Invoking: getsize cutnotseq_memechip_out/idr.cutnotseq.fa 1> $metrics Finished invoke: name: count_seqs status: 0 time: 0.107167 Invoking: fasta-most -min 50 < cutnotseq_memechip_out/idr.cutnotseq.fa 1> $metrics Finished invoke: name: most_seqs status: 0 time: 0.305124 Invoking: fasta-center -dna -len 100 < cutnotseq_memechip_out/idr.cutnotseq.fa 1> cutnotseq_memechip_out/seqs-centered Finished invoke: name: center_seqs status: 0 time: 0.281837 Invoking: fasta-shuffle-letters cutnotseq_memechip_out/seqs-centered cutnotseq_memechip_out/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1 Finished invoke: name: shuffle_seqs status: 0 time: 0.04733 Invoking: fasta-subsample cutnotseq_memechip_out/seqs-centered 600 -rest cutnotseq_memechip_out/seqs-discarded -seed 1 1> cutnotseq_memechip_out/seqs-sampled Finished invoke: name: sample_seqs status: 0 time: 0.11937 Invoking: fasta-get-markov -nostatus -nosummary -dna -m 1 cutnotseq_memechip_out/idr.cutnotseq.fa cutnotseq_memechip_out/background Finished invoke: name: bg status: 0 time: 0.043608 Invoking: meme cutnotseq_memechip_out/seqs-sampled -oc cutnotseq_memechip_out/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile cutnotseq_memechip_out/background -dna -revcomp -nostatus Finished invoke: name: meme status: 0 time: 860.673651 Invoking: dreme -v 1 -oc cutnotseq_memechip_out/dreme_out -png -dna -p cutnotseq_memechip_out/seqs-centered -n cutnotseq_memechip_out/seqs-shuffled Finished invoke: name: dreme status: 0 time: 826.923018 Invoking: centrimo -seqlen 243 -verbosity 1 -oc cutnotseq_memechip_out/centrimo_out -bfile cutnotseq_memechip_out/background cutnotseq_memechip_out/idr.cutnotseq.fa cutnotseq_memechip_out/meme_out/meme.xml cutnotseq_memechip_out/dreme_out/dreme.xml Finished invoke: name: centrimo status: 0 time: 0.451645 Invoking: tomtom -verbosity 1 -text -thresh 0.1 cutnotseq_memechip_out/combined.meme cutnotseq_memechip_out/combined.meme 1> cutnotseq_memechip_out/motif_alignment.txt Finished invoke: name: align status: 0 time: 1.060438 Invoking: spamo -verbosity 1 -oc cutnotseq_memechip_out/spamo_out_1 -bgfile cutnotseq_memechip_out/background -primary GGRGGMGGGGSYKSGGGSRGG cutnotseq_memechip_out/idr.cutnotseq.fa cutnotseq_memechip_out/meme_out/meme.xml cutnotseq_memechip_out/meme_out/meme.xml cutnotseq_memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo1 status: 0 time: 5.059277 Invoking: spamo -verbosity 1 -oc cutnotseq_memechip_out/spamo_out_2 -bgfile cutnotseq_memechip_out/background -primary WTWRWTWTTTTTTTTTTWTWWWTTWWWWTW cutnotseq_memechip_out/idr.cutnotseq.fa cutnotseq_memechip_out/meme_out/meme.xml cutnotseq_memechip_out/meme_out/meme.xml cutnotseq_memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo2 status: 0 time: 4.252546 Invoking: spamo -verbosity 1 -oc cutnotseq_memechip_out/spamo_out_3 -bgfile cutnotseq_memechip_out/background -primary CCACYAGR cutnotseq_memechip_out/idr.cutnotseq.fa cutnotseq_memechip_out/dreme_out/dreme.xml cutnotseq_memechip_out/meme_out/meme.xml cutnotseq_memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo3 status: 0 time: 3.142705 Invoking: spamo -verbosity 1 -oc cutnotseq_memechip_out/spamo_out_4 -bgfile cutnotseq_memechip_out/background -primary DTTTCY cutnotseq_memechip_out/idr.cutnotseq.fa cutnotseq_memechip_out/dreme_out/dreme.xml cutnotseq_memechip_out/meme_out/meme.xml cutnotseq_memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo4 