# DREME 4.12.0 # command: dreme -v 1 -oc intersect_memechip_out/dreme_out -png -dna -p intersect_memechip_out/seqs-centered -n intersect_memechip_out/seqs-shuffled # positives: 29682 from intersect_memechip_out/seqs-centered (Wed Oct 23 16:31:38 PDT 2019) # negatives: 29682 from intersect_memechip_out/seqs-shuffled (Wed Oct 23 16:31:39 PDT 2019) # host: indra.stanford.edu # when: Wed Oct 23 16:42:25 PDT 2019 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.232 C 0.268 G 0.268 T 0.232 MOTIF AGRKGGCR DREME-1 # Word RC Word Pos Neg P-value E-value # BEST AGRKGGCR YGCCMYCT 13496 1284 2.3e-3292 1.1e-3287 # AGGGGGCG CGCCCCCT 2199 138 3.9e-494 1.8e-489 # AGAGGGCA TGCCCTCT 2247 266 4.0e-405 1.9e-400 # AGGTGGCA TGCCACCT 1995 204 2.3e-381 1.1e-376 # AGGGGGCA TGCCCCCT 2251 309 7.9e-378 3.6e-373 # AGAGGGCG CGCCCTCT 1660 136 2.4e-342 1.1e-337 # AGATGGCA TGCCATCT 1480 134 2.9e-294 1.3e-289 # AGGTGGCG CGCCACCT 1304 85 7.5e-287 3.5e-282 # AGATGGCG CGCCATCT 777 36 1.3e-184 5.8e-180 letter-probability matrix: alength= 4 w= 8 nsites= 13982 E= 1.1e-3287 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.442497 0.000000 0.557503 0.000000 0.000000 0.000000 0.601845 0.398155 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.573237 0.000000 0.426763 0.000000 MOTIF CCASYAGR DREME-2 # Word RC Word Pos Neg P-value E-value # BEST CCASYAGR YCTRSTGG 7234 1698 6.8e-937 3.1e-932 # CCACTAGG CCTAGTGG 1341 123 5.8e-265 2.6e-260 # CCACTAGA TCTAGTGG 1143 104 4.6e-226 2.1e-221 # CCACCAGG CCTGGTGG 1543 279 5.5e-218 2.5e-213 # CCAGCAGG CCTGCTGG 1272 492 5.0e-082 2.3e-077 # CCACCAGA TCTGGTGG 691 192 5.4e-068 2.4e-063 # CCAGCAGA TCTGCTGG 743 313 6.7e-042 3.1e-037 # CCAGTAGG CCTACTGG 431 139 2.3e-036 1.1e-031 # CCAGTAGA TCTACTGG 283 93 7.5e-024 3.4e-019 letter-probability matrix: alength= 4 w= 8 nsites= 7502 E= 3.1e-932 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.633831 0.366169 0.000000 0.000000 0.570115 0.000000 0.429885 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.384564 0.000000 0.615436 0.000000 MOTIF DTTTCY DREME-3 # Word RC Word Pos Neg P-value E-value # BEST DTTTCY RGAAAH 10668 7076 6.7e-229 3.0e-224 # ATTTCT AGAAAT 2028 1122 9.0e-063 4.1e-058 # TTTTCT AGAAAA 2992 1883 2.1e-062 9.5e-058 # ATTTCC GGAAAT 1877 1047 1.0e-056 4.7e-052 # TTTTCC GGAAAA 2454 1547 1.9e-050 8.5e-046 # GTTTCT AGAAAC 1940 1306 1.0e-030 4.7e-026 # GTTTCC GGAAAC 1746 1222 2.7e-023 1.2e-018 letter-probability matrix: alength= 4 w= 6 nsites= 13608 E= 3.0e-224 0.296664 0.000000 0.278219 0.425118 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.461934 0.000000 0.538066 MOTIF KGTGGY DREME-4 # Word RC Word Pos Neg P-value E-value # BEST KGTGGY RCCACM 9194 6619 6.0e-127 2.7e-122 # GGTGGC GCCACC 3064 2102 5.1e-045 2.3e-040 # TGTGGT ACCACA 2355 1553 1.1e-040 5.1e-036 # TGTGGC GCCACA 3113 2239 2.4e-036 1.1e-031 # GGTGGT ACCACC 2115 1497 1.2e-026 5.5e-022 letter-probability matrix: alength= 4 w= 6 nsites= 10861 E= 2.7e-122 0.000000 0.000000 0.480987 0.519013 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.586502 