# DREME 4.12.0 # command: dreme -v 1 -oc seqnotcut_memechip_out/dreme_out -png -dna -p seqnotcut_memechip_out/seqs-centered -n seqnotcut_memechip_out/seqs-shuffled # positives: 26985 from seqnotcut_memechip_out/seqs-centered (Wed Oct 23 16:32:01 PDT 2019) # negatives: 26985 from seqnotcut_memechip_out/seqs-shuffled (Wed Oct 23 16:32:02 PDT 2019) # host: indra.stanford.edu # when: Wed Oct 23 16:45:26 PDT 2019 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.214 C 0.286 G 0.286 T 0.215 MOTIF AGRDGGCR DREME-1 # Word RC Word Pos Neg P-value E-value # BEST AGRDGGCR YGCCHYCT 8777 2145 1.6e-1163 7.3e-1159 # AGGGGGCG CGCCCCCT 1232 192 1.0e-190 4.6e-186 # AGAGGGCA TGCCCTCT 1382 335 1.3e-155 6.0e-151 # AGGGGGCA TGCCCCCT 1427 380 4.1e-147 1.9e-142 # AGGTGGCG CGCCACCT 644 58 9.6e-128 4.4e-123 # AGGTGGCA TGCCACCT 1061 245 2.9e-124 1.4e-119 # AGAGGGCG CGCCCTCT 773 121 5.3e-119 2.4e-114 # AGATGGCA TGCCATCT 638 124 1.6e-085 7.5e-081 # AGGAGGCG CGCCTCCT 612 135 1.5e-074 6.9e-070 # AGGAGGCA TGCCTCCT 876 313 1.1e-063 5.0e-059 # AGATGGCG CGCCATCT 352 44 1.8e-061 8.4e-057 # AGAAGGCA TGCCTTCT 264 208 5.5e-003 2.5e+002 # AGAAGGCG CGCCTTCT 100 68 8.2e-003 3.8e+002 letter-probability matrix: alength= 4 w= 8 nsites= 9432 E= 7.3e-1159 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.373198 0.000000 0.626802 0.000000 0.197943 0.000000 0.515161 0.286896 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.602417 0.000000 0.397583 0.000000 MOTIF CCASYAGR DREME-2 # Word RC Word Pos Neg P-value E-value # BEST CCASYAGR YCTRSTGG 5263 1774 1.2e-451 5.3e-447 # CCACCAGG CCTGGTGG 1106 341 4.8e-097 2.2e-092 # CCACTAGA TCTAGTGG 579 93 6.4e-088 2.9e-083 # CCACTAGG CCTAGTGG 621 114 1.3e-086 5.9e-082 # CCAGCAGG CCTGCTGG 1296 519 2.6e-079 1.2e-074 # CCAGCAGA TCTGCTGG 780 332 3.2e-043 1.4e-038 # CCACCAGA TCTGGTGG 547 212 1.1e-035 4.8e-031 # CCAGTAGG CCTACTGG 335 113 4.3e-027 2.0e-022 # CCAGTAGA TCTACTGG 215 84 9.0e-015 4.1e-010 letter-probability matrix: alength= 4 w= 8 nsites= 5549 E= 5.3e-447 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.518832 0.481168 0.000000 0.000000 0.682826 0.000000 0.317174 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.384934 0.000000 0.615066 0.000000 MOTIF GCKCCMYC DREME-3 # Word RC Word Pos Neg P-value E-value # BEST GCKCCMYC GRKGGMGC 3601 1549 1.1e-203 4.8e-199 # GCTCCCTC GAGGGAGC 877 344 1.5e-055 6.9e-051 # GCGCCCCC GGGGGCGC 673 237 4.1e-050 1.8e-045 # GCGCCCTC GAGGGCGC 373 137 8.5e-027 3.8e-022 # GCTCCACC GGTGGAGC 472 206 1.6e-025 7.2e-021 # GCGCCACC GGTGGCGC 277 85 2.6e-025 1.2e-020 # GCTCCCCC GGGGGAGC 737 430 4.2e-020 1.9e-015 # GCTCCATC GATGGAGC 256 120 8.1e-013 3.7e-008 # GCGCCATC GATGGCGC 109 37 9.4e-010 4.3e-005 letter-probability matrix: alength= 4 w= 8 nsites= 3795 E= 4.8e-199 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.375758 0.624242 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.293544 0.706456 0.000000 0.000000 0.000000 0.572069 0.000000 0.427931 0.000000 1.000000 0.000000 0.000000 MOTIF