status: 0 time: 8.962226 Invoking: spamo -verbosity 1 -oc cutnotseq_memechip_out/spamo_out_5 -bgfile cutnotseq_memechip_out/background -primary CCTGTAATCCCAGCDWCTBRGRAGRCTSMS cutnotseq_memechip_out/idr.cutnotseq.fa cutnotseq_memechip_out/meme_out/meme.xml cutnotseq_memechip_out/meme_out/meme.xml cutnotseq_memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo5 status: 0 time: 1.360018 Invoking: spamo -verbosity 1 -oc cutnotseq_memechip_out/spamo_out_6 -bgfile cutnotseq_memechip_out/background -primary CWGKAA cutnotseq_memechip_out/idr.cutnotseq.fa cutnotseq_memechip_out/dreme_out/dreme.xml cutnotseq_memechip_out/meme_out/meme.xml cutnotseq_memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo6 status: 0 time: 8.595449 Invoking: spamo -verbosity 1 -oc cutnotseq_memechip_out/spamo_out_7 -bgfile cutnotseq_memechip_out/background -primary AAATRM cutnotseq_memechip_out/idr.cutnotseq.fa cutnotseq_memechip_out/dreme_out/dreme.xml cutnotseq_memechip_out/meme_out/meme.xml cutnotseq_memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo7 status: 0 time: 6.85523 Invoking: spamo -verbosity 1 -oc cutnotseq_memechip_out/spamo_out_8 -bgfile cutnotseq_memechip_out/background -primary CASCWGG cutnotseq_memechip_out/idr.cutnotseq.fa cutnotseq_memechip_out/dreme_out/dreme.xml cutnotseq_memechip_out/meme_out/meme.xml cutnotseq_memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo8 status: 0 time: 4.681351 Invoking: spamo -verbosity 1 -oc cutnotseq_memechip_out/spamo_out_9 -bgfile cutnotseq_memechip_out/background -primary CAKCCTGG cutnotseq_memechip_out/idr.cutnotseq.fa cutnotseq_memechip_out/dreme_out/dreme.xml cutnotseq_memechip_out/meme_out/meme.xml cutnotseq_memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo9 status: 0 time: 1.936566 Invoking: spamo -verbosity 1 -oc cutnotseq_memechip_out/spamo_out_10 -bgfile cutnotseq_memechip_out/background -primary STGGGA cutnotseq_memechip_out/idr.cutnotseq.fa cutnotseq_memechip_out/dreme_out/dreme.xml cutnotseq_memechip_out/meme_out/meme.xml cutnotseq_memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo10 status: 0 time: 7.171141 Invoking: spamo -verbosity 1 -oc cutnotseq_memechip_out/spamo_out_11 -bgfile cutnotseq_memechip_out/background -primary TTTAAAAW cutnotseq_memechip_out/idr.cutnotseq.fa cutnotseq_memechip_out/dreme_out/dreme.xml cutnotseq_memechip_out/meme_out/meme.xml cutnotseq_memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo11 status: 0 time: 2.590034 Invoking: spamo -verbosity 1 -oc cutnotseq_memechip_out/spamo_out_12 -bgfile cutnotseq_memechip_out/background -primary CWCTGY cutnotseq_memechip_out/idr.cutnotseq.fa cutnotseq_memechip_out/dreme_out/dreme.xml cutnotseq_memechip_out/meme_out/meme.xml cutnotseq_memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo12 status: 0 time: 8.6778 Invoking: spamo -verbosity 1 -oc cutnotseq_memechip_out/spamo_out_13 -bgfile cutnotseq_memechip_out/background -primary AGGAAWG cutnotseq_memechip_out/idr.cutnotseq.fa cutnotseq_memechip_out/dreme_out/dreme.xml cutnotseq_memechip_out/meme_out/meme.xml cutnotseq_memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo13 status: 0 time: 3.102211 Invoking: spamo -verbosity 1 -oc cutnotseq_memechip_out/spamo_out_14 -bgfile cutnotseq_memechip_out/background -primary CGCAKGCG cutnotseq_memechip_out/idr.cutnotseq.fa cutnotseq_memechip_out/dreme_out/dreme.xml