******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= cutnotseq_memechip_out/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr12:17504891-17504991 1.0000 100 chr1:154539852-154539952 1.0000 100 chr22:36310345-36310445 1.0000 100 chr1:62365255-62365355 1.0000 100 chr13:111528748-11152884 1.0000 100 chr7:103213765-103213865 1.0000 100 chr17:37845125-37845225 1.0000 100 chr7:138794251-138794351 1.0000 100 chrX:37920246-37920346 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1.0000 100 chr16:6327864-6327964 1.0000 100 chr2:729141-729241 1.0000 100 chr3:85353133-85353233 1.0000 100 chr12:55391640-55391740 1.0000 100 chr17:40575135-40575235 1.0000 100 chr6:31707164-31707264 1.0000 100 chr9:108633336-108633436 1.0000 100 chr6:70439716-70439816 1.0000 100 chr1:234508838-234508938 1.0000 100 chr7:98297310-98297410 1.0000 100 chr5:115174818-115174918 1.0000 100 chr16:21964246-21964346 1.0000 100 chr1:156289337-156289437 1.0000 100 chr14:24861746-24861846 1.0000 100 chr12:83075845-83075945 1.0000 100 chr19:18384928-18385028 1.0000 100 chr3:159928510-159928610 1.0000 100 chr4:83955986-83956086 1.0000 100 chr7:155387364-155387464 1.0000 100 chr8:23896705-23896805 1.0000 100 chr21:45661185-45661285 1.0000 100 chr12:50444737-50444837 1.0000 100 chr19:50879857-50879957 1.0000 100 chr6:127623586-127623686 1.0000 100 chr8:120875095-120875195 1.0000 100 chr2:97202164-97202264 1.0000 100 chr19:49956376-49956476 1.0000 100 chr22:37307600-37307700 1.0000 100 chr13:21140843-21140943 1.0000 100 chr14:106877040-10687714 1.0000 100 chr5:126632858-126632958 1.0000 100 chr11:32681170-32681270 1.0000 100 chr10:33294486-33294586 1.0000 100 chr16:29822455-29822555 1.0000 100 chr3:194981191-194981291 1.0000 100 chr3:73674324-73674424 1.0000 100 chr12:51632222-51632322 1.0000 100 chr11:57092272-57092372 1.0000 100 chr10:30073135-30073235 1.0000 100 chr6:110057645-110057745 1.0000 100 chr1:24790050-24790150 1.0000 100 chr11:78125439-78125539 1.0000 100 chr1:236292495-236292595 1.0000 100 chr3:124079469-124079569 1.0000 100 chr2:84743141-84743241 1.0000 100 chr1:158161059-158161159 1.0000 100 chr11:62320666-62320766 1.0000 100 chr19:46318756-46318856 1.0000 100 chr17:43098002-43098102 1.0000 100 chr2:220324684-220324784 1.0000 100 chr5:150875563-150875663 1.0000 100 chr6:26594159-26594259 1.0000 100 chr9:129623965-129624065 1.0000 100 chr7:134201200-134201300 1.0000 100 chr5:157391731-157391831 1.0000 100 chr7:106808324-106808424 1.0000 100 chr12:107117035-10711713 1.0000 100 chr6:41393921-41394021 1.0000 100 chr8:105504421-105504521 1.0000 100 chr3:191109708-191109808 1.0000 100 chr5:74501298-74501398 1.0000 100 chr12:87346537-87346637 1.0000 100 chr5:139496132-139496232 1.0000 100 chr4:164477034-164477134 1.0000 100 chr3:137816552-137816652 1.0000 100 chr11:75054270-75054370 1.0000 100 chr1:21636567-21636667 1.0000 100 chr14:70540993-70541093 1.0000 100 chr8:8897621-8897721 1.0000 100 chr17:76370494-76370594 1.0000 100 chr11:104022175-10402227 1.0000 100 chr4:78076706-78076806 1.0000 100 chr6:116538099-116538199 1.0000 100 chr5:58613115-58613215 1.0000 100 chr7:149781772-149781872 1.0000 100 chr12:93813312-93813412 1.0000 100 chr12:113261412-11326151 1.0000 100 chrX:53220031-53220131 1.0000 100 chr13:48172253-48172353 1.0000 100 chr11:118779557-11877965 1.0000 100 chr17:63557572-63557672 1.0000 100 chr2:238009579-238009679 1.0000 100 chr2:80297546-80297646 1.0000 100 chr10:4856705-4856805 1.0000 100 chr19:13858244-13858344 1.0000 100 chr11:57267208-57267308 1.0000 100 chr17:40559271-40559371 1.0000 100 chr19:46002690-46002790 1.0000 100 chr19:49479337-49479437 1.0000 100 chr16:11349826-11349926 1.0000 100 chr22:34225589-34225689 1.0000 100 chr19:42070066-42070166 1.0000 100 chr12:70133391-70133491 1.0000 100 chr6:166814614-166814714 1.0000 100 chr19:55598045-55598145 1.0000 100 chr1:14138003-14138103 1.0000 100 chr19:18303436-18303536 1.0000 100 chr12:119615934-11961603 1.0000 100 chr7:31602002-31602102 1.0000 100 chr2:150385115-150385215 1.0000 100 chr20:48595366-48595466 1.0000 100 chr3:32388889-32388989 1.0000 100 chr19:12904489-12904589 1.0000 100 chr1:150459534-150459634 1.0000 100 chr9:19102554-19102654 1.0000 100 chr12:123458870-12345897 1.0000 100 chr14:35874117-35874217 1.0000 100 chr1:119025630-119025730 1.0000 100 chr1:32110376-32110476 1.0000 100 chr19:12791708-12791808 1.0000 100 chr2:70955190-70955290 1.0000 100 chr7:99647005-99647105 1.0000 100 chr6:36816519-36816619 1.0000 100 chr2:156225267-156225367 1.0000 100 chr4:26031599-26031699 1.0000 100 chr17:21029930-21030030 1.0000 100 chr5:45774642-45774742 1.0000 100 chr9:117424667-117424767 1.0000 100 chr9:35616592-35616692 1.0000 100 chr1:175301404-175301504 1.0000 100 chr1:221064346-221064446 1.0000 100 chr15:57947887-57947987 1.0000 100 chr1:205413759-205413859 1.0000 100 chr9:14748555-14748655 1.0000 100 chr11:199644-199744 1.0000 100 chr20:35214105-35214205 1.0000 100 chr14:22771348-22771448 1.0000 100 chr2:67556897-67556997 1.0000 100 chr5:172565565-172565665 1.0000 100 chr9:4985515-4985615 1.0000 100 chr6:42714051-42714151 1.0000 100 chr3:42932338-42932438 1.0000 100 chr19:38717176-38717276 1.0000 100 chr1:154118281-154118381 1.0000 100 chr15:43213112-43213212 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme cutnotseq_memechip_out/seqs-sampled -oc cutnotseq_memechip_out/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile cutnotseq_memechip_out/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.254 C 0.246 G 0.246 T 0.254 Background letter frequencies (from cutnotseq_memechip_out/background): A 0.260 C 0.240 G 0.240 T 0.260 ******************************************************************************** ******************************************************************************** MOTIF GGSSGGGSSGGRGSHGGVGGVRGGGSVGGG MEME-1 width = 30 sites = 113 llr = 1277 E-value = 6.8e-096 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGSSGGGSSGGRGSHGGVGGVRGGGSVGGG MEME-1 Description -------------------------------------------------------------------------------- Simplified A 21:121121223114:131133221:311: pos.-specific C 2244:1153211232124115122243232 probability G 664486835666651862763555664768 matrix T :121:2:11:1::1311112:1111:11:: bits 2.1 1.9 1.6 1.4 Relative 1.2 * * * Entropy 1.0 * * * * (16.3 bits) 0.8 * * * * * 0.6 *** * * * ** * * ** *** 0.4 *** *** ****** ** ***** ** *** 0.2 ************** *************** 0.0 ------------------------------ Multilevel GGCGGGGCGGGGGGAGGCGGCGGGGGGGGG consensus CCGCA GC AACCT A GACC CA C sequence A C G A A C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGSSGGGSSGGRGSHGGVGGVRGGGSVGGG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chr19:10046762-10046862 - 40 3.43e-12 TCCCGGCCGC CGGCGAGGCGGGGGAGGCGGCGGCGCAGGG TCGCCCCGGC chr13:21140843-21140943 - 58 1.51e-10 AGTCCTCCGC GCGGGGGCGGGCGGGGCCGGAAGCGCGGGG GCGGGAGAGA chr5:55290787-55290887 - 36 1.81e-10 CTGGCGAGAA GGGAGGGCGGGGGCAGCGGGCGGCGGGCAG CACCCGGGCT chr19:46087480-46087580 - 13 8.53e-10 TGGCCCAGTA GTGAGGGCGGGGCGGGGCGTAAGGGGCGGG TCAAGGAGCC chr3:197686814-197686914 + 5 1.01e-09 TCAG GCCCGGGCCGGAGCCGGTGGCGCTGGAGCG GGTCTGTGTG chr1:202162569-202162669 - 52 1.64e-09 GGCTCTATTG GGCGGCGGCGGCGGCGGTGGGAGCGCCGGG ACGGTGCAGT chr11:118306613-11830671 + 7 1.92e-09 Tgcggg gccggcgggcgggcaggaggcggcggcccg ggccTCGGGA chr4:82433833-82433933 - 46 4.19e-09 ATAAGAGGAA GGGAAAGGGGGAGGGGGAGGAGGGGGGGGC TTTCTGAGGA chr10:126251691-12625179 + 38 4.19e-09 ctgttggatg gggtggggcggggcaggagggcagtgggcg tggctataaa chr19:50879857-50879957 + 56 6.58e-09 gtgggggtgc agtaggaagggaggaggcggggcgggggcg gggcatgatg chr1:14138003-14138103 + 26 7.63e-09 gagacccaca aggtgggagggagctgtgggcagaggaggg cagggcaggg chr17:63557572-63557672 - 59 7.63e-09 GAGCCGGGGA GAGCGAGGGCAGGCAGGGGGAGGAGGCGGG AGCAAAGAGG chr19:39926361-39926461 + 36 8.84e-09 CGCTCAGAGC GGGCGGGCCCTGTGAGGCGGAAGTGGCGGG CTCTGTGGGC chr1:205413759-205413859 - 8 1.02e-08 ATTACTGAGA CGCGGTGCTAAGGGAGCCGGGGAGGGGGCG GAGGGCT chr2:112811476-112811576 - 49 1.02e-08 GGGCCTGAGT GGGGAGGCGGGGCCTGAGTGGGGAGGCGGG GCCTGTCTGG chr9:140499521-140499621 + 5 1.57e-08 gggg cggggcgaggAGGCTGTCAGAGGGGCGGGG AATAACGAGG chr1:17447754-17447854 + 66 2.40e-08 TTGCAGGGCC ACTGGGGTGGAGGCAGGGGGcaaggccgag tgagg chr22:30162693-30162793 + 47 2.40e-08 ACTGGGCGGA GGGCGGGGAGAAGGTGATGGCGCGCGAGGG CTTCTGGGAG chr19:9929862-9929962 + 66 2.76e-08 GGAAGGCGGG GCTGGGGCGGGGCGAGACCTTGGGGGCGGG GTTGA chr15:51973476-51973576 - 6 3.16e-08 AGAGCCAGGA GGGTGGGTGTGGGGCGGGAGAGGGGCCGGG ACTGG chr14:34234216-34234316 + 58 4.74e-08 TCAGGAGCTC AGCCAGGGGCCGGCTGGGCTAGGGGGAGGG GATTGGCAGA chr11:122932773-12293287 + 2 5.41e-08 G GGTGGGGCGCAGCGAGTCCGCGCGCGGGAG TCCTCAGTTA chr11:118779557-11877965 + 46 7.04e-08 CAGGCCAGGC CGGCAGGCAGAAGCAGGAGGAAAGGGGGAG