0.000000 0.413498 MOTIF AGRKGGAG DREME-5 # Word RC Word Pos Neg P-value E-value # BEST AGRKGGAG CTCCMYCT 2150 913 7.8e-120 3.5e-115 # AGAGGGAG CTCCCTCT 838 299 5.8e-061 2.6e-056 # AGGGGGAG CTCCCCCT 773 315 4.7e-046 2.1e-041 # AGGTGGAG CTCCACCT 363 180 1.2e-015 5.2e-011 # AGATGGAG CTCCATCT 206 132 3.2e-005 1.4e+000 letter-probability matrix: alength= 4 w= 8 nsites= 2195 E= 3.5e-115 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.480638 0.000000 0.519362 0.000000 0.000000 0.000000 0.740774 0.259226 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF ATTHY DREME-6 # Word RC Word Pos Neg P-value E-value # BEST ATTHY RDAAT 14563 12435 3.6e-069 1.6e-064 # ATTTT AAAAT 4928 3851 6.7e-036 2.9e-031 # ATTTC GAAAT 2049 1497 5.9e-022 2.6e-017 # ATTAC GTAAT 2839 2206 6.2e-021 2.8e-016 # ATTCT AGAAT 4675 3932 2.5e-018 1.1e-013 # ATTCC GGAAT 4334 3750 1.5e-012 6.6e-008 # ATTAT ATAAT 2385 2144 1.0e-004 4.6e+000 letter-probability matrix: alength= 4 w= 5 nsites= 22196 E= 1.6e-064 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.234096 0.422824 0.000000 0.343080 0.000000 0.424896 0.000000 0.575104 MOTIF KHACTGCA DREME-7 # Word RC Word Pos Neg P-value E-value # BEST KHACTGCA TGCAGTDM 1405 666 8.6e-063 3.6e-058 # GAACTGCA TGCAGTTC 413 121 6.3e-039 2.7e-034 # GTACTGCA TGCAGTAC 202 62 7.4e-019 3.1e-014 # TCACTGCA TGCAGTGA 289 139 1.4e-013 6.0e-009 # GCACTGCA TGCAGTGC 285 208 2.9e-004 1.2e+001 # TTACTGCA TGCAGTAA 105 62 5.4e-004 2.3e+001 # TAACTGCA TGCAGTTA 143 94 8.6e-004 3.6e+001 letter-probability matrix: alength= 4 w= 8 nsites= 1428 E= 3.6e-058 0.000000 0.000000 0.630252 0.369748 0.387255 0.401261 0.000000 0.211485 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GCGCCBCC DREME-8 # Word RC Word Pos Neg P-value E-value # BEST GCGCCBCC GGVGGCGC 1112 481 2.0e-059 8.3e-055 # GCGCCTCC GGAGGCGC 389 141 2.2e-028 9.4e-024 # GCGCCCCC GGGGGCGC 420 190 2.0e-021 8.4e-017 # GCGCCGCC GGCGGCGC 335 171 1.1e-013 4.5e-009 letter-probability matrix: alength= 4 w= 8 nsites= 1160 E= 8.3e-055 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.368966 0.295690 0.335345 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CKBCCTCC DREME-9 # Word RC Word Pos Neg P-value E-value # BEST CKBCCTCC GGAGGVMG 1906 1113 2.3e-050 9.7e-046 # CTTCCTCC GGAGGAAG 350 161 1.5e-017 6.2e-013 # CTGCCTCC GGAGGCAG 596 367 5.0e-014 2.1e-009 # CGCCCTCC GGAGGGCG 319 158 5.6e-014 2.4e-009 # CTCCCTCC GGAGGGAG 418 275 2.6e-008 1.1e-003 # CGGCCTCC GGAGGCCG 202 136 1.9e-004 7.9e+000 # CGTCCTCC GGAGGACG 90 55 2.3e-003 9.5e+001 letter-probability matrix: alength= 4 w= 8 nsites= 1963 E= 9.7e-046 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.312277 0.687723 0.000000 0.370861 0.406011 0.223128 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF RGRAA DREME-10 # Word RC Word Pos Neg P-value E-value # BEST RGRAA TTYCY 11285 9772 8.5e-039 3.5e-034 # AGGAA TTCCT 4907 4124 1.9e-019 8.1e-015 # GGGAA TTCCC 5025 4236 2.4e-019 1.0e-014 # GGAAA TTTCC 2426 1966 2.9e-013 1.2e-008 # AGAAA