cutnotseq_memechip_out/meme_out/meme.xml cutnotseq_memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo14 status: 0 time: 0.708264 Invoking: spamo -verbosity 1 -oc cutnotseq_memechip_out/spamo_out_15 -bgfile cutnotseq_memechip_out/background -primary ACGTGD cutnotseq_memechip_out/idr.cutnotseq.fa cutnotseq_memechip_out/dreme_out/dreme.xml cutnotseq_memechip_out/meme_out/meme.xml cutnotseq_memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo15 status: 0 time: 2.461785 Invoking: spamo -verbosity 1 -oc cutnotseq_memechip_out/spamo_out_16 -bgfile cutnotseq_memechip_out/background -primary ATGCWAAT cutnotseq_memechip_out/idr.cutnotseq.fa cutnotseq_memechip_out/dreme_out/dreme.xml cutnotseq_memechip_out/meme_out/meme.xml cutnotseq_memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo16 status: 0 time: 1.10106 Invoking: spamo -verbosity 1 -oc cutnotseq_memechip_out/spamo_out_17 -bgfile cutnotseq_memechip_out/background -primary AAATTAGC cutnotseq_memechip_out/idr.cutnotseq.fa cutnotseq_memechip_out/dreme_out/dreme.xml cutnotseq_memechip_out/meme_out/meme.xml cutnotseq_memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo17 status: 0 time: 1.203725 Invoking: spamo -verbosity 1 -oc cutnotseq_memechip_out/spamo_out_18 -bgfile cutnotseq_memechip_out/background -primary CTCCTBCC cutnotseq_memechip_out/idr.cutnotseq.fa cutnotseq_memechip_out/dreme_out/dreme.xml cutnotseq_memechip_out/meme_out/meme.xml cutnotseq_memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo18 status: 0 time: 3.016863 Invoking: spamo -verbosity 1 -oc cutnotseq_memechip_out/spamo_out_19 -bgfile cutnotseq_memechip_out/background -primary CGGAAGTR cutnotseq_memechip_out/idr.cutnotseq.fa cutnotseq_memechip_out/dreme_out/dreme.xml cutnotseq_memechip_out/meme_out/meme.xml cutnotseq_memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo19 status: 0 time: 0.892082 Invoking: spamo -verbosity 1 -oc cutnotseq_memechip_out/spamo_out_20 -bgfile cutnotseq_memechip_out/background -primary CTGCRG cutnotseq_memechip_out/idr.cutnotseq.fa cutnotseq_memechip_out/dreme_out/dreme.xml cutnotseq_memechip_out/meme_out/meme.xml cutnotseq_memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo20 status: 0 time: 4.525103 Invoking: spamo -verbosity 1 -oc cutnotseq_memechip_out/spamo_out_21 -bgfile cutnotseq_memechip_out/background -primary ACADATGT cutnotseq_memechip_out/idr.cutnotseq.fa cutnotseq_memechip_out/dreme_out/dreme.xml cutnotseq_memechip_out/meme_out/meme.xml cutnotseq_memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo21 status: 0 time: 0.922754 Invoking: spamo -verbosity 1 -oc cutnotseq_memechip_out/spamo_out_22 -bgfile cutnotseq_memechip_out/background -primary TATATWCA cutnotseq_memechip_out/idr.cutnotseq.fa cutnotseq_memechip_out/dreme_out/dreme.xml cutnotseq_memechip_out/meme_out/meme.xml cutnotseq_memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo22 status: 0 time: 1.009677 Invoking: spamo -verbosity 1 -oc cutnotseq_memechip_out/spamo_out_23 -bgfile cutnotseq_memechip_out/background -primary CTCTACTA cutnotseq_memechip_out/idr.cutnotseq.fa cutnotseq_memechip_out/dreme_out/dreme.xml cutnotseq_memechip_out/meme_out/meme.xml cutnotseq_memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo23 status: 0 time: 0.743266 Invoking: spamo -verbosity 1 -oc cutnotseq_memechip_out/spamo_out_24 -bgfile cutnotseq_memechip_out/background -primary AGGCGKGG