GGGAGCGGTG chr9:37465171-37465271 + 8 7.04e-08 TGGGAAG GGCGGGGCCGGGGTAGGAGTGCAGCCAGCC GGCGCGCGGA chr2:19550159-19550259 - 45 8.02e-08 TGTCAGGAAT GGTGGGGGCGGGCGCCCTGGGAGGCCCGGG ACGCTTAGGA chr2:216974100-216974200 - 21 1.72e-07 ATGGGATAAA GAGAGAGAGAGGGGAGGCGGGTGGGGAGGC AGGTGAGACA chr19:10982812-10982912 + 29 1.94e-07 TGGGGAGAGG GCCCATGCGGGGACGGTGGGAGCCGCAGGG TGAGCTCCTC chr1:154297465-154297565 + 49 2.19e-07 AATGAGCCAG GGCGAGGAGGGAGGGTGAAGGAACGGAGGG CGGGCGGCTC chr19:1122878-1122978 + 13 2.19e-07 GGTCAGGGCT GGCCGGGTCGGGGGTGTGGCCGCGGCCTGC TGGGTTGGTT chr17:54671178-54671278 + 26 2.80e-07 TCCTCCGGGG ACGCGGGACGAAGCAGCAGCCCCGGGCGCG CGCCAGAGGC chr19:13858244-13858344 - 57 3.15e-07 AGGACGCCGG CGTGAGGCGGGGCGAGGCAGCAGCTCCACG CTGATTGGCT chr19:15562954-15563054 + 3 3.55e-07 CA CCTGGGGGCGGGGCTTGCCAAGAGGCAGGG CCTGGACAGA chr16:22018651-22018751 + 34 4.00e-07 AGGTGACAGG GACCGCGCGGGGCCCGGAGTCGCTCGGCGG GAGTCGGGGC chr1:9711720-9711820 - 71 4.00e-07 . GGCAAGGCGCGCAGTGCAGGCGCCGGGGAG CTGCGCACGC chr2:219850037-219850137 - 12 5.05e-07 GGAGACGGGA ACCCGGGTGGGGATAGAGGGAGGGAGGGGG AGGAGAGTGA chr20:62184443-62184543 + 46 6.36e-07 TGGTGGGAGG GGCCGTAGTAGGGGAGCCCGCGGTGGGAGG AGCCTGCTCT chr15:40646787-40646887 - 37 6.36e-07 GCTTGGTACC AGTGGGGAAGAGGCAGGCTCCAGGGCTGGG CGCTTTCCTG chr6:109169125-109169225 - 31 6.36e-07 TAGGCCGGGA GGTCAGATCAGAGCAGGCGTCGTGGGCGGG TGTCCGCTTT chr17:40575135-40575235 + 2 7.12e-07 T CCGCTGGCGGCGGGAGCGGGACGGGCGGAG GAATGCGAGC chr7:151001771-151001871 - 59 7.12e-07 GAATTCAGTG GCGGATGAGGAGGTAGGAGGGGTGGGGTGG GTGTGAGGAG chr16:29822455-29822555 - 40 8.92e-07 ATGGCCTCAG GGCCGTGACGCGCGTGGGGAGGGATGCGGC TGGGGGCTGA chr12:55391640-55391740 - 41 9.98e-07 TAGAGGATGG AGCTGGGGGGAGGGTGATGTCTATGGAGGG CGAGGATTCC chr12:119591126-11959122 - 49 9.98e-07 GAGGAAGAAG GCCCGAGAACGGGGAGGCGGGGCCAGAGAG GAGGATCAGA chr2:233896450-233896550 + 45 9.98e-07 CGCTGCCTCA GGGGGAGCCCACGCAGCAGCGGGGGCAGAC GGGCCTCAGC chr5:175223726-175223826 - 11 1.11e-06 GGTCCTTAGC AGCCGCGCGGAACCAGGGCGGAGGGTGCGG AGGAGCCCGC chr1:153606228-153606328 + 39 1.11e-06 AGGCAGGAAA GGGCAGGCCGGGTGAGCAGACGGATCGGCC GACTAGACAG chr9:33076342-33076442 + 66 1.11e-06 GTGAACGAAG AGTAGGGGCGAGGTTCGCGTAGGGGCGGAG CCCTC chr7:99647005-99647105 + 30 1.24e-06 CTACTTTTCC GCGGGGGCGGGGCTATGACGCACTTCCGGG TGCGCGGTCC chr4:41218489-41218589 - 13 1.24e-06 ATGTGTTGGG AGGCGGACGAAGGAAGGAAGCAAGGGAAGG GTCAAAGCCT chr3:32279546-32279646 + 35 1.24e-06 GGCCTGGGCC AGGCGGGGCCTGACAGAAGTAAAGGCCGGG AGGGGGAGCG chrX:153606807-153606907 - 51 1.24e-06 GCATGGATTG GCTAGCGGCGTAGGGGGCGGGGCCCGCGCG GGAGTCAGGG chr15:42500160-42500260 - 21 1.24e-06 CGGGAGGAAG GGGCGGGACTTCGGCTGCGGAAGAGGCGGG CCTAACTAGC chr17:4900521-4900621 + 8 1.39e-06 GAGGAGC CGGCGGGCGGTGCTCGTCTGAGGGCGGGGC CTGAGCGGAG chr22:41908629-41908729 - 23 1.55e-06 CTGGTTTCAG AGCGGGGCGGTGCTGGGAGCCCATGCGGCG TCAGATTACA chr19:12904489-12904589 - 64 1.72e-06 GCCCAGC GCGAGGGCGGTGGCGGCGCCCAGCGGCCCG AGCAGCCGCC chr17:3657635-3657735 - 68 1.72e-06 CTG GGCGAGGGCGGGGCCGAGATGGGGACACCG AGGCTGCGCA chr10:129948544-12994864 + 11 1.72e-06 TCCCACTCGC AGCGGACACAGGCGAGGCGCAGCGGGACGG GATTGGTGGG chr16:88729194-88729294 - 51 1.92e-06 CCGCTGATTG GTCGGCGCGCGAGCAGCCGGGCTCGCACGG GCCAATCCTG chr6:41393921-41394021 + 26 2.13e-06 ctctaCCAGC GCCAGAGCTGGAGGAGGTCAGAGGAGAGGG GCCGTACTGG chr1:154539852-154539952 - 50 2.13e-06 ACAATTGGGA CGGTGAGGGGGAGGAGTCTGCGCCCCGGAG GCGGAAACGC chr20:44650721-44650821 + 31 2.37e-06 AAACTGAGTC AGGGTTGCCGAGGCAGGTGCCAGGTCAGCG GGTCCTCGGT chr6:15674788-15674888 - 44 2.37e-06 GAAACTGCAG ATGGGAGCGGGAGAGGGAGTCACCTCGGGG CTCTCTGCAG chr6:36816519-36816619 - 30 2.63e-06 AGATGCGAGC GAGCAGGCGAGCCCTGGGGGCAGGGCCACC GGGACTTAAG chr1:165567214-165567314 + 38 2.63e-06 TTGCCTGGGA GGGCGGGGTTAGGGTGCAGAAACAGGACGG AGAAGGGGGC chr4:83955986-83956086 + 38 2.91e-06 TCCACCGCTG AGCTGGGAGAAAGATGGCGGCAGCCGTGCG ACAGGATTTG chr1:161228089-161228189 + 45 2.91e-06 AGCTTCTATT GGTCGGGCTGGAGGCGGGTACCGAGCTGAG TATAAAAGGT chr11:129872239-12987233 + 41 3.23e-06 ACTTACACGA CGTTGGGTGAGGGGAGCTGGAAGATCAGCG GGTCCCCGAT chr17:33905307-33905407 - 52 3.58e-06 TCTTCTGTTT CAGCGGGGCGGGAGCGGAAGCTCAGGTGGG TCATAGAGTT chr12:8395292-8395392 + 34 3.58e-06 gggtcaggag gtgcgtcctgggggcggactctagggcggg gctaaggtga chr19:3115995-3116095 + 26 3.96e-06 gaggccagaa ggctgagatgcaggtgtgggccgggccagg tccttctgag chr13:50366768-50366868 - 36 4.38e-06 GCAACATGAG CGCGGCGCGCAAAGAGCCGCGCGCGGAAGG GTCCCGGCAT chr16:4816820-4816920 + 62 4.84e-06 TGGCTAAGCC GGCCGTTGGGGGCGTGGCAACACGGCCGAG TGGGCGGGT chr2:139456738-139456838 + 29 4.84e-06 ATCCGGCACA CGGGATGGTAGAGATGGCCTAGGGGCAGCG GTGAGACTCG chr7:44162849-44162949 - 39 5.35e-06 CAGTGGTCGG CGGGATGAGGCGCCTGGTGACGGACGGGGC GAGGAGGGCA chr19:14800726-14800826 - 45 5.35e-06 GAGAGCGAGA GACCGGGCGGCGGGCGCCCAGATGCGAGGC CCTGACTGTG chr19:36119299-36119399 + 12 5.35e-06 TTTAAACTTC CGGCGCGGGCTCTGCGGTGGCACAGGAGGG TCCTCCAAAC chr1:43814786-43814886 - 3 5.90e-06 TGCAGGAAGT GGCGAAGCCGTAGGTGCGCACGGGCGGTGG AC chr19:49956376-49956476 - 53 6.51e-06 GGCGGGAATC ACGGGGACTAAGAGAGGCGGAGCGGCTGAG CTACCGCAGT chr6:30848308-30848408 + 49 6.51e-06 TCCCTCTCTG CGGGGGCCTAGAGGCTCGGTGAGGGGAGCG GGACTTGGTT chr9:19102554-19102654 + 20 7.17e-06 AGAGCAGTGT GCGCCGGCGCCGCCAGGCGTCCGAGGGAGG AGGGACTTCC chr17:3910262-3910362 + 62 7.17e-06 ATGCCCTGGA GGCGAGGCCAGGCCCGTCAGGCCTTCAGGG TCTGGGCAG chr7:97739303-97739403 - 35 7.90e-06 GAGGCTCCTA GACGGGGCGGGCGTAGGGGGCAAAACGGCA TCCCAGCTCA chr3:47629769-47629869 - 67 7.90e-06 TGGG GGCGGGGGGGGGGCGGGAAGAAAAACAAGA CATAGAACTG chr15:68260344-68260444 + 12 9.56e-06 CGGTTGCCTA GGTGACGGGGAGCGAGAGGAAGAAGTGGGG GCTGAGCTGA chr6:28511447-28511547 + 48 9.56e-06 ACACCCTCCT GTGAGTGCCGGAGGCGTGGTGAAAGCAACG GGGTGCATTT chr3:52029845-52029945 + 63 9.56e-06 GCCCGGAAGA ACGCAAGCCAGACGTGGAGGCGGTGCTACG AGCTTGCC chr6:31628224-31628324 - 58 9.56e-06 ATCTCGGTTT GGCGGTCCGGCGCGCACAGACAGCGCGGGG TATACGGGGG chr6:42714051-42714151 - 36 1.05e-05 TAGGGGGGAG GGGGGCGGTAAGGATGAGGGCTACGGGGAG GCAGAAATGG chr1:16542420-16542520 + 2 1.05e-05 T GGCGGGGGCGGAGCTTAATGATGGGCGGGA ACAGGCGGAA chr8:23540171-23540271 + 5 1.05e-05 TGGC CGCGGGACGGGCCGCGCCGCGGATTGGCCG CCCTGAGCCC chr7:5601567-5601667 - 11 1.27e-05 AGGTCTGTGT GGCCGTGCGCGAGACTGCTCGTGGGCAGCG TGGGAATAGG chr19:11924604-11924704 + 43 1.39e-05 TTCTGCTGTC ACTCAGCACGGAGGAGGCGGGGCCTGGCGC CCCATCCAAT chr17:72149805-72149905 - 13 1.67e-05 CACCTTCCTG GTGAGTAGGTGGGCCGGCTGGGGGTGAGCG GTTCTGTGTC chr17:7197959-7198059 - 43 1.83e-05 TACGGGCAAG GTCGGTCTCGAGGGTGGAGGCGAGCGGTGC TACTCACTGC chr8:97247544-97247644 + 31 1.83e-05 AGCACCTCTC GGCCAGGGTGAGGCCAATGGAGTAGGCGGG GCATTTTGCG chr10:81107732-81107832 - 13 1.83e-05 GGCCCCCAAG GACAGTGGCAGGGGTTGAGGCGCCGGGCAC ACTGTCTCTG chr11:57267208-57267308 + 33 2.00e-05 CCCACCCGGC CGCCAGGGAGGGTCTGAGGTCAAGCGCCGG AGAGAAGGGA chr20:1098783-1098883 - 62 2.19e-05 GCGCAACTG CGTGAGGCGCGCCGGGTTGGCAACGCGAGC GCAGCACTGA chr17:8198661-8198761 + 2 2.19e-05 T GCTGGGACCGCCCCTCGGGTGGGCGGACGG CTTTAGCTTC chr1:228652022-228652122 - 36 2.85e-05 AGAAATTCCT CCCAGTGGCGGCCGCGGAGTCAGGCCGTCC AATCAGACAC chr16:11349826-11349926 - 15 3.11e-05 AAGAGAGGGA AACAGGGCCGAAGCGGTCCTCGCCGGACGC CACCGCGGAA chr4:120221558-120221658 - 34 3.11e-05 CAGCTATCTG CCTGGGACGCCGCGAGGCAGAAGTAGGCGG GCCCATTGAC chr7:157203962-157204062 + 61 4.37e-05 GCCCCGAGAA CGTGGTGTGCAGGTGCGGGCCGCCTGGGGG AGCCATGTTT chr5:153418182-153418282 + 40 5.16e-05 GGAGCTAGAC GGCGGTCGGGTAGGTGACGGCTTGGTTGGG GTCGCTGCGA chr5:157158232-157158332 + 63 5.61e-05 CGGAATTTCC ATCGGTGAGCGAGCTCGACTCGGGGCGTCG CGATGCGC chr9:131534075-131534175 - 27 6.08e-05 TCAGGTGAAC CGCAGCGCCAGGGCGGGCACCGATCCTAGG GTCCCACGAA chr14:94492248-94492348 - 37 6.60e-05 GCAATCAGAA GCCGGGACGCGGGACGTCATAGAAAGTGGG TGGGACTTCA chr12:51632222-51632322 + 6 7.75e-05 GCGCC ACTCGGGCGTCGGGTGACGCTAGGCGGACG GACCATCATG chr19:14183837-14183937 + 30 8.39e-05 ACCCTGGGCC GTCCGAAGCGCAAAGGGCGGAGGTCCAGGG GCAGCATCCC chr5:133450352-133450452 + 66 8.39e-05 TCAAGTCGTC GCTCGTGAACGAGTCCGAgggcgcggccgg cggcg chr9:130007382-130007482 - 32 9.08e-05 TTCTACATGC CGCTGGGTGAGATCAGCGGGTGAGGCCACG CAAGTCCAGA chr13:28366190-28366290 - 65 1.24e-04 AGCGCT AGTGGTGCTGAAAGGCGCCGGCGGCGCGGC TTAAATAGGA chr1:176176403-176176503 + 8 1.94e-04 AGAATAT CGGCGCAAGCGCGGAGTAGCCGTGTCACGC ATGCGTGCGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGSSGGGSSGGRGSHGGVGGVRGGGSVGGG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:10046762-10046862 3.4e-12 39_[-1]_31 chr13:21140843-21140943 1.5e-10 57_[-1]_13 chr5:55290787-55290887 1.8e-10 35_[-1]_35 chr19:46087480-46087580 8.5e-10 12_[-1]_58 chr3:197686814-197686914 1e-09 4_[+1]_66 chr1:202162569-202162669 1.6e-09 51_[-1]_19 chr11:118306613-11830671 1.9e-09 6_[+1]_64 chr4:82433833-82433933 4.2e-09 45_[-1]_25 chr10:126251691-12625179 4.2e-09 37_[+1]_33 chr19:50879857-50879957 6.6e-09 55_[+1]_15 chr1:14138003-14138103 7.6e-09 25_[+1]_45 chr17:63557572-63557672 7.6e-09 58_[-1]_12 chr19:39926361-39926461 