# DREME 4.12.0 # command: dreme -v 1 -oc cutnotseq_memechip_out/dreme_out -png -dna -p cutnotseq_memechip_out/seqs-centered -n cutnotseq_memechip_out/seqs-shuffled # positives: 16563 from cutnotseq_memechip_out/seqs-centered (Mon Oct 28 20:52:47 PDT 2019) # negatives: 16563 from cutnotseq_memechip_out/seqs-shuffled (Mon Oct 28 20:52:47 PDT 2019) # host: indra.stanford.edu # when: Mon Oct 28 21:08:48 PDT 2019 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.255 C 0.245 G 0.245 T 0.256 MOTIF GGGCGGRR DREME-1 # Word RC Word Pos Neg P-value E-value # BEST GGGCGGRR YYCCGCCC 1349 427 2.7e-117 1.2e-112 # GGGCGGGG CCCCGCCC 844 192 3.6e-101 1.6e-096 # GGGCGGAG CTCCGCCC 337 112 7.0e-028 3.2e-023 # GGGCGGGA TCCCGCCC 250 99 1.2e-016 5.4e-012 # GGGCGGAA TTCCGCCC 90 44 4.2e-005 1.9e+000 letter-probability matrix: alength= 4 w= 8 nsites= 1712 E= 1.2e-112 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.252336 0.000000 0.747664 0.000000 0.202687 0.000000 0.797313 0.000000 MOTIF HTTYCY DREME-2 # Word RC Word Pos Neg P-value E-value # BEST HTTYCY RGRAAD 11310 9420 1.2e-102 5.5e-098 # TTTCCT AGGAAA 2358 1510 3.2e-048 1.5e-043 # ATTCCT AGGAAT 1583 1004 7.4e-033 3.3e-028 # TTTTCT AGAAAA 2527 1806 3.3e-032 1.5e-027 # ATTTCC GGAAAT 1487 933 4.8e-032 2.2e-027 # CTTCCT AGGAAG 2191 1572 4.0e-027 1.8e-022 # TTTCCC GGGAAA 1871 1350 2.2e-022 9.9e-018 # ATTTCT AGAAAT 1609 1187 3.9e-017 1.8e-012 # TTTTCC GGAAAA 1844 1425 6.3e-015 2.8e-010 # CTTTCC GGAAAG 1739 1353 1.7e-013 7.6e-009 # ATTCCC GGGAAT 1064 793 5.3e-011 2.4e-006 # CTTTCT AGAAAG 1955 1597 1.1e-010 5.1e-006 # CTTCCC GGGAAG 1892 1582 1.5e-008 6.7e-004 letter-probability matrix: alength= 4 w= 6 nsites= 19409 E= 5.5e-098 0.280334 0.377402 0.000000 0.342264 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.496522 0.000000 0.503478 0.000000 1.000000 0.000000 0.000000 0.000000 0.394714 0.000000 0.605286 MOTIF AAATRY DREME-3 # Word RC Word Pos Neg P-value E-value # BEST AAATRY RYATTT 3670 2580 2.6e-053 1.1e-048 # AAATGT ACATTT 1238 836 3.7e-020 1.6e-015 # AAATAT ATATTT 1124 749 2.2e-019 9.8e-015 # AAATAC GTATTT 818 543 1.4e-014 6.1e-010 # AAATGC GCATTT 1028 741 1.2e-012 5.5e-008 letter-probability matrix: alength= 4 w= 6 nsites= 4463 E= 1.1e-048 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.465382 0.000000 0.534618 0.000000 0.000000 0.431772 0.000000 0.568228 MOTIF CCASYAGG DREME-4 # Word RC Word Pos Neg P-value E-value # BEST CCASYAGG CCTRSTGG 737 300 1.3e-044 5.5e-040 # CCACTAGG CCTAGTGG 194 60 4.5e-018 2.0e-013 # CCAGCAGG CCTGCTGG 243 108 1.7e-013 7.3e-009 # CCACCAGG CCTGGTGG 208 86 3.2e-013 1.4e-008 # CCAGTAGG CCTACTGG 99 46 6.1e-006 2.7e-001 letter-probability matrix: alength= 4 w= 8 nsites= 745 E= 5.5e-040 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.539597 0.460403 0.000000 0.000000 0.605369 0.000000 0.394631 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF