 2_[-2]_83 chrX:106027132-106027232 3.9e-05 38_[+2]_47 chr8:62662566-62662666 3.9e-05 38_[+2]_47 chrX:150645144-150645244 3.9e-05 48_[-2]_37 chr4:40752935-40753035 3.9e-05 68_[-2]_17 chr4:134018207-134018307 3.9e-05 73_[+2]_12 chr2:174662584-174662684 3.9e-05 5_[+2]_80 chr10:121890728-12189082 4.3e-05 68_[-2]_17 chr2:12395206-12395306 4.3e-05 10_[+2]_75 chr16:73081867-73081967 4.3e-05 17_[+2]_68 chr13:70197009-70197109 4.7e-05 32_[-2]_53 chr7:67382203-67382303 4.7e-05 6_[-2]_79 chr2:163933792-163933892 4.7e-05 64_[+2]_21 chr11:94383101-94383201 4.7e-05 61_[-2]_24 chr6:42747104-42747204 4.7e-05 24_[+2]_61 chr9:138541401-138541501 4.7e-05 22_[-2]_63 chr12:9939950-9940050 4.7e-05 61_[+2]_24 chr1:209304394-209304494 5.1e-05 11_[-2]_74 chr13:89416391-89416491 5.1e-05 46_[+2]_39 chr5:150767555-150767655 5.1e-05 67_[-2]_18 chr3:156035574-156035674 5.1e-05 1_[-2]_84 chr10:111934091-11193419 5.1e-05 66_[+2]_19 chr3:79252005-79252105 5.6e-05 15_[-2]_70 chr4:40121038-40121138 5.6e-05 [-2]_85 chr7:142981617-142981717 6.1e-05 46_[-2]_39 chr1:91391599-91391699 6.1e-05 11_[+2]_74 chr5:109075400-109075500 6.1e-05 63_[-2]_22 chr1:6112407-6112507 6.1e-05 58_[-2]_27 chr12:118558326-11855842 6.1e-05 2_[+2]_83 chr3:100452549-100452649 7.3e-05 80_[-2]_5 chr20:24443118-24443218 7.3e-05 38_[-2]_47 chr6:106201447-106201547 8e-05 42_[-2]_43 chr4:26031840-26031940 8.6e-05 41_[-2]_44 chr12:96005625-96005725 8.6e-05 79_[+2]_6 chr6:50526235-50526335 8.6e-05 69_[+2]_16 chr19:7813530-7813630 8.6e-05 40_[+2]_45 chr6:90377847-90377947 9.4e-05 62_[-2]_23 chr3:185911920-185912020 9.4e-05 22_[+2]_63 chr1:178235363-178235463 9.4e-05 14_[-2]_71 chrX:16331024-16331124 9.4e-05 19_[-2]_66 chr12:125115633-12511573 0.0001 40_[-2]_45 chr3:45742766-45742866 0.0001 58_[+2]_27 chr4:184039339-184039439 0.0001 21_[-2]_64 chr3:137486501-137486601 0.00011 14_[-2]_71 chr10:61899436-61899536 0.00012 41_[+2]_44 chr12:59730685-59730785 0.00012 53_[-2]_32 chr13:58246333-58246433 0.00012 78_[+2]_7 chr7:14025342-14025442 0.00012 23_[-2]_62 chr18:8006226-8006326 0.00013 59_[-2]_26 chr13:68315438-68315538 0.00014 31_[-2]_54 chr9:79085761-79085861 0.00014 67_[+2]_18 chr2:192765776-192765876 0.00015 6_[+2]_79 chr7:113635207-113635307 0.00021 21_[-2]_64 chr8:106664092-106664192 0.00021 30_[-2]_55 chr13:100544512-10054461 0.00023 28_[-2]_57 chr12:66155132-66155232 0.00023 74_[-2]_11 chr10:70738071-70738171 0.00023 16_[+2]_69 chr4:28437830-28437930 0.00026 21_[+2]_64 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTTTNWTATGCAAAT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YTTTNWTATGCAAAT width=15 seqs=163 chr17:35088151-35088251 ( 64) TTTTGTTATGCAAAT 1 chr3:37343494-37343594 ( 31) TTTTGTTATGCAAAT 1 chr4:161513460-161513560 ( 3) CTTTCTTATGCAAAT 1 chrX:16596981-16597081 ( 48) CTTTCATATGCAAAT 1 chr4:81417065-81417165 ( 61) TTTAGTTATGCAAAT 1 chr11:69336331-69336431 ( 5) TTTAGTTATGCAAAT 1 chr5:11650924-11651024 ( 44) TTTACTTATGCAAAT 1 chr13:82233113-82233213 ( 65) TTTTATTATGCAAAT 1 chr10:99239630-99239730 ( 43) TTTTAATATGCAAAT 1 chr11:14369549-14369649 ( 12) CTTTGTTATGCTAAT 1 chr9:37339782-37339882 ( 32) ATTTTTTATGCAAAT 1 chr5:97712414-97712514 ( 50) AATTGTTATGCAAAT 1 chr12:119423529-11942362 ( 70) AATTGATATGCAAAT 1 chr16:79087556-79087656 ( 1) TATAGTTATGCAAAT 1 chr18:72511985-72512085 ( 12) TATTCTTATGCTAAT 1 chr5:105590426-105590526 ( 14) TTTAATTATGCAAAT 1 chr17:42588811-42588911 ( 13) CTTTGATATGTAAAT 1 chr8:89895559-89895659 ( 77) TTAAGTTATGCAAAT 1 chrX:99302968-99303068 ( 20) TTTGTTTATGCAAAT 1 chr17:65318234-65318334 ( 12) TCTTATTATGCAAAT 1 chr4:96292651-96292751 ( 46) TATTGTTATGTAAAT 1 chr5:120187802-120187902 ( 24) TTTGCTTATGCTAAT 1 chr14:97848893-97848993 ( 64) CTATTTTATGCAAAT 1 chr6:170894339-170894439 ( 9) TCTTGTTATGTAAAT 1 chr3:98441246-98441346 ( 24) CTTTAATATGCTAAT 1 chr3:167172814-167172914 ( 81) TTAGCATATGCAAAT 1 chr11:40700776-40700876 ( 64) GTTACTTATGCAAAT 1 chr22:28274601-28274701 ( 66) TAATTATATGCAAAT 1 chr18:59283426-59283526 ( 19) TGTTGTTATGCTAAT 1 chr18:40125141-40125241 ( 36) ATTTGTTATGCAAAA 1 chr5:12332397-12332497 ( 7) TTTACAAATGCAAAT 1 chr6:118180684-118180784 ( 46) CCTTGTTATGTAAAT 1 chr20:1986514-1986614 ( 71) ATAACATATGCAAAT 1 chr9:99982325-99982425 ( 34) TTTACATATGCAAAA 1 chr19:13763594-13763694 ( 6) TTTTATTATGCAGAT 1 chr19:51094863-51094963 ( 70) TTTTATTATGCAGAT 1 chr6:88829451-88829551 ( 71) TTTTCTTATGCAAAC 1 