8.8e-09 35_[+1]_35 chr1:205413759-205413859 1e-08 7_[-1]_63 chr2:112811476-112811576 1e-08 48_[-1]_22 chr9:140499521-140499621 1.6e-08 4_[+1]_66 chr1:17447754-17447854 2.4e-08 65_[+1]_5 chr22:30162693-30162793 2.4e-08 46_[+1]_24 chr19:9929862-9929962 2.8e-08 65_[+1]_5 chr15:51973476-51973576 3.2e-08 5_[-1]_65 chr14:34234216-34234316 4.7e-08 57_[+1]_13 chr11:122932773-12293287 5.4e-08 1_[+1]_69 chr11:118779557-11877965 7e-08 45_[+1]_25 chr9:37465171-37465271 7e-08 7_[+1]_63 chr2:19550159-19550259 8e-08 44_[-1]_26 chr2:216974100-216974200 1.7e-07 20_[-1]_50 chr19:10982812-10982912 1.9e-07 28_[+1]_42 chr1:154297465-154297565 2.2e-07 48_[+1]_22 chr19:1122878-1122978 2.2e-07 12_[+1]_58 chr17:54671178-54671278 2.8e-07 25_[+1]_45 chr19:13858244-13858344 3.2e-07 56_[-1]_14 chr19:15562954-15563054 3.6e-07 2_[+1]_68 chr16:22018651-22018751 4e-07 33_[+1]_37 chr1:9711720-9711820 4e-07 70_[-1] chr2:219850037-219850137 5e-07 11_[-1]_59 chr20:62184443-62184543 6.4e-07 45_[+1]_25 chr15:40646787-40646887 6.4e-07 36_[-1]_34 chr6:109169125-109169225 6.4e-07 30_[-1]_40 chr17:40575135-40575235 7.1e-07 1_[+1]_69 chr7:151001771-151001871 7.1e-07 58_[-1]_12 chr16:29822455-29822555 8.9e-07 39_[-1]_31 chr12:55391640-55391740 1e-06 40_[-1]_30 chr12:119591126-11959122 1e-06 48_[-1]_22 chr2:233896450-233896550 1e-06 44_[+1]_26 chr5:175223726-175223826 1.1e-06 10_[-1]_60 chr1:153606228-153606328 1.1e-06 38_[+1]_32 chr9:33076342-33076442 1.1e-06 65_[+1]_5 chr7:99647005-99647105 1.2e-06 29_[+1]_41 chr4:41218489-41218589 1.2e-06 12_[-1]_58 chr3:32279546-32279646 1.2e-06 34_[+1]_36 chrX:153606807-153606907 1.2e-06 50_[-1]_20 chr15:42500160-42500260 1.2e-06 20_[-1]_50 chr17:4900521-4900621 1.4e-06 7_[+1]_63 chr22:41908629-41908729 1.5e-06 22_[-1]_48 chr19:12904489-12904589 1.7e-06 63_[-1]_7 chr17:3657635-3657735 1.7e-06 67_[-1]_3 chr10:129948544-12994864 1.7e-06 10_[+1]_60 chr16:88729194-88729294 1.9e-06 50_[-1]_20 chr6:41393921-41394021 2.1e-06 25_[+1]_45 chr1:154539852-154539952 2.1e-06 49_[-1]_21 chr20:44650721-44650821 2.4e-06 30_[+1]_40 chr6:15674788-15674888 2.4e-06 43_[-1]_27 chr6:36816519-36816619 2.6e-06 29_[-1]_41 chr1:165567214-165567314 2.6e-06 37_[+1]_33 chr4:83955986-83956086 2.9e-06 37_[+1]_33 chr1:161228089-161228189 2.9e-06 44_[+1]_26 chr11:129872239-12987233 3.2e-06 40_[+1]_30 chr17:33905307-33905407 3.6e-06 51_[-1]_19 chr12:8395292-8395392 3.6e-06 33_[+1]_37 chr19:3115995-3116095 4e-06 25_[+1]_45 chr13:50366768-50366868 4.4e-06 35_[-1]_35 chr16:4816820-4816920 4.8e-06 61_[+1]_9 chr2:139456738-139456838 4.8e-06 28_[+1]_42 chr7:44162849-44162949 5.3e-06 38_[-1]_32 chr19:14800726-14800826 5.3e-06 44_[-1]_26 chr19:36119299-36119399 5.3e-06 11_[+1]_59 chr1:43814786-43814886 5.9e-06 2_[-1]_68 chr19:49956376-49956476 6.5e-06 52_[-1]_18 chr6:30848308-30848408 6.5e-06 48_[+1]_22 chr9:19102554-19102654 7.2e-06 19_[+1]_51 chr17:3910262-3910362 7.2e-06 61_[+1]_9 chr7:97739303-97739403 7.9e-06 34_[-1]_36 chr3:47629769-47629869 7.9e-06 66_[-1]_4 chr15:68260344-68260444 9.6e-06 11_[+1]_59 chr6:28511447-28511547 9.6e-06 47_[+1]_23 chr3:52029845-52029945 9.6e-06 62_[+1]_8 chr6:31628224-31628324 9.6e-06 57_[-1]_13 chr6:42714051-42714151 1.1e-05 35_[-1]_35 chr1:16542420-16542520 1.1e-05 1_[+1]_69 chr8:23540171-23540271 1.1e-05 4_[+1]_66 chr7:5601567-5601667 1.3e-05 10_[-1]_60 chr19:11924604-11924704 1.4e-05 42_[+1]_28 chr17:72149805-72149905 1.7e-05 12_[-1]_58 chr17:7197959-7198059 1.8e-05 42_[-1]_28 chr8:97247544-97247644 1.8e-05 30_[+1]_40 chr10:81107732-81107832 1.8e-05 12_[-1]_58 chr11:57267208-57267308 2e-05 32_[+1]_38 chr20:1098783-1098883 2.2e-05 61_[-1]_9 chr17:8198661-8198761 2.2e-05 1_[+1]_69 chr1:228652022-228652122 2.8e-05 35_[-1]_35 chr16:11349826-11349926 3.1e-05 14_[-1]_56 chr4:120221558-120221658 3.1e-05 33_[-1]_37 chr7:157203962-157204062 4.4e-05 60_[+1]_10 chr5:153418182-153418282 5.2e-05 39_[+1]_31 chr5:157158232-157158332 5.6e-05 62_[+1]_8 chr9:131534075-131534175 6.1e-05 26_[-1]_44 chr14:94492248-94492348 6.6e-05 36_[-1]_34 chr12:51632222-51632322 7.8e-05 5_[+1]_65 chr19:14183837-14183937 8.4e-05 29_[+1]_41 chr5:133450352-133450452 8.4e-05 65_[+1]_5 chr9:130007382-130007482 9.1e-05 31_[-1]_39 chr13:28366190-28366290 0.00012 64_[-1]_6 chr1:176176403-176176503 0.00019 7_[+1]_63 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGSSGGGSSGGRGSHGGVGGVRGGGSVGGG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGSSGGGSSGGRGSHGGVGGVRGGGSVGGG width=30 seqs=113 chr19:10046762-10046862 ( 40) CGGCGAGGCGGGGGAGGCGGCGGCGCAGGG 1 chr13:21140843-21140943 ( 58) GCGGGGGCGGGCGGGGCCGGAAGCGCGGGG 1 chr5:55290787-55290887 ( 36) GGGAGGGCGGGGGCAGCGGGCGGCGGGCAG 1 chr19:46087480-46087580 ( 13) GTGAGGGCGGGGCGGGGCGTAAGGGGCGGG 1 chr3:197686814-197686914 ( 5) GCCCGGGCCGGAGCCGGTGGCGCTGGAGCG 1 chr1:202162569-202162669 ( 52) GGCGGCGGCGGCGGCGGTGGGAGCGCCGGG 1 chr11:118306613-11830671 ( 7) GCCGGCGGGCGGGCAGGAGGCGGCGGCCCG 1 chr4:82433833-82433933 ( 46) GGGAAAGGGGGAGGGGGAGGAGGGGGGGGC 1 chr10:126251691-12625179 ( 38) GGGTGGGGCGGGGCAGGAGGGCAGTGGGCG 1 chr19:50879857-50879957 ( 56) AGTAGGAAGGGAGGAGGCGGGGCGGGGGCG 1 chr1:14138003-14138103 ( 26) AGGTGGGAGGGAGCTGTGGGCAGAGGAGGG 1 chr17:63557572-63557672 ( 59) GAGCGAGGGCAGGCAGGGGGAGGAGGCGGG 1 chr19:39926361-39926461 ( 36) GGGCGGGCCCTGTGAGGCGGAAGTGGCGGG 1 chr1:205413759-205413859 ( 8) CGCGGTGCTAAGGGAGCCGGGGAGGGGGCG 1 chr2:112811476-112811576 ( 49) GGGGAGGCGGGGCCTGAGTGGGGAGGCGGG 1 chr9:140499521-140499621 ( 5) CGGGGCGAGGAGGCTGTCAGAGGGGCGGGG 1 chr1:17447754-17447854 ( 66) ACTGGGGTGGAGGCAGGGGGCAAGGCCGAG 1 chr22:30162693-30162793 ( 47) GGGCGGGGAGAAGGTGATGGCGCGCGAGGG 1 chr19:9929862-9929962 ( 66) GCTGGGGCGGGGCGAGACCTTGGGGGCGGG 1 chr15:51973476-51973576 ( 6) GGGTGGGTGTGGGGCGGGAGAGGGGCCGGG 1 chr14:34234216-34234316 ( 58) AGCCAGGGGCCGGCTGGGCTAGGGGGAGGG 1 chr11:122932773-12293287 ( 2) GGTGGGGCGCAGCGAGTCCGCGCGCGGGAG 1 chr11:118779557-11877965 ( 46) CGGCAGGCAGAAGCAGGAGGAAAGGGGGAG 1 chr9:37465171-37465271 ( 8) GGCGGGGCCGGGGTAGGAGTGCAGCCAGCC 1 chr2:19550159-19550259 ( 45) GGTGGGGGCGGGCGCCCTGGGAGGCCCGGG 1 chr2:216974100-216974200 ( 21) GAGAGAGAGAGGGGAGGCGGGTGGGGAGGC 1 chr19:10982812-10982912 ( 29) GCCCATGCGGGGACGGTGGGAGCCGCAGGG 1 chr1:154297465-154297565 ( 49) GGCGAGGAGGGAGGGTGAAGGAACGGAGGG 1 chr19:1122878-1122978 ( 13) GGCCGGGTCGGGGGTGTGGCCGCGGCCTGC 1 chr17:54671178-54671278 ( 26) ACGCGGGACGAAGCAGCAGCCCCGGGCGCG 1 chr19:13858244-13858344 ( 57) CGTGAGGCGGGGCGAGGCAGCAGCTCCACG 1 chr19:15562954-15563054 ( 3) CCTGGGGGCGGGGCTTGCCAAGAGGCAGGG 1 chr16:22018651-22018751 ( 34) GACCGCGCGGGGCCCGGAGTCGCTCGGCGG 1 chr1:9711720-9711820 ( 71) GGCAAGGCGCGCAGTGCAGGCGCCGGGGAG 1 chr2:219850037-219850137 ( 12) ACCCGGGTGGGGATAGAGGGAGGGAGGGGG 1 chr20:62184443-62184543 ( 46) GGCCGTAGTAGGGGAGCCCGCGGTGGGAGG 1 chr15:40646787-40646887 ( 37) AGTGGGGAAGAGGCAGGCTCCAGGGCTGGG 1 chr6:109169125-109169225 ( 31) GGTCAGATCAGAGCAGGCGTCGTGGGCGGG 1 chr17:40575135-40575235 ( 2) CCGCTGGCGGCGGGAGCGGGACGGGCGGAG 1 chr7:151001771-151001871 ( 59) GCGGATGAGGAGGTAGGAGGGGTGGGGTGG 1 chr16:29822455-29822555 ( 40) GGCCGTGACGCGCGTGGGGAGGGATGCGGC 1 chr12:55391640-55391740 ( 41) AGCTGGGGGGAGGGTGATGTCTATGGAGGG 1 chr12:119591126-11959122 ( 49) GCCCGAGAACGGGGAGGCGGGGCCAGAGAG 1 chr2:233896450-233896550 ( 45) GGGGGAGCCCACGCAGCAGCGGGGGCAGAC 1 chr5:175223726-175223826 ( 11) AGCCGCGCGGAACCAGGGCGGAGGGTGCGG 1 chr1:153606228-153606328 ( 39) GGGCAGGCCGGGTGAGCAGACGGATCGGCC 1 chr9:33076342-33076442 ( 66) AGTAGGGGCGAGGTTCGCGTAGGGGCGGAG 1 chr7:99647005-99647105 ( 30) GCGGGGGCGGGGCTATGACGCACTTCCGGG 1 chr4:41218489-41218589 ( 13) AGGCGGACGAAGGAAGGAAGCAAGGGAAGG 1 chr3:32279546-32279646 ( 35) AGGCGGGGCCTGACAGAAGTAAAGGCCGGG 1 chrX:153606807-153606907 ( 51) GCTAGCGGCGTAGGGGGCGGGGCCCGCGCG 1 chr15:42500160-42500260 ( 21) GGGCGGGACTTCGGCTGCGGAAGAGGCGGG 1 chr17:4900521-4900621 ( 8) CGGCGGGCGGTGCTCGTCTGAGGGCGGGGC 1 chr22:41908629-41908729 ( 23) AGCGGGGCGGTGCTGGGAGCCCATGCGGCG 1 chr19:12904489-12904589 ( 64) GCGAGGGCGGTGGCGGCGCCCAGCGGCCCG 1 chr17:3657635-3657735 ( 68) GGCGAGGGCGGGGCCGAGATGGGGACACCG 1 chr10:129948544-12994864 ( 11) AGCGGACACAGGCGAGGCGCAGCGGGACGG 1 chr16:88729194-88729294 ( 51) GTCGGCGCGCGAGCAGCCGGGCTCGCACGG 1 chr6:41393921-41394021 ( 26) GCCAGAGCTGGAGGAGGTCAGAGGAGAGGG 1 chr1:154539852-154539952 ( 50) CGGTGAGGGGGAGGAGTCTGCGCCCCGGAG 1 chr20:44650721-44650821 ( 31) AGGGTTGCCGAGGCAGGTGCCAGGTCAGCG 1 chr6:15674788-15674888 ( 44) ATGGGAGCGGGAGAGGGAGTCACCTCGGGG 1 chr6:36816519-36816619 ( 30) GAGCAGGCGAGCCCTGGGGGCAGGGCCACC 1 chr1:165567214-165567314 ( 38) GGGCGGGGTTAGGGTGCAGAAACAGGACGG 1 chr4:83955986-83956086 ( 38) AGCTGGGAGAAAGATGGCGGCAGCCGTGCG 1 chr1:161228089-161228189 ( 45) GGTCGGGCTGGAGGCGGGTACCGAGCTGAG 1 chr11:129872239-12987233 ( 41) CGTTGGGTGAGGGGAGCTGGAAGATCAGCG 1 chr17:33905307-33905407 ( 52) CAGCGGGGCGGGAGCGGAAGCTCAGGTGGG 1 