Invoking:
  getsize intersect_memechip_out/idr.intersect.fa 1> $metrics
Finished invoke:
  name: count_seqs  status: 0  time: 0.151705
Invoking:
  fasta-most -min 50 < intersect_memechip_out/idr.intersect.fa 1> $metrics
Finished invoke:
  name: most_seqs  status: 0  time: 0.335832
Invoking:
  fasta-center -dna -len 100 < intersect_memechip_out/idr.intersect.fa 1> intersect_memechip_out/seqs-centered
Finished invoke:
  name: center_seqs  status: 0  time: 0.434497
Invoking:
  fasta-shuffle-letters intersect_memechip_out/seqs-centered intersect_memechip_out/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1
Finished invoke:
  name: shuffle_seqs  status: 0  time: 0.270544
Invoking:
  fasta-subsample intersect_memechip_out/seqs-centered 600 -rest intersect_memechip_out/seqs-discarded -seed 1 1> intersect_memechip_out/seqs-sampled
Finished invoke:
  name: sample_seqs  status: 0  time: 0.397891
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 1 intersect_memechip_out/idr.intersect.fa intersect_memechip_out/background
Finished invoke:
  name: bg  status: 0  time: 0.071708
Invoking:
  meme intersect_memechip_out/seqs-sampled -oc intersect_memechip_out/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile intersect_memechip_out/background -dna -revcomp -nostatus
Finished invoke:
  name: meme  status: 0  time: 644.058921
Invoking:
  dreme -v 1 -oc intersect_memechip_out/dreme_out -png -dna -p intersect_memechip_out/seqs-centered -n intersect_memechip_out/seqs-shuffled
Finished invoke:
  name: dreme  status: 0  time: 4513.953048
Invoking:
  centrimo -seqlen 220 -verbosity 1 -oc intersect_memechip_out/centrimo_out -bfile intersect_memechip_out/background intersect_memechip_out/idr.intersect.fa intersect_memechip_out/meme_out/meme.xml intersect_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: centrimo  status: 0  time: 4.62036
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 intersect_memechip_out/combined.meme intersect_memechip_out/combined.meme 1> intersect_memechip_out/motif_alignment.txt
Finished invoke:
  name: align  status: 0  time: 0.294413
Invoking:
  spamo -verbosity 1 -oc intersect_memechip_out/spamo_out_1 -bgfile intersect_memechip_out/background -primary YNRCCASYAGRKGGCRSY intersect_memechip_out/idr.intersect.fa intersect_memechip_out/meme_out/meme.xml intersect_memechip_out/meme_out/meme.xml intersect_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo1  status: 0  time: 0.702898
Invoking:
  spamo -verbosity 1 -oc intersect_memechip_out/spamo_out_2 -bgfile intersect_memechip_out/background -primary KGTGGY intersect_memechip_out/idr.intersect.fa intersect_memechip_out/dreme_out/dreme.xml intersect_memechip_out/meme_out/meme.xml intersect_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo2  status: 0  time: 0.535283
Invoking:
  spamo -verbosity 1 -oc intersect_memechip_out/spamo_out_3 -bgfile intersect_memechip_out/background -primary GCGCCBCC intersect_memechip_out/idr.intersect.fa intersect_memechip_out/dreme_out/dreme.xml intersect_memechip_out/meme_out/meme.xml intersect_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo3  status: 0  time: 0.45919
Invoking:
  spamo -verbosity 1 -oc intersect_memechip_out/spamo_out_4 -bgfile intersect_memechip_out/background -primary GGGCAGYA intersect_memechip_out/idr.intersect.fa intersect_memechip_out/dreme_out/dreme.xml intersect_memechip_out/meme_out/meme.xml intersect_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo4  status: 0  time: 0.571767
Invoking:
  spamo -verbosity 1 -oc intersect_memechip_out/spamo_out_5 -bgfile intersect_memechip_out/background -primary ACAGYGVC intersect_memechip_out/idr.intersect.fa intersect_memechip_out/dreme_out/dreme.xml intersect_memechip_out/meme_out/meme.xml intersect_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo5  status: 0  time: 0.471674