RKAAA DREME-4 # Word RC Word Pos Neg P-value E-value # BEST RKAAA TTTMY 13025 10101 3.3e-143 1.5e-138 # GGAAA TTTCC 6242 4421 8.0e-087 3.7e-082 # AGAAA TTTCT 6153 4592 6.2e-064 2.8e-059 # ATAAA TTTAT 2298 1637 3.3e-028 1.5e-023 # GTAAA TTTAC 2269 1738 1.5e-018 6.7e-014 letter-probability matrix: alength= 4 w= 5 nsites= 19107 E= 1.5e-138 0.500445 0.000000 0.499555 0.000000 0.000000 0.000000 0.744230 0.255770 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CCTSYAG DREME-5 # Word RC Word Pos Neg P-value E-value # BEST CCTSYAG CTRSAGG 4962 3209 3.2e-099 1.4e-094 # CCTCTAG CTAGAGG 905 438 5.5e-039 2.4e-034 # CCTGCAG CTGCAGG 1940 1259 7.9e-036 3.5e-031 # CCTCCAG CTGGAGG 1850 1266 1.9e-027 8.5e-023 # CCTGTAG CTACAGG 572 379 1.5e-010 6.4e-006 letter-probability matrix: alength= 4 w= 7 nsites= 5435 E= 1.4e-094 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.520515 0.479485 0.000000 0.000000 0.724747 0.000000 0.275253 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF CYGCCNCC DREME-6 # Word RC Word Pos Neg P-value E-value # BEST CYGCCNCC GGNGGCRG 2596 1566 8.7e-063 3.8e-058 # CCGCCGCC GGCGGCGG 431 194 3.6e-022 1.6e-017 # CTGCCACC GGTGGCAG 437 214 4.8e-019 2.1e-014 # CTGCCTCC GGAGGCAG 461 253 2.0e-015 8.8e-011 # CCGCCACC GGTGGCGG 172 82 7.8e-009 3.4e-004 # CTGCCGCC GGCGGCAG 309 191 6.5e-008 2.8e-003 # CTGCCCCC GGGGGCAG 551 404 9.0e-007 3.9e-002 # CCGCCTCC GGAGGCGG 219 134 3.3e-006 1.4e-001 # CCGCCCCC GGGGGCGG 288 219 1.2e-003 5.2e+001 letter-probability matrix: alength= 4 w= 8 nsites= 2788 E= 3.8e-058 0.000000 1.000000 0.000000 0.000000 0.000000 0.374103 0.000000 0.625897 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.213773 0.296270 0.251793 0.238164 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF ATTYY DREME-7 # Word RC Word Pos Neg P-value E-value # BEST ATTYY RRAAT 8823 7318 9.7e-046 4.2e-041 # ATTTT AAAAT 2452 1773 6.7e-028 2.9e-023 # ATTCC GGAAT 3605 2941 1.1e-018 4.7e-014 # ATTTC GAAAT 1199 869 7.2e-014 3.1e-009 # ATTCT AGAAT 3332 2955 2.3e-007 9.7e-003 letter-probability matrix: alength= 4 w= 5 nsites= 11182 E= 4.2e-041 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.658916 0.000000 0.341084 0.000000 0.450188 0.000000 0.549812 MOTIF CRBCTCC DREME-8 # Word RC Word Pos Neg P-value E-value # BEST CRBCTCC GGAGVYG 3842 2783 3.0e-044 1.3e-039 # CGCCTCC GGAGGCG 404 237 1.7e-011 6.9e-007 # CACCTCC GGAGGTG 978 711 2.2e-011 9.3e-007 # CAGCTCC GGAGCTG 1315 1005 2.6e-011 1.1e-006 # CGGCTCC GGAGCCG 592 400 4.2e-010 1.7e-005 # CATCTCC GGAGATG 531 397 5.1e-006 2.2e-001 # CGTCTCC GGAGACG 256 169 1.3e-005 5.6e-001 letter-probability matrix: alength= 4 w= 7 nsites= 4164 E= 1.3e-039 0.000000 1.000000 0.000000 0.000000 0.692843 0.000000 0.307157 0.000000 0.000000 0.338857 0.470941 0.190202 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF RGGAA DREME-9 # Word RC Word Pos Neg P-value E-value # BEST RGGAA TTCCY 7950 6697 3.9e-034 1.6e-029 # AGGAA TTCCT 4297 3491 2.8e-023 1.2e-018 # GGGAA TTCCC 4389 3693 2.5e-017 