# DREME 4.12.0 # command: dreme -v 1 -oc intersect_memechip_out/dreme_out -png -dna -p intersect_memechip_out/seqs-centered -n intersect_memechip_out/seqs-shuffled # positives: 33732 from intersect_memechip_out/seqs-centered (Mon Oct 28 20:52:18 PDT 2019) # negatives: 33732 from intersect_memechip_out/seqs-shuffled (Mon Oct 28 20:52:18 PDT 2019) # host: indra.stanford.edu # when: Mon Oct 28 21:04:56 PDT 2019 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.231 C 0.269 G 0.269 T 0.231 MOTIF AGRKGGCR DREME-1 # Word RC Word Pos Neg P-value E-value # BEST AGRKGGCR YGCCMYCT 14512 1521 2.5e-3365 1.1e-3360 # AGGGGGCG CGCCCCCT 2362 177 1.3e-503 5.9e-499 # AGAGGGCA TGCCCTCT 2469 310 2.2e-432 1.0e-427 # AGAGGGCG CGCCCTCT 1763 123 2.7e-381 1.2e-376 # AGGGGGCA TGCCCCCT 2453 386 4.2e-381 1.9e-376 # AGGTGGCA TGCCACCT 2144 268 1.1e-374 5.2e-370 # AGATGGCA TGCCATCT 1578 154 1.5e-304 6.8e-300 # AGGTGGCG CGCCACCT 1361 100 9.8e-289 4.5e-284 # AGATGGCG CGCCATCT 827 39 1.5e-195 7.0e-191 letter-probability matrix: alength= 4 w= 8 nsites= 15032 E= 1.1e-3360 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.442988 0.000000 0.557012 0.000000 0.000000 0.000000 0.605841 0.394159 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.578167 0.000000 0.421833 0.000000 MOTIF CCASYAGR DREME-2 # Word RC Word Pos Neg P-value E-value # BEST CCASYAGR YCTRSTGG 8044 1820 7.0e-1070 3.2e-1065 # CCACTAGG CCTAGTGG 1464 127 1.3e-294 5.7e-290 # CCACTAGA TCTAGTGG 1217 103 1.8e-246 8.2e-242 # CCACCAGG CCTGGTGG 1689 350 5.4e-216 2.5e-211 # CCAGCAGG CCTGCTGG 1482 516 4.0e-111 1.8e-106 # CCACCAGA TCTGGTGG 771 210 3.4e-077 1.6e-072 # CCAGCAGA TCTGCTGG 847 307 3.9e-060 1.8e-055 # CCAGTAGG CCTACTGG 492 146 2.1e-045 9.4e-041 # CCAGTAGA TCTACTGG 317 102 3.4e-027 1.6e-022 letter-probability matrix: alength= 4 w= 8 nsites= 8338 E= 3.2e-1065 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.620772 0.379228 0.000000 0.000000 0.578436 0.000000 0.421564 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.381266 0.000000 0.618734 0.000000 MOTIF DTTTCY DREME-3 # Word RC Word Pos Neg P-value E-value # BEST DTTTCY RGAAAH 12015 8034 5.4e-248 2.5e-243 # TTTTCT AGAAAA 3328 2075 2.0e-071 8.9e-067 # ATTTCT AGAAAT 2261 1330 3.6e-058 1.6e-053 # ATTTCC GGAAAT 2101 1212 2.6e-057 1.2e-052 # TTTTCC GGAAAA 2800 1771 1.3e-056 6.0e-052 # GTTTCC GGAAAC 1990 1356 1.1e-029 4.9e-025 # GTTTCT AGAAAC 2197 1538 5.9e-029 2.7e-024 letter-probability matrix: alength= 4 w= 6 nsites= 15317 E= 2.5e-243 0.294379 0.000000 0.281256 0.424365 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.465431 0.000000 0.534569 MOTIF AGRKGGAG DREME-4 # Word RC Word Pos Neg P-value E-value # BEST AGRKGGAG CTCCMYCT 2568 1089 1.9e-143 8.3e-139 # AGAGGGAG CTCCCTCT 1000 335 7.5e-079 3.4e-074 # AGGGGGAG CTCCCCCT 915 379 9.5e-053 4.3e-048 # AGGTGGAG CTCCACCT 446 235 1.8e-016 8.0e-012 # AGATGGAG CTCCATCT 256 159 1.0e-006 4.6e-002 letter-probability matrix: alength= 4 w= 8 nsites= 2634 E= 8.3e-139 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.481777 0.000000 0.518223 0.000000 0.000000 0.000000 0.733485 0.266515 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF BGTGGY DREME-5 # Word RC Word Pos Neg