Invoking:
  spamo -verbosity 1 -oc intersect_memechip_out/spamo_out_6 -bgfile intersect_memechip_out/background -primary DTTTCY intersect_memechip_out/idr.intersect.fa intersect_memechip_out/dreme_out/dreme.xml intersect_memechip_out/meme_out/meme.xml intersect_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo6  status: 0  time: 0.455717
Invoking:
  spamo -verbosity 1 -oc intersect_memechip_out/spamo_out_7 -bgfile intersect_memechip_out/background -primary CTGYAG intersect_memechip_out/idr.intersect.fa intersect_memechip_out/dreme_out/dreme.xml intersect_memechip_out/meme_out/meme.xml intersect_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo7  status: 0  time: 0.481546
Invoking:
  spamo -verbosity 1 -oc intersect_memechip_out/spamo_out_8 -bgfile intersect_memechip_out/background -primary GTGGWA intersect_memechip_out/idr.intersect.fa intersect_memechip_out/dreme_out/dreme.xml intersect_memechip_out/meme_out/meme.xml intersect_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo8  status: 0  time: 0.461479
Invoking:
  spamo -verbosity 1 -oc intersect_memechip_out/spamo_out_9 -bgfile intersect_memechip_out/background -primary KHACTGCA intersect_memechip_out/idr.intersect.fa intersect_memechip_out/dreme_out/dreme.xml intersect_memechip_out/meme_out/meme.xml intersect_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo9  status: 0  time: 0.496403
Invoking:
  spamo -verbosity 1 -oc intersect_memechip_out/spamo_out_10 -bgfile intersect_memechip_out/background -primary ATTHY intersect_memechip_out/idr.intersect.fa intersect_memechip_out/dreme_out/dreme.xml intersect_memechip_out/meme_out/meme.xml intersect_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo10  status: 0  time: 0.523904
Invoking:
  spamo -verbosity 1 -oc intersect_memechip_out/spamo_out_11 -bgfile intersect_memechip_out/background -primary CKBCCTCC intersect_memechip_out/idr.intersect.fa intersect_memechip_out/dreme_out/dreme.xml intersect_memechip_out/meme_out/meme.xml intersect_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo11  status: 0  time: 0.481382
Invoking:
  spamo -verbosity 1 -oc intersect_memechip_out/spamo_out_12 -bgfile intersect_memechip_out/background -primary RGRAA intersect_memechip_out/idr.intersect.fa intersect_memechip_out/dreme_out/dreme.xml intersect_memechip_out/meme_out/meme.xml intersect_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo12  status: 0  time: 0.571112
Invoking:
  spamo -verbosity 1 -oc intersect_memechip_out/spamo_out_13 -bgfile intersect_memechip_out/background -primary RGWGACA intersect_memechip_out/idr.intersect.fa intersect_memechip_out/dreme_out/dreme.xml intersect_memechip_out/meme_out/meme.xml intersect_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo13  status: 0  time: 0.535681
Invoking:
  spamo -verbosity 1 -oc intersect_memechip_out/spamo_out_14 -bgfile intersect_memechip_out/background -primary GGACRC intersect_memechip_out/idr.intersect.fa intersect_memechip_out/dreme_out/dreme.xml intersect_memechip_out/meme_out/meme.xml intersect_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo14  status: 0  time: 0.491055
Invoking:
  spamo -verbosity 1 -oc intersect_memechip_out/spamo_out_15 -bgfile intersect_memechip_out/background -primary GYGGCCGY intersect_memechip_out/idr.intersect.fa intersect_memechip_out/dreme_out/dreme.xml intersect_memechip_out/meme_out/meme.xml intersect_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo15  status: 0  time: 0.556335
Invoking:
  spamo -verbosity 1 -oc intersect_memechip_out/spamo_out_16 -bgfile intersect_memechip_out/background -primary AAAMAAAA intersect_memechip_out/idr.intersect.fa intersect_memechip_out/dreme_out/dreme.xml intersect_memechip_out/meme_out/meme.xml intersect_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo16  status: 0  time: 0.504705
