# DREME 4.12.0 # command: dreme -v 1 -oc seqnotcut_memechip_out/dreme_out -png -dna -p seqnotcut_memechip_out/seqs-centered -n seqnotcut_memechip_out/seqs-shuffled # positives: 22935 from seqnotcut_memechip_out/seqs-centered (Mon Oct 28 20:53:16 PDT 2019) # negatives: 22935 from seqnotcut_memechip_out/seqs-shuffled (Mon Oct 28 20:53:17 PDT 2019) # host: indra.stanford.edu # when: Mon Oct 28 21:07:14 PDT 2019 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.213 C 0.288 G 0.287 T 0.213 MOTIF AGRDGGCR DREME-1 # Word RC Word Pos Neg P-value E-value # BEST AGRDGGCR YGCCHYCT 7515 1821 1.1e-1005 5.0e-1001 # AGGGGGCG CGCCCCCT 1069 146 3.2e-178 1.5e-173 # AGAGGGCA TGCCCTCT 1160 276 4.6e-133 2.1e-128 # AGGGGGCA TGCCCCCT 1225 332 2.1e-124 9.8e-120 # AGGTGGCA TGCCACCT 912 198 1.1e-112 5.0e-108 # AGAGGGCG CGCCCTCT 670 106 8.8e-103 4.0e-098 # AGGTGGCG CGCCACCT 587 81 3.9e-097 1.8e-092 # AGGAGGCG CGCCTCCT 528 102 2.3e-071 1.1e-066 # AGATGGCA TGCCATCT 540 121 3.4e-065 1.6e-060 # AGGAGGCA TGCCTCCT 737 264 1.1e-053 5.1e-049 # AGATGGCG CGCCATCT 302 38 8.3e-053 3.8e-048 # AGAAGGCG CGCCTTCT 86 54 4.2e-003 1.9e+002 # AGAAGGCA TGCCTTCT 224 175 7.8e-003 3.6e+002 letter-probability matrix: alength= 4 w= 8 nsites= 8099 E= 5.0e-1001 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.369922 0.000000 0.630078 0.000000 0.195580 0.000000 0.514508 0.289912 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.595876 0.000000 0.404124 0.000000 MOTIF CCASHAGR DREME-2 # Word RC Word Pos Neg P-value E-value # BEST CCASHAGR YCTDSTGG 5347 2207 1.2e-350 5.5e-346 # CCACTAGA TCTAGTGG 504 75 3.3e-080 1.5e-075 # CCACCAGG CCTGGTGG 962 311 4.9e-080 2.2e-075 # CCACTAGG CCTAGTGG 507 104 1.2e-065 5.5e-061 # CCAGCAGG CCTGCTGG 1095 478 5.4e-058 2.4e-053 # CCAGCAGA TCTGCTGG 678 312 9.2e-033 4.1e-028 # CCACCAGA TCTGGTGG 466 203 2.3e-025 1.1e-020 # CCAGTAGG CCTACTGG 281 104 2.3e-020 1.0e-015 # CCACAAGG CCTTGTGG 354 186 1.6e-013 7.2e-009 # CCAGTAGA TCTACTGG 180 82 6.0e-010 2.7e-005 # CCAGAAGG CCTTCTGG 290 213 3.2e-004 1.5e+001 # CCAGAAGA TCTTCTGG 199 142 1.1e-003 5.2e+001 # CCACAAGA TCTTGTGG 158 112 3.0e-003 1.3e+002 letter-probability matrix: alength= 4 w= 8 nsites= 5734 E= 5.5e-346 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.519184 0.480816 0.000000 0.174224 0.566969 0.000000 0.258807 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.382979 0.000000 0.617021 0.000000 MOTIF RKAAA DREME-3 # Word RC Word Pos Neg P-value E-value # BEST RKAAA TTTMY 10809 8232 3.3e-132 1.5e-127 # GGAAA TTTCC 5139 3652 4.1e-070 1.8e-065 # AGAAA TTTCT 5087 3642 1.1e-066 5.2e-062 # ATAAA TTTAT 1872 1343 1.9e-022 8.5e-018 # GTAAA TTTAC 1873 1404 9.7e-018 4.4e-013 letter-probability matrix: alength= 4 w= 5 nsites= 15689 E= 1.5e-127 0.499968 