chr21:17131791-17131891 ( 38) TTTTATCATGCAAAT 1 chr8:26435242-26435342 ( 1) CTGGGATATGCAAAT 1 chr4:85487088-85487188 ( 54) CTTGCATATGTAAAT 1 chr11:27494222-27494322 ( 20) CTGGCTTATGCAAAT 1 chr20:50575533-50575633 ( 54) CTTTGATATGCACAT 1 chr2:171359320-171359420 ( 47) TATTAAAATGCAAAT 1 chr3:193065823-193065923 ( 15) TAACGATATGCAAAT 1 chr10:7474469-7474569 ( 1) TTTGCATATGTTAAT 1 chrX:51471365-51471465 ( 30) CTTACTTATGTTAAT 1 chr5:12175728-12175828 ( 10) TTTCTATATGTAAAT 1 chr6:52054749-52054849 ( 36) AAGAGTTATGCAAAT 1 chr17:9012936-9013036 ( 80) CAGACATATGCAAAT 1 chr16:74135343-74135443 ( 45) CTTTCACATGCTAAT 1 chr3:167185255-167185355 ( 67) TCACGTTATGCAAAT 1 chr6:81041447-81041547 ( 58) TCTTCAAATGCTAAT 1 chr6:21692120-21692220 ( 2) TTAAGTTATGCAAAA 1 chr6:26199421-26199521 ( 82) CTGTGGTATGCAAAT 1 chr20:23495962-23496062 ( 82) TTAACAAATGCAAAT 1 chr2:85685949-85686049 ( 45) TGTTGTTATGTTAAT 1 chr2:84160894-84160994 ( 54) TAATGTTATGCAGAT 1 chr16:62259700-62259800 ( 5) GTGTCTTATGCTAAT 1 chr10:52378861-52378961 ( 17) TTTTATTATGGAAAT 1 chr2:175788826-175788926 ( 12) TTTACATATGGAAAT 1 chr2:194714056-194714156 ( 21) CATTGTTATGCATAT 1 chr12:133424122-13342422 ( 37) TAAACATATGTAAAT 1 chr6:129275817-129275917 ( 55) CATATATATGTAAAT 1 chrX:39473122-39473222 ( 30) GTTAGAAATGCAAAT 1 chr17:25672483-25672583 ( 85) TTTTATTATGTAGAT 1 chr4:16898880-16898980 ( 46) TTTTTAAATGCAAAA 1 chr6:20868675-20868775 ( 50) TCTTTTTATGCTAAA 1 chr2:210655867-210655967 ( 10) GCATTTTATGCAAAT 1 chr21:44377036-44377136 ( 80) ATTGTTTATGCAAAA 1 chr9:87829081-87829181 ( 6) GATGCATATGCTAAT 1 chr17:61059466-61059566 ( 80) ATTTCTAATGTTAAT 1 chr8:48436676-48436776 ( 68) ACTTTTTATGTTAAT 1 chr18:72449083-72449183 ( 74) TAAAGATATGCAAAA 1 chr7:7937057-7937157 ( 23) AATACATATGTTAAT 1 chr3:123603260-123603360 ( 7) AAATGTCATGCAAAT 1 chr2:63844746-63844846 ( 32) CCTTCATATGCATAT 1 chr4:34187806-34187906 ( 47) AGGTTATATGCAAAT 1 chr8:82740393-82740493 ( 25) TTAAATTATGCAAAA 1 chr12:19441152-19441252 ( 42) CAGTGTTATGTTAAT 1 chr12:71594855-71594955 ( 79) AAGGTATATGCAAAT 1 chr14:89318094-89318194 ( 9) TTTAAATATGCAAAC 1 chr1:68150672-68150772 ( 15) TTGGGCTATGCAAAT 1 chr12:65017872-65017972 ( 58) CATTGTAATGTTAAT 1 chr1:80623611-80623711 ( 76) CCTTGTTATGTAGAT 1 chr13:30414860-30414960 ( 46) TCTATCTATGCAAAT 1 chr14:57363761-57363861 ( 47) AATGCATATGCAGAT 1 chr11:88034210-88034310 ( 13) ATGCCTTATGTAAAT 1 chr1:232260826-232260926 ( 53) TTTTGTAATGTAGAT 1 chr2:171536840-171536940 ( 59) TCTATAAATGCTAAT 1 chr14:55144084-55144184 ( 50) CTTTGTAATGGAAAT 1 chr14:67735183-67735283 ( 29) TCACTATATGCTAAT 1 chr7:117314720-117314820 ( 62) GGTTCAAATGCAAAT 1 chr4:75588745-75588845 ( 51) ACTCTTTATGTAAAT 1 chr5:34475095-34475195 ( 81) GCACCTTATGCAAAT 1 chr9:30630385-30630485 ( 23) ACACAATATGCAAAT 1 chr6:87825195-87825295 ( 19) CTTGAATATGCACAT 1 chr16:11730077-11730177 ( 37) ACGTGCTATGCAAAT 1 chr11:64085282-64085382 ( 63) TTCCTATATGCAAAT 1 chr11:7566865-7566965 ( 46) CAGCTTTATGCTAAT 1 chr11:69453708-69453808 ( 54) TTGGCTCATGCTAAT 1 chr7:128810183-128810283 ( 31) TGATGATATGCTAAA 1 chr3:192162567-192162667 ( 79) ACTAATTATGCAGAT 1 chr1:196419309-196419409 ( 35) CATTCATATGTTGAT 1 chr11:40248191-40248291 ( 77) TATACATATGTACAT 1 chr6:21399239-21399339 ( 17) TTTTAGCATGCTAAT 1 chr10:110357903-11035800 ( 3) CATTCCTATGTTAAT 1 chrX:106027132-106027232 ( 39) AATTCATATGTATAT 1 chr8:62662566-62662666 ( 39) TGACTTTATGCTAAT 1 chrX:150645144-150645244 ( 49) TCAACATATGCACAT 1 chr4:40752935-40753035 ( 69) CAAAGATATGCACAT 1 chr4:134018207-134018307 ( 74) CTTTCTTATGAAAAT 1 chr2:174662584-174662684 ( 6) TTTAGTCATGCATAT 1 chr10:121890728-12189082 ( 69) CAAGCTAATGCTAAT 1 chr2:12395206-12395306 ( 11) AAATGGAATGCAAAT 1 chr16:73081867-73081967 ( 18) TCGCTTTATGTAAAT 1 chr13:70197009-70197109 ( 33) TACTCTTATGTTAAT 1 chr7:67382203-67382303 ( 7) TATACAAATGCTAAA 1 chr2:163933792-163933892 ( 65) CTTTGAAATGGTAAT 1 chr11:94383101-94383201 ( 62) ATATTCTATGTAAAT 1 chr6:42747104-42747204 ( 25) GAAAAATATGCTAAT 1 chr9:138541401-138541501 ( 23) GTCTGTTATGTAAAT 1 chr12:9939950-9940050 ( 62) TTTTTACATGTAAAA 1 chr1:209304394-209304494 ( 12) TGTTTTAATGTTAAT 1 chr13:89416391-89416491 ( 47) CTTTAGAATGTAAAT 1 chr5:150767555-150767655 ( 68) TCTTATCATGCAGAT 1 chr3:156035574-156035674 ( 2) AAGCAATATGCTAAT 1 chr10:111934091-11193419 ( 67) GTAATATATGCAAAA 1 chr3:79252005-79252105 ( 16) ATTGAGAATGCAAAT 1 chr4:40121038-40121138 ( 1) TAAGCATATGTAAAA 1 chr7:142981617-142981717 ( 47) ATATTGTATGTTAAT 1 chr1:91391599-91391699 ( 12) TTTTGACATGTAAAC 1 chr5:109075400-109075500 ( 64) AAATAATATGCTGAT 1 chr1:6112407-6112507 ( 59) CGTATTTATGCTAAA 1 chr12:118558326-11855842 ( 3) CTTTGAAATGTGAAT 1 chr3:100452549-100452649 ( 81) ACTGAATATGCACAT 1 chr20:24443118-24443218 ( 39) AGTTGTCATGCAGAT 1 chr6:106201447-106201547 ( 43) CTGCATAATGCTAAT 1 chr4:26031840-26031940 ( 42) TAAGGTTATGCAGAA 1 chr12:96005625-96005725 ( 80) TTAATGAATGCTAAT 1 chr6:50526235-50526335 ( 70) TTTCCATATGGAGAT 1 chr19:7813530-7813630 ( 41) ATTTCACATGGTAAT 1 chr6:90377847-90377947 ( 63) AAGTCATATGTTAAA 1 chr3:185911920-185912020 ( 23) CATTTATGTGCAAAT 1 chr1:178235363-178235463 ( 15) ATTTAACATGTAAAA 1 chrX:16331024-16331124 ( 20) ATAAGATATGCAACT 1 chr12:125115633-12511573 ( 41) TGACGATATGCTAAA 1 chr3:45742766-45742866 ( 59) TTGGTAAATGTTAAT 1 chr4:184039339-184039439 ( 22) TTTTCACATGCATAA 1 chr3:137486501-137486601 ( 15) TTTTGTAATGCTAAG 1 chr10:61899436-61899536 ( 42) GCTACGTATGCAAAA 1 chr12:59730685-59730785 ( 54) TTTGGATATGTGAAA 1 chr13:58246333-58246433 ( 79) ATTTGTTATGTAATT 1 chr7:14025342-14025442 ( 24) TTATCGTATGCAACT 1 chr18:8006226-8006326 ( 60) ATTTATTATGCGAAC 1 chr13:68315438-68315538 ( 32) TGATTATATGTTAAA 1 chr9:79085761-79085861 ( 68) ATCTGTTATGCTAAC 1 chr2:192765776-192765876 ( 7) GAGTCAAATGTTAAT 1 chr7:113635207-113635307 ( 22) CATATTTATGCGCAT 1 chr8:106664092-106664192 ( 31) ATATGCTATGTATAT 1 chr13:100544512-10054461 ( 29) GGTTGTTATGTTTAT 1 chr12:66155132-66155232 ( 75) ATGTTGTATGCTAAC 1 chr10:70738071-70738171 ( 17) CATATATATGCGCAT 1 chr4:28437830-28437930 ( 22) CGTAAAAATGCATAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTTTNWTATGCAAAT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 50740 bayes= 9.76623 E= 9.7e-106 -30 9 -146 72 -12 -64 -146 90 -30 -316 -77 114 -19 -116 -77 91 -71 42 57 -43 64 -258 -184 73 -81 -146 -1399 144 183 -1399 -516 -1399 -1399 -1399 -1399 183 -1399 -1399 219 -1399 -551 163 -258 -2 125 -1399 -284 10 154 -216 -135 -251 181 -416 -1399 -551 -105 -258 -516 155 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTTTNWTATGCAAAT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 163 E= 9.7e-106 0.226994 0.233129 0.079755 0.460123 0.257669 0.141104 0.079755 0.521472 0.226994 0.024540 0.128834 0.619632 0.245399 0.098160 0.128834 0.527607 0.171779 0.294479 0.325153 0.208589 0.435583 0.036810 0.061350 0.466258 0.159509 0.079755 0.000000 0.760736 0.993865 0.000000 0.006135 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.006135 0.680982 0.036810 0.276074 0.668712 0.000000 0.030675 0.300613 0.815951 0.049080 0.085890 0.049080 0.981595 0.012270 0.000000 0.006135 0.134969 0.036810 0.006135 0.822086 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTTTNWTATGCAAAT MEME-2 regular expression -------------------------------------------------------------------------------- [TCA][TA][TA][TA][GCT][TA]TATG[CT][AT]AAT -------------------------------------------------------------------------------- Time 554.98 secs. ******************************************************************************** ******************************************************************************** MOTIF CSSMYSCYCCBBSCSCCABBSCCGSCSCC MEME-3 width = 29 sites = 43 llr = 617 E-value = 1.5e-040 ******************************************************************************** -------------------------------------------------------------------------------- Motif CSSMYSCYCCBBSCSCCABBSCCGSCSCC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :1131::::::2:21215::::11::::: pos.-specific C 73644475874356568334487265696 probability G 343116:221344:31214442:5333:2 matrix T :2:13134:232:1:1:1221:21121:2 bits 2.2 2.0 1.7 1.5 Relative 1.3 * * * * Entropy 1.1 * * * * * * * (20.7 bits) 0.9 * * ** ** * * ** * ** 0.7 * * ***** *** * *** * *** 0.4 * * ****** ***** *********** 0.2 ***************************** 0.0 ----------------------------- Multilevel CGCCCGCCCCCGCCCCCAGCGCCGCCCCC consensus GCGATCTT TTCG G CCGC CGGG sequence GT TT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSSMYSCYCCBBSCSCCABBSCCGSCSCC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chr21:47063108-47063208 + 44 7.86e-13 ccaggtcccc gccccgcccccagccccacccccgccccT TTGACTGGAG chr8:145560331-145560431 - 26 1.42e-12 CCCCGCCCCC CGCCCGCCGCCGCCGCCGCCGCCGCCGCC GCCGTCGCCA chr15:72611995-72612095 - 19 1.00e-10 CCTGGGCAGC CCCCCGCCCTCTCCGCCCGGGCTCCGCCC CCTCCCCCTG chr20:48099185-48099285 - 1 1.56e-10 ATCTCTTGGG GCCCTCTCCCCGCCCCGAGGGGCGGCCCC chr17:27332911-27333011 - 59 1.56e-10 AGCCGCTCCT CCCGCGCCCCCGCCCCCAGCCCCGCTCGG CGATCCCCGG chr1:180991787-180991887 + 54 1.81e-10 GAGGGCCTGA CCCCACCCCCGGGACCCTCGGCCGCGGCC AATCACGAAC chrX:199983-200083 - 38 2.78e-10 CGGCCGCCCC CACCCGGGCCTGGCACCACGGCCGCCCCC ACCCGGGCCT chr16:73081867-73081967 - 63 1.08e-09 GAAGGCCCC CCGCCCCGCCCGCCCCCCTTCCCCGGGCG GTGCGCGCTG chr17:61600315-61600415 + 20 1.08e-09 cccgcccagc ggccccctccccgccgccggcgcgcggcT TCTTTCAGCA chr3:123603260-123603360 + 44 2.98e-09 GGGAGTGGAC CTGCTGCCCTTCCCGCCACGCCCACCCGC CTTCTGCCTC chr16:68482289-68482389 + 47 8.64e-09 CATTGGGGGC GTCCTCCCCTCTCCCTCCGGCCCCGCCCG CAGGTTCCTG chr14:66393122-66393222 + 32 8.64e-09 ccccttgccc cacatgttcctggcaacatggctgccccc acatatcccc chr5:90397678-90397778 + 63 1.08e-08 AGGAACAGTT CTCATCCTCCCCCAGCCATCCCTGGGCCT ACCAGCAGC chr1:155248041-155248141 - 26 1.21e-08 CTCAGTCACT CTGAGTCTCGGCCCCGCCCCGCCGCCCCC GCCTTCAGCA chr5:25570216-25570316 + 25 1.69e-08 tccttgttca cacatgtgcctggcaacatggccaccccc acatatcccc chrX:73479548-73479648 + 71 1.89e-08 gccctttccc cacaggttcctggcaacatggccaccccc a chr16:89992506-89992606 - 8 2.89e-08 CTCCAGGACC CGAATGCGGTTCCCGCCCGGCCCGCGGCT CCGCAGG chr9:131798662-131798762 - 14 3.22e-08 AGCTTATATT CCGCCTCTCCCGCCCTCTTCCCCTCCTCC TAGTGCGGTT chr11:69453708-69453808 + 22 3.57e-08 CGAGATCTGC CCGGTCCGCCTAGTAACAGCGCCGCGCCC CCATTGGCTC chr8:26435242-26435342 - 69 7.26e-08 TGG CGCATGCGCCGCCAGCCACTCCCTTTCCT CTCAGGCAAA chr8:50824108-50824208 + 28 8.84e-08 gctgccgccg ccgctgtccttgccgccactgtcgtcgcc acGGGCAGCT chr3:98441246-98441346 - 57 1.18e-07 AGATTGAGTA CTAACCTCGCCTCCCACACCCCTGCCTCC AGGCCATATT chr3:131080426-131080526 + 64 2.07e-07 CGCCCTGATT GGCTGCCTCCGGCACCGGTCGCTGCGCCC TGACCTAA chr12:119591432-11959153 + 5 2.48e-07 TCCT CTCTGGCCCCGCCTCCCCGTTCTCGGGCC TTCTTCCTCT chr14:30194302-30194402 - 65 3.25e-07 GACTTAA GGCTTCCTCCCAGCCCCCTCTCAGCCTCT AGCAACATAC chr8:28747597-28747697 - 5 3.87e-07 TACAACTTCC GGCAAGCCCCGTGCCCATCCGCCTTCCCT TTGG chr20:56804509-56804609 - 16 4.23e-07 TCTGTTTCCC CTCGCCCTCCTAGCTCCCGCCCCCGTCAC TTCGGCGCTT chr20:34968000-34968100 - 62 4.23e-07 CTACTCCAGG CTCCTCTCCTTCCCCGCTCTGCGGCTGCC TTAGCCTCAC chr9:140772912-140773012 + 21 4.61e-07 GAGCAGCGTG CGCCTGCGCGGGGTCTCCCTCCAGCCTCG CCTGGGGGCG chr11:77705542-77705642 - 50 7.04e-07 CAACAGGAAG CGGTCGCTCTTTCCCCAAATCCCACTGCC TTGTGGGATC chr20:44660334-44660434 + 66 7.65e-07 AGCCCTGGCT GACAAGTCCCGGGAGCCTGGCGTCCCGCC CAGGCA chr1:1710208-1710308 - 8 8.30e-07 GGGCGTGAGG CCGATCGCGGTTCCCCCAGGCGCAGGGCC GCCCTCC chr2:30142764-30142864 - 30 8.30e-07 GGGTGCTGAA GGGCGGCTCCGTGCGCAAGCTCCGGCGTG CCAAGCAGTT chr9:136474521-136474621 - 25 8.30e-07 TCCAGGAGGT CGCGCGTCCCGGGCGAGAGCGGACGAGCC GTCAGCACCA chr22:37099441-37099541 - 7 8.30e-07 GGAAAGGCGG CCCCCGCTCTGCGCTGGCCTTGCTGCCCC GGGGAG chr6:50688368-50688468 + 61 9.77e-07 AATTAGGGAC GGGAGCCCGCTTCTCCCACAGCCGGCCTC TTGCTACTGC chr1:221915321-221915421 + 38 1.57e-06 CGGAGAAAGC CGACCGCTACCTCACAGAGCCCCGCGACC AATGGGCAGC chr3:48698951-48699051 + 41 1.70e-06 CTTTCTGCTC CGGATGTCGTGGCTCTCTCGCCCTGACCC TTGCTCCCTG chr3:114865963-114866063 + 40 2.30e-06 CAATGAGAAT GGGACGCCCCTCGTGAGGTTGCCGCCCAT AAACAAAATG chr3:62304554-62304654 - 4 2.48e-06 ATCGAAGATC CGCACCTTCTCAGAGTCATCTGCCCTCCG GCC chr22:39638906-39639006 - 69 2.88e-06 GGA CGCCCTCCGGCACGCGCAGGGCATGCCCG GCCCCAGAGC chr11:27494222-27494322 - 67 3.58e-06 GAGCT CGAGACCTCCCCGGGCCAATGGCGCTCCG GGAGAAGGGA chr12:85862637-85862737 + 4 1.00e-05 gga ccggcgttcgcatacggaggtcccgcgcc ggcactggcc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSSMYSCYCCBBSCSCCABBSCCGSCSCC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr21:47063108-47063208 7.9e-13 43_[+3]_28 chr8:145560331-145560431 1.4e-12 25_[-3]_46 chr15:72611995-72612095 1e-10 18_[-3]_53 chr20:48099185-48099285 1.6e-10 [-3]_71 chr17:27332911-27333011 1.6e-10 58_[-3]_13 chr1:180991787-180991887 1.8e-10 53_[+3]_18 chrX:199983-200083 2.8e-10 37_[-3]_34 chr16:73081867-73081967 1.1e-09 62_[-3]_9 chr17:61600315-61600415 1.1e-09 19_[+3]_52 chr3:123603260-123603360 3e-09 43_[+3]_28 chr16:68482289-68482389 8.6e-09 46_[+3]_25 chr14:66393122-66393222 8.6e-09 31_[+3]_40 chr5:90397678-90397778 1.1e-08 62_[+3]_9 chr1:155248041-155248141 1.2e-08 25_[-3]_46 chr5:25570216-25570316 1.7e-08 24_[+3]_47 chrX:73479548-73479648 1.9e-08 