chr12:8395292-8395392 ( 34) GTGCGTCCTGGGGGCGGACTCTAGGGCGGG 1 chr19:3115995-3116095 ( 26) GGCTGAGATGCAGGTGTGGGCCGGGCCAGG 1 chr13:50366768-50366868 ( 36) CGCGGCGCGCAAAGAGCCGCGCGCGGAAGG 1 chr16:4816820-4816920 ( 62) GGCCGTTGGGGGCGTGGCAACACGGCCGAG 1 chr2:139456738-139456838 ( 29) CGGGATGGTAGAGATGGCCTAGGGGCAGCG 1 chr7:44162849-44162949 ( 39) CGGGATGAGGCGCCTGGTGACGGACGGGGC 1 chr19:14800726-14800826 ( 45) GACCGGGCGGCGGGCGCCCAGATGCGAGGC 1 chr19:36119299-36119399 ( 12) CGGCGCGGGCTCTGCGGTGGCACAGGAGGG 1 chr1:43814786-43814886 ( 3) GGCGAAGCCGTAGGTGCGCACGGGCGGTGG 1 chr19:49956376-49956476 ( 53) ACGGGGACTAAGAGAGGCGGAGCGGCTGAG 1 chr6:30848308-30848408 ( 49) CGGGGGCCTAGAGGCTCGGTGAGGGGAGCG 1 chr9:19102554-19102654 ( 20) GCGCCGGCGCCGCCAGGCGTCCGAGGGAGG 1 chr17:3910262-3910362 ( 62) GGCGAGGCCAGGCCCGTCAGGCCTTCAGGG 1 chr7:97739303-97739403 ( 35) GACGGGGCGGGCGTAGGGGGCAAAACGGCA 1 chr3:47629769-47629869 ( 67) GGCGGGGGGGGGGCGGGAAGAAAAACAAGA 1 chr15:68260344-68260444 ( 12) GGTGACGGGGAGCGAGAGGAAGAAGTGGGG 1 chr6:28511447-28511547 ( 48) GTGAGTGCCGGAGGCGTGGTGAAAGCAACG 1 chr3:52029845-52029945 ( 63) ACGCAAGCCAGACGTGGAGGCGGTGCTACG 1 chr6:31628224-31628324 ( 58) GGCGGTCCGGCGCGCACAGACAGCGCGGGG 1 chr6:42714051-42714151 ( 36) GGGGGCGGTAAGGATGAGGGCTACGGGGAG 1 chr1:16542420-16542520 ( 2) GGCGGGGGCGGAGCTTAATGATGGGCGGGA 1 chr8:23540171-23540271 ( 5) CGCGGGACGGGCCGCGCCGCGGATTGGCCG 1 chr7:5601567-5601667 ( 11) GGCCGTGCGCGAGACTGCTCGTGGGCAGCG 1 chr19:11924604-11924704 ( 43) ACTCAGCACGGAGGAGGCGGGGCCTGGCGC 1 chr17:72149805-72149905 ( 13) GTGAGTAGGTGGGCCGGCTGGGGGTGAGCG 1 chr17:7197959-7198059 ( 43) GTCGGTCTCGAGGGTGGAGGCGAGCGGTGC 1 chr8:97247544-97247644 ( 31) GGCCAGGGTGAGGCCAATGGAGTAGGCGGG 1 chr10:81107732-81107832 ( 13) GACAGTGGCAGGGGTTGAGGCGCCGGGCAC 1 chr11:57267208-57267308 ( 33) CGCCAGGGAGGGTCTGAGGTCAAGCGCCGG 1 chr20:1098783-1098883 ( 62) CGTGAGGCGCGCCGGGTTGGCAACGCGAGC 1 chr17:8198661-8198761 ( 2) GCTGGGACCGCCCCTCGGGTGGGCGGACGG 1 chr1:228652022-228652122 ( 36) CCCAGTGGCGGCCGCGGAGTCAGGCCGTCC 1 chr16:11349826-11349926 ( 15) AACAGGGCCGAAGCGGTCCTCGCCGGACGC 1 chr4:120221558-120221658 ( 34) CCTGGGACGCCGCGAGGCAGAAGTAGGCGG 1 chr7:157203962-157204062 ( 61) CGTGGTGTGCAGGTGCGGGCCGCCTGGGGG 1 chr5:153418182-153418282 ( 40) GGCGGTCGGGTAGGTGACGGCTTGGTTGGG 1 chr5:157158232-157158332 ( 63) ATCGGTGAGCGAGCTCGACTCGGGGCGTCG 1 chr9:131534075-131534175 ( 27) CGCAGCGCCAGGGCGGGCACCGATCCTAGG 1 chr14:94492248-94492348 ( 37) GCCGGGACGCGGGACGTCATAGAAAGTGGG 1 chr12:51632222-51632322 ( 6) ACTCGGGCGTCGGGTGACGCTAGGCGGACG 1 chr19:14183837-14183937 ( 30) GTCCGAAGCGCAAAGGGCGGAGGTCCAGGG 1 chr5:133450352-133450452 ( 66) GCTCGTGAACGAGTCCGAGGGCGCGGCCGG 1 chr9:130007382-130007482 ( 32) CGCTGGGTGAGATCAGCGGGTGAGGCCACG 1 chr13:28366190-28366290 ( 65) AGTGGTGCTGAAAGGCGCCGGCGGCGCGGC 1 chr1:176176403-176176503 ( 8) CGGCGCAAGCGCGGAGTAGCCGTGTCACGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGSSGGGSSGGRGSHGGVGGVRGGGSVGGG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 42600 bayes= 10.5196 E= 6.8e-096 -29 -12 124 -1346 -171 -6 135 -171 -1346 79 70 -42 -88 60 79 -171 -35 -476 168 -387 -107 -106 124 -42 -129 -195 178 -487 -63 94 28 -171 -229 37 112 -118 -71 -37 135 -255 -12 -118 124 -155 21 -106 128 -1346 -171 -6 143 -255 -188 49 107 -155 58 -18 -76 -2 -387 -195 182 -188 -107 -37 124 -107 3 66 4 -129 -118 -76 149 -188 -129 -86 124 -42 -2 91 14 -329 33 -106 102 -188 -29 -12 107 -207 -63 -6 102 -118 -188 -51 141 -107 -1346 79 121 -329 25 10 56 -171 -107 -59 147 -229 -97 10 135 -1346 -329 -51 175 -1346 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGSSGGGSSGGRGSHGGVGGVRGGGSVGGG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 113 E= 6.8e-096 0.212389 0.221239 0.566372 0.000000 0.079646 0.230088 0.610619 0.079646 0.000000 0.415929 0.389381 0.194690 0.141593 0.362832 0.415929 0.079646 0.203540 0.008850 0.769912 0.017699 0.123894 0.115044 0.566372 0.194690 0.106195 0.061947 0.823009 0.008850 0.168142 0.460177 0.292035 0.079646 0.053097 0.309735 0.522124 0.115044 0.159292 0.185841 0.610619 0.044248 0.238938 0.106195 0.566372 0.088496 0.300885 0.115044 0.584071 0.000000 0.079646 0.230088 0.646018 0.044248 0.070796 0.336283 0.504425 0.088496 0.389381 0.212389 0.141593 0.256637 0.017699 0.061947 0.849558 0.070796 0.123894 0.185841 0.566372 0.123894 0.265487 0.380531 0.247788 0.106195 0.115044 0.141593 0.672566 0.070796 0.106195 0.132743 0.566372 0.194690 0.256637 0.451327 0.265487 0.026549 0.327434 0.115044 0.486726 0.070796 0.212389 0.221239 0.504425 0.061947 0.168142 0.230088 0.486726 0.115044 0.070796 0.168142 0.637168 0.123894 0.000000 0.415929 0.557522 0.026549 0.309735 0.256637 0.353982 0.079646 0.123894 0.159292 0.663717 0.053097 0.132743 0.256637 0.610619 0.000000 0.026549 0.168142 0.805310 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGSSGGGSSGGRGSHGGVGGVRGGGSVGGG MEME-1 regular expression -------------------------------------------------------------------------------- [GCA][GC][CG][GC][GA]GG[CG][GC]G[GA][GA][GC][GC][ATC]GG[CAG]GG[CGA][GA][GCA][GC]G[GC][GAC]G[GC]G -------------------------------------------------------------------------------- Time 333.51 secs. ******************************************************************************** ******************************************************************************** MOTIF WGGGGGCGGGGCCWS MEME-2 width = 15 sites = 54 llr = 592 E-value = 4.3e-021 ******************************************************************************** -------------------------------------------------------------------------------- Motif WGGGGGCGGGGCCWS MEME-2 Description -------------------------------------------------------------------------------- Simplified A 53:21::::211:3: pos.-specific C 1:1::17:::17714 probability G 168799:a978:116 matrix T 3111::3:1::136: bits 2.1 1.9 * 1.6 * * 1.4 ** ** Relative 1.2 ** ** * Entropy 1.0 * ******* (15.8 bits) 0.8 ************ * 0.6 ************ * 0.4 ************** 0.2 *************** 0.0 --------------- Multilevel AGGGGGCGGGGCCTG consensus TA A T A TAC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGGGGGCGGGGCCWS MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------- chr12:8395292-8395392 + 2 5.93e-10 g agggggcggggcctg gggggtaggg chr19:39926361-39926461 + 78 4.89e-09 CTGTGGGCGG AAGGGGCGGGGCCTG GGAGTGTC chr9:140499521-140499621 + 42 7.90e-09 GGGAATAACG AGGGGGCGGGGCCAC ACGGACGGAT chr17:4900521-4900621 - 73 1.86e-08 AGGCGCGTCC AGGGGGCGGAGCCTC CTGCCGAGGC chr19:11457003-11457103 + 11 2.50e-08 TTCACAACCC AGGGGGCGGAGCCAG GATGATGACC chr19:15562954-15563054 + 47 1.21e-07 GACAGACTTA TTGGGGCGGGGCCAG GGTGGGGCTT chr17:3657635-3657735 - 18 1.87e-07 GGTTTCCGGA TGGGGGCGGGACCTG GTCAGTCACA chr19:1122878-1122978 + 52 1.87e-07 CTGGGTTGGT TGGGGGCGTGGCCAG CGGCTTGCAG chr1:21636567-21636667 + 23 2.79e-07 tgtgacttag tagaggtggggcctg atgctgtgat chr5:33440634-33440734 + 71 4.65e-07 CGCCGCAAGT TGGGGGCGGGGTTAG GGCGCCTTTC chr1:177139575-177139675 - 27 4.65e-07 GCGGCTTGGC AGGGGGCGGGCTCTG AGCCTCACCG chr11:71524449-71524549 - 32 5.26e-07 GCCCTGGCTT TGGGGCTGGGGCCTC CGGGGAGGTT chr19:50879857-50879957 + 21 5.81e-07 atgggaggag atgtggcggggcctg gagcgaggtt chr19:18384928-18385028 + 52 5.81e-07 GGCAGCTCTT AGGGGGTGGGGATTC TAGAAGGCAC chr19:12791708-12791808 - 35 6.59e-07 AGCTTTCTGG AATGGGCGGAGCCTG GGGCAAGACA chr12:4243482-4243582 - 83 6.59e-07 TTG TGGGGGTGGAGACTG GGAAGAGAGA chr19:46002690-46002790 + 40 7.49e-07 GGCCAAAATA CAGGGGCGGAGCCTG AGGGATGCTT chr13:28366190-28366290 - 12 1.30e-06 CTACGCCAGG AGCGGCCGGGGCCTC TCAATAGGGT chr15:90233594-90233694 + 59 1.64e-06 TCCGCCCCAG AGGGGGCGGGCACAC TTTCTGTAGA chr6:31628224-31628324 + 22 1.82e-06 GCCGCAGCTC ATGGGGCGGACCCTG CGAATAGACC chr14:74416452-74416552 - 12 2.01e-06 CAAAGCTAGA AAGGGGTGGACCCTG GCCCCGCATA chr19:9929862-9929962 + 15 2.48e-06 AACCACGCCT TGGAGGCGTGGCTAG GGCGGGTAGA chr13:50366768-50366868 - 83 2.48e-06 TTG TGGGGGCGGAGCTTT GTGCCCAGCA chr17:43475901-43476001 - 52 2.48e-06 GGAGTGTGGG AGGTGGTGGGGACTC CTGGCTGCAG chr12:119591126-11959122 - 21 2.48e-06 GATCAGAGCA AAGGGGTGGGGCCTA GGACGGGCCT chr16:22018651-22018751 - 68 3.04e-06 GTCTTCCAGC AGGAGGCGGGCCCCG ACTCCCGCCG chr2:112811476-112811576 - 8 3.04e-06 AGGCGCAGTG GGGAGGCGGGGCTCG CCGCCAG chrX:10018337-10018437 + 36 3.33e-06 TTGAACAGGA AAGGGGCGGGGTGAG GGGAAACTTG chr19:44172418-44172518 - 32 4.48e-06 AGGGGAAAAC TAGGGGCGGGGAGAG CTAAAGGGCG chr1:218458144-218458244 - 45 4.48e-06 CCCAGAGTTC CGGGGCCGGAGCCTC AGAATGTGAC chr11:3400160-3400260 + 80 4.48e-06 CCGCGATCTT TTGGAGCGGGGCTTC CTGCCT chr19:8657238-8657338 + 8 4.48e-06 AGCAAAC AGTAGGCGTGGCCAG AGCCGTGGGA chr2:216974100-216974200 - 69 4.96e-06 GAAGTAATAG AGGAAGTGGGGCTAG GGAGTGGAAT chr19:51161455-51161555 + 71 5.41e-06 GAGCACATAG TAGGTGTGGGGCCAG GGGTGATAGG chr3:194981191-194981291 - 5 5.91e-06 CCCACAGCGA AGGTGGCAGGGCCTG TCGT chr14:106877040-10687714 - 80 6.47e-06 GTGCAG GGTGAGCGGGGCTTG CTCATCTTCT chr1:234508838-234508938 - 7 6.47e-06 ACTTTCCATA GAGGGGCGGGACTTC CTGTTT chr19:42961287-42961387 + 42 7.11e-06 GAATACGCAC AGTGGGTGTGGCTTC TGTCACAATT chrX:153606807-153606907 - 1 7.11e-06 TCGCTGTGGG AGCAGGCGGGGCTGC chr7:98297310-98297410 + 71 8.50e-06 gaggagccct gggaggcgtggtctc tccagggtcc chr6:166814614-166814714 - 46 9.25e-06 TAAATGAGTG AATAGGTGGGGACTG GGCTGGAATT chr2:233896450-233896550 - 20 1.01e-05 TGAGGCAGCG AGGGGGCGGCGCTGC AGTGGGAAAG chr20:1098783-1098883 - 20 1.10e-05 CGCCAGGGAG TGCGAGCGGGGCGTG GCCCCTCAAA chr6:39082375-39082475 + 84 1.20e-05 GACTGGCAGC AGGGGGTTGGGCCGC CA chr19:10046762-10046862 - 13 1.31e-05 GCCCCGGCCG GGCGGGCGGGGTCGC GCCTGGTGGC chr8:20315649-20315749 - 34 1.42e-05 CCTAAATAGA GTGGGGTGGAGCCCG CCTGGGTTTG chr17:11234065-11234165 + 57 1.66e-05 CCACGGGATG TGGAGGCGTGGCTTT CCTGTCCCAG chr9:130007382-130007482 + 71 1.81e-05 GGCATGTAGA AATGGGTGGAGTCAG GCCTTGCTCT chr16:4816820-4816920 + 2 1.96e-05 G TGCGGGTGGGCCCGC AGGCGGCATT chr3:151152777-151152877 - 60 1.96e-05 TGTCTTTAAG GGGAGCTGGGGTCTC GCTCCATCTT chr12:57876925-57877025 - 72 3.11e-05 AGTGTGGAGT TTGTGGTGGAGACTG TGAAAAGTGT chr17:62776375-62776475 + 16 3.34e-05 GCAGAAAGCC GGGGTCCGGAGCCAG GAAGGCTGCG chr19:12904489-12904589 + 18 4.46e-05 GGTGCCAGGC CAGGAGCGGGGCGAC TGCCAGGTCT chr12:121494923-12149502 + 64 4.46e-05 CACATCCCCG TAGAGGCGGGAATAG GAACTTCACG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGGGGGCGGGGCCWS MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:8395292-8395392 5.9e-10 1_[+2]_84 chr19:39926361-39926461 4.9e-09 77_[+2]_8 chr9:140499521-140499621 7.9e-09 41_[+2]_44 chr17:4900521-4900621 1.9e-08 72_[-2]_13 chr19:11457003-11457103 2.5e-08 10_[+2]_75 chr19:15562954-15563054 1.2e-07 46_[+2]_39 chr17:3657635-3657735 1.9e-07 17_[-2]_68 chr19:1122878-1122978 1.9e-07 51_[+2]_34 chr1:21636567-21636667 2.8e-07 22_[+2]_63 chr5:33440634-33440734 4.7e-07 70_[+2]_15 chr1:177139575-177139675 4.7e-07 26_[-2]_59 chr11:71524449-71524549 5.3e-07 31_[-2]_54 chr19:50879857-50879957 5.8e-07 20_[+2]_65 chr19:18384928-18385028 5.8e-07 51_[+2]_34 chr19:12791708-12791808 6.6e-07 34_[-2]_51 chr12:4243482-4243582 6.6e-07 82_[-2]_3 chr19:46002690-46002790 7.5e-07 39_[+2]_46 chr13:28366190-28366290 1.3e-06 11_[-2]_74 chr15:90233594-90233694 1.6e-06 58_[+2]_27 chr6:31628224-31628324 1.8e-06 21_[+2]_64 chr14:74416452-74416552 2e-06 11_[-2]_74 chr19:9929862-9929962 2.5e-06 14_[+2]_71 chr13:50366768-50366868 2.5e-06 82_[-2]_3 chr17:43475901-43476001 2.5e-06 51_[-2]_34 chr12:119591126-11959122 2.5e-06 20_[-2]_65 chr16:22018651-22018751 3e-06 67_[-2]_18 chr2:112811476-112811576 3e-06 7_[-2]_78 chrX:10018337-10018437 3.3e-06 35_[+2]_50 chr19:44172418-44172518 4.5e-06 31_[-2]_54 chr1:218458144-218458244 4.5e-06 44_[-2]_41 chr11:3400160-3400260 4.5e-06 79_[+2]_6 chr19:8657238-8657338 4.5e-06 7_[+2]_78 chr2:216974100-216974200 5e-06 68_[-2]_17 chr19:51161455-51161555 5.4e-06 70_[+2]_15 chr3:194981191-194981291 5.9e-06 4_[-2]_81 chr14:106877040-10687714 6.5e-06 79_[-2]_6 chr1:234508838-234508938 6.5e-06 6_[-2]_79 chr19:42961287-42961387 7.1e-06 41_[+2]_44 chrX:153606807-153606907 7.1e-06 [-2]_85 chr7:98297310-98297410 8.5e-06 70_[+2]_15 chr6:166814614-166814714 9.3e-06 45_[-2]_40 chr2:233896450-233896550 1e-05 19_[-2]_66 chr20:1098783-1098883 1.1e-05 19_[-2]_66 chr6:39082375-39082475 1.2e-05 83_[+2]_2 chr19:10046762-10046862 1.3e-05 12_[-2]_73 chr8:20315649-20315749 1.4e-05 33_[-2]_52 chr17:11234065-11234165 1.7e-05 56_[+2]_29 chr9:130007382-130007482 1.8e-05 70_[+2]_15 chr16:4816820-4816920 2e-05 1_[+2]_84 chr3:151152777-151152877 2e-05 59_[-2]_26 chr12:57876925-57877025 3.1e-05 71_[-2]_14 chr17:62776375-62776475 3.3e-05 15_[+2]_70 chr19:12904489-12904589 4.5e-05 17_[+2]_68 chr12:121494923-12149502 4.5e-05 63_[+2]_22 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGGGGGCGGGGCCWS MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WGGGGGCGGGGCCWS width=15 seqs=54 chr12:8395292-8395392 ( 2) AGGGGGCGGGGCCTG 1 chr19:39926361-39926461 ( 78) AAGGGGCGGGGCCTG 1 chr9:140499521-140499621 ( 42) AGGGGGCGGGGCCAC 1 chr17:4900521-4900621 ( 73) AGGGGGCGGAGCCTC 1 chr19:11457003-11457103 ( 11) AGGGGGCGGAGCCAG 1 chr19:15562954-15563054 ( 47) TTGGGGCGGGGCCAG 1 chr17:3657635-3657735 ( 18) TGGGGGCGGGACCTG 1 chr19:1122878-1122978 ( 52) TGGGGGCGTGGCCAG 1 chr1:21636567-21636667 ( 23) TAGAGGTGGGGCCTG 1 chr5:33440634-33440734 ( 71) TGGGGGCGGGGTTAG 1 chr1:177139575-177139675 ( 27) AGGGGGCGGGCTCTG 1 chr11:71524449-71524549 ( 32) TGGGGCTGGGGCCTC 1 chr19:50879857-50879957 ( 21) ATGTGGCGGGGCCTG 1 chr19:18384928-18385028 ( 52) AGGGGGTGGGGATTC 1 chr19:12791708-12791808 ( 35) AATGGGCGGAGCCTG 1 chr12:4243482-4243582 ( 83) TGGGGGTGGAGACTG 1 chr19:46002690-46002790 ( 40) CAGGGGCGGAGCCTG 1 chr13:28366190-28366290 ( 12) AGCGGCCGGGGCCTC 1 chr15:90233594-90233694 ( 59) AGGGGGCGGGCACAC 1 chr6:31628224-31628324 ( 22) ATGGGGCGGACCCTG 1 chr14:74416452-74416552 ( 12) AAGGGGTGGACCCTG 1 chr19:9929862-9929962 ( 15) TGGAGGCGTGGCTAG 1 chr13:50366768-50366868 ( 83) TGGGGGCGGAGCTTT 1 chr17:43475901-43476001 ( 52) AGGTGGTGGGGACTC 1 chr12:119591126-11959122 ( 21) AAGGGGTGGGGCCTA 1 chr16:22018651-22018751 ( 68) AGGAGGCGGGCCCCG 1 chr2:112811476-112811576 ( 8) GGGAGGCGGGGCTCG 1 chrX:10018337-10018437 ( 36) AAGGGGCGGGGTGAG 1 chr19:44172418-44172518 ( 32) TAGGGGCGGGGAGAG 1 chr1:218458144-218458244 ( 45) CGGGGCCGGAGCCTC 1 chr11:3400160-3400260 ( 80) TTGGAGCGGGGCTTC 1 chr19:8657238-8657338 ( 8) AGTAGGCGTGGCCAG 1 chr2:216974100-216974200 ( 69) AGGAAGTGGGGCTAG 1 chr19:51161455-51161555 ( 71) TAGGTGTGGGGCCAG 1 chr3:194981191-194981291 ( 5) AGGTGGCAGGGCCTG 1 chr14:106877040-10687714 ( 80) GGTGAGCGGGGCTTG 1 chr1:234508838-234508938 ( 7) GAGGGGCGGGACTTC 1 chr19:42961287-42961387 ( 42) AGTGGGTGTGGCTTC 1 chrX:153606807-153606907 ( 1) AGCAGGCGGGGCTGC 1 chr7:98297310-98297410 ( 71) GGGAGGCGTGGTCTC 1 chr6:166814614-166814714 ( 46) AATAGGTGGGGACTG 1 chr2:233896450-233896550 ( 20) AGGGGGCGGCGCTGC 1 chr20:1098783-1098883 ( 20) TGCGAGCGGGGCGTG 1 chr6:39082375-39082475 ( 84) AGGGGGTTGGGCCGC 1 chr19:10046762-10046862 ( 13) GGCGGGCGGGGTCGC 1 chr8:20315649-20315749 ( 34) GTGGGGTGGAGCCCG 1 chr17:11234065-11234165 ( 57) TGGAGGCGTGGCTTT 1 chr9:130007382-130007482 ( 71) AATGGGTGGAGTCAG 1 chr16:4816820-4816920 ( 2) TGCGGGTGGGCCCGC 1 chr3:151152777-151152877 ( 60) GGGAGCTGGGGTCTC 1 chr12:57876925-57877025 ( 72) TTGTGGTGGAGACTG 1 chr17:62776375-62776475 ( 16) GGGGTCCGGAGCCAG 1 chr19:12904489-12904589 ( 18) CAGGAGCGGGGCGAC 1 chr12:121494923-12149502 ( 64) TAGAGGCGGGAATAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGGGGGCGGGGCCWS MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 51600 bayes= 11.0937 E= 4.3e-021 89 -211 -70 28 0 -1240 139 -123 -1240 -137 173 -123 -23 -1240 155 -181 -149 -1240 186 -281 -1240 -137 192 -1240 -1240 151 -1240 28 -381 -1240 200 -381 -1240 -1240 189 -123 -11 -369 162 -1240 -222 -111 179 -1240 -81 159 -1240 -100 -1240 147 -170 0 19 -211 -137 110 -381 55 130 -281 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGGGGGCGGGGCCWS MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 54 E= 4.3e-021 0.481481 0.055556 0.148148 0.314815 0.259259 0.000000 0.629630 0.111111 0.000000 0.092593 0.796296 0.111111 0.222222 0.000000 0.703704 0.074074 0.092593 0.000000 0.870370 0.037037 0.000000 0.092593 0.907407 0.000000 0.000000 0.685185 0.000000 0.314815 0.018519 0.000000 0.962963 0.018519 0.000000 0.000000 0.888889 0.111111 0.240741 0.018519 0.740741 0.000000 0.055556 0.111111 0.833333 0.000000 0.148148 0.722222 0.000000 0.129630 0.000000 0.666667 0.074074 0.259259 0.296296 0.055556 0.092593 0.555556 0.018519 0.351852 0.592593 0.037037 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGGGGGCGGGGCCWS MEME-2 regular expression -------------------------------------------------------------------------------- [AT][GA]G[GA]GG[CT]GG[GA]GC[CT][TA][GC] -------------------------------------------------------------------------------- Time 626.94 secs. ******************************************************************************** ******************************************************************************** MOTIF GGAAGVGGARG MEME-3 width = 11 sites = 85 llr = 762 E-value = 4.9e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGAAGVGGARG MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::76:42:832 pos.