cutnotseq_memechip_out/idr.cutnotseq.fa cutnotseq_memechip_out/dreme_out/dreme.xml cutnotseq_memechip_out/meme_out/meme.xml cutnotseq_memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo24 status: 0 time: 1.83668 Invoking: spamo -verbosity 1 -oc cutnotseq_memechip_out/spamo_out_25 -bgfile cutnotseq_memechip_out/background -primary TAACAKAA cutnotseq_memechip_out/idr.cutnotseq.fa cutnotseq_memechip_out/dreme_out/dreme.xml cutnotseq_memechip_out/meme_out/meme.xml cutnotseq_memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo25 status: 0 time: 1.105337 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc cutnotseq_memechip_out/fimo_out_1 --bgfile cutnotseq_memechip_out/background --motif GGRGGMGGGGSYKSGGGSRGG cutnotseq_memechip_out/meme_out/meme.xml cutnotseq_memechip_out/idr.cutnotseq.fa Finished invoke: name: fimo1 status: 0 time: 2.672405 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc cutnotseq_memechip_out/fimo_out_2 --bgfile cutnotseq_memechip_out/background --motif WTWRWTWTTTTTTTTTTWTWWWTTWWWWTW cutnotseq_memechip_out/meme_out/meme.xml cutnotseq_memechip_out/idr.cutnotseq.fa Finished invoke: name: fimo2 status: 0 time: 3.00465 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc cutnotseq_memechip_out/fimo_out_3 --bgfile cutnotseq_memechip_out/background --motif CCACYAGR cutnotseq_memechip_out/dreme_out/dreme.xml cutnotseq_memechip_out/idr.cutnotseq.fa Finished invoke: name: fimo3 status: 0 time: 1.954095 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc cutnotseq_memechip_out/fimo_out_4 --bgfile cutnotseq_memechip_out/background --motif DTTTCY cutnotseq_memechip_out/dreme_out/dreme.xml cutnotseq_memechip_out/idr.cutnotseq.fa Finished invoke: name: fimo4 status: 0 time: 1.969024 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc cutnotseq_memechip_out/fimo_out_5 --bgfile cutnotseq_memechip_out/background --motif CCTGTAATCCCAGCDWCTBRGRAGRCTSMS cutnotseq_memechip_out/meme_out/meme.xml cutnotseq_memechip_out/idr.cutnotseq.fa Finished invoke: name: fimo5 status: 0 time: 2.657089 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc cutnotseq_memechip_out/fimo_out_6 --bgfile cutnotseq_memechip_out/background --motif CWGKAA cutnotseq_memechip_out/dreme_out/dreme.xml cutnotseq_memechip_out/idr.cutnotseq.fa Finished invoke: name: fimo6 status: 0 time: 1.938601 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc cutnotseq_memechip_out/fimo_out_7 --bgfile cutnotseq_memechip_out/background --motif AAATRM cutnotseq_memechip_out/dreme_out/dreme.xml cutnotseq_memechip_out/idr.cutnotseq.fa Finished invoke: name: fimo7 status: 0 time: 2.06098 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc cutnotseq_memechip_out/fimo_out_8 --bgfile cutnotseq_memechip_out/background --motif CASCWGG cutnotseq_memechip_out/dreme_out/dreme.xml cutnotseq_memechip_out/idr.cutnotseq.fa Finished invoke: name: fimo8 status: 0 time: 2.155668 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc cutnotseq_memechip_out/fimo_out_9 --bgfile cutnotseq_memechip_out/background --motif CAKCCTGG cutnotseq_memechip_out/dreme_out/dreme.xml cutnotseq_memechip_out/idr.cutnotseq.fa Finished invoke: name: fimo9 status: 0 time: 2.063503 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc cutnotseq_memechip_out/fimo_out_10 --bgfile cutnotseq_memechip_out/background --motif STGGGA cutnotseq_memechip_out/dreme_out/dreme.xml cutnotseq_memechip_out/idr.cutnotseq.fa Finished