70_[+3]_1 chr16:89992506-89992606 2.9e-08 7_[-3]_64 chr9:131798662-131798762 3.2e-08 13_[-3]_58 chr11:69453708-69453808 3.6e-08 21_[+3]_50 chr8:26435242-26435342 7.3e-08 68_[-3]_3 chr8:50824108-50824208 8.8e-08 27_[+3]_44 chr3:98441246-98441346 1.2e-07 56_[-3]_15 chr3:131080426-131080526 2.1e-07 63_[+3]_8 chr12:119591432-11959153 2.5e-07 4_[+3]_67 chr14:30194302-30194402 3.2e-07 64_[-3]_7 chr8:28747597-28747697 3.9e-07 4_[-3]_67 chr20:56804509-56804609 4.2e-07 15_[-3]_56 chr20:34968000-34968100 4.2e-07 61_[-3]_10 chr9:140772912-140773012 4.6e-07 20_[+3]_51 chr11:77705542-77705642 7e-07 49_[-3]_22 chr20:44660334-44660434 7.6e-07 65_[+3]_6 chr1:1710208-1710308 8.3e-07 7_[-3]_64 chr2:30142764-30142864 8.3e-07 29_[-3]_42 chr9:136474521-136474621 8.3e-07 24_[-3]_47 chr22:37099441-37099541 8.3e-07 6_[-3]_65 chr6:50688368-50688468 9.8e-07 60_[+3]_11 chr1:221915321-221915421 1.6e-06 37_[+3]_34 chr3:48698951-48699051 1.7e-06 40_[+3]_31 chr3:114865963-114866063 2.3e-06 39_[+3]_32 chr3:62304554-62304654 2.5e-06 3_[-3]_68 chr22:39638906-39639006 2.9e-06 68_[-3]_3 chr11:27494222-27494322 3.6e-06 66_[-3]_5 chr12:85862637-85862737 1e-05 3_[+3]_68 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSSMYSCYCCBBSCSCCABBSCCGSCSCC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CSSMYSCYCCBBSCSCCABBSCCGSCSCC width=29 seqs=43 chr21:47063108-47063208 ( 44) GCCCCGCCCCCAGCCCCACCCCCGCCCCT 1 chr8:145560331-145560431 ( 26) CGCCCGCCGCCGCCGCCGCCGCCGCCGCC 1 chr15:72611995-72612095 ( 19) CCCCCGCCCTCTCCGCCCGGGCTCCGCCC 1 chr20:48099185-48099285 ( 1) GCCCTCTCCCCGCCCCGAGGGGCGGCCCC 1 chr17:27332911-27333011 ( 59) CCCGCGCCCCCGCCCCCAGCCCCGCTCGG 1 chr1:180991787-180991887 ( 54) CCCCACCCCCGGGACCCTCGGCCGCGGCC 1 chrX:199983-200083 ( 38) CACCCGGGCCTGGCACCACGGCCGCCCCC 1 chr16:73081867-73081967 ( 63) CCGCCCCGCCCGCCCCCCTTCCCCGGGCG 1 chr17:61600315-61600415 ( 20) GGCCCCCTCCCCGCCGCCGGCGCGCGGCT 1 chr3:123603260-123603360 ( 44) CTGCTGCCCTTCCCGCCACGCCCACCCGC 1 chr16:68482289-68482389 ( 47) GTCCTCCCCTCTCCCTCCGGCCCCGCCCG 1 chr14:66393122-66393222 ( 32) CACATGTTCCTGGCAACATGGCTGCCCCC 1 chr5:90397678-90397778 ( 63) CTCATCCTCCCCCAGCCATCCCTGGGCCT 1 chr1:155248041-155248141 ( 26) CTGAGTCTCGGCCCCGCCCCGCCGCCCCC 1 chr5:25570216-25570316 ( 25) CACATGTGCCTGGCAACATGGCCACCCCC 1 chrX:73479548-73479648 ( 71) CACAGGTTCCTGGCAACATGGCCACCCCC 1 chr16:89992506-89992606 ( 8) CGAATGCGGTTCCCGCCCGGCCCGCGGCT 1 chr9:131798662-131798762 ( 14) CCGCCTCTCCCGCCCTCTTCCCCTCCTCC 1 chr11:69453708-69453808 ( 22) CCGGTCCGCCTAGTAACAGCGCCGCGCCC 1 chr8:26435242-26435342 ( 69) CGCATGCGCCGCCAGCCACTCCCTTTCCT 1 chr8:50824108-50824208 ( 28) CCGCTGTCCTTGCCGCCACTGTCGTCGCC 1 chr3:98441246-98441346 ( 57) CTAACCTCGCCTCCCACACCCCTGCCTCC 1 chr3:131080426-131080526 ( 64) GGCTGCCTCCGGCACCGGTCGCTGCGCCC 1 chr12:119591432-11959153 ( 5) CTCTGGCCCCGCCTCCCCGTTCTCGGGCC 1 chr14:30194302-30194402 ( 65) GGCTTCCTCCCAGCCCCCTCTCAGCCTCT 1 chr8:28747597-28747697 ( 5) GGCAAGCCCCGTGCCCATCCGCCTTCCCT 1 chr20:56804509-56804609 ( 16) CTCGCCCTCCTAGCTCCCGCCCCCGTCAC 1 chr20:34968000-34968100 ( 62) CTCCTCTCCTTCCCCGCTCTGCGGCTGCC 1 chr9:140772912-140773012 ( 21) CGCCTGCGCGGGGTCTCCCTCCAGCCTCG 1 chr11:77705542-77705642 ( 50) CGGTCGCTCTTTCCCCAAATCCCACTGCC 1 chr20:44660334-44660434 ( 66) GACAAGTCCCGGGAGCCTGGCGTCCCGCC 1 chr1:1710208-1710308 ( 8) CCGATCGCGGTTCCCCCAGGCGCAGGGCC 1 chr2:30142764-30142864 ( 30) GGGCGGCTCCGTGCGCAAGCTCCGGCGTG 1 chr9:136474521-136474621 ( 25) CGCGCGTCCCGGGCGAGAGCGGACGAGCC 1 chr22:37099441-37099541 ( 7) CCCCCGCTCTGCGCTGGCCTTGCTGCCCC 1 chr6:50688368-50688468 ( 61) GGGAGCCCGCTTCTCCCACAGCCGGCCTC 1 chr1:221915321-221915421 ( 38) CGACCGCTACCTCACAGAGCCCCGCGACC 1 chr3:48698951-48699051 ( 41) CGGATGTCGTGGCTCTCTCGCCCTGACCC 1 chr3:114865963-114866063 ( 40) GGGACGCCCCTCGTGAGGTTGCCGCCCAT 1 chr3:62304554-62304654 ( 4) CGCACCTTCTCAGAGTCATCTGCCCTCCG 1 chr22:39638906-39639006 ( 69) CGCCCTCCGGCACGCGCAGGGCATGCCCG 1 chr11:27494222-27494322 ( 67) CGAGACCTCCCCGGGCCAATGGCGCTCCG 1 chr12:85862637-85862737 ( 4) CCGGCGTTCGCATACGGAGGTCCCGCGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSSMYSCYCCBBSCSCCABBSCCGSCSCC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 42480 bayes= 11.8134 E= 1.5e-040 -1207 176 22 -1207 -127 35 93 -59 -159 146 46 -1207 32 93 -65 -159 -159 93 -65 32 -1207 76 134 -201 -1207 162 -224 -1 -1207 108 -43 41 -359 189 -43 -1207 -1207 157 -92 -27 -1207 85 35 22 -78 22 76 -42 -1207 128 101 -359 -59 