-specific C ::1:22::2:: probability G aa33836a:58 matrix T :::2::1::2: bits 2.1 ** * 1.9 ** * 1.6 ** * 1.4 ** * * Relative 1.2 ** * ** * Entropy 1.0 ** * ** * (12.9 bits) 0.8 *** * ** * 0.6 ***** *** * 0.4 *********** 0.2 *********** 0.0 ----------- Multilevel GGAAGAGGAGG consensus GGCGA A sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAAGVGGARG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------- chr7:151001771-151001871 + 29 2.10e-07 tactggctac ggaagaggagg acttaactcc chr4:26031599-26031699 + 54 8.24e-07 aaataccaag ggaagaggaag aagaatttga chr17:43128008-43128108 + 13 8.24e-07 CAGGGGAGAG GGAAGCGGAGG AGAGGGGTCT chr5:72334729-72334829 - 29 8.24e-07 TGAAGCTCCA GGAAGAGGAAG CTCTGAAAAG chr19:14183837-14183937 - 86 1.23e-06 ACCT GGAGGAGGAGG TCTTAGGGCC chr6:33084033-33084133 - 61 1.23e-06 GCTGGCGGCT GGAGGAGGAGG GGGAGACATT chr12:55413401-55413501 + 77 1.63e-06 GAGCTAACCA GGGAGAGGAGG TACTGAAGAG chr15:43213112-43213212 - 80 2.21e-06 CTGATGCTGA GGAAGAGGATG GATCCTTAAG chr6:30848308-30848408 - 4 2.21e-06 TGTGGAGAAA GGGAGGGGAGG CTG chr3:8194201-8194301 - 20 3.04e-06 GTTATGGATG GGATGAGGAGG AATGTGTGTG chr16:86108072-86108172 - 40 3.04e-06 GGAAATGAAG GGATGAGGAGG TCAAGTGACT chr11:47290529-47290629 + 41 3.04e-06 TTTCTGCGGT GGAGGAGGAAG TGTTGGATTT chr17:43098002-43098102 + 77 3.64e-06 CTAAGTGACT GGGAGCGGAGG GGAAGGTGGG chr12:52610652-52610752 - 7 3.64e-06 AAGGGAGGAG GGGAGAGGAAG AGAGCA chr19:38717176-38717276 + 14 4.44e-06 CCCCTCTCCT GGAACAGGAGG TAGGTCTCTG chr10:99160790-99160890 + 42 4.44e-06 TCCTGGCTTC GGATGGGGAGG AGCTCCAAGG chr10:12816095-12816195 + 8 4.44e-06 ggaagca ggaaggagagg aataggagag chr3:32279546-32279646 + 68 7.08e-06 GGCCGGGAGG GGGAGCGGAAG ACGGCCAGAA chr11:64163260-64163360 - 62 8.52e-06 ATCTCGCTGA GGAAGGAGAAG CTTAGAGGGC chr22:34225589-34225689 + 84 9.56e-06 AATGTCTGTG GGAAGATGAGG AATTCT chr12:55391640-55391740 - 9 1.18e-05 TTGGGAGTAA GGAAGAGGAAA GGGGCTTC chr12:56390666-56390766 - 58 1.18e-05 TAAGAAGCCT GGGAGAAGAGG CTGGCTCTTT chr1:176176403-176176503 + 62 1.18e-05 ACCACATTCC GGAACGGGAAG AAGGAGCTGT chr7:155387364-155387464 + 33 1.28e-05 CGCCCCCACC GGAGGGAGAGG GTGTTGTTTC chr1:211310531-211310631 + 38 1.28e-05 TCTGCGAGCT GGAAGGGGCAG GCCATGGATG chr12:14956166-14956266 - 15 1.50e-05 AGTATTGTAT GGAACCGGAAG AGACTCTGGT chr16:88729194-88729294 - 17 1.71e-05 TAGCGCGTGA GGAGGCAGAGG CCTCTGGGGT chr7:31602002-31602102 - 59 1.99e-05 TAAGACAGGA GGAACAGGATG AAGAAAGATA chr19:18384928-18385028 + 90 1.99e-05 CAGAGGTTGG GGAACAGGATG chr2:219850037-219850137 - 83 1.99e-05 GAGGGAG GGAAGCGGAAA TTTAAAAGTG chr19:11457003-11457103 - 36 1.99e-05 AATTATTTAG GGAGGGGGCGG GGTCATCATC chr5:141060375-141060475 + 65 1.99e-05 TGAAGAATAA GGATGGGGATG CCAGAGAGAT chr7:98476815-98476915 + 29 1.99e-05 GGGTCCCCTC GGATGGGGATG GGCAGGGAGA chr5:137800365-137800465 + 52 2.19e-05 TGCCATATAA GGAGCAGGAAG GATCCCCCGC chr12:109274342-10927444 - 73 2.51e-05 CTGAGGTTTA GGGAGGAGAAG TCACCCACCC chr17:76370494-76370594 + 63 2.87e-05 TCTCATCTCT GGAGGCAGAAG GTGGGCCGGA chr5:139496132-139496232 + 49 2.87e-05 ACCACCTGTA GGAGCGGGAAG GTATCAGTGC chr2:112811476-112811576 - 30 2.87e-05 GGGCCTGTCT GGGAGATGAGG CGCAGTGGGG chr11:19300789-19300889 + 25 2.87e-05 caggaagcaa gggagatgagg gaggtgccag chr1:59543778-59543878 - 38 3.14e-05 GGGGAGCCTA GGGAGAGGAAA TAATAAGGAT chr9:140499521-140499621 + 63 3.14e-05 CCACACGGAC GGATGGGGCGG GGAATAGGGG chr17:77720657-77720757 + 15 3.52e-05 GTCCCGGGTC GGAACAGGAGA ACCTGTAGGT chr19:55592120-55592220 - 78 3.52e-05 AGGGGTCCAG GGAGGGGGAAA TCCAGGGCGC chr11:122932773-12293287 + 47 3.52e-05 AGTTACCCCG GGCGGGGGAGG GGAGCGTCCA chr12:123458870-12345897 + 88 3.90e-05 CTGTGGCGGA GGGACCGGAAG CG chr12:51632222-51632322 + 69 3.90e-05 GCTCCGAACA GGAAGAGGACG AAAAAAATAA chr17:40481294-40481394 + 76 3.90e-05 CCAAGTAGCC GGAGGATGAAG TTAGGTTAAA chr12:46119477-46119577 + 86 3.90e-05 GGAGTAGCGC GGCAGAGGATG GAGA chr22:41128916-41129016 - 73 3.90e-05 TGGCTGCTCC GGAGGCTGAGG CGGTAGGATC chr8:72520598-72520698 + 73 3.90e-05 agtaagctat ggaagcagcgg gattagttat chr2:80297546-80297646 - 57 4.40e-05 ACCAGCAGCT GGAAGAAGAAA GGAGATGAGA chr1:204620827-204620927 + 61 4.40e-05 TAGGAGGCTG GGAAGCAGAGA AGACAAAGGT chr11:94701520-94701620 - 3 4.40e-05 AATTCAGATT GGAAGAAGAAA AG chr3:186131151-186131251 - 22 5.27e-05 CATTCCTCCT GGAGGAAGCGG ATTTTGAGTT chr3:52351393-52351493 + 60 5.27e-05 TAAGGGTTCA GGCTGGGGAGG TTCGCGGACG chr1:161228089-161228189 + 85 5.27e-05 TATAAAAGGT GGGGCCGGAGG CGGCG chr6:41393921-41394021 + 64 5.78e-05 GGGCCGTACT GGAGGGGGCTG GCTATCTTGG chr4:82433833-82433933 - 28 5.78e-05 GGCTTTCTGA GGAGGCTGAAG CTTTCCTTAC chr6:39082375-39082475 - 35 5.78e-05 GAGAGAAGGC GGAAGCAGCAG CGACTCTAAA chr17:2304679-2304779 + 85 5.78e-05 TCACATTCGC GGGTGCGGATG GGGCC chrX:1768326-1768426 - 71 5.78e-05 TGTGGACCCC GGGGGATGAGG CTTTTTTTCC chr15:51937529-51937629 - 80 5.78e-05 TGGCCAGAAA GGGGGATGAGG AACTTTTCTG chr1:24790050-24790150 - 12 6.39e-05 AAGGCTTGCA GGCTGCGGAGG AGGGCTCACC chr15:90233594-90233694 + 32 6.39e-05 TCCGCTGAGG GGGAGGGGCTG AGTCTCTCCG chr4:78076706-78076806 + 42 6.85e-05 TTCTAATTTA GGAGGGAGAGA GTAAACAAAT chr19:10046762-10046862 - 82 6.85e-05 GGGGGCGG GGGTGGGGCGG AATCCCGGCC chr7:92464540-92464640 - 27 6.85e-05 GAAAGCAGAA GGAGGCGGCTG CAGCCTTTGT chr8:23540171-23540271 - 88 6.85e-05 TA GGGAGGAGCGG AGCGGGGCAG chr17:21029930-21030030 + 39 7.55e-05 ACCAGGTAGG GGCTGGGGAAG AAGGAACCTC chr11:36722431-36722531 + 35 7.55e-05 TTGCCTCTAG GGATGAGGATA AAAGACATTT chr17:3910262-3910362 + 8 7.55e-05 AGTGCTG GGGACCAGAGG GAGTAGAGAA chr9:3696132-3696232 + 55 7.55e-05 AGCCCTTTCT GGGTCAGGAAG GGCATGTTGA chr20:31640630-31640730 + 52 7.55e-05 gctccttcag ggcaggggaga ttgtctcttt chr19:711197-711297 - 90 8.18e-05 . GGAGGAAGAAA CAGATACAAC chr1:156638737-156638837 - 65 8.88e-05 TCACTCAGAG GGAAGGAGATA GAGAGTCCTG chr20:12233291-12233391 + 3 8.88e-05 AT GGAAGACGAGG CTGGTTTGCA chr16:29822455-29822555 + 87 9.55e-05 CATGGTGGGT GGATGCGGCTG CGG chr5:133450352-133450452 - 26 9.55e-05 GGTCGCGCTC GGGACCGGCGG CGCTGTCGCG chr5:33440634-33440734 - 51 1.37e-04 AACTTGCGGC GGAACGAGCAG CCAATGGATA chr7:138794251-138794351 - 71 1.37e-04 CTCAAGTTCA GGGTGAGGATA ATAATATCTA chr2:150385115-150385215 - 51 1.45e-04 CTCATGCTTG GGAACCTGATG ACAATGGTCT chr6:127623586-127623686 - 89 1.55e-04 G CGAAGAGGAAG CAGTCATTGG chr16:22018651-22018751 + 3 1.75e-04 GC GGAACGGGCAA TGAGAATACA chr19:46002690-46002790 + 68 1.85e-04 GATGCTTTGA GGCACGGGAGA GTTAGTGGAA chr14:106877040-10687714 + 55 1.85e-04 GTGCTGGCGA GGAGGGAGACG ACTGAGAAGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAAGVGGARG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:151001771-151001871 2.1e-07 28_[+3]_61 chr4:26031599-26031699 8.2e-07 53_[+3]_36 chr17:43128008-43128108 8.2e-07 12_[+3]_77 chr5:72334729-72334829 8.2e-07 28_[-3]_61 chr19:14183837-14183937 1.2e-06 85_[-3]_4 chr6:33084033-33084133 1.2e-06 60_[-3]_29 chr12:55413401-55413501 1.6e-06 76_[+3]_13 chr15:43213112-43213212 2.2e-06 79_[-3]_10 chr6:30848308-30848408 2.2e-06 3_[-3]_86 chr3:8194201-8194301 3e-06 19_[-3]_70 chr16:86108072-86108172 3e-06 39_[-3]_50 chr11:47290529-47290629 3e-06 40_[+3]_49 chr17:43098002-43098102 3.6e-06 76_[+3]_13 chr12:52610652-52610752 3.6e-06 6_[-3]_83 chr19:38717176-38717276 4.4e-06 13_[+3]_76 chr10:99160790-99160890 4.4e-06 41_[+3]_48 chr10:12816095-12816195 4.4e-06 7_[+3]_82 chr3:32279546-32279646 7.1e-06 67_[+3]_22 chr11:64163260-64163360 8.5e-06 61_[-3]_28 chr22:34225589-34225689 9.6e-06 83_[+3]_6 chr12:55391640-55391740 1.2e-05 8_[-3]_81 chr12:56390666-56390766 1.2e-05 57_[-3]_32 chr1:176176403-176176503 1.2e-05 61_[+3]_28 chr7:155387364-155387464 1.3e-05 32_[+3]_57 chr1:211310531-211310631 1.3e-05 37_[+3]_52 chr12:14956166-14956266 1.5e-05 14_[-3]_75 chr16:88729194-88729294 1.7e-05 16_[-3]_73 chr7:31602002-31602102 2e-05 58_[-3]_31 chr19:18384928-18385028 2e-05 89_[+3] chr2:219850037-219850137 2e-05 82_[-3]_7 chr19:11457003-11457103 2e-05 35_[-3]_54 chr5:141060375-141060475 2e-05 64_[+3]_25 chr7:98476815-98476915 2e-05 28_[+3]_61 chr5:137800365-137800465 2.2e-05 51_[+3]_38 chr12:109274342-10927444 2.5e-05 72_[-3]_17 chr17:76370494-76370594 2.9e-05 62_[+3]_27 chr5:139496132-139496232 2.9e-05 48_[+3]_41 chr2:112811476-112811576 2.9e-05 29_[-3]_60 chr11:19300789-19300889 2.9e-05 24_[+3]_65 chr1:59543778-59543878 3.1e-05 37_[-3]_52 chr9:140499521-140499621 3.1e-05 62_[+3]_27 chr17:77720657-77720757 3.5e-05 14_[+3]_75 chr19:55592120-55592220 3.5e-05 77_[-3]_12 chr11:122932773-12293287 3.5e-05 46_[+3]_43 chr12:123458870-12345897 3.9e-05 87_[+3]_2 chr12:51632222-51632322 3.9e-05 68_[+3]_21 chr17:40481294-40481394 3.9e-05 75_[+3]_14 chr12:46119477-46119577 3.9e-05 85_[+3]_4 chr22:41128916-41129016 3.9e-05 72_[-3]_17 chr8:72520598-72520698 3.9e-05 72_[+3]_17 chr2:80297546-80297646 4.4e-05 56_[-3]_33 chr1:204620827-204620927 4.4e-05 60_[+3]_29 chr11:94701520-94701620 4.4e-05 2_[-3]_87 chr3:186131151-186131251 5.3e-05 21_[-3]_68 chr3:52351393-52351493 5.3e-05 59_[+3]_30 chr1:161228089-161228189 5.3e-05 84_[+3]_5 chr6:41393921-41394021 5.8e-05 63_[+3]_26 chr4:82433833-82433933 5.8e-05 27_[-3]_62 chr6:39082375-39082475 5.8e-05 34_[-3]_55 chr17:2304679-2304779 5.8e-05 84_[+3]_5 chrX:1768326-1768426 5.8e-05 70_[-3]_19 chr15:51937529-51937629 5.8e-05 