P-value E-value # BEST BGTGGY RCCACV 11528 8704 5.6e-125 2.5e-120 # GGTGGC GCCACC 3455 2411 1.3e-046 6.0e-042 # TGTGGT ACCACA 2665 1775 6.6e-044 3.0e-039 # TGTGGC GCCACA 3483 2567 2.4e-035 1.1e-030 # GGTGGT ACCACC 2328 1681 2.8e-026 1.2e-021 # CGTGGT ACCACG 700 530 5.6e-007 2.5e-002 # CGTGGC GCCACG 1116 952 1.4e-004 6.0e+000 letter-probability matrix: alength= 4 w= 6 nsites= 13921 E= 2.5e-120 0.000000 0.129157 0.415703 0.455140 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.591480 0.000000 0.408520 MOTIF ATTHY DREME-6 # Word RC Word Pos Neg P-value E-value # BEST ATTHY RDAAT 16343 13902 5.9e-080 2.6e-075 # ATTTT AAAAT 5454 4282 4.7e-038 2.1e-033 # ATTTC GAAAT 2255 1575 4.9e-030 2.2e-025 # ATTAC GTAAT 3111 2348 2.3e-027 1.0e-022 # ATTCC GGAAT 4972 4143 5.2e-021 2.3e-016 # ATTCT AGAAT 5254 4517 4.0e-016 1.8e-011 # ATTAT ATAAT 2672 2485 3.5e-003 1.6e+002 letter-probability matrix: alength= 4 w= 5 nsites= 24800 E= 2.6e-075 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.231371 0.431008 0.000000 0.337621 0.000000 0.426371 0.000000 0.573629 MOTIF GCGCCBCC DREME-7 # Word RC Word Pos Neg P-value E-value # BEST GCGCCBCC GGVGGCGC 1342 591 4.2e-069 1.8e-064 # GCGCCCCC GGGGGCGC 525 218 1.1e-030 4.7e-026 # GCGCCTCC GGAGGCGC 471 185 3.0e-030 1.3e-025 # GCGCCGCC GGCGGCGC 394 215 1.5e-013 6.2e-009 letter-probability matrix: alength= 4 w= 8 nsites= 1410 E= 1.8e-064 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.379433 0.282979 0.337589 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CKBCCTCC DREME-8 # Word RC Word Pos Neg P-value E-value # BEST CKBCCTCC GGAGGVMG 2269 1275 6.1e-067 2.6e-062 # CTGCCTCC GGAGGCAG 724 372 2.1e-027 8.8e-023 # CTTCCTCC GGAGGAAG 413 216 1.2e-015 5.2e-011 # CGCCCTCC GGAGGGCG 357 193 1.0e-012 4.4e-008 # CTCCCTCC GGAGGGAG 521 333 5.1e-011 2.1e-006 # CGGCCTCC GGAGGCCG 232 132 8.3e-008 3.5e-003 # CGTCCTCC GGAGGACG 107 68 1.9e-003 8.2e+001 letter-probability matrix: alength= 4 w= 8 nsites= 2345 E= 2.6e-062 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.298081 0.701919 0.000000 0.373134 0.407676 0.219190 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF RGRAA DREME-9 # Word RC Word Pos Neg P-value E-value # BEST RGRAA TTYCY 13038 11051 1.1e-057 4.7e-053 # AGGAA TTCCT 5730 4589 1.5e-034 6.2e-030 # GGGAA TTCCC 5822 4882 2.1e-023 8.7e-019 # GGAAA TTTCC 2789 2192 7.9e-019 3.3e-014 # AGAAA TTTCT 2864 2312 7.5e-016 3.1e-011 letter-probability matrix: alength= 4 w= 5 nsites= 16593 E= 4.7e-053 0.522690 0.000000 0.477310 0.000000 0.000000 0.000000 1.000000 0.000000 0.295667 0.000000 0.704333 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CCKCYAGG DREME-10 # Word RC Word Pos Neg P-value E-value # BEST CCKCYAGG CCTRGMGG 1259 640 5.0e-048 2.1e-043 # CCTCTAGG CCTAGAGG 353 141 1.8e-022 7.5e-018 # CCGCTAGG CCTAGCGG 169 55 5.1e-015 2.1e-010 # CCGCCAGG CCTGGCGG 347 175 1.7e-014 7.0e-010 # CCTCCAGG CCTGGAGG 417 274 2.5e-008 1.1e-003 letter-probability matrix: alength= 4 w= 8 nsites= 1295 E= 2.1e-043 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.403089 0.596911 0.000000 1.000000 0.000000 0.000000 0.000000 0.593050 0.000000 0.406950 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF CTGYAGK DREME-11 # Word RC Word Pos Neg P-value E-value # BEST CTGYAGK MCTRCAG 3332 2297 1.6e-047 6.6e-043 # CTGCAGT ACTGCAG 1265 762 2.7e-030 1.1e-025 # CTGCAGG CCTGCAG 1585 1124 7.7e-020 3.2e-015 # CTGTAGG CCTACAG 555 383 8.6e-009 3.6e-004 # CTGTAGT ACTACAG 411 323 6.1e-004 2.5e+001 letter-probability matrix: alength= 4 w= 7 nsites= 3515 E= 6.6e-043 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.722902 0.000000 0.277098 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.574395 0.425605 MOTIF GTCRCTGY DREME-12 # Word RC Word Pos Neg P-value E-value # BEST GTCRCTGY RCAGYGAC 679 311 6.7e-033 2.8e-028 # GTCGCTGT ACAGCGAC 146 25 2.5e-022 1.0e-017 # GTCACTGT ACAGTGAC 223 101 4.6e-012 1.9e-007 # GTCACTGC GCAGTGAC 209 123 1.3e-006 5.3e-002 # GTCGCTGC GCAGCGAC 107 63 4.5e-004 1.9e+001 letter-probability matrix: alength= 4 w= 8 nsites= 687 E= 2.8e-028 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.631732 0.000000 0.368268 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.461426 0.000000 0.538574 MOTIF ATTTAH DREME-13 # Word RC Word Pos Neg P-value E-value # BEST ATTTAH DTAAAT 2719 2018 2.2e-026 8.8e-022 # ATTTAT ATAAAT 916 592 1.5e-017 6.3e-013 # ATTTAC GTAAAT 906 669 8.3e-010 3.4e-005 # ATTTAA TTAAAT 1032 866 6.1e-005 2.5e+000 letter-probability matrix: alength= 4 w= 6 nsites= 2915 E= 8.8e-022 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.362950 0.315609 0.000000 0.321441 MOTIF GTGGHCA DREME-14 # Word RC Word Pos Neg P-value E-value # BEST GTGGHCA TGDCCAC 1137 698 1.1e-025 4.3e-021 # GTGGCCA TGGCCAC 376 193 5.4e-015 2.2e-010 # GTGGTCA TGACCAC 229 116 5.3e-010 2.2e-005 # GTGGACA TGTCCAC 544 395 5.5e-007 2.2e-002 letter-probability matrix: alength= 4 w= 7 nsites= 1156 E= 4.3e-021 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.475779 0.326125 0.000000 0.198097 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GAKGGYGC DREME-15 # Word RC Word Pos Neg P-value E-value # BEST GAKGGYGC GCRCCMTC 759 417 2.7e-024 1.1e-019 # GATGGTGC GCACCATC 204 97 3.1e-010 1.2e-005 # GAGGGTGC GCACCCTC 321 200 5.8e-008 2.4e-003 # GAGGGCGC GCGCCCTC 160 83 4.2e-007 1.7e-002 # GATGGCGC GCGCCATC 85 40 3.5e-005 1.4e+000 letter-probability matrix: alength= 4 w= 8 nsites= 770 E= 1.1e-019 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.622078 0.377922 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.315584 0.000000 0.684416 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF AAAAMAAA DREME-16 # Word RC Word Pos Neg P-value E-value # BEST AAAAMAAA TTTKTTTT 536 269 8.7e-022 3.6e-017 # AAAAAAAA TTTTTTTT 304 132 4.2e-017 1.7e-012 # AAAACAAA TTTGTTTT 254 145 2.4e-008 9.9e-004 letter-probability matrix: alength= 4 w= 8 nsites= 608 E= 3.6e-017 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.570724 0.429276 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF RGWGACA DREME-17 # Word RC Word Pos Neg P-value E-value # BEST RGWGACA TGTCWCY 2348 1785 8.2e-020 3.3e-015 # GGTGACA TGTCACC 517 365 1.4e-007 5.9e-003 # AGTGACA TGTCACT 545 403 1.9e-006 7.8e-002 # AGAGACA TGTCTCT 668 522 1.1e-005 4.4e-001 # GGAGACA TGTCTCC 682 537 1.5e-005 6.3e-001 letter-probability matrix: alength= 4 w= 7 nsites= 2438 E= 