0.000000 0.500032 0.000000 0.000000 0.000000 0.744981 0.255019 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GCKCCMYC DREME-4 # Word RC Word Pos Neg P-value E-value # BEST GCKCCMYC GRKGGMGC 3073 1358 9.4e-166 4.1e-161 # GCTCCCTC GAGGGAGC 763 296 2.0e-049 8.6e-045 # GCGCCCCC GGGGGCGC 561 194 4.2e-043 1.8e-038 # GCGCCACC GGTGGCGC 236 67 1.1e-023 5.0e-019 # GCGCCCTC GAGGGCGC 323 126 1.7e-021 7.3e-017 # GCTCCCCC GGGGGAGC 642 360 8.3e-020 3.6e-015 # GCTCCACC GGTGGAGC 394 212 4.4e-014 1.9e-009 # GCGCCATC GATGGCGC 85 29 7.1e-008 3.1e-003 # GCTCCATC GATGGAGC 216 135 8.4e-006 3.7e-001 letter-probability matrix: alength= 4 w= 8 nsites= 3233 E= 4.1e-161 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.370554 0.629446 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.287659 0.712341 0.000000 0.000000 0.000000 0.570059 0.000000 0.429941 0.000000 1.000000 0.000000 0.000000 MOTIF CCTSYAG DREME-5 # Word RC Word Pos Neg P-value E-value # BEST CCTSYAG CTRSAGG 4258 2805 1.8e-079 7.6e-075 # CCTCTAG CTAGAGG 779 387 5.8e-032 2.5e-027 # CCTCCAG CTGGAGG 1591 1080 1.0e-024 4.4e-020 # CCTGCAG CTGCAGG 1667 1147 2.1e-024 9.3e-020 # CCTGTAG CTACAGG 479 323 1.5e-008 6.6e-004 letter-probability matrix: alength= 4 w= 7 nsites= 4671 E= 7.6e-075 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.521730 0.478270 0.000000 0.000000 0.727253 0.000000 0.272747 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF CRCCDCC DREME-6 # Word RC Word Pos Neg P-value E-value # BEST CRCCDCC GGHGGYG 3134 2069 6.0e-056 2.6e-051 # CGCCGCC GGCGGCG 811 477 1.5e-021 6.4e-017 # CGCCTCC GGAGGCG 511 269 8.7e-019 3.8e-014 # CACCACC GGTGGTG 784 509 4.3e-015 1.9e-010 # CACCTCC GGAGGTG 840 579 1.0e-012 4.5e-008 # CGCCACC GGTGGCG 249 127 1.3e-010 5.7e-006 # CACCGCC GGCGGTG 387 263 5.5e-007 2.4e-002 letter-probability matrix: alength= 4 w= 7 nsites= 3538 E= 2.6e-051 0.000000 1.000000 0.000000 0.000000 0.553137 0.000000 0.446863 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.273601 0.000000 0.346806 0.379593 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF ATTWY DREME-7 # Word RC Word Pos Neg P-value E-value # BEST ATTWY RWAAT 4669 3623 3.2e-037 1.4e-032 # ATTTT AAAAT 1994 1409 9.2e-026 4.0e-021 # ATTAC GTAAT 1324 999 2.4e-012 1.0e-007 # ATTTC GAAAT 994 806 3.4e-006 1.5e-001 # ATTAT ATAAT 1032 874 1.2e-004 5.1e+000 letter-probability matrix: alength= 4 w= 5 nsites= 5531 E= 1.4e-032 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.435364 0.000000 0.000000 0.564636 0.000000 0.432833 0.000000 0.567167 MOTIF RGGAA DREME-8 # Word RC Word Pos Neg P-value E-value # BEST RGGAA TTCCY 8079 6891 1.5e-032 6.1e-028 # AGGAA TTCCT 4452 3556 1.6e-028 6.6e-024 # GGGAA TTCCC 4534 3956 2.0e-012 8.3e-008 letter-probability