1.0e-012 letter-probability matrix: alength= 4 w= 5 nsites= 9423 E= 1.6e-029 0.493686 0.000000 0.506314 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CCACAHGG DREME-10 # Word RC Word Pos Neg P-value E-value # BEST CCACAHGG CCDTGTGG 744 364 1.7e-031 6.9e-027 # CCACAAGG CCTTGTGG 393 184 6.7e-019 2.8e-014 # CCACATGG CCATGTGG 253 138 2.8e-009 1.2e-004 # CCACACGG CCGTGTGG 104 44 4.3e-007 1.8e-002 letter-probability matrix: alength= 4 w= 8 nsites= 753 E= 6.9e-027 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.523240 0.139442 0.000000 0.337317 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF ACAGCRVC DREME-11 # Word RC Word Pos Neg P-value E-value # BEST ACAGCRVC GBYGCTGT 1139 658 2.5e-031 1.0e-026 # ACAGCGCC GGCGCTGT 190 58 6.1e-018 2.5e-013 # ACAGCGAC GTCGCTGT 88 24 4.3e-010 1.8e-005 # ACAGCAGC GCTGCTGT 399 260 2.8e-008 1.2e-003 # ACAGCACC GGTGCTGT 249 168 4.0e-005 1.7e+000 # ACAGCGGC GCCGCTGT 97 58 1.1e-003 4.4e+001 # ACAGCAAC GTTGCTGT 136 98 7.6e-003 3.1e+002 letter-probability matrix: alength= 4 w= 8 nsites= 1161 E= 1.0e-026 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.675280 0.000000 0.324720 0.000000 0.192076 0.378984 0.428941 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CTACTGVC DREME-12 # Word RC Word Pos Neg P-value E-value # BEST CTACTGVC GBCAGTAG 456 197 3.7e-025 1.5e-020 # CTACTGGC GCCAGTAG 171 50 4.9e-017 2.0e-012 # CTACTGAC GTCAGTAG 136 53 6.3e-010 2.6e-005 # CTACTGCC GGCAGTAG 149 94 2.5e-004 1.0e+001 letter-probability matrix: alength= 4 w= 8 nsites= 457 E= 1.5e-020 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.297593 0.328228 0.374179 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF GGWGACA DREME-13 # Word RC Word Pos Neg P-value E-value # BEST GGWGACA TGTCWCC 1228 808 1.1e-021 4.4e-017 # GGAGACA TGTCTCC 759 472 6.0e-017 2.5e-012 # GGTGACA TGTCACC 482 342 5.0e-007 2.1e-002 letter-probability matrix: alength= 4 w= 7 nsites= 1263 E= 4.4e-017 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.614410 0.000000 0.000000 0.385590 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF ACGT DREME-14 # Word RC Word Pos Neg P-value E-value # BEST ACGT ACGT 1996 1486 2.1e-019 8.5e-015 # ACGT ACGT 1996 1486 2.1e-019 8.5e-015 letter-probability matrix: alength= 4 w= 4 nsites= 2102 E= 8.5e-015 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 MOTIF AAAMAAAA DREME-15 # Word RC Word Pos Neg P-value E-value # BEST AAAMAAAA TTTTKTTT 242 84 2.7e-019 1.1e-014 # AAAAAAAA TTTTTTTT 135 43 1.3e-012 5.4e-008 # AAACAAAA TTTTGTTT 115 43 4.3e-009 1.7e-004 letter-probability matrix: alength= 4 w= 8 nsites= 271 E= 1.1e-014 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.564576 0.435424 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CRCCRCC DREME-16 # Word RC Word Pos Neg P-value E-value # BEST CRCCRCC GGYGGYG 1648 1216 5.6e-017 2.3e-012 # CACCACC GGTGGTG 761 554 4.1e-009 1.7e-004 # CGCCGCC GGCGGCG 513 375 1.7e-006 6.9e-002 # CGCCACC GGTGGCG 106 61 3.0e-004 1.2e+001 # CACCGCC GGCGGTG 