TTTCT 2496 2088 1.9e-010 8.0e-006 letter-probability matrix: alength= 4 w= 5 nsites= 14298 E= 3.5e-034 0.521891 0.000000 0.478109 0.000000 0.000000 0.000000 1.000000 0.000000 0.298224 0.000000 0.701776 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CCKCTAGR DREME-11 # Word RC Word Pos Neg P-value E-value # BEST CCKCTAGR YCTAGMGG 652 285 1.4e-034 5.6e-030 # CCGCTAGA TCTAGCGG 120 28 4.2e-015 1.7e-010 # CCTCTAGG CCTAGAGG 287 131 6.9e-015 2.9e-010 # CCGCTAGG CCTAGCGG 149 62 9.0e-010 3.7e-005 # CCTCTAGA TCTAGAGG 100 64 3.0e-003 1.2e+002 letter-probability matrix: alength= 4 w= 8 nsites= 667 E= 5.6e-030 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.416792 0.583208 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.338831 0.000000 0.661169 0.000000 MOTIF MGTGGYCA DREME-12 # Word RC Word Pos Neg P-value E-value # BEST MGTGGYCA TGRCCACK 693 324 2.8e-032 1.1e-027 # AGTGGCCA TGGCCACT 356 145 5.5e-022 2.3e-017 # AGTGGTCA TGACCACT 209 99 1.6e-010 6.4e-006 # CGTGGCCA TGGCCACG 92 54 1.0e-003 4.2e+001 # CGTGGTCA TGACCACG 58 30 1.9e-003 7.7e+001 letter-probability matrix: alength= 4 w= 8 nsites= 699 E= 1.1e-027 0.793991 0.206009 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.618026 0.000000 0.381974 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF ACAGYGVC DREME-13 # Word RC Word Pos Neg P-value E-value # BEST ACAGYGVC GBCRCTGT 870 457 4.6e-031 1.9e-026 # ACAGCGAC GTCGCTGT 140 34 8.1e-017 3.3e-012 # ACAGTGAC GTCACTGT 208 86 3.5e-013 1.5e-008 # ACAGCGCC GGCGCTGT 138 60 1.4e-008 5.8e-004 # ACAGCGGC GCCGCTGT 91 55 1.8e-003 7.4e+001 # ACAGTGCC GGCACTGT 160 118 6.8e-003 2.8e+002 # ACAGTGGC GCCACTGT 143 104 7.6e-003 3.1e+002 letter-probability matrix: alength= 4 w= 8 nsites= 886 E= 1.9e-026 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.418736 0.000000 0.581264 0.000000 0.000000 1.000000 0.000000 0.393905 0.339729 0.266366 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF AAAMAAAA DREME-14 # Word RC Word Pos Neg P-value E-value # BEST AAAMAAAA TTTTKTTT 468 205 3.9e-025 1.6e-020 # AAAAAAAA TTTTTTTT 297 132 4.3e-016 1.7e-011 # AAACAAAA TTTTGTTT 188 74 5.8e-013 2.4e-008 letter-probability matrix: alength= 4 w= 8 nsites= 536 E= 1.6e-020 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.638060 0.361940 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AAATRY DREME-15 # Word RC Word Pos Neg P-value E-value # BEST AAATRY RYATTT 2283 1708 2.2e-021 9.0e-017 # AAATAC GTATTT 508 319 1.9e-011 7.8e-007 # AAATAT ATATTT 462 313 4.0e-008 1.6e-003 # AAATGT ACATTT 704 540 1.5e-006 6.0e-002 # AAATGC GCATTT 728 597 1.5e-004 6.2e+000 letter-probability matrix: alength= 4 w= 6 nsites= 2445 E= 9.0e-017 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.403272 0.000000 0.596728 0.000000 0.000000 0.512474 0.000000 0.487526 MOTIF ACAGCABC DREME-16 # Word RC Word Pos Neg P-value E-value # BEST ACAGCABC GVTGCTGT 691 393 2.6e-020 1.1e-015 # ACAGCACC GGTGCTGT 283 112 1.4e-018 5.6e-014 # ACAGCAGC GCTGCTGT 297 204 1.7e-005 7.1e-001 # ACAGCATC GATGCTGT 