matrix: alength= 4 w= 5 nsites= 9937 E= 6.1e-028 0.493107 0.000000 0.506893 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CTGYCWCC DREME-9 # Word RC Word Pos Neg P-value E-value # BEST CTGYCWCC GGWGRCAG 1160 684 3.6e-030 1.5e-025 # CTGCCACC GGTGGCAG 342 180 4.5e-013 1.9e-008 # CTGTCTCC GGAGACAG 287 161 1.2e-009 4.8e-005 # CTGCCTCC GGAGGCAG 391 242 1.3e-009 5.5e-005 # CTGTCACC GGTGACAG 157 112 3.5e-003 1.5e+002 letter-probability matrix: alength= 4 w= 8 nsites= 1188 E= 1.5e-025 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.622054 0.000000 0.377946 0.000000 1.000000 0.000000 0.000000 0.421717 0.000000 0.000000 0.578283 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF ACAGCRHC DREME-10 # Word RC Word Pos Neg P-value E-value # BEST ACAGCRHC GDYGCTGT 698 350 3.6e-028 1.5e-023 # ACAGCGCC GGCGCTGT 143 56 2.7e-010 1.1e-005 # ACAGCGAC GTCGCTGT 74 21 2.1e-008 8.5e-004 # ACAGCATC GATGCTGT 123 55 1.8e-007 7.3e-003 # ACAGCACC GGTGCTGT 201 117 1.3e-006 5.5e-002 # ACAGCGTC GACGCTGT 47 23 2.8e-003 1.1e+002 # ACAGCAAC GTTGCTGT 117 82 7.8e-003 3.2e+002 letter-probability matrix: alength= 4 w= 8 nsites= 706 E= 1.5e-023 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.624646 0.000000 0.375354 0.000000 0.269122 0.488669 0.000000 0.242210 0.000000 1.000000 0.000000 0.000000 MOTIF CTGCAG DREME-11 # Word RC Word Pos Neg P-value E-value # BEST CTGCAG CTGCAG 1376 916 2.9e-023 1.2e-018 # CTGCAG CTGCAG 1376 916 2.9e-023 1.2e-018 letter-probability matrix: alength= 4 w= 6 nsites= 1421 E= 1.2e-018 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF ACGTG DREME-12 # Word RC Word Pos Neg P-value E-value # BEST ACGTG CACGT 1180 761 1.1e-022 4.6e-018 # ACGTG CACGT 1180 761 1.1e-022 4.6e-018 letter-probability matrix: alength= 4 w= 5 nsites= 1222 E= 4.6e-018 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 MOTIF GYCACTGY DREME-13 # Word RC Word Pos Neg P-value E-value # BEST GYCACTGY RCAGTGRC 704 424 1.4e-017 5.8e-013 # GTCACTGT ACAGTGAC 135 53 9.0e-010 3.7e-005 # GCCACTGC GCAGTGGC 255 155 4.0e-007 1.6e-002 # GCCACTGT ACAGTGGC 187 124 2.0e-004 8.2e+000 # GTCACTGC GCAGTGAC 134 95 5.8e-003 2.4e+002 letter-probability matrix: alength= 4 w= 8 nsites= 714 E= 5.8e-013 0.000000 0.000000 1.000000 0.000000 0.000000 0.623249 0.000000 0.376751 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.549020 0.000000 0.450980 MOTIF CTACTGVC DREME-14 # Word RC Word Pos Neg P-value E-value # BEST CTACTGVC GBCAGTAG 395 199 2.2e-016 9.0e-012 # CTACTGGC GCCAGTAG 157 49 9.7e-015 3.9e-010 # CTACTGAC GTCAGTAG 103 59 3.3e-004 1.4e+001 # CTACTGCC GGCAGTAG 135 92 2.5e-003 1.0e+002 letter-probability matrix: alength= 4 w= 8 nsites= 396 E= 9.0e-012 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.260101 0.343434 