330 257 1.4e-003 5.6e+001 letter-probability matrix: alength= 4 w= 7 nsites= 1723 E= 2.3e-012 0.000000 1.000000 0.000000 0.000000 0.633778 0.000000 0.366222 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500871 0.000000 0.499129 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF AMACACAS DREME-17 # Word RC Word Pos Neg P-value E-value # BEST AMACACAS STGTGTKT 497 274 2.6e-016 1.0e-011 # ACACACAC GTGTGTGT 209 87 4.2e-013 1.7e-008 # ACACACAG CTGTGTGT 199 119 4.0e-006 1.6e-001 # AAACACAG CTGTGTTT 83 50 2.6e-003 1.1e+002 # AAACACAC GTGTGTTT 75 45 3.9e-003 1.6e+002 letter-probability matrix: alength= 4 w= 8 nsites= 564 E= 1.0e-011 1.000000 0.000000 0.000000 0.000000 0.253546 0.746454 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.535461 0.464539 0.000000 MOTIF CTGYAG DREME-18 # Word RC Word Pos Neg P-value E-value # BEST CTGYAG CTRCAG 2326 1824 2.7e-016 1.1e-011 # CTGCAG CTGCAG 1499 1106 1.6e-015 6.3e-011 # CTGTAG CTACAG 876 749 7.5e-004 3.0e+001 letter-probability matrix: alength= 4 w= 6 nsites= 2438 E= 1.1e-011 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.632075 0.000000 0.367925 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF AGRGGTCR DREME-19 # Word RC Word Pos Neg P-value E-value # BEST AGRGGTCR YGACCYCT 565 340 2.2e-014 8.9e-010 # AGGGGTCA TGACCCCT 231 139 9.2e-007 3.7e-002 # AGAGGTCA TGACCTCT 178 112 6.1e-005 2.4e+000 # AGGGGTCG CGACCCCT 106 59 1.5e-004 6.2e+000 # AGAGGTCG CGACCTCT 55 32 8.9e-003 3.6e+002 letter-probability matrix: alength= 4 w= 8 nsites= 571 E= 8.9e-010 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.409807 0.000000 0.590193 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.718039 0.000000 0.281961 0.000000 MOTIF RTTAMA DREME-20 # Word RC Word Pos Neg P-value E-value # BEST RTTAMA TKTAAY 1887 1472 7.6e-014 3.1e-009 # ATTACA TGTAAT 528 360 7.3e-009 2.9e-004 # ATTAAA TTTAAT 419 334 1.0e-003 4.1e+001 # GTTAAA TTTAAC 460 375 1.7e-003 6.8e+001 # GTTACA TGTAAC 552 464 2.9e-003 1.2e+002 letter-probability matrix: alength= 4 w= 6 nsites= 1987 E= 3.1e-009 0.481631 0.000000 0.518369 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.449925 0.550075 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CWGTGGY DREME-21 # Word RC Word Pos Neg P-value E-value # BEST CWGTGGY RCCACWG 3082 2562 1.4e-013 5.5e-009 # CTGTGGC GCCACAG 1032 845 6.1e-006 2.4e-001 # CTGTGGT ACCACAG 658 532 1.2e-004 4.9e+000 # CAGTGGC GCCACTG 987 841 2.8e-004 1.1e+001 # CAGTGGT ACCACTG 576 467 3.6e-004 1.4e+001 letter-probability matrix: alength= 4 w= 7 nsites= 3286 E= 5.5e-009 0.000000 1.000000 0.000000 0.000000 0.483567 0.000000 0.000000 0.516433 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.624467 0.000000 0.375533 MOTIF GCAGCAKC DREME-22 # Word RC Word Pos Neg P-value E-value # BEST GCAGCAKC GMTGCTGC 713 482 7.5e-012 3.0e-007 # GCAGCATC GATGCTGC 222 125 9.8e-008 3.9e-003 # GCAGCAGC GCTGCTGC 505 360 3.8e-007 1.5e-002 letter-probability matrix: alength= 4 w= 8 nsites= 730 E= 3.0e-007 