3.3e-015 0.500820 0.000000 0.499180 0.000000 0.000000 0.000000 1.000000 0.000000 0.558244 0.000000 0.000000 0.441756 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF RAACWGCA DREME-18 # Word RC Word Pos Neg P-value E-value # BEST RAACWGCA TGCWGTTY 681 395 6.3e-019 2.6e-014 # GAACTGCA TGCAGTTC 187 72 2.6e-013 1.1e-008 # AAACTGCA TGCAGTTT 159 87 2.5e-006 1.0e-001 # GAACAGCA TGCTGTTC 161 110 1.1e-003 4.6e+001 # AAACAGCA TGCTGTTT 179 128 2.1e-003 8.5e+001 letter-probability matrix: alength= 4 w= 8 nsites= 687 E= 2.6e-014 0.494905 0.000000 0.505095 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.496361 0.000000 0.000000 0.503639 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CBGCCGCC DREME-19 # Word RC Word Pos Neg P-value E-value # BEST CBGCCGCC GGCGGCVG 751 474 6.7e-016 2.7e-011 # CGGCCGCC GGCGGCCG 288 171 2.4e-008 9.6e-004 # CTGCCGCC GGCGGCAG 257 159 8.3e-007 3.4e-002 # CCGCCGCC GGCGGCGG 254 174 6.1e-005 2.5e+000 letter-probability matrix: alength= 4 w= 8 nsites= 797 E= 2.7e-011 0.000000 1.000000 0.000000 0.000000 0.000000 0.317440 0.360100 0.322459 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CCCCGCCC DREME-20 # Word RC Word Pos Neg P-value E-value # BEST CCCCGCCC GGGCGGGG 385 207 9.1e-014 3.7e-009 # CCCCGCCC GGGCGGGG 385 207 9.1e-014 3.7e-009 letter-probability matrix: alength= 4 w= 8 nsites= 404 E= 3.7e-009 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF AAATAH DREME-21 # Word RC Word Pos Neg P-value E-value # BEST AAATAH DTATTT 1064 759 2.3e-013 9.5e-009 # AAATAC GTATTT 380 239 6.9e-009 2.8e-004 # AAATAT ATATTT 342 255 2.0e-004 8.1e+000 # AAATAA TTATTT 364 280 5.0e-004 2.0e+001 letter-probability matrix: alength= 4 w= 6 nsites= 1094 E= 9.5e-009 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.337294 0.348263 0.000000 0.314442 MOTIF GSTGCTGY DREME-22 # Word RC Word Pos Neg P-value E-value # BEST GSTGCTGY RCAGCASC 1196 876 5.0e-013 2.0e-008 # GCTGCTGC GCAGCAGC 488 365 1.3e-005 5.2e-001 # GGTGCTGT ACAGCACC 197 128 7.4e-005 3.0e+000 # GCTGCTGT ACAGCAGC 285 208 2.9e-004 1.2e+001 # GGTGCTGC GCAGCACC 276 211 1.8e-003 7.2e+001 letter-probability matrix: alength= 4 w= 8 nsites= 1228 E= 2.0e-008 0.000000 0.000000 1.000000 0.000000 0.000000 0.619707 0.380293 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.617264 0.000000 0.382736 MOTIF CAGCRTC DREME-23 # Word RC Word Pos Neg P-value E-value # BEST CAGCRTC GAYGCTG 929 669 2.5e-011 1.0e-006 # CAGCATC GATGCTG 639 467 1.0e-007 4.2e-003 # CAGCGTC GACGCTG 294 208 6.8e-005 2.7e+000 letter-probability matrix: alength= 4 w= 7 nsites= 939 E= 1.0e-006 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.686901 0.000000 0.313099 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CCGCTAGA DREME-24 # Word RC Word Pos Neg P-value E-value # BEST CCGCTAGA TCTAGCGG 91 23 4.5e-011 1.8e-006 # CCGCTAGA TCTAGCGG 91 23 4.5e-011 1.8e-006 letter-probability matrix: alength= 4 w= 8 nsites= 91 E= 1.8e-006 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF ACTGACA DREME-25 # Word RC Word Pos Neg P-value E-value # BEST ACTGACA TGTCAGT 610 406 6.1e-011 2.4e-006 # ACTGACA TGTCAGT 610 406 6.1e-011 2.4e-006 letter-probability matrix: alength= 4 w= 7 nsites= 