CYCCWCCC DREME-5 # Word RC Word Pos Neg P-value E-value # BEST CYCCWCCC GGGWGGRG 1291 737 1.6e-037 6.9e-033 # CTCCTCCC GGGAGGAG 382 195 1.6e-015 7.2e-011 # CCCCACCC GGGTGGGG 367 193 5.4e-014 2.3e-009 # CCCCTCCC GGGAGGGG 432 276 1.7e-009 7.4e-005 # CTCCACCC GGGTGGAG 212 117 7.9e-008 3.4e-003 letter-probability matrix: alength= 4 w= 8 nsites= 1423 E= 6.9e-033 0.000000 1.000000 0.000000 0.000000 0.000000 0.571328 0.000000 0.428672 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.409698 0.000000 0.000000 0.590302 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CMCGCCYC DREME-6 # Word RC Word Pos Neg P-value E-value # BEST CMCGCCYC GRGGCGKG 604 249 6.0e-036 2.6e-031 # CCCGCCTC GAGGCGGG 271 109 1.6e-017 7.1e-013 # CACGCCCC GGGGCGTG 166 56 3.2e-014 1.4e-009 # CCCGCCCC GGGGCGGG 137 61 3.1e-008 1.4e-003 # CACGCCTC GAGGCGTG 62 31 8.4e-004 3.7e+001 letter-probability matrix: alength= 4 w= 8 nsites= 664 E= 2.6e-031 0.000000 1.000000 0.000000 0.000000 0.364458 0.635542 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.480422 0.000000 0.519578 0.000000 1.000000 0.000000 0.000000 MOTIF CTVCAGS DREME-7 # Word RC Word Pos Neg P-value E-value # BEST CTVCAGS SCTGBAG 2119 1477 3.8e-030 1.6e-025 # CTGCAGG CCTGCAG 524 309 2.2e-014 9.5e-010 # CTCCAGG CCTGGAG 595 390 1.8e-011 7.7e-007 # CTGCAGC GCTGCAG 497 318 1.2e-010 5.1e-006 # CTCCAGC GCTGGAG 457 359 2.9e-004 1.3e+001 # CTACAGG CCTGTAG 214 154 9.7e-004 4.2e+001 # CTACAGC GCTGTAG 163 117 3.4e-003 1.5e+002 letter-probability matrix: alength= 4 w= 7 nsites= 2308 E= 1.6e-025 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.164211 0.468804 0.366984 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.453640 0.546360 0.000000 MOTIF CRCWG DREME-8 # Word RC Word Pos Neg P-value E-value # BEST CRCWG CWGYG 8220 7196 9.0e-030 3.9e-025 # CACAG CTGTG 3804 3096 5.2e-022 2.3e-017 # CACTG CAGTG 3485 2993 5.1e-012 2.2e-007 # CGCAG CTGCG 1863 1661 1.7e-004 7.4e+000 # CGCTG CAGCG 1798 1620 6.9e-004 3.0e+001 letter-probability matrix: alength= 4 w= 5 nsites= 11890 E= 3.9e-025 0.000000 1.000000 0.000000 0.000000 0.668124 0.000000 0.331876 0.000000 0.000000 1.000000 0.000000 0.000000 0.525399 0.000000 0.000000 0.474601 0.000000 0.000000 1.000000 0.000000 MOTIF ATGYWAAT DREME-9 # Word RC Word Pos Neg P-value E-value # BEST ATGYWAAT ATTWRCAT 470 187 7.3e-030 3.1e-025 # ATGCAAAT ATTTGCAT 165 44 4.6e-018 1.9e-013 # ATGCTAAT ATTAGCAT 103 44 6.0e-007 2.5e-002 # ATGTAAAT ATTTACAT 114 53 1.3e-006 5.4e-002 # ATGTTAAT ATTAACAT 105 47 1.4e-006 5.8e-002 letter-probability matrix: alength= 4 w= 8 nsites= 488 E= 3.1e-025 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.547131 0.000000 0.452869 0.573770 0.000000 0.000000 0.426230 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 MOTIF CHGGRA DREME-10 # Word RC Word Pos Neg P-value E-value # BEST CHGGRA TYCCDG 4034 3251 1.5e-025 6.3e-021 # CTGGGA