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.705479 0.294521 0.000000 1.000000 0.000000 0.000000 MOTIF GARRACA DREME-23 # Word RC Word Pos Neg P-value E-value # BEST GARRACA TGTYYTC 1474 1149 4.2e-011 1.7e-006 # GAAAACA TGTTTTC 129 70 1.7e-005 6.7e-001 # GAGGACA TGTCCTC 610 494 2.3e-004 9.3e+000 # GAGAACA TGTTCTC 410 317 2.9e-004 1.2e+001 # GAAGACA TGTCTTC 356 276 7.8e-004 3.1e+001 letter-probability matrix: alength= 4 w= 7 nsites= 1520 E= 1.7e-006 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.321711 0.000000 0.678289 0.000000 0.357895 0.000000 0.642105 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CCGCYAGG DREME-24 # Word RC Word Pos Neg P-value E-value # BEST CCGCYAGG CCTRGCGG 336 191 1.1e-010 4.5e-006 # CCGCCAGG CCTGGCGG 247 133 2.3e-009 9.2e-005 # CCGCTAGG CCTAGCGG 90 59 6.8e-003 2.7e+002 letter-probability matrix: alength= 4 w= 8 nsites= 338 E= 4.5e-006 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.733728 0.000000 0.266272 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF AAATAY DREME-25 # Word RC Word Pos Neg P-value E-value # BEST AAATAY RTATTT 401 248 8.2e-010 3.3e-005 # AAATAC GTATTT 222 137 4.0e-006 1.6e-001 # AAATAT ATATTT 187 113 1.1e-005 4.3e-001 letter-probability matrix: alength= 4 w= 6 nsites= 413 E= 3.3e-005 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.544794 0.000000 0.455206 MOTIF GTGASAAC DREME-26 # Word RC Word Pos Neg P-value E-value # BEST GTGASAAC GTTSTCAC 158 69 1.5e-009 6.1e-005 # GTGACAAC GTTGTCAC 95 33 1.8e-008 7.3e-004 # GTGAGAAC GTTCTCAC 63 36 4.3e-003 1.7e+002 letter-probability matrix: alength= 4 w= 8 nsites= 159 E= 6.1e-005 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.597484 0.402516 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CTGCCMTC DREME-27 # Word RC Word Pos Neg P-value E-value # BEST CTGCCMTC GAKGGCAG 568 396 1.3e-008 5.0e-004 # CTGCCCTC GAGGGCAG 400 295 3.5e-005 1.4e+000 # CTGCCATC GATGGCAG 170 104 3.8e-005 1.5e+000 letter-probability matrix: alength= 4 w= 8 nsites= 576 E= 5.0e-004 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.298611 0.701389 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 MOTIF GAAGGTGR DREME-28 # Word RC Word Pos Neg P-value E-value # BEST GAAGGTGR YCACCTTC 250 141 1.7e-008 6.9e-004 # GAAGGTGA TCACCTTC 117 60 1.1e-005 4.2e-001 # GAAGGTGG CCACCTTC 134 81 1.8e-004 7.1e+000 letter-probability matrix: alength= 4 w= 8 nsites= 253 E= 6.9e-004 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.462451 0.000000 0.537549 0.000000 MOTIF CAGCBTCC DREME-29 # Word RC Word Pos Neg P-value E-value # BEST CAGCBTCC GGAVGCTG 617 443 3.8e-008 1.5e-003 # CAGCCTCC GGAGGCTG 408 313 2.1e-004 8.3e+000 # CAGCGTCC GGACGCTG 104 63 9.2e-004 3.7e+001 # CAGCTTCC GGAAGCTG 106 67 1.8e-003 7.3e+001 letter-probability matrix: alength= 4 w= 8 nsites= 621 E= 1.5e-003 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.661836 0.167472 0.170692 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CGCCCCCA DREME-30 # Word RC Word Pos Neg