79_[-3]_10 chr1:24790050-24790150 6.4e-05 11_[-3]_78 chr15:90233594-90233694 6.4e-05 31_[+3]_58 chr4:78076706-78076806 6.9e-05 41_[+3]_48 chr19:10046762-10046862 6.9e-05 81_[-3]_8 chr7:92464540-92464640 6.9e-05 26_[-3]_63 chr8:23540171-23540271 6.9e-05 87_[-3]_2 chr17:21029930-21030030 7.6e-05 38_[+3]_51 chr11:36722431-36722531 7.6e-05 34_[+3]_55 chr17:3910262-3910362 7.6e-05 7_[+3]_82 chr9:3696132-3696232 7.6e-05 54_[+3]_35 chr20:31640630-31640730 7.6e-05 51_[+3]_38 chr19:711197-711297 8.2e-05 89_[-3] chr1:156638737-156638837 8.9e-05 64_[-3]_25 chr20:12233291-12233391 8.9e-05 2_[+3]_87 chr16:29822455-29822555 9.6e-05 86_[+3]_3 chr5:133450352-133450452 9.6e-05 25_[-3]_64 chr5:33440634-33440734 0.00014 50_[-3]_39 chr7:138794251-138794351 0.00014 70_[-3]_19 chr2:150385115-150385215 0.00015 50_[-3]_39 chr6:127623586-127623686 0.00015 88_[-3]_1 chr16:22018651-22018751 0.00017 2_[+3]_87 chr19:46002690-46002790 0.00018 67_[+3]_22 chr14:106877040-10687714 0.00018 54_[+3]_35 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAAGVGGARG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGAAGVGGARG width=11 seqs=85 chr7:151001771-151001871 ( 29) GGAAGAGGAGG 1 chr4:26031599-26031699 ( 54) GGAAGAGGAAG 1 chr17:43128008-43128108 ( 13) GGAAGCGGAGG 1 chr5:72334729-72334829 ( 29) GGAAGAGGAAG 1 chr19:14183837-14183937 ( 86) GGAGGAGGAGG 1 chr6:33084033-33084133 ( 61) GGAGGAGGAGG 1 chr12:55413401-55413501 ( 77) GGGAGAGGAGG 1 chr15:43213112-43213212 ( 80) GGAAGAGGATG 1 chr6:30848308-30848408 ( 4) GGGAGGGGAGG 1 chr3:8194201-8194301 ( 20) GGATGAGGAGG 1 chr16:86108072-86108172 ( 40) GGATGAGGAGG 1 chr11:47290529-47290629 ( 41) GGAGGAGGAAG 1 chr17:43098002-43098102 ( 77) GGGAGCGGAGG 1 chr12:52610652-52610752 ( 7) GGGAGAGGAAG 1 chr19:38717176-38717276 ( 14) GGAACAGGAGG 1 chr10:99160790-99160890 ( 42) GGATGGGGAGG 1 chr10:12816095-12816195 ( 8) GGAAGGAGAGG 1 chr3:32279546-32279646 ( 68) GGGAGCGGAAG 1 chr11:64163260-64163360 ( 62) GGAAGGAGAAG 1 chr22:34225589-34225689 ( 84) GGAAGATGAGG 1 chr12:55391640-55391740 ( 9) GGAAGAGGAAA 1 chr12:56390666-56390766 ( 58) GGGAGAAGAGG 1 chr1:176176403-176176503 ( 62) GGAACGGGAAG 1 chr7:155387364-155387464 ( 33) GGAGGGAGAGG 1 chr1:211310531-211310631 ( 38) GGAAGGGGCAG 1 chr12:14956166-14956266 ( 15) GGAACCGGAAG 1 chr16:88729194-88729294 ( 17) GGAGGCAGAGG 1 chr7:31602002-31602102 ( 59) GGAACAGGATG 1 chr19:18384928-18385028 ( 90) GGAACAGGATG 1 chr2:219850037-219850137 ( 83) GGAAGCGGAAA 1 chr19:11457003-11457103 ( 36) GGAGGGGGCGG 1 chr5:141060375-141060475 ( 65) GGATGGGGATG 1 chr7:98476815-98476915 ( 29) GGATGGGGATG 1 chr5:137800365-137800465 ( 52) GGAGCAGGAAG 1 chr12:109274342-10927444 ( 73) GGGAGGAGAAG 1 chr17:76370494-76370594 ( 63) GGAGGCAGAAG 1 chr5:139496132-139496232 ( 49) GGAGCGGGAAG 1 chr2:112811476-112811576 ( 30) GGGAGATGAGG 1 chr11:19300789-19300889 ( 25) GGGAGATGAGG 1 chr1:59543778-59543878 ( 38) GGGAGAGGAAA 1 chr9:140499521-140499621 ( 63) GGATGGGGCGG 1 chr17:77720657-77720757 ( 15) GGAACAGGAGA 1 chr19:55592120-55592220 ( 78) GGAGGGGGAAA 1 chr11:122932773-12293287 ( 47) GGCGGGGGAGG 1 chr12:123458870-12345897 ( 88) GGGACCGGAAG 1 chr12:51632222-51632322 ( 69) GGAAGAGGACG 1 chr17:40481294-40481394 ( 76) GGAGGATGAAG 1 chr12:46119477-46119577 ( 86) GGCAGAGGATG 1 chr22:41128916-41129016 ( 73) GGAGGCTGAGG 1 chr8:72520598-72520698 ( 73) GGAAGCAGCGG 1 chr2:80297546-80297646 ( 57) GGAAGAAGAAA 1 chr1:204620827-204620927 ( 61) GGAAGCAGAGA 1 chr11:94701520-94701620 ( 3) GGAAGAAGAAA 1 chr3:186131151-186131251 ( 22) GGAGGAAGCGG 1 chr3:52351393-52351493 ( 60) GGCTGGGGAGG 1 chr1:161228089-161228189 ( 85) GGGGCCGGAGG 1 chr6:41393921-41394021 ( 64) GGAGGGGGCTG 1 chr4:82433833-82433933 ( 28) GGAGGCTGAAG 1 chr6:39082375-39082475 ( 35) GGAAGCAGCAG 1 chr17:2304679-2304779 ( 85) GGGTGCGGATG 1 chrX:1768326-1768426 ( 71) GGGGGATGAGG 1 chr15:51937529-51937629 ( 80) GGGGGATGAGG 1 chr1:24790050-24790150 ( 12) GGCTGCGGAGG 1 chr15:90233594-90233694 ( 32) GGGAGGGGCTG 1 chr4:78076706-78076806 ( 42) GGAGGGAGAGA 1 chr19:10046762-10046862 ( 82) GGGTGGGGCGG 1 chr7:92464540-92464640 ( 27) GGAGGCGGCTG 1 chr8:23540171-23540271 ( 88) GGGAGGAGCGG 1 chr17:21029930-21030030 ( 39) GGCTGGGGAAG 1 chr11:36722431-36722531 ( 35) GGATGAGGATA 1 chr17:3910262-3910362 ( 8) GGGACCAGAGG 1 chr9:3696132-3696232 ( 55) GGGTCAGGAAG 1 chr20:31640630-31640730 ( 52) GGCAGGGGAGA 1 chr19:711197-711297 ( 90) GGAGGAAGAAA 1 chr1:156638737-156638837 ( 65) GGAAGGAGATA 1 chr20:12233291-12233391 ( 3) GGAAGACGAGG 1 chr16:29822455-29822555 ( 87) GGATGCGGCTG 1 chr5:133450352-133450452 ( 26) GGGACCGGCGG 1 chr5:33440634-33440734 ( 51) GGAACGAGCAG 1 chr7:138794251-138794351 ( 71) GGGTGAGGATA 1 chr2:150385115-150385215 ( 51) GGAACCTGATG 1 chr6:127623586-127623686 ( 89) CGAAGAGGAAG 1 chr16:22018651-22018751 ( 3) GGAACGGGCAA 1 chr19:46002690-46002790 ( 68) GGCACGGGAGA 1 chr14:106877040-10687714 ( 55) GGAGGGAGACG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAAGVGGARG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 11 n= 54000 bayes= 10.3068 E= 4.9e-004 -1305 -435 204 -1305 -1305 -1305 206 -1305 134 -154 11 -1305 109 -1305 17 -56 -1305 -26 174 -1305 70 4 46 -1305 -14 -435 143 -129 -1305 -1305 206 -1305 166 -44 -1305 -1305 39 -335 93 -56 -46 -1305 176 -1305 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAAGVGGARG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 11 nsites= 85 E= 4.9e-004 0.000000 0.011765 0.988235 0.000000 0.000000 0.000000 1.000000 0.000000 0.658824 0.082353 0.258824 0.000000 0.552941 0.000000 0.270588 0.176471 0.000000 0.200000 0.800000 0.000000 0.423529 0.247059 0.329412 0.000000 0.235294 0.011765 0.647059 0.105882 0.000000 0.000000 1.000000 0.000000 0.823529 0.176471 0.000000 0.000000 0.341176 0.023529 0.458824 0.176471 0.188235 0.000000 0.811765 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAAGVGGARG MEME-3 regular expression -------------------------------------------------------------------------------- GG[AG][AG][GC][AGC][GA]GA[GA]G -------------------------------------------------------------------------------- Time 929.53 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:17504891-17504991 9.34e-01 100 chr1:154539852-154539952 1.22e-05 49_[-1(2.13e-06)]_21 chr22:36310345-36310445 6.96e-01 100 chr1:62365255-62365355 9.91e-01 100 chr13:111528748-11152884 7.64e-02 100 chr7:103213765-103213865 1.00e+00 100 chr17:37845125-37845225 8.88e-01 100 chr7:138794251-138794351 9.84e-02 100 chrX:37920246-37920346 8.75e-01 100 chr14:34234216-34234316 3.43e-06 57_[+1(4.74e-08)]_13 chr6:79758202-79758302 2.79e-01 100 chr5:72334729-72334829 2.00e-03 28_[-3(8.24e-07)]_61 chr7:151001771-151001871 8.71e-09 28_[+3(2.10e-07)]_19_[-1(7.12e-07)]_\ 12 chr19:3185133-3185233 6.90e-01 100 chr11:100726498-10072659 8.75e-01 100 chr1:10875088-10875188 2.35e-01 100 chr8:23540171-23540271 2.33e-05 18_[-1(9.56e-06)]_20_[-1(7.90e-06)]_\ 2 chr20:49687054-49687154 9.29e-01 100 chr7:120991887-120991987 9.85e-01 100 chr1:27339169-27339269 2.47e-02 3_[-1(8.39e-05)]_67 chr17:11234065-11234165 1.64e-03 56_[+2(1.66e-05)]_29 chr6:127247970-127248070 5.71e-01 100 chr19:8657238-8657338 1.11e-03 7_[+2(4.48e-06)]_20_[+2(6.72e-05)]_\ 18_[+2(4.48e-06)]_10 chr12:119055639-11905573 9.99e-01 100 chr19:19245635-19245735 2.35e-01 100 chr11:19300789-19300889 4.84e-03 24_[+3(2.87e-05)]_65 chr10:102672884-10267298 8.73e-01 100 chr13:63119004-63119104 8.38e-01 100 chr14:74416452-74416552 5.13e-04 11_[-2(2.01e-06)]_74 chr11:3400160-3400260 5.82e-03 79_[+2(4.48e-06)]_6 chr7:16873563-16873663 1.00e+00 100 chr17:37426858-37426958 1.00e+00 100 chr2:72830974-72831074 9.99e-01 100 chr8:112439187-112439287 6.78e-01 100 chr9:135682079-135682179 9.86e-01 100 chr5:169679365-169679465 9.97e-01 100 chr11:122932773-12293287 2.83e-06 1_[+1(5.41e-08)]_14_[+1(9.56e-06)]_\ 25 chr4:172747606-172747706 9.26e-02 100 chr5:115223485-115223585 9.07e-01 100 chr18:34624897-34624997 9.62e-01 100 chr15:59646116-59646216 9.72e-01 100 chr11:64163260-64163360 2.59e-03 61_[-3(8.52e-06)]_28 chr10:99486188-99486288 2.83e-01 100 chr19:39930660-39930760 9.59e-01 100 chr19:48903008-48903108 2.02e-02 100 chr11:9910182-9910282 3.68e-01 100 chr11:35484079-35484179 8.23e-01 100 chr6:15674788-15674888 2.76e-04 43_[-1(2.37e-06)]_27 chr20:12233291-12233391 7.76e-02 2_[+3(8.88e-05)]_87 chr11:84660776-84660876 9.97e-01 100 chr12:14981583-14981683 7.15e-01 100 chr12:4243482-4243582 1.31e-03 82_[-2(6.59e-07)]_3 chr2:20526300-20526400 6.94e-01 100 chrX:39512710-39512810 4.35e-01 100 chr5:153418182-153418282 8.90e-03 39_[+1(5.16e-05)]_31 chr11:20902667-20902767 9.87e-01 100 chr12:122707810-12270791 1.78e-01 100 chr1:43814786-43814886 1.90e-03 2_[-1(5.90e-06)]_26_[-1(4.75e-05)]_\ 12 chr2:164983554-164983654 9.57e-01 100 chr19:12098074-12098174 2.02e-01 100 