117 80 5.0e-003 2.0e+002 letter-probability matrix: alength= 4 w= 8 nsites= 700 E= 1.1e-015 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.407143 0.425714 0.167143 0.000000 1.000000 0.000000 0.000000 MOTIF CACTAGAK DREME-17 # Word RC Word Pos Neg P-value E-value # BEST CACTAGAK MTCTAGTG 244 84 1.2e-019 5.1e-015 # CACTAGAT ATCTAGTG 100 25 3.9e-012 1.6e-007 # CACTAGAG CTCTAGTG 144 59 1.0e-009 4.2e-005 letter-probability matrix: alength= 4 w= 8 nsites= 245 E= 5.1e-015 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.587755 0.412245 MOTIF RGWGACA DREME-18 # Word RC Word Pos Neg P-value E-value # BEST RGWGACA TGTCWCY 2052 1561 1.8e-017 7.4e-013 # AGTGACA TGTCACT 500 320 1.3e-010 5.4e-006 # GGAGACA TGTCTCC 591 433 3.6e-007 1.5e-002 # GGTGACA TGTCACC 442 352 7.3e-004 3.0e+001 # AGAGACA TGTCTCT 567 478 3.0e-003 1.2e+002 letter-probability matrix: alength= 4 w= 7 nsites= 2117 E= 7.4e-013 0.506849 0.000000 0.493151 0.000000 0.000000 0.000000 1.000000 0.000000 0.550307 0.000000 0.000000 0.449693 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GYGGCCGY DREME-19 # Word RC Word Pos Neg P-value E-value # BEST GYGGCCGY RCGGCCRC 372 177 2.1e-017 8.6e-013 # GTGGCCGC GCGGCCAC 105 30 2.8e-011 1.2e-006 # GCGGCCGC GCGGCCGC 173 97 2.1e-006 8.5e-002 # GTGGCCGT ACGGCCAC 34 12 8.2e-004 3.3e+001 # GCGGCCGT ACGGCCGC 70 39 1.9e-003 7.8e+001 letter-probability matrix: alength= 4 w= 8 nsites= 383 E= 8.6e-013 0.000000 0.000000 1.000000 0.000000 0.000000 0.639687 0.000000 0.360313 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.728460 0.000000 0.271540 MOTIF GGACRC DREME-20 # Word RC Word Pos Neg P-value E-value # BEST GGACRC GYGTCC 2376 1861 1.2e-016 4.8e-012 # GGACGC GCGTCC 887 636 3.9e-011 1.6e-006 # GGACAC GTGTCC 1536 1244 7.7e-009 3.1e-004 letter-probability matrix: alength= 4 w= 6 nsites= 2478 E= 4.8e-012 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.630347 0.000000 0.369653 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CTGYAG DREME-21 # Word RC Word Pos Neg P-value E-value # BEST CTGYAG CTRCAG 3429 2880 1.4e-013 5.8e-009 # CTGCAG CTGCAG 2205 1774 8.1e-013 3.3e-008 # CTGTAG CTACAG 1309 1171 2.5e-003 1.0e+002 letter-probability matrix: alength= 4 w= 6 nsites= 3662 E= 5.8e-009 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.633534 0.000000 0.366466 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF CGCCKCC DREME-22 # Word RC Word Pos Neg P-value E-value # BEST CGCCKCC GGMGGCG 730 498 1.2e-011 4.8e-007 # CGCCTCC GGAGGCG 395 265 2.0e-007 8.3e-003 # CGCCGCC GGCGGCG 366 260 1.2e-005 4.8e-001 letter-probability matrix: alength= 4 w= 7 nsites= 765 E= 4.8e-007 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.478431 0.521569 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF TWTAAAW DREME-23 # Word RC Word Pos Neg P-value E-value # BEST TWTAAAW WTTTAWA 790 550 1.8e-011 7.2e-007 # TTTAAAA TTTTAAA 326 230 2.5e-005 1.0e+000 # TATAAAA TTTTATA 191 122 5.5e-005 2.2e+000 # TATAAAT ATTTATA 145 94 5.7e-004 2.3e+001 # TTTAAAT ATTTAAA 212 164 