0.396465 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF TGGGGGCR DREME-15 # Word RC Word Pos Neg P-value E-value # BEST TGGGGGCR YGCCCCCA 596 350 2.9e-016 1.2e-011 # TGGGGGCA TGCCCCCA 447 271 1.9e-011 7.6e-007 # TGGGGGCG CGCCCCCA 149 79 2.0e-006 8.0e-002 letter-probability matrix: alength= 4 w= 8 nsites= 599 E= 1.2e-011 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.751252 0.000000 0.248748 0.000000 MOTIF GCAGCVKC DREME-16 # Word RC Word Pos Neg P-value E-value # BEST GCAGCVKC GMBGCTGC 1395 1026 6.9e-015 2.8e-010 # GCAGCATC GATGCTGC 215 119 7.5e-008 3.1e-003 # GCAGCAGC GCTGCTGC 510 373 1.8e-006 7.4e-002 # GCAGCCGC GCGGCTGC 207 149 1.2e-003 4.8e+001 # GCAGCGGC GCCGCTGC 203 153 4.5e-003 1.8e+002 # GCAGCGTC GACGCTGC 87 57 7.6e-003 3.1e+002 # GCAGCCTC GAGGCTGC 282 227 8.0e-003 3.3e+002 letter-probability matrix: alength= 4 w= 8 nsites= 1465 E= 2.8e-010 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.484642 0.324915 0.190444 0.000000 0.000000 0.000000 0.608191 0.391809 0.000000 1.000000 0.000000 0.000000 MOTIF MCACAS DREME-17 # Word RC Word Pos Neg P-value E-value # BEST MCACAS STGTGK 6107 5416 5.4e-014 2.2e-009 # ACACAC GTGTGT 1121 895 1.4e-007 5.9e-003 # CCACAG CTGTGG 2743 2443 5.2e-006 2.1e-001 # ACACAG CTGTGT 1733 1492 5.8e-006 2.4e-001 # CCACAC GTGTGG 1712 1547 1.4e-003 5.8e+001 letter-probability matrix: alength= 4 w= 6 nsites= 7247 E= 2.2e-009 0.373534 0.626466 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.369532 0.630468 0.000000 MOTIF KTTAAAW DREME-18 # Word RC Word Pos Neg P-value E-value # BEST KTTAAAW WTTTAAM 428 235 2.0e-014 7.9e-010 # TTTAAAT ATTTAAA 138 60 1.4e-008 5.6e-004 # TTTAAAA TTTTAAA 146 74 6.5e-007 2.6e-002 # GTTAAAT ATTTAAC 104 63 9.2e-004 3.7e+001 # GTTAAAA TTTTAAC 90 54 1.7e-003 6.8e+001 letter-probability matrix: alength= 4 w= 7 nsites= 436 E= 7.9e-010 0.000000 0.000000 0.447248 0.552752 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.493119 0.000000 0.000000 0.506881 MOTIF AAMAMAAA DREME-19 # Word RC Word Pos Neg P-value E-value # BEST AAMAMAAA TTTKTKTT 338 176 3.0e-013 1.2e-008 # AAAAAAAA TTTTTTTT 125 50 6.3e-009 2.5e-004 # AAAACAAA TTTGTTTT 101 46 3.2e-006 1.3e-001 # AACACAAA TTTGTGTT 77 45 2.4e-003 9.6e+001 # AACAAAAA TTTTTGTT 74 43 2.6e-003 1.1e+002 letter-probability matrix: alength= 4 w= 8 nsites= 378 E= 1.2e-008 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.619048 0.380952 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.555556 0.444444 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AAATRY DREME-20 # Word RC Word Pos Neg P-value E-value # BEST AAATRY RYATTT 973 699 4.7e-012 1.9e-007 # AAATAC GTATTT 175 96 8.6e-007 3.5e-002 # AAATGT ACATTT 300 201 5.0e-006 2.0e-001 # AAATAT ATATTT 148 93 2.3e-004 