TCCCAG 1220 922 1.5e-011 6.4e-007 # CCGGAA TTCCGG 473 311 2.6e-009 1.1e-004 # CTGGAA TTCCAG 1036 822 1.8e-007 7.5e-003 # CCGGGA TCCCGG 555 433 4.6e-005 1.9e+000 # CAGGGA TCCCTG 1070 913 1.5e-004 6.3e+000 # CAGGAA TTCCTG 290 216 5.3e-004 2.2e+001 letter-probability matrix: alength= 4 w= 6 nsites= 4738 E= 6.3e-021 0.000000 1.000000 0.000000 0.000000 0.289152 0.222457 0.000000 0.488392 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.389405 0.000000 0.610595 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF ATTGGCYR DREME-11 # Word RC Word Pos Neg P-value E-value # BEST ATTGGCYR YRGCCAAT 349 142 9.6e-022 4.0e-017 # ATTGGCTG CAGCCAAT 142 44 1.4e-013 5.7e-009 # ATTGGCCG CGGCCAAT 54 17 6.1e-006 2.6e-001 # ATTGGCTA TAGCCAAT 77 35 4.4e-005 1.8e+000 # ATTGGCCA TGGCCAAT 84 47 7.6e-004 3.2e+001 letter-probability matrix: alength= 4 w= 8 nsites= 362 E= 4.0e-017 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.383978 0.000000 0.616022 0.447514 0.000000 0.552486 0.000000 MOTIF AWAAYAAA DREME-12 # Word RC Word Pos Neg P-value E-value # BEST AWAAYAAA TTTRTTWT 715 424 7.4e-019 3.1e-014 # AAAACAAA TTTGTTTT 249 130 4.0e-010 1.7e-005 # AAAATAAA TTTATTTT 246 156 3.7e-006 1.5e-001 # ATAACAAA TTTGTTAT 120 63 1.4e-005 6.0e-001 # ATAATAAA TTTATTAT 129 90 4.9e-003 2.0e+002 letter-probability matrix: alength= 4 w= 8 nsites= 754 E= 3.1e-014 1.000000 0.000000 0.000000 0.000000 0.673740 0.000000 0.000000 0.326260 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.500000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CTSCCTCY DREME-13 # Word RC Word Pos Neg P-value E-value # BEST CTSCCTCY RGAGGSAG 698 421 1.7e-017 6.9e-013 # CTCCCTCC GGAGGGAG 231 130 5.0e-008 2.1e-003 # CTGCCTCT AGAGGCAG 169 86 1.0e-007 4.2e-003 # CTGCCTCC GGAGGCAG 148 97 6.5e-004 2.7e+001 # CTCCCTCT AGAGGGAG 178 123 8.6e-004 3.6e+001 letter-probability matrix: alength= 4 w= 8 nsites= 726 E= 6.9e-013 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.560606 0.439394 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.531680 0.000000 0.468320 MOTIF TKTAWA DREME-14 # Word RC Word Pos Neg P-value E-value # BEST TKTAWA TWTAMA 2780 2264 1.6e-015 6.7e-011 # TTTAAA TTTAAA 947 731 3.5e-008 1.4e-003 # TGTAAA TTTACA 854 660 1.8e-007 7.7e-003 # TTTATA TATAAA 861 758 4.7e-003 1.9e+002 # TGTATA TATACA 479 408 8.6e-003 3.6e+002 letter-probability matrix: alength= 4 w= 6 nsites= 3265 E= 6.7e-011 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.417152 0.582848 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.581011 0.000000 0.000000 0.418989 1.000000 0.000000 0.000000 0.000000 MOTIF CACCRCS DREME-15 # Word RC Word Pos Neg P-value E-value # BEST CACCRCS SGYGGTG 701 442 3.1e-015 1.3e-010 # CACCGCC GGCGGTG 242 136 2.3e-008 9.5e-004 # CACCACC GGTGGTG 273 188 3.9e-005 1.6e+000 # CACCGCG CGCGGTG 120 74 5.7e-004 2.4e+001 # CACCACG CGTGGTG 90 55 2.2e-003 9.3e+001 letter-probability