7.5e-003 3.0e+002 letter-probability matrix: alength= 4 w= 7 nsites= 810 E= 7.2e-007 0.000000 0.000000 0.000000 1.000000 0.409877 0.000000 0.000000 0.590123 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.603704 0.000000 0.000000 0.396296 MOTIF GGGCAGYA DREME-24 # Word RC Word Pos Neg P-value E-value # BEST GGGCAGYA TRCTGCCC 578 378 3.7e-011 1.5e-006 # GGGCAGCA TGCTGCCC 456 296 2.4e-009 9.6e-005 # GGGCAGTA TACTGCCC 122 82 3.0e-003 1.2e+002 letter-probability matrix: alength= 4 w= 8 nsites= 581 E= 1.5e-006 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.790017 0.000000 0.209983 1.000000 0.000000 0.000000 0.000000 MOTIF GGGCGGGR DREME-25 # Word RC Word Pos Neg P-value E-value # BEST GGGCGGGR YCCCGCCC 419 268 3.8e-009 1.5e-004 # GGGCGGGG CCCCGCCC 325 207 1.6e-007 6.3e-003 # GGGCGGGA TCCCGCCC 100 62 1.7e-003 7.0e+001 letter-probability matrix: alength= 4 w= 8 nsites= 438 E= 1.5e-004 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.226027 0.000000 0.773973 0.000000 MOTIF ACABACAC DREME-26 # Word RC Word Pos Neg P-value E-value # BEST ACABACAC GTGTVTGT 313 187 8.4e-009 3.4e-004 # ACAGACAC GTGTCTGT 124 72 1.2e-004 4.9e+000 # ACACACAC GTGTGTGT 137 87 5.0e-004 2.0e+001 # ACATACAC GTGTATGT 55 32 8.9e-003 3.6e+002 letter-probability matrix: alength= 4 w= 8 nsites= 348 E= 3.4e-004 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.479885 0.362069 0.158046 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CCGCCAGR DREME-27 # Word RC Word Pos Neg P-value E-value # BEST CCGCCAGR YCTGGCGG 324 196 9.5e-009 3.8e-004 # CCGCCAGG CCTGGCGG 238 142 4.5e-007 1.8e-002 # CCGCCAGA TCTGGCGG 87 54 3.4e-003 1.4e+002 letter-probability matrix: alength= 4 w= 8 nsites= 326 E= 3.8e-004 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.266871 0.000000 0.733129 0.000000 MOTIF CAGAGAM DREME-28 # Word RC Word Pos Neg P-value E-value # BEST CAGAGAM KTCTCTG 780 583 3.7e-008 1.5e-003 # CAGAGAA TTCTCTG 395 277 2.7e-006 1.1e-001 # CAGAGAC GTCTCTG 393 312 1.2e-003 4.9e+001 letter-probability matrix: alength= 4 w= 7 nsites= 789 E= 1.5e-003 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500634 0.499366 0.000000 0.000000 MOTIF GTGGWA DREME-29 # Word RC Word Pos Neg P-value E-value # BEST GTGGWA TWCCAC 1240 991 4.2e-008 1.7e-003 # GTGGAA TTCCAC 871 720 6.8e-005 2.8e+000 # GTGGTA TACCAC 375 282 1.5e-004 6.1e+000 letter-probability matrix: alength= 4 w= 6 nsites= 1270 E= 1.7e-003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.701575 0.000000 0.000000 0.298425 1.000000 0.000000 0.000000 0.000000 MOTIF GTGGCWGA DREME-30 # Word RC Word Pos Neg P-value E-value # BEST GTGGCWGA TCWGCCAC 171 86 5.9e-008 2.4e-003 # GTGGCTGA TCAGCCAC 92 41 5.6e-006 2.3e-001 # GTGGCAGA TCTGCCAC 79 45 1.4e-003 5.8e+001 letter-probability matrix: alength= 4 w= 8 nsites= 171 E= 2.4e-003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.461988 0.000000 0.000000 0.538012 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF ATAAATRA DREME-31 # Word RC Word Pos Neg P-value E-value # BEST ATAAATRA