151 -224 -101 -127 128 46 -259 -59 134 -65 -127 -201 180 -43 -1207 93 22 -165 -101 -259 67 76 -27 -359 76 76 -27 -1207 93 101 -101 -1207 185 -24 -359 -159 171 -324 -78 -127 -7 128 -101 -1207 146 57 -201 -259 128 22 -78 -359 134 57 -159 -259 197 -224 -259 -1207 151 -24 -59 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSSMYSCYCCBBSCSCCABBSCCGSCSCC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 43 E= 1.5e-040 0.000000 0.744186 0.255814 0.000000 0.116279 0.279070 0.418605 0.186047 0.093023 0.604651 0.302326 0.000000 0.348837 0.418605 0.139535 0.093023 0.093023 0.418605 0.139535 0.348837 0.000000 0.372093 0.558140 0.069767 0.000000 0.674419 0.046512 0.279070 0.000000 0.465116 0.162791 0.372093 0.023256 0.813953 0.162791 0.000000 0.000000 0.651163 0.116279 0.232558 0.000000 0.395349 0.279070 0.325581 0.162791 0.255814 0.372093 0.209302 0.000000 0.534884 0.441860 0.023256 0.186047 0.627907 0.046512 0.139535 0.116279 0.534884 0.302326 0.046512 0.186047 0.558140 0.139535 0.116279 0.069767 0.767442 0.162791 0.000000 0.534884 0.255814 0.069767 0.139535 0.046512 0.348837 0.372093 0.232558 0.023256 0.372093 0.372093 0.232558 0.000000 0.418605 0.441860 0.139535 0.000000 0.790698 0.186047 0.023256 0.093023 0.720930 0.023256 0.162791 0.116279 0.209302 0.534884 0.139535 0.000000 0.604651 0.325581 0.069767 0.046512 0.534884 0.255814 0.162791 0.023256 0.558140 0.325581 0.093023 0.046512 0.860465 0.046512 0.046512 0.000000 0.627907 0.186047 0.186047 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSSMYSCYCCBBSCSCCABBSCCGSCSCC MEME-3 regular expression -------------------------------------------------------------------------------- [CG][GC][CG][CA][CT][GC][CT][CT]C[CT][CTG][GCT][CG]C[CG]CC[AC][GCT][CGT][GC]CC[GC][CG][CG][CG]CC -------------------------------------------------------------------------------- Time 800.78 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:99834371-99834471 5.65e-01 100 chr2:116900381-116900481 4.73e-01 100 chr7:106771287-106771387 6.18e-02 100 chr17:33030640-33030740 6.04e-01 100 chr3:131080426-131080526 2.81e-04 63_[+3(2.07e-07)]_8 chr10:111934091-11193419 6.81e-02 66_[+2(5.15e-05)]_19 chr12:9939950-9940050 9.45e-02 61_[+2(4.70e-05)]_24 chrX:51471365-51471465 8.88e-03 29_[+2(3.86e-06)]_56 chr5:7261159-7261259 6.75e-01 100 chr18:31151983-31152083 5.58e-01 100 chr17:65970915-65971015 2.58e-01 100 chr3:156035574-156035674 1.39e-01 1_[-2(5.15e-05)]_6_[+2(5.15e-05)]_\ 63 chr12:118558326-11855842 3.00e-02 2_[+2(6.15e-05)]_83 chr11:27494222-27494322 5.62e-06 19_[+2(2.52e-06)]_32_[-3(3.58e-06)]_\ 5 chr9:29875517-29875617 9.75e-01 100 chr1:236451150-236451250 5.91e-01 100 chr3:181327867-181327967 8.17e-01 100 chr13:69289822-69289922 2.34e-02 53_[+1(7.97e-05)]_26 chr6:41934229-41934329 3.47e-01 100 chr12:19441152-19441252 5.14e-02 41_[+2(1.38e-05)]_44 chr3:89327504-89327604 2.30e-01 100 chr13:56011140-56011240 7.65e-01 100 chr10:21569973-21570073 6.87e-01 100 chr3:160701691-160701791 5.48e-01 100 chr9:128105534-128105634 2.22e-01 100 chr17:49946765-49946865 1.27e-06 60_[-1(4.98e-10)]_19 chr8:142726050-142726150 7.94e-02 100 chr3:20522318-20522418 2.40e-02 100 chr19:17799029-17799129 4.91e-02 100 chr8:39759615-39759715 9.58e-01 100 chr5:112314370-112314470 6.89e-01 100 chr1:42276182-42276282 3.00e-06 38_[+1(9.61e-10)]_41 chr9:79085761-79085861 6.65e-02 100 chr10:52378861-52378961 2.87e-02 16_[-2(6.67e-06)]_69 chr1:196419309-196419409 6.76e-02 34_[+2(3.22e-05)]_51 chr8:114448249-114448349 8.56e-01 100 chr12:101220144-10122024 3.62e-07 51_[+1(3.09e-10)]_28 chr5:87852193-87852293 4.28e-01 100 chr1:62592417-62592517 7.45e-01 100 chr4:161513460-161513560 2.03e-04 2_[-2(1.57e-08)]_83 chr20:34968000-34968100 1.20e-03 61_[-3(4.23e-07)]_10 chr2:215109657-215109757 6.74e-01 100 chr16:79087556-79087656 7.44e-04 [+2(1.88e-07)]_85 chr20:52482802-52482902 8.88e-01 100 chr4:21545280-21545380 6.88e-01 100 chr5:123804117-123804217 3.15e-01 100 chr6:129275817-129275917 2.55e-02 54_[+2(7.55e-06)]_31 chr6:57639117-57639217 9.64e-01 100 chr17:15083388-15083488 9.78e-04 48_[-1(5.18e-06)]_31 chrX:199983-200083 1.50e-06 37_[-3(2.78e-10)]_[+3(5.52e-05)]_5 chr4:85487088-85487188 9.25e-03 53_[-2(2.52e-06)]_32 chr12:57472575-57472675 1.05e-02 61_[-3(2.53e-05)]_10 chr7:92324704-92324804 2.92e-01 100 chr5:118415097-118415197 9.86e-01 100 chr18:74983224-74983324 8.86e-01 100 chr3:150317338-150317438 