matrix: alength= 4 w= 7 nsites= 727 E= 1.3e-010 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.496561 0.000000 0.503439 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.709766 0.290234 0.000000 MOTIF CASGTR DREME-16 # Word RC Word Pos Neg P-value E-value # BEST CASGTR YACSTG 1756 1371 2.5e-013 1.0e-008 # CACGTG CACGTG 179 88 1.2e-008 4.9e-004 # CAGGTG CACCTG 956 765 1.2e-006 5.2e-002 # CAGGTA TACCTG 558 451 3.5e-004 1.4e+001 # CACGTA TACGTG 142 101 4.9e-003 2.0e+002 letter-probability matrix: alength= 4 w= 6 nsites= 1909 E= 1.0e-008 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.172342 0.827658 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.374542 0.000000 0.625458 0.000000 MOTIF AGAAA DREME-17 # Word RC Word Pos Neg P-value E-value # BEST AGAAA TTTCT 1285 959 5.5e-013 2.3e-008 # AGAAA TTTCT 1285 959 5.5e-013 2.3e-008 letter-probability matrix: alength= 4 w= 5 nsites= 1343 E= 2.3e-008 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CCAATCAS DREME-18 # Word RC Word Pos Neg P-value E-value # BEST CCAATCAS STGATTGG 166 61 8.7e-013 3.5e-008 # CCAATCAG CTGATTGG 106 37 3.1e-009 1.3e-004 # CCAATCAC GTGATTGG 61 24 3.6e-005 1.5e+000 letter-probability matrix: alength= 4 w= 8 nsites= 171 E= 3.5e-008 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.356725 0.643275 0.000000 MOTIF KTCATTY DREME-19 # Word RC Word Pos Neg P-value E-value # BEST KTCATTY RAATGAM 979 699 1.2e-012 5.0e-008 # GTCATTC GAATGAC 164 97 1.9e-005 7.7e-001 # TTCATTT AAATGAA 382 278 2.5e-005 1.0e+000 # TTCATTC GAATGAA 276 192 5.4e-005 2.2e+000 # GTCATTT AAATGAC 198 143 1.6e-003 6.6e+001 letter-probability matrix: alength= 4 w= 7 nsites= 1024 E= 5.0e-008 0.000000 0.000000 0.354492 0.645508 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.434570 0.000000 0.565430 MOTIF ACASACAY DREME-20 # Word RC Word Pos Neg P-value E-value # BEST ACASACAY RTGTSTGT 224 103 7.6e-012 3.1e-007 # ACACACAC GTGTGTGT 94 34 5.1e-008 2.1e-003 # ACACACAT ATGTGTGT 72 37 5.1e-004 2.1e+001 # ACAGACAC GTGTCTGT 37 17 4.5e-003 1.8e+002 # ACAGACAT ATGTCTGT 43 22 6.2e-003 2.5e+002 letter-probability matrix: alength= 4 w= 8 nsites= 262 E= 3.1e-007 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.702290 0.297710 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.580153 0.000000 0.419847 MOTIF GCCACRCC DREME-21 # Word RC Word Pos Neg P-value E-value # BEST GCCACRCC GGYGTGGC 159 61 1.3e-011 5.1e-007 # GCCACGCC GGCGTGGC 82 23 2.8e-009 1.2e-004 # GCCACACC GGTGTGGC 78 38 1.3e-004 5.1e+000 letter-probability matrix: alength= 4 w= 8 nsites= 162 E= 5.1e-007 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.481481 0.000000 0.518519 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF GAGTSAC DREME-22 # Word RC Word Pos Neg P-value E-value # BEST GAGTSAC GTSACTC 292 162 4.2e-010 1.7e-005 # GAGTCAC GTGACTC 143 65 3.0e-008 1.2e-003 # GAGTGAC GTCACTC 163 