9.3e+000 # AAATGC GCATTT 383 315 5.3e-003 2.1e+002 letter-probability matrix: alength= 4 w= 6 nsites= 1018 E= 1.9e-007 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.323183 0.000000 0.676817 0.000000 0.000000 0.554028 0.000000 0.445972 MOTIF CTGCCMTC DREME-21 # Word RC Word Pos Neg P-value E-value # BEST CTGCCMTC GAKGGCAG 503 311 5.8e-012 2.3e-007 # CTGCCCTC GAGGGCAG 358 221 5.5e-009 2.2e-004 # CTGCCATC GATGGCAG 148 91 1.3e-004 5.3e+000 letter-probability matrix: alength= 4 w= 8 nsites= 509 E= 2.3e-007 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.290766 0.709234 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 MOTIF TAGCGKTA DREME-22 # Word RC Word Pos Neg P-value E-value # BEST TAGCGKTA TAMCGCTA 52 5 3.1e-011 1.3e-006 # TAGCGGTA TACCGCTA 42 4 2.5e-009 1.0e-004 # TAGCGTTA TAACGCTA 11 1 3.2e-003 1.3e+002 letter-probability matrix: alength= 4 w= 8 nsites= 58 E= 1.3e-006 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.827586 0.172414 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 MOTIF TGTGACAA DREME-23 # Word RC Word Pos Neg P-value E-value # BEST TGTGACAA TTGTCACA 129 44 3.2e-011 1.3e-006 # TGTGACAA TTGTCACA 129 44 3.2e-011 1.3e-006 letter-probability matrix: alength= 4 w= 8 nsites= 129 E= 1.3e-006 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GHGGCCRC DREME-24 # Word RC Word Pos Neg P-value E-value # BEST GHGGCCRC GYGGCCDC 606 391 3.0e-012 1.2e-007 # GCGGCCGC GCGGCCGC 146 85 3.5e-005 1.4e+000 # GCGGCCAC GTGGCCGC 96 55 5.2e-004 2.1e+001 # GTGGCCAC GTGGCCAC 66 35 1.3e-003 5.3e+001 # GAGGCCGC GCGGCCTC 150 104 2.3e-003 9.1e+001 # GAGGCCAC GTGGCCTC 160 114 3.1e-003 1.3e+002 letter-probability matrix: alength= 4 w= 8 nsites= 622 E= 1.2e-007 0.000000 0.000000 1.000000 0.000000 0.503215 0.310289 0.000000 0.186495 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.438907 0.000000 0.561093 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CAGYAGAG DREME-25 # Word RC Word Pos Neg P-value E-value # BEST CAGYAGAG CTCTRCTG 391 231 5.5e-011 2.2e-006 # CAGCAGAG CTCTGCTG 334 200 3.0e-009 1.2e-004 # CAGTAGAG CTCTACTG 58 31 2.7e-003 1.1e+002 letter-probability matrix: alength= 4 w= 8 nsites= 396 E= 2.2e-006 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.853535 0.000000 0.146465 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF GACDCCA DREME-26 # Word RC Word Pos Neg P-value E-value # BEST GACDCCA TGGHGTC 940 708 3.2e-009 1.3e-004 # GACACCA TGGTGTC 408 282 7.6e-007 3.1e-002 # GACGCCA TGGCGTC 143 101 4.2e-003 1.7e+002 # GACTCCA TGGAGTC 397 330 6.8e-003 2.7e+002 letter-probability matrix: alength= 4 w= 7 nsites= 954 E= 1.3e-004 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.432914 0.000000 0.149895 0.417191 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GCBGGGA