Invoking:
  spamo -verbosity 1 -oc intersect_memechip_out/spamo_out_17 -bgfile intersect_memechip_out/background -primary AAATRY intersect_memechip_out/idr.intersect.fa intersect_memechip_out/dreme_out/dreme.xml intersect_memechip_out/meme_out/meme.xml intersect_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo17  status: 0  time: 0.4751
Invoking:
  spamo -verbosity 1 -oc intersect_memechip_out/spamo_out_18 -bgfile intersect_memechip_out/background -primary GAYATTGC intersect_memechip_out/idr.intersect.fa intersect_memechip_out/dreme_out/dreme.xml intersect_memechip_out/meme_out/meme.xml intersect_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo18  status: 0  time: 0.49944
Invoking:
  spamo -verbosity 1 -oc intersect_memechip_out/spamo_out_19 -bgfile intersect_memechip_out/background -primary CAGCVTC intersect_memechip_out/idr.intersect.fa intersect_memechip_out/dreme_out/dreme.xml intersect_memechip_out/meme_out/meme.xml intersect_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo19  status: 0  time: 0.57445
Invoking:
  spamo -verbosity 1 -oc intersect_memechip_out/spamo_out_20 -bgfile intersect_memechip_out/background -primary TWTAAAW intersect_memechip_out/idr.intersect.fa intersect_memechip_out/dreme_out/dreme.xml intersect_memechip_out/meme_out/meme.xml intersect_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo20  status: 0  time: 0.527544
Invoking:
  spamo -verbosity 1 -oc intersect_memechip_out/spamo_out_21 -bgfile intersect_memechip_out/background -primary GGGCGGGR intersect_memechip_out/idr.intersect.fa intersect_memechip_out/dreme_out/dreme.xml intersect_memechip_out/meme_out/meme.xml intersect_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo21  status: 0  time: 0.444668
Invoking:
  spamo -verbosity 1 -oc intersect_memechip_out/spamo_out_22 -bgfile intersect_memechip_out/background -primary ACABACAC intersect_memechip_out/idr.intersect.fa intersect_memechip_out/dreme_out/dreme.xml intersect_memechip_out/meme_out/meme.xml intersect_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo22  status: 0  time: 0.472242
Invoking:
  spamo -verbosity 1 -oc intersect_memechip_out/spamo_out_23 -bgfile intersect_memechip_out/background -primary CAGAGAM intersect_memechip_out/idr.intersect.fa intersect_memechip_out/dreme_out/dreme.xml intersect_memechip_out/meme_out/meme.xml intersect_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo23  status: 0  time: 0.471889
Invoking:
  spamo -verbosity 1 -oc intersect_memechip_out/spamo_out_24 -bgfile intersect_memechip_out/background -primary GTAKATAC intersect_memechip_out/idr.intersect.fa intersect_memechip_out/dreme_out/dreme.xml intersect_memechip_out/meme_out/meme.xml intersect_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo24  status: 0  time: 0.524161
Invoking:
  spamo -verbosity 1 -oc intersect_memechip_out/spamo_out_25 -bgfile intersect_memechip_out/background -primary ACGT intersect_memechip_out/idr.intersect.fa intersect_memechip_out/dreme_out/dreme.xml intersect_memechip_out/meme_out/meme.xml intersect_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo25  status: 0  time: 0.522747
Invoking:
  spamo -verbosity 1 -oc intersect_memechip_out/spamo_out_26 -bgfile intersect_memechip_out/background -primary GWAAACA intersect_memechip_out/idr.intersect.fa intersect_memechip_out/dreme_out/dreme.xml intersect_memechip_out/meme_out/meme.xml intersect_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo26  status: 0  time: 0.532338
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc intersect_memechip_out/fimo_out_1 --bgfile intersect_memechip_out/background --motif YNRCCASYAGRKGGCRSY intersect_memechip_out/meme_out/meme.xml intersect_memechip_out/idr.intersect.fa