612 E= 2.4e-006 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CGBCTCC DREME-26 # Word RC Word Pos Neg P-value E-value # BEST CGBCTCC GGAGVCG 1199 910 8.8e-011 3.6e-006 # CGCCTCC GGAGGCG 435 309 1.9e-006 7.8e-002 # CGTCTCC GGAGACG 234 157 5.5e-005 2.2e+000 # CGGCTCC GGAGCCG 565 461 5.9e-004 2.4e+001 letter-probability matrix: alength= 4 w= 7 nsites= 1264 E= 3.6e-006 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.351266 0.465190 0.183544 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF GCRGCCRC DREME-27 # Word RC Word Pos Neg P-value E-value # BEST GCRGCCRC GYGGCYGC 459 292 4.8e-010 1.9e-005 # GCGGCCAC GTGGCCGC 56 19 1.1e-005 4.5e-001 # GCAGCCAC GTGGCTGC 95 53 3.4e-004 1.4e+001 # GCGGCCGC GCGGCCGC 79 47 2.7e-003 1.1e+002 # GCAGCCGC GCGGCTGC 233 180 5.1e-003 2.1e+002 letter-probability matrix: alength= 4 w= 8 nsites= 466 E= 1.9e-005 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.710300 0.000000 0.289700 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.324034 0.000000 0.675966 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF TTTTAWA DREME-28 # Word RC Word Pos Neg P-value E-value # BEST TTTTAWA TWTAAAA 476 311 1.8e-009 7.3e-005 # TTTTAAA TTTAAAA 279 174 4.2e-007 1.7e-002 # TTTTATA TATAAAA 201 137 2.9e-004 1.2e+001 letter-probability matrix: alength= 4 w= 7 nsites= 482 E= 7.3e-005 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.582988 0.000000 0.000000 0.417012 1.000000 0.000000 0.000000 0.000000 MOTIF AGAGGCCA DREME-29 # Word RC Word Pos Neg P-value E-value # BEST AGAGGCCA TGGCCTCT 325 199 1.8e-008 7.3e-004 # AGAGGCCA TGGCCTCT 325 199 1.8e-008 7.3e-004 letter-probability matrix: alength= 4 w= 8 nsites= 326 E= 7.3e-004 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GWAAACA DREME-30 # Word RC Word Pos Neg P-value E-value # BEST GWAAACA TGTTTWC 508 348 2.1e-008 8.4e-004 # GAAAACA TGTTTTC 216 125 4.5e-007 1.8e-002 # GTAAACA TGTTTAC 294 223 9.9e-004 4.0e+001 letter-probability matrix: alength= 4 w= 7 nsites= 513 E= 8.4e-004 0.000000 0.000000 1.000000 0.000000 0.423002 0.000000 0.000000 0.576998 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GGACRC DREME-31 # Word RC Word Pos Neg P-value E-value # BEST GGACRC GYGTCC 2416 2062 2.4e-008 9.5e-004 # GGACGC GCGTCC 879 696 1.7e-006 6.8e-002 # GGACAC GTGTCC 1576 1393 3.2e-004 1.3e+001 letter-probability matrix: alength= 4 w= 6 nsites= 2514 E= 9.5e-004 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.638027 0.000000 0.361973 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF GCAGTWCC DREME-32 # Word RC Word Pos Neg P-value E-value # BEST GCAGTWCC GGWACTGC 199 105 3.6e-008 1.4e-003 # GCAGTACC GGTACTGC 132 76 6.1e-005 2.5e+000 # GCAGTTCC GGAACTGC 67 29 6.5e-005 2.6e+000 letter-probability matrix: alength= 4 w= 8 nsites= 199 E= 1.4e-003 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.663317 0.000000 0.000000 0.336683 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CGTBTTC DREME-33 # Word RC Word Pos Neg P-value E-value # BEST CGTBTTC GAAVACG 290 174 3.6e-008 1.5e-003 # CGTCTTC GAAGACG 123 71 1.1e-004 4.6e+000 # CGTGTTC GAACACG 101 62 1.4e-003 5.6e+001 # CGTTTTC GAAAACG 66 41 9.9e-003 4.0e+002 letter-probability