chr20:31640630-31640730 7.91e-02 51_[+3(7.55e-05)]_38 chr1:68142903-68143003 1.02e-01 100 chr19:39926361-39926461 8.36e-13 35_[+1(8.84e-09)]_12_[+2(4.89e-09)]_\ 8 chr19:58110776-58110876 1.27e-01 100 chr3:114054849-114054949 1.00e+00 100 chr12:55413401-55413501 4.63e-04 76_[+3(1.63e-06)]_13 chr3:169939535-169939635 4.18e-01 100 chr3:47629769-47629869 5.93e-05 66_[-1(7.90e-06)]_4 chr8:72520598-72520698 4.94e-02 72_[+3(3.90e-05)]_17 chr20:30449468-30449568 3.80e-01 100 chr5:52217956-52218056 3.52e-01 100 chr1:202162569-202162669 4.51e-08 51_[-1(1.64e-09)]_19 chr10:861302-861402 8.03e-01 100 chr1:204960309-204960409 1.43e-01 100 chr7:92464540-92464640 1.28e-02 26_[-3(6.85e-05)]_63 chr1:18236544-18236644 9.76e-01 100 chr10:69608985-69609085 8.88e-01 100 chr19:47753666-47753766 9.55e-01 100 chr6:101020937-101021037 9.99e-01 100 chr15:48298131-48298231 8.29e-01 100 chr2:118756807-118756907 8.49e-01 100 chr14:89907268-89907368 8.89e-01 100 chr1:211310531-211310631 8.19e-04 37_[+3(1.28e-05)]_52 chr17:39683071-39683171 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1.00e+00 100 chr19:9929862-9929962 1.41e-08 14_[+2(2.48e-06)]_36_[+1(2.76e-08)]_\ 5 chr19:14183837-14183937 5.11e-05 29_[+1(8.39e-05)]_4_[-3(1.18e-05)]_\ 11_[-3(1.23e-06)]_4 chr11:3010065-3010165 8.00e-01 100 chr12:109274342-10927444 2.25e-02 72_[-3(2.51e-05)]_17 chr6:87739214-87739314 8.19e-01 100 chr16:68057551-68057651 9.07e-01 100 chr15:90233594-90233694 2.27e-05 31_[+3(6.39e-05)]_16_[+2(1.64e-06)]_\ 27 chr1:160694333-160694433 9.95e-01 100 chr1:10692078-10692178 2.67e-01 100 chr2:216974100-216974200 1.70e-08 20_[-1(1.72e-07)]_18_[-2(4.96e-06)]_\ 17 chr2:219850037-219850137 6.47e-07 11_[-1(5.05e-07)]_41_[-3(1.99e-05)]_\ 7 chr5:141303434-141303534 2.59e-02 100 chr13:76140142-76140242 1.00e+00 100 chr20:62184443-62184543 5.57e-05 3_[+1(5.16e-05)]_12_[+1(6.36e-07)]_\ 25 chr16:30457075-30457175 2.29e-01 100 chr19:3115995-3116095 1.07e-03 25_[+1(3.96e-06)]_45 chr5:33440634-33440734 2.98e-05 70_[+2(4.65e-07)]_15 chr14:28482216-28482316 9.38e-01 100 chr2:54330784-54330884 1.04e-01 100 chr4:3371383-3371483 6.90e-01 100 chr9:34601993-34602093 1.26e-02 48_[-1(6.60e-05)]_22 chr7:123349204-123349304 1.00e+00 100 chr7:44162849-44162949 2.31e-03 26_[-1(4.84e-06)]_44 chr1:185562752-185562852 5.20e-01 100 chr1:86158221-86158321 9.71e-01 100 chr18:51015671-51015771 8.52e-01 100 chr5:55290787-55290887 9.71e-09 35_[-1(1.81e-10)]_35 chr3:8194201-8194301 3.31e-03 19_[-3(3.04e-06)]_70 chr2:178007919-178008019 5.06e-01 100 chr4:190706511-190706611 6.89e-01 100 chr19:46000339-46000439 1.47e-02 100 chr16:6327864-6327964 4.95e-01 100 chr2:729141-729241 8.10e-01 100 chr3:85353133-85353233 9.99e-01 100 chr12:55391640-55391740 1.57e-05 8_[-3(1.18e-05)]_21_[-1(9.98e-07)]_\ 30 chr17:40575135-40575235 7.60e-06 1_[+1(7.12e-07)]_69 chr6:31707164-31707264 5.75e-02 100 chr9:108633336-108633436 8.01e-01 100 chr6:70439716-70439816 8.78e-01 100 chr1:234508838-234508938 5.09e-03 6_[-2(6.47e-06)]_79 chr7:98297310-98297410 9.22e-03 70_[+2(8.50e-06)]_15 chr5:115174818-115174918 4.46e-01 100 chr16:21964246-21964346 5.14e-02 100 chr1:156289337-156289437 9.28e-01 100 chr14:24861746-24861846 1.86e-01 100 chr12:83075845-83075945 8.80e-01 100 chr19:18384928-18385028 7.37e-06 51_[+2(5.81e-07)]_23_[+3(1.99e-05)] chr3:159928510-159928610 1.82e-01 100 chr4:83955986-83956086 8.12e-04 37_[+1(2.91e-06)]_33 chr7:155387364-155387464 2.59e-03 32_[+3(1.28e-05)]_57 chr8:23896705-23896805 8.25e-03 54_[+1(2.61e-05)]_16 chr21:45661185-45661285 3.26e-02 30_[+1(4.75e-05)]_40 chr12:50444737-50444837 3.29e-02 13_[-2(6.29e-05)]_72 chr19:50879857-50879957 1.13e-10 20_[+2(5.81e-07)]_20_[+1(6.58e-09)]_\ 15 chr6:127623586-127623686 2.66e-01 100 chr8:120875095-120875195 9.99e-01 100 chr2:97202164-97202264 4.14e-01 100 chr19:49956376-49956476 8.53e-05 52_[-1(6.51e-06)]_18 chr22:37307600-37307700 1.00e+00 100 chr13:21140843-21140943 3.58e-11 57_[-1(1.51e-10)]_13 chr14:106877040-10687714 3.06e-04 79_[-2(6.47e-06)]_6 chr5:126632858-126632958 4.79e-01 100 chr11:32681170-32681270 7.52e-01 100 chr10:33294486-33294586 8.11e-01 100 chr16:29822455-29822555 4.91e-06 23_[-1(1.04e-07)]_33_[+3(9.55e-05)]_\ 3 chr3:194981191-194981291 1.37e-03 4_[-2(5.91e-06)]_81 chr3:73674324-73674424 1.35e-02 100 chr12:51632222-51632322 3.30e-03 5_[+1(7.75e-05)]_33_[+3(3.90e-05)]_\ 21 chr11:57092272-57092372 6.01e-02 100 chr10:30073135-30073235 8.56e-01 100 chr6:110057645-110057745 9.12e-01 100 chr1:24790050-24790150 7.82e-03 11_[-3(6.39e-05)]_78 chr11:78125439-78125539 1.00e+00 100 chr1:236292495-236292595 6.59e-01 100 chr3:124079469-124079569 9.91e-01 100 chr2:84743141-84743241 1.25e-01 100 chr1:158161059-158161159 9.88e-01 100 chr11:62320666-62320766 7.26e-02 100 chr19:46318756-46318856 1.22e-01 100 chr17:43098002-43098102 1.90e-04 76_[+3(3.64e-06)]_13 chr2:220324684-220324784 4.30e-01 100 chr5:150875563-150875663 6.29e-01 100 chr6:26594159-26594259 9.46e-01 100 chr9:129623965-129624065 6.80e-01 100 chr7:134201200-134201300 6.35e-02 100 chr5:157391731-157391831 8.74e-01 100 chr7:106808324-106808424 8.95e-03 100 chr12:107117035-10711713 2.98e-03 100 chr6:41393921-41394021 2.88e-05 25_[+1(2.13e-06)]_8_[+3(5.78e-05)]_\ 26 chr8:105504421-105504521 9.17e-01 100 chr3:191109708-191109808 8.29e-01 100 chr5:74501298-74501398 8.85e-01 100 chr12:87346537-87346637 8.88e-01 100 chr5:139496132-139496232 2.60e-02 48_[+3(2.87e-05)]_41 chr4:164477034-164477134 9.93e-01 100 chr3:137816552-137816652 1.01e-01 100 chr11:75054270-75054370 2.07e-01 100 chr1:21636567-21636667 2.07e-04 22_[+2(2.79e-07)]_63 chr14:70540993-70541093 4.56e-01 100 chr8:8897621-8897721 9.64e-01 100 chr17:76370494-76370594 5.70e-03 62_[+3(2.87e-05)]_27 chr11:104022175-10402227 9.99e-01 100 chr4:78076706-78076806 7.75e-02 41_[+3(6.85e-05)]_48 chr6:116538099-116538199 9.97e-01 100 chr5:58613115-58613215 5.24e-02 100 chr7:149781772-149781872 9.14e-02 100 chr12:93813312-93813412 9.38e-01 100 chr12:113261412-11326151 1.30e-01 100 chrX:53220031-53220131 6.12e-01 100 chr13:48172253-48172353 1.00e+00 100 chr11:118779557-11877965 9.09e-06 9_[+1(3.96e-06)]_6_[+1(7.04e-08)]_\ 25 chr17:63557572-63557672 1.30e-08 58_[-1(7.63e-09)]_12 chr2:238009579-238009679 4.67e-02 100 chr2:80297546-80297646 2.65e-02 56_[-3(4.40e-05)]_33 chr10:4856705-4856805 9.35e-01 100 chr19:13858244-13858344 1.75e-06 56_[-1(3.15e-07)]_14 chr11:57267208-57267308 1.94e-03 32_[+1(2.00e-05)]_38 chr17:40559271-40559371 1.14e-02 100 chr19:46002690-46002790 2.80e-06 39_[+2(7.49e-07)]_46 chr19:49479337-49479437 3.47e-01 100 chr16:11349826-11349926 1.22e-04 14_[-1(3.11e-05)]_26_[-1(7.17e-06)] chr22:34225589-34225689 2.73e-02 83_[+3(9.56e-06)]_6 chr19:42070066-42070166 4.41e-01 100 chr12:70133391-70133491 5.80e-01 100 chr6:166814614-166814714 2.47e-02 45_[-2(9.25e-06)]_40 chr19:55598045-55598145 8.23e-01 100 chr1:14138003-14138103 2.26e-07 25_[+1(7.63e-09)]_45 chr19:18303436-18303536 9.37e-02 100 chr12:119615934-11961603 7.44e-03 12_[+2(7.17e-05)]_73 chr7:31602002-31602102 5.82e-02 58_[-3(1.99e-05)]_31 chr2:150385115-150385215 1.94e-01 100 chr20:48595366-48595466 5.21e-01 100 chr3:32388889-32388989 8.13e-01 100 chr19:12904489-12904589 1.47e-05 14_[+1(2.19e-05)]_26_[-1(7.98e-07)] chr1:150459534-150459634 6.30e-02 100 chr9:19102554-19102654 1.28e-03 19_[+1(7.17e-06)]_51 chr12:123458870-12345897 6.90e-03 87_[+3(3.90e-05)]_2 chr14:35874117-35874217 3.38e-02 100 chr1:119025630-119025730 9.05e-01 100 chr1:32110376-32110476 6.50e-02 100 chr19:12791708-12791808 2.42e-04 34_[-2(6.59e-07)]_51 chr2:70955190-70955290 2.20e-01 100 chr7:99647005-99647105 4.58e-06 29_[+1(1.24e-06)]_41 chr6:36816519-36816619 4.40e-06 29_[-1(2.63e-06)]_41 chr2:156225267-156225367 9.56e-01 100 chr4:26031599-26031699 3.33e-03 53_[+3(8.24e-07)]_36 chr17:21029930-21030030 6.82e-03 38_[+3(7.55e-05)]_51 chr5:45774642-45774742 1.00e+00 100 chr9:117424667-117424767 4.13e-01 100 chr9:35616592-35616692 1.26e-02 2_[+1(2.00e-05)]_68 chr1:175301404-175301504 2.09e-01 100 chr1:221064346-221064446 6.66e-02 100 chr15:57947887-57947987 9.24e-01 100 chr1:205413759-205413859 1.68e-08 7_[-1(1.02e-08)]_63 chr9:14748555-14748655 9.95e-01 100 chr11:199644-199744 5.67e-02 100 chr20:35214105-35214205 2.17e-01 100 chr14:22771348-22771448 8.28e-01 100 chr2:67556897-67556997 1.13e-01 100 chr5:172565565-172565665 9.43e-01 100 chr9:4985515-4985615 8.80e-01 100 chr6:42714051-42714151 3.06e-04 17_[-1(7.17e-06)]_53 chr3:42932338-42932438 7.80e-01 100 chr19:38717176-38717276 1.68e-02 13_[+3(4.44e-06)]_76 chr1:154118281-154118381 8.47e-01 100 chr15:43213112-43213212 6.70e-04 79_[-3(2.21e-06)]_10 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: indra.stanford.edu ********************************************************************************