Finished invoke:
  name: fimo1  status: 0  time: 2.805784
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc intersect_memechip_out/fimo_out_2 --bgfile intersect_memechip_out/background --motif KGTGGY intersect_memechip_out/dreme_out/dreme.xml intersect_memechip_out/idr.intersect.fa
Finished invoke:
  name: fimo2  status: 0  time: 2.158577
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc intersect_memechip_out/fimo_out_3 --bgfile intersect_memechip_out/background --motif GCGCCBCC intersect_memechip_out/dreme_out/dreme.xml intersect_memechip_out/idr.intersect.fa
Finished invoke:
  name: fimo3  status: 0  time: 2.261263
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc intersect_memechip_out/fimo_out_4 --bgfile intersect_memechip_out/background --motif GGGCAGYA intersect_memechip_out/dreme_out/dreme.xml intersect_memechip_out/idr.intersect.fa
Finished invoke:
  name: fimo4  status: 0  time: 2.21441
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc intersect_memechip_out/fimo_out_5 --bgfile intersect_memechip_out/background --motif ACAGYGVC intersect_memechip_out/dreme_out/dreme.xml intersect_memechip_out/idr.intersect.fa
Finished invoke:
  name: fimo5  status: 0  time: 2.245772
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc intersect_memechip_out/fimo_out_6 --bgfile intersect_memechip_out/background --motif DTTTCY intersect_memechip_out/dreme_out/dreme.xml intersect_memechip_out/idr.intersect.fa
Finished invoke:
  name: fimo6  status: 0  time: 2.626082
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc intersect_memechip_out/fimo_out_7 --bgfile intersect_memechip_out/background --motif CTGYAG intersect_memechip_out/dreme_out/dreme.xml intersect_memechip_out/idr.intersect.fa
Finished invoke:
  name: fimo7  status: 0  time: 2.191865
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc intersect_memechip_out/fimo_out_8 --bgfile intersect_memechip_out/background --motif GTGGWA intersect_memechip_out/dreme_out/dreme.xml intersect_memechip_out/idr.intersect.fa
Finished invoke:
  name: fimo8  status: 0  time: 2.089704
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc intersect_memechip_out/fimo_out_9 --bgfile intersect_memechip_out/background --motif KHACTGCA intersect_memechip_out/dreme_out/dreme.xml intersect_memechip_out/idr.intersect.fa
Finished invoke:
  name: fimo9  status: 0  time: 2.314347
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc intersect_memechip_out/fimo_out_10 --bgfile intersect_memechip_out/background --motif ATTHY intersect_memechip_out/dreme_out/dreme.xml intersect_memechip_out/idr.intersect.fa
Finished invoke:
  name: fimo10  status: 0  time: 2.385053
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc intersect_memechip_out/fimo_out_11 --bgfile intersect_memechip_out/background --motif CKBCCTCC intersect_memechip_out/dreme_out/dreme.xml intersect_memechip_out/idr.intersect.fa
Finished invoke:
  name: fimo11  status: 0  time: 2.327367
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc intersect_memechip_out/fimo_out_12 --bgfile intersect_memechip_out/background --motif RGRAA intersect_memechip_out/dreme_out/dreme.xml intersect_memechip_out/idr.intersect.fa
Finished invoke:
  name: fimo12  status: 0  time: 2.066406
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc intersect_memechip_out/fimo_out_13 --bgfile intersect_memechip_out/background --motif RGWGACA intersect_memechip_out/dreme_out/dreme.xml intersect_memechip_out/idr.intersect.fa
Finished invoke:
  name: fimo13  status: 0  time: 2.371779
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc intersect_memechip_out/fimo_out_14 --bgfile intersect_memechip_out/background --motif GGACRC intersect_memechip_out/dreme_out/dreme.xml intersect_memechip_out/idr.intersect.fa