matrix: alength= 4 w= 7 nsites= 291 E= 1.5e-003 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.422680 0.350515 0.226804 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 MOTIF ACASACAC DREME-34 # Word RC Word Pos Neg P-value E-value # BEST ACASACAC GTGTSTGT 297 182 7.5e-008 3.0e-003 # ACACACAC GTGTGTGT 169 95 3.0e-006 1.2e-001 # ACAGACAC GTGTCTGT 130 88 2.6e-003 1.1e+002 letter-probability matrix: alength= 4 w= 8 nsites= 337 E= 3.0e-003 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.608309 0.391691 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF GTAACA DREME-35 # Word RC Word Pos Neg P-value E-value # BEST GTAACA TGTTAC 948 739 1.4e-007 5.7e-003 # GTAACA TGTTAC 948 739 1.4e-007 5.7e-003 letter-probability matrix: alength= 4 w= 6 nsites= 957 E= 5.7e-003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CCACTGGR DREME-36 # Word RC Word Pos Neg P-value E-value # BEST CCACTGGR YCCAGTGG 563 408 3.1e-007 1.2e-002 # CCACTGGG CCCAGTGG 356 257 3.4e-005 1.4e+000 # CCACTGGA TCCAGTGG 208 153 2.2e-003 8.6e+001 letter-probability matrix: alength= 4 w= 8 nsites= 566 E= 1.2e-002 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.371025 0.000000 0.628975 0.000000 MOTIF CTCTGCWG DREME-37 # Word RC Word Pos Neg P-value E-value # BEST CTCTGCWG CWGCAGAG 546 395 4.0e-007 1.6e-002 # CTCTGCAG CTGCAGAG 202 134 1.2e-004 4.8e+000 # CTCTGCTG CAGCAGAG 347 264 4.2e-004 1.7e+001 letter-probability matrix: alength= 4 w= 8 nsites= 549 E= 1.6e-002 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.367942 0.000000 0.000000 0.632058 0.000000 0.000000 1.000000 0.000000 MOTIF CDCTTCC DREME-38 # Word RC Word Pos Neg P-value E-value # BEST CDCTTCC GGAAGHG 682 513 4.5e-007 1.8e-002 # CACTTCC GGAAGTG 273 197 2.5e-004 1.0e+001 # CGCTTCC GGAAGCG 129 89 4.0e-003 1.6e+002 # CTCTTCC GGAAGAG 286 230 7.5e-003 3.0e+002 letter-probability matrix: alength= 4 w= 7 nsites= 692 E= 1.8e-002 0.000000 1.000000 0.000000 0.000000 0.395954 0.000000 0.187861 0.416185 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF GCWCCTCC DREME-39 # Word RC Word Pos Neg P-value E-value # BEST GCWCCTCC GGAGGWGC 561 413 1.0e-006 4.0e-002 # GCTCCTCC GGAGGAGC 340 247 6.6e-005 2.7e+000 # GCACCTCC GGAGGTGC 223 168 3.0e-003 1.2e+002 letter-probability matrix: alength= 4 w= 8 nsites= 565 E= 4.0e-002 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.396460 0.000000 0.000000 0.603540 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CACGTK DREME-40 # Word RC Word Pos Neg P-value E-value # BEST CACGTK MACGTG 540 394 8.5e-007 3.4e-002 # CACGTT AACGTG 311 224 9.2e-005 3.7e+000 # CACGTG CACGTG 230 171 1.8e-003 7.2e+001 letter-probability matrix: alength= 4 w= 6 nsites= 544 E= 3.4e-002 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.424632 0.575368 MOTIF ATCACMGC DREME-41 # Word RC Word Pos Neg P-value E-value # BEST ATCACMGC GCKGTGAT 173 95 1.0e-006 4.2e-002 # ATCACAGC GCTGTGAT 137 79 4.7e-005 1.9e+000 # ATCACCGC GCGGTGAT 36 16 3.9e-003 1.5e+002 letter-probability matrix: alength= 4 w= 8 nsites= 173 E= 4.2e-002 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.791908 0.208092 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 6993.74 seconds