TYATTTAT 123 53 6.6e-008 2.6e-003 # ATAAATGA TCATTTAT 70 28 1.3e-005 5.2e-001 # ATAAATAA TTATTTAT 56 26 6.1e-004 2.4e+001 letter-probability matrix: alength= 4 w= 8 nsites= 126 E= 2.6e-003 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.452381 0.000000 0.547619 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AAACTRCA DREME-32 # Word RC Word Pos Neg P-value E-value # BEST AAACTRCA TGYAGTTT 206 112 7.0e-008 2.8e-003 # AAACTGCA TGCAGTTT 142 81 2.6e-005 1.0e+000 # AAACTACA TGTAGTTT 65 32 5.2e-004 2.1e+001 letter-probability matrix: alength= 4 w= 8 nsites= 207 E= 2.8e-003 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.314010 0.000000 0.685990 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CAGCVTC DREME-33 # Word RC Word Pos Neg P-value E-value # BEST CAGCVTC GABGCTG 1561 1296 2.0e-007 8.2e-003 # CAGCATC GATGCTG 442 341 1.6e-004 6.4e+000 # CAGCCTC GAGGCTG 981 848 8.6e-004 3.4e+001 # CAGCGTC GACGCTG 163 121 7.3e-003 2.9e+002 letter-probability matrix: alength= 4 w= 7 nsites= 1610 E= 8.2e-003 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.276398 0.622360 0.101242 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 MOTIF ACGT DREME-34 # Word RC Word Pos Neg P-value E-value # BEST ACGT ACGT 2066 1775 6.5e-007 2.6e-002 # ACGT ACGT 2066 1775 6.5e-007 2.6e-002 letter-probability matrix: alength= 4 w= 4 nsites= 2168 E= 2.6e-002 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 MOTIF GTAKATAC DREME-35 # Word RC Word Pos Neg P-value E-value # BEST GTAKATAC GTATMTAC 50 12 6.0e-007 2.4e-002 # GTATATAC GTATATAC 23 2 9.7e-006 3.8e-001 # GTAGATAC GTATCTAC 27 10 3.8e-003 1.5e+002 letter-probability matrix: alength= 4 w= 8 nsites= 50 E= 2.4e-002 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.540000 0.460000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF GWAAACA DREME-36 # Word RC Word Pos Neg P-value E-value # BEST GWAAACA TGTTTWC 473 336 7.0e-007 2.8e-002 # GAAAACA TGTTTTC 223 145 2.7e-005 1.1e+000 # GTAAACA TGTTTAC 252 192 2.4e-003 9.6e+001 letter-probability matrix: alength= 4 w= 7 nsites= 475 E= 2.8e-002 0.000000 0.000000 1.000000 0.000000 0.469474 0.000000 0.000000 0.530526 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AGAKGGTG DREME-37 # Word RC Word Pos Neg P-value E-value # BEST AGAKGGTG CACCMTCT 335 221 6.8e-007 2.7e-002 # AGAGGGTG CACCCTCT 222 151 1.3e-004 5.3e+000 # AGATGGTG CACCATCT 113 70 9.0e-004 3.5e+001 letter-probability matrix: alength= 4 w= 8 nsites= 337 E= 2.7e-002 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.664688 0.335312 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 MOTIF GAYATTGC DREME-38 # Word RC Word Pos Neg P-value E-value # BEST GAYATTGC GCAATRTC 173 94 7.3e-007 2.9e-002 # GACATTGC GCAATGTC 102 53 5.0e-005 2.0e+000 # GATATTGC GCAATATC 71 41 2.9e-003 1.2e+002 letter-probability matrix: alength= 4 w= 8 nsites= 173 E= 2.9e-002 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.589595 0.000000 0.410405 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 4513.19 seconds