Finished invoke:
  name: fimo14  status: 0  time: 2.10682
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc intersect_memechip_out/fimo_out_15 --bgfile intersect_memechip_out/background --motif GYGGCCGY intersect_memechip_out/dreme_out/dreme.xml intersect_memechip_out/idr.intersect.fa
Finished invoke:
  name: fimo15  status: 0  time: 2.254151
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc intersect_memechip_out/fimo_out_16 --bgfile intersect_memechip_out/background --motif AAAMAAAA intersect_memechip_out/dreme_out/dreme.xml intersect_memechip_out/idr.intersect.fa
Finished invoke:
  name: fimo16  status: 0  time: 2.415232
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc intersect_memechip_out/fimo_out_17 --bgfile intersect_memechip_out/background --motif AAATRY intersect_memechip_out/dreme_out/dreme.xml intersect_memechip_out/idr.intersect.fa
Finished invoke:
  name: fimo17  status: 0  time: 2.358654
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc intersect_memechip_out/fimo_out_18 --bgfile intersect_memechip_out/background --motif GAYATTGC intersect_memechip_out/dreme_out/dreme.xml intersect_memechip_out/idr.intersect.fa
Finished invoke:
  name: fimo18  status: 0  time: 2.880504
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc intersect_memechip_out/fimo_out_19 --bgfile intersect_memechip_out/background --motif CAGCVTC intersect_memechip_out/dreme_out/dreme.xml intersect_memechip_out/idr.intersect.fa
Finished invoke:
  name: fimo19  status: 0  time: 2.716134
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc intersect_memechip_out/fimo_out_20 --bgfile intersect_memechip_out/background --motif TWTAAAW intersect_memechip_out/dreme_out/dreme.xml intersect_memechip_out/idr.intersect.fa
Finished invoke:
  name: fimo20  status: 0  time: 2.248061
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc intersect_memechip_out/fimo_out_21 --bgfile intersect_memechip_out/background --motif GGGCGGGR intersect_memechip_out/dreme_out/dreme.xml intersect_memechip_out/idr.intersect.fa
Finished invoke:
  name: fimo21  status: 0  time: 2.1516
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc intersect_memechip_out/fimo_out_22 --bgfile intersect_memechip_out/background --motif ACABACAC intersect_memechip_out/dreme_out/dreme.xml intersect_memechip_out/idr.intersect.fa
Finished invoke:
  name: fimo22  status: 0  time: 2.185843
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc intersect_memechip_out/fimo_out_23 --bgfile intersect_memechip_out/background --motif CAGAGAM intersect_memechip_out/dreme_out/dreme.xml intersect_memechip_out/idr.intersect.fa
Finished invoke:
  name: fimo23  status: 0  time: 2.290216
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc intersect_memechip_out/fimo_out_24 --bgfile intersect_memechip_out/background --motif GTAKATAC intersect_memechip_out/dreme_out/dreme.xml intersect_memechip_out/idr.intersect.fa
Finished invoke:
  name: fimo24  status: 0  time: 2.165467
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc intersect_memechip_out/fimo_out_25 --bgfile intersect_memechip_out/background --motif ACGT intersect_memechip_out/dreme_out/dreme.xml intersect_memechip_out/idr.intersect.fa
Finished invoke:
  name: fimo25  status: 0  time: 2.093504
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc intersect_memechip_out/fimo_out_26 --bgfile intersect_memechip_out/background --motif GWAAACA intersect_memechip_out/dreme_out/dreme.xml intersect_memechip_out/idr.intersect.fa
Finished invoke:
  name: fimo26  status: 0  time: 2.250601
Writing output
Invoking:
  meme-chip_html_to_tsv intersect_memechip_out/meme-chip.html intersect_memechip_out/summary.tsv
Finished invoke:
  name: summary  status: 0  time: 0.233814
Done