8.04e-01 100 chr2:164591482-164591582 1.14e-01 100 chr15:83331940-83332040 7.67e-07 26_[-1(2.77e-10)]_53 chr9:138541401-138541501 1.17e-01 22_[-2(4.70e-05)]_63 chr15:48482819-48482919 8.57e-01 100 chr2:84160894-84160994 1.15e-02 53_[-2(5.88e-06)]_32 chr4:169770137-169770237 8.94e-01 100 chr3:167185255-167185355 2.56e-02 66_[-2(4.47e-06)]_19 chr22:37099441-37099541 1.01e-04 6_[-3(8.30e-07)]_17_[+1(5.21e-05)]_\ 27 chr13:68315438-68315538 2.47e-02 100 chr11:77464042-77464142 8.59e-02 [+1(9.35e-05)]_79 chr16:12755595-12755695 9.47e-02 2_[+1(9.35e-05)]_77 chr5:129502046-129502146 7.90e-01 100 chr6:10583003-10583103 4.43e-01 100 chr4:66501096-66501196 8.06e-01 100 chr3:72610028-72610128 9.12e-01 100 chr1:87894239-87894339 9.44e-01 100 chr22:41123295-41123395 5.50e-01 100 chr3:123603260-123603360 7.72e-08 6_[-2(1.23e-05)]_22_[+3(2.98e-09)]_\ 28 chr4:28437830-28437930 1.53e-01 100 chr9:137990297-137990397 9.80e-02 100 chr13:54768478-54768578 1.44e-01 100 chr3:37343494-37343594 1.48e-06 30_[+2(2.47e-09)]_55 chr1:175694842-175694942 4.10e-06 1_[-1(8.50e-05)]_14_[-1(2.20e-10)]_\ 43 chr3:171145316-171145416 9.36e-01 100 chr1:58406358-58406458 1.75e-01 100 chr9:34430770-34430870 1.49e-06 32_[+1(3.46e-10)]_47 chr14:57363761-57363861 3.25e-02 46_[-2(1.73e-05)]_39 chr6:40965229-40965329 6.40e-01 100 chr17:75063007-75063107 9.56e-01 100 chr3:196930687-196930787 9.51e-02 100 chr9:2281025-2281125 3.96e-01 100 chr4:16898880-16898980 4.57e-03 45_[-2(9.62e-06)]_40 chr8:62200374-62200474 5.62e-05 24_[-1(6.69e-08)]_55 chr18:71098847-71098947 3.45e-01 100 chr14:96446772-96446872 2.52e-01 100 chr2:208630700-208630800 4.33e-01 100 chr8:82740393-82740493 4.24e-02 24_[+2(1.38e-05)]_61 chr17:61600315-61600415 3.74e-09 19_[+3(1.08e-09)]_3_[-1(4.49e-07)]_\ 28 chr7:100184047-100184147 6.37e-01 100 chr17:29721648-29721748 3.88e-06 61_[-1(3.92e-09)]_18 chr9:131798662-131798762 2.20e-04 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chr1:209304394-209304494 8.71e-02 11_[-2(5.15e-05)]_74 chr5:105590426-105590526 3.42e-04 13_[-2(3.06e-07)]_72 chr9:7240639-7240739 2.60e-01 100 chr22:27373769-27373869 5.32e-05 58_[+1(1.34e-08)]_21 chr12:7910920-7911020 6.96e-03 52_[-3(1.07e-05)]_19 chr2:194714056-194714156 1.46e-02 20_[+2(7.55e-06)]_65 chr14:66393122-66393222 6.46e-05 31_[+3(8.64e-09)]_40 chr19:34575727-34575827 9.62e-01 100 chr14:26045848-26045948 3.92e-01 100 chr22:37040282-37040382 3.61e-06 63_[+1(2.20e-10)]_16 chr7:75854470-75854570 3.00e-01 100 chr8:103918481-103918581 5.63e-01 100 chr11:104494696-10449479 1.13e-01 100 chr16:68482289-68482389 2.31e-05 46_[+3(8.64e-09)]_25 chr18:20863753-20863853 4.76e-02 5_[-1(7.00e-05)]_74 chr3:10501657-10501757 6.31e-02 75_[+1(9.05e-05)]_4 chr10:99239630-99239730 3.18e-04 42_[-2(7.42e-08)]_43 chrX:54414029-54414129 2.65e-01 100 chr1:178235363-178235463 1.31e-01 13_[+2(8.63e-05)]_72 chr4:81417065-81417165 1.16e-04 60_[+2(4.37e-08)]_25 chr2:175788826-175788926 1.16e-02 11_[-2(7.55e-06)]_74 chrX:73479548-73479648 2.03e-05 70_[+3(1.89e-08)]_1 chr3:72987883-72987983 8.08e-01 100 chr20:37321040-37321140 1.55e-02 100 chr11:22359772-22359872 8.09e-01 100 chr2:50199778-50199878 3.39e-01 100 chr4:113261241-113261341 1.55e-01 100 chr4:90882376-90882476 7.02e-01 100 chr1:107724072-107724172 4.10e-01 100 chr15:72611995-72612095 6.45e-07 18_[-3(1.00e-10)]_19_[-3(6.28e-06)]_\ 5 chr12:59730685-59730785 2.25e-01 100 chr5:11650924-11651024 4.99e-05 43_[-2(6.17e-08)]_42 chr6:110299519-110299619 4.82e-02 19_[+3(4.22e-05)]_52 chr2:55459288-55459388 6.07e-01 100 chr3:164913611-164913711 3.27e-01 100 chr22:28274601-28274701 6.56e-03 65_[-2(1.13e-06)]_20 chr6:4895708-4895808 4.45e-02 100 chr3:17801303-17801403 8.24e-01 100 chr1:30446942-30447042 2.52e-01 100 chrX:62801236-62801336 8.26e-01 100 chr12:124556515-12455661 5.67e-01 100 chr22:29137595-29137695 2.85e-01 100 chr13:74339850-74339950 2.92e-01 100 chr1:68759734-68759834 1.39e-01 100 chr11:62525427-62525527 9.68e-02 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chr13:88150794-88150894 9.70e-01 100 chr1:91391599-91391699 1.65e-01 11_[+2(6.15e-05)]_74 chr8:142970680-142970780 9.20e-01 100 chr10:88616889-88616989 8.58e-02 18_[+1(9.05e-05)]_61 chr10:53930448-53930548 5.57e-01 100 chr14:89444150-89444250 9.17e-01 100 chr4:34187806-34187906 2.02e-02 46_[+2(1.38e-05)]_39 chr7:71310996-71311096 9.45e-01 100 chr8:95450378-95450478 2.90e-01 