P-value E-value # BEST CGCCCCCA TGGGGGCG 88 30 4.1e-008 1.6e-003 # CGCCCCCA TGGGGGCG 88 30 4.1e-008 1.6e-003 letter-probability matrix: alength= 4 w= 8 nsites= 88 E= 1.6e-003 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AGACATTK DREME-31 # Word RC Word Pos Neg P-value E-value # BEST AGACATTK MAATGTCT 139 64 7.1e-008 2.8e-003 # AGACATTG CAATGTCT 108 51 3.5e-006 1.4e-001 # AGACATTT AAATGTCT 32 13 3.3e-003 1.3e+002 letter-probability matrix: alength= 4 w= 8 nsites= 141 E= 2.8e-003 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.773050 0.226950 MOTIF GGCSGGGA DREME-32 # Word RC Word Pos Neg P-value E-value # BEST GGCSGGGA TCCCSGCC 255 150 9.2e-008 3.6e-003 # GGCCGGGA TCCCGGCC 142 80 1.8e-005 7.3e-001 # GGCGGGGA TCCCCGCC 114 70 7.1e-004 2.8e+001 letter-probability matrix: alength= 4 w= 8 nsites= 256 E= 3.6e-003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.554688 0.445312 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CAGMAGAG DREME-33 # Word RC Word Pos Neg P-value E-value # BEST CAGMAGAG CTCTKCTG 564 406 1.7e-007 6.8e-003 # CAGCAGAG CTCTGCTG 344 233 1.9e-006 7.7e-002 # CAGAAGAG CTCTTCTG 223 175 9.0e-003 3.6e+002 letter-probability matrix: alength= 4 w= 8 nsites= 570 E= 6.8e-003 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.391228 0.608772 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF GGCCTCTA DREME-34 # Word RC Word Pos Neg P-value E-value # BEST GGCCTCTA TAGAGGCC 114 49 1.8e-007 7.2e-003 # GGCCTCTA TAGAGGCC 114 49 1.8e-007 7.2e-003 letter-probability matrix: alength= 4 w= 8 nsites= 114 E= 7.2e-003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GGAAGCCA DREME-35 # Word RC Word Pos Neg P-value E-value # BEST GGAAGCCA TGGCTTCC 107 45 2.6e-007 1.0e-002 # GGAAGCCA TGGCTTCC 107 45 2.6e-007 1.0e-002 letter-probability matrix: alength= 4 w= 8 nsites= 107 E= 1.0e-002 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF ATGTGGY DREME-36 # Word RC Word Pos Neg P-value E-value # BEST ATGTGGY RCCACAT 574 421 5.5e-007 2.2e-002 # ATGTGGT ACCACAT 236 159 5.9e-005 2.3e+000 # ATGTGGC GCCACAT 341 263 8.0e-004 3.2e+001 letter-probability matrix: alength= 4 w= 7 nsites= 583 E= 2.2e-002 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.590051 0.000000 0.409949 MOTIF AGCGCCYC DREME-37 # Word RC Word Pos Neg P-value E-value # BEST AGCGCCYC GRGGCGCT 261 162 7.8e-007 3.1e-002 # AGCGCCCC GGGGCGCT 164 103 1.1e-004 4.3e+000 # AGCGCCTC GAGGCGCT 98 60 1.5e-003 6.1e+001 letter-probability matrix: alength= 4 w= 8 nsites= 263 E= 3.1e-002 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.623574 0.000000 0.376426 0.000000 1.000000 0.000000 0.000000 MOTIF KTTTAAA DREME-38 # Word RC Word Pos Neg P-value E-value # BEST KTTTAAA TTTAAAM 265 166 9.7e-007 3.8e-002 # TTTTAAA TTTAAAA 170 101 1.6e-005 6.2e-001 # GTTTAAA TTTAAAC 131 82 4.7e-004 1.9e+001 letter-probability matrix: alength= 4 w= 7 nsites= 267 E= 3.8e-002 0.000000 0.000000 0.430712 0.569288 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 4385.61 seconds