DREME-27 # Word RC Word Pos Neg P-value E-value # BEST GCBGGGA TCCCVGC 1241 979 6.6e-009 2.6e-004 # GCCGGGA TCCCGGC 333 245 1.3e-004 5.3e+000 # GCTGGGA TCCCAGC 636 522 3.8e-004 1.5e+001 # GCGGGGA TCCCCGC 302 225 4.3e-004 1.7e+001 letter-probability matrix: alength= 4 w= 7 nsites= 1288 E= 2.6e-004 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.262422 0.236801 0.500776 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CAKCCTCC DREME-28 # Word RC Word Pos Neg P-value E-value # BEST CAKCCTCC GGAGGMTG 413 276 8.2e-008 3.3e-003 # CAGCCTCC GGAGGCTG 267 182 3.2e-005 1.3e+000 # CATCCTCC GGAGGATG 147 95 4.9e-004 1.9e+001 letter-probability matrix: alength= 4 w= 8 nsites= 415 E= 3.3e-003 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.645783 0.354217 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF TGSTGACA DREME-29 # Word RC Word Pos Neg P-value E-value # BEST TGSTGACA TGTCASCA 251 148 1.3e-007 5.0e-003 # TGCTGACA TGTCAGCA 171 104 3.0e-005 1.2e+000 # TGGTGACA TGTCACCA 81 44 5.9e-004 2.3e+001 letter-probability matrix: alength= 4 w= 8 nsites= 253 E= 5.0e-003 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.679842 0.320158 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AYTCCAGC DREME-30 # Word RC Word Pos Neg P-value E-value # BEST AYTCCAGC GCTGGART 260 155 1.3e-007 5.1e-003 # ACTCCAGC GCTGGAGT 159 91 9.6e-006 3.8e-001 # ATTCCAGC GCTGGAAT 101 64 2.4e-003 9.7e+001 letter-probability matrix: alength= 4 w= 8 nsites= 262 E= 5.1e-003 1.000000 0.000000 0.000000 0.000000 0.000000 0.610687 0.000000 0.389313 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF AAACAKC DREME-31 # Word RC Word Pos Neg P-value E-value # BEST AAACAKC GMTGTTT 380 253 2.1e-007 8.4e-003 # AAACATC GATGTTT 151 77 5.1e-007 2.0e-002 # AAACAGC GCTGTTT 231 178 4.9e-003 1.9e+002 letter-probability matrix: alength= 4 w= 7 nsites= 382 E= 8.4e-003 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.604712 0.395288 0.000000 1.000000 0.000000 0.000000 MOTIF AGGGGTCR DREME-32 # Word RC Word Pos Neg P-value E-value # BEST AGGGGTCR YGACCCCT 253 154 4.7e-007 1.9e-002 # AGGGGTCA TGACCCCT 167 107 1.7e-004 6.7e+000 # AGGGGTCG CGACCCCT 86 47 4.5e-004 1.8e+001 letter-probability matrix: alength= 4 w= 8 nsites= 253 E= 1.9e-002 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.660079 0.000000 0.339921 0.000000 MOTIF KGGAGACA DREME-33 # Word RC Word Pos Neg P-value E-value # BEST KGGAGACA TGTCTCCM 219 129 7.4e-007 2.9e-002 # TGGAGACA TGTCTCCA 104 55 6.1e-005 2.4e+000 # GGGAGACA TGTCTCCC 115 74 1.7e-003 6.9e+001 letter-probability matrix: alength= 4 w= 8 nsites= 219 E= 2.9e-002 0.000000 0.000000 0.525114 0.474886 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 4458.14 seconds