102 1.0e-004 4.1e+000 letter-probability matrix: alength= 4 w= 7 nsites= 294 E= 1.7e-005 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.476190 0.523810 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CCDCCTCC DREME-23 # Word RC Word Pos Neg P-value E-value # BEST CCDCCTCC GGAGGHGG 366 219 4.6e-010 1.9e-005 # CCGCCTCC GGAGGCGG 86 40 2.5e-005 1.0e+000 # CCACCTCC GGAGGTGG 147 85 2.7e-005 1.1e+000 # CCTCCTCC GGAGGAGG 143 101 4.1e-003 1.7e+002 letter-probability matrix: alength= 4 w= 8 nsites= 376 E= 1.9e-005 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.396277 0.000000 0.220745 0.382979 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CCACTAGA DREME-24 # Word RC Word Pos Neg P-value E-value # BEST CCACTAGA TCTAGTGG 99 31 8.3e-010 3.4e-005 # CCACTAGA TCTAGTGG 99 31 8.3e-010 3.4e-005 letter-probability matrix: alength= 4 w= 8 nsites= 99 E= 3.4e-005 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GAATGY DREME-25 # Word RC Word Pos Neg P-value E-value # BEST GAATGY RCATTC 1188 928 2.8e-009 1.2e-004 # GAATGT ACATTC 618 475 6.1e-006 2.5e-001 # GAATGC GCATTC 599 468 2.6e-005 1.0e+000 letter-probability matrix: alength= 4 w= 6 nsites= 1255 E= 1.2e-004 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.492430 0.000000 0.507570 MOTIF ACCAATMG DREME-26 # Word RC Word Pos Neg P-value E-value # BEST ACCAATMG CKATTGGT 93 30 5.1e-009 2.1e-004 # ACCAATCG CGATTGGT 36 6 1.4e-006 5.7e-002 # ACCAATAG CTATTGGT 58 24 1.1e-004 4.4e+000 letter-probability matrix: alength= 4 w= 8 nsites= 95 E= 2.1e-004 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.610526 0.389474 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF ACAAAGVC DREME-27 # Word RC Word Pos Neg P-value E-value # BEST ACAAAGVC GBCTTTGT 271 154 6.1e-009 2.5e-004 # ACAAAGGC GCCTTTGT 102 51 2.2e-005 8.9e-001 # ACAAAGAC GTCTTTGT 83 46 7.0e-004 2.8e+001 # ACAAAGCC GGCTTTGT 89 57 4.9e-003 2.0e+002 letter-probability matrix: alength= 4 w= 8 nsites= 274 E= 2.5e-004 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.306569 0.321168 0.372263 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF GRACTACA DREME-28 # Word RC Word Pos Neg P-value E-value # BEST GRACTACA TGTAGTYC 112 47 1.3e-007 5.1e-003 # GAACTACA TGTAGTTC 65 28 7.7e-005 3.1e+000 # GGACTACA TGTAGTCC 48 20 4.5e-004 1.8e+001 letter-probability matrix: alength= 4 w= 8 nsites= 115 E= 5.1e-003 0.000000 0.000000 1.000000 0.000000 0.573913 0.000000 0.426087 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF ACSGAGA DREME-29 # Word RC Word Pos Neg P-value E-value # BEST ACSGAGA TCTCSGT 163 88 1.2e-006 4.7e-002 # ACGGAGA TCTCCGT 85 46 4.1e-004 1.7e+001 # ACCGAGA TCTCGGT 78 42 6.4e-004 2.6e+001 letter-probability matrix: alength= 4 w= 7 nsites= 164 E= 4.7e-002 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.475610 0.524390 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 2855.54 seconds