100 chr8:62662566-62662666 1.52e-03 38_[+2(3.90e-05)]_12_[-1(7.00e-05)]_\ 14 chr11:14369549-14369649 4.70e-04 11_[-2(1.11e-07)]_74 chr4:6157231-6157331 2.81e-01 100 chr1:82269602-82269702 1.90e-01 100 chr2:210170022-210170122 7.67e-01 100 chr13:20269684-20269784 6.49e-01 100 chr18:20749061-20749161 2.57e-01 100 chr6:71594723-71594823 9.49e-01 100 chr6:159274524-159274624 5.09e-02 100 chr4:134053063-134053163 1.00e+00 100 chr3:56145844-56145944 9.59e-01 100 chr21:35014106-35014206 5.13e-01 100 chr1:156736902-156737002 2.61e-01 100 chr7:113635207-113635307 1.91e-01 100 chr2:58194651-58194751 4.58e-01 100 chr7:142981617-142981717 5.84e-02 46_[-2(6.15e-05)]_39 chr11:7566865-7566965 7.49e-02 45_[+2(3.22e-05)]_40 chr6:21692120-21692220 2.65e-02 1_[-2(5.13e-06)]_84 chr6:22250663-22250763 8.58e-01 100 chr11:40248191-40248291 9.59e-02 76_[+2(3.55e-05)]_9 chr10:60966544-60966644 4.24e-01 100 chr1:44434035-44434135 1.08e-07 72_[-1(7.65e-11)]_7 chr6:118180684-118180784 1.09e-02 45_[+2(1.58e-06)]_40 chr3:104238308-104238408 3.72e-02 34_[+1(4.40e-05)]_45 chr11:74944770-74944870 8.31e-08 11_[-1(2.20e-10)]_68 chr2:85685949-85686049 3.20e-02 44_[-2(5.88e-06)]_41 chr17:39136343-39136443 3.58e-01 100 chr5:9833079-9833179 4.94e-02 100 chr10:116678133-11667823 9.27e-01 100 chr3:105564362-105564462 2.47e-01 100 chr6:29634943-29635043 2.48e-01 100 chr10:91847480-91847580 6.49e-01 100 chr13:70197009-70197109 7.54e-02 32_[-2(4.70e-05)]_6_[-2(1.92e-05)]_\ 32 chr2:210655867-210655967 3.09e-03 9_[+2(1.09e-05)]_76 chr2:176717912-176718012 5.14e-01 100 chr13:51998760-51998860 1.96e-01 100 chr10:61899436-61899536 2.11e-01 100 chr16:11730077-11730177 1.08e-03 36_[-2(2.91e-05)]_49 chr22:39638906-39639006 4.16e-03 4_[+3(3.99e-05)]_35_[-3(2.88e-06)]_\ 3 chr8:118943042-118943142 3.46e-01 100 chr6:20868675-20868775 2.04e-02 49_[-2(1.09e-05)]_36 chr3:156233027-156233127 6.49e-01 100 chr1:81778126-81778226 8.25e-01 100 chr6:158956886-158956986 7.35e-01 100 chr3:151110959-151111059 8.33e-01 100 chr3:185911920-185912020 5.44e-03 22_[+2(9.36e-05)]_27_[+3(4.70e-05)]_\ 7 chr6:49879812-49879912 3.57e-01 100 chr5:98345740-98345840 4.44e-01 100 chr10:23460266-23460366 5.03e-02 100 chr13:74861045-74861145 7.78e-02 100 chr1:244067294-244067394 1.35e-01 100 chr2:171536840-171536940 4.19e-02 58_[-2(2.13e-05)]_27 chr5:68390382-68390482 4.58e-01 100 chr8:26435242-26435342 4.00e-08 [-2(2.52e-06)]_53_[-3(7.26e-08)]_3 chr6:126072359-126072459 9.11e-01 100 chr11:40700776-40700876 1.31e-03 63_[-2(1.13e-06)]_22 chr16:89103794-89103894 7.56e-02 100 chrX:8928869-8928969 1.67e-01 100 chr1:73452157-73452257 7.52e-01 100 chr3:71866447-71866547 7.77e-01 100 chr9:122133162-122133262 4.73e-02 100 chr12:76486224-76486324 1.50e-01 100 chr10:108294866-10829496 5.40e-02 100 chr2:63844746-63844846 5.18e-02 31_[+2(1.38e-05)]_54 chrX:106027132-106027232 9.59e-02 38_[+2(3.90e-05)]_15_[+2(3.90e-05)]_\ 17 chr18:45494472-45494572 2.19e-01 100 chr18:8006226-8006326 2.58e-01 100 chr3:187183282-187183382 6.12e-01 100 chr3:131424290-131424390 5.01e-01 100 chr1:147751685-147751785 4.18e-01 100 chr10:121890728-12189082 4.15e-05 18_[-1(1.37e-06)]_29_[-2(4.29e-05)]_\ 17 chr12:119591432-11959153 8.30e-04 4_[+3(2.48e-07)]_67 chr11:71162495-71162595 8.67e-01 100 chr11:83196185-83196285 8.23e-01 100 chr1:91390478-91390578 5.27e-01 100 chr15:89955993-89956093 2.82e-01 100 chr2:148206851-148206951 3.66e-01 100 chr13:81714736-81714836 7.64e-01 100 chr19:15126748-15126848 4.07e-07 67_[+1(3.09e-10)]_12 chr6:81041447-81041547 1.89e-03 57_[-2(5.13e-06)]_28 chr4:173672117-173672217 3.71e-01 100 chr17:65318234-65318334 7.83e-04 11_[-2(4.53e-07)]_74 chr6:90377847-90377947 2.27e-02 62_[-2(9.36e-05)]_23 chr1:68150672-68150772 3.15e-04 14_[-2(1.73e-05)]_71 chr1:237195311-237195411 2.03e-01 100 chr11:23994806-23994906 1.76e-04 2_[+1(3.77e-07)]_77 chr3:28119173-28119273 1.16e-01 100 chr2:85347002-85347102 3.50e-01 100 chr7:27960714-27960814 1.11e-01 100 chr2:162228329-162228429 9.60e-01 100 chr7:36320935-36321035 5.26e-02 8_[+1(8.77e-05)]_2_[+1(3.01e-05)]_\ 48 chr12:107312592-10731269 9.54e-01 100 chr1:64982578-64982678 8.20e-01 100 chr16:89992506-89992606 1.84e-04 7_[-3(2.89e-08)]_34_[+3(7.17e-05)]_\ 1 chr5:123774689-123774789 9.82e-02 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: surya.stanford.edu ********************************************************************************