invoke: name: fimo10 status: 0 time: 1.956086 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc cutnotseq_memechip_out/fimo_out_11 --bgfile cutnotseq_memechip_out/background --motif TTTAAAAW cutnotseq_memechip_out/dreme_out/dreme.xml cutnotseq_memechip_out/idr.cutnotseq.fa Finished invoke: name: fimo11 status: 0 time: 1.996674 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc cutnotseq_memechip_out/fimo_out_12 --bgfile cutnotseq_memechip_out/background --motif CWCTGY cutnotseq_memechip_out/dreme_out/dreme.xml cutnotseq_memechip_out/idr.cutnotseq.fa Finished invoke: name: fimo12 status: 0 time: 2.105755 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc cutnotseq_memechip_out/fimo_out_13 --bgfile cutnotseq_memechip_out/background --motif AGGAAWG cutnotseq_memechip_out/dreme_out/dreme.xml cutnotseq_memechip_out/idr.cutnotseq.fa Finished invoke: name: fimo13 status: 0 time: 1.874427 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc cutnotseq_memechip_out/fimo_out_14 --bgfile cutnotseq_memechip_out/background --motif CGCAKGCG cutnotseq_memechip_out/dreme_out/dreme.xml cutnotseq_memechip_out/idr.cutnotseq.fa Finished invoke: name: fimo14 status: 0 time: 1.831354 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc cutnotseq_memechip_out/fimo_out_15 --bgfile cutnotseq_memechip_out/background --motif ACGTGD cutnotseq_memechip_out/dreme_out/dreme.xml cutnotseq_memechip_out/idr.cutnotseq.fa Finished invoke: name: fimo15 status: 0 time: 2.17401 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc cutnotseq_memechip_out/fimo_out_16 --bgfile cutnotseq_memechip_out/background --motif ATGCWAAT cutnotseq_memechip_out/dreme_out/dreme.xml cutnotseq_memechip_out/idr.cutnotseq.fa Finished invoke: name: fimo16 status: 0 time: 2.079797 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc cutnotseq_memechip_out/fimo_out_17 --bgfile cutnotseq_memechip_out/background --motif AAATTAGC cutnotseq_memechip_out/dreme_out/dreme.xml cutnotseq_memechip_out/idr.cutnotseq.fa Finished invoke: name: fimo17 status: 0 time: 2.204086 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc cutnotseq_memechip_out/fimo_out_18 --bgfile cutnotseq_memechip_out/background --motif CTCCTBCC cutnotseq_memechip_out/dreme_out/dreme.xml cutnotseq_memechip_out/idr.cutnotseq.fa Finished invoke: name: fimo18 status: 0 time: 2.11925 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc cutnotseq_memechip_out/fimo_out_19 --bgfile cutnotseq_memechip_out/background --motif CGGAAGTR cutnotseq_memechip_out/dreme_out/dreme.xml cutnotseq_memechip_out/idr.cutnotseq.fa Finished invoke: name: fimo19 status: 0 time: 2.23034 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc cutnotseq_memechip_out/fimo_out_20 --bgfile cutnotseq_memechip_out/background --motif CTGCRG cutnotseq_memechip_out/dreme_out/dreme.xml cutnotseq_memechip_out/idr.cutnotseq.fa Finished invoke: name: fimo20 status: 0 time: 2.119513 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc cutnotseq_memechip_out/fimo_out_21 --bgfile cutnotseq_memechip_out/background --motif ACADATGT cutnotseq_memechip_out/dreme_out/dreme.xml cutnotseq_memechip_out/idr.cutnotseq.fa Finished invoke: name: fimo21 status: 0 time: 1.864678 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc cutnotseq_memechip_out/fimo_out_22 --bgfile cutnotseq_memechip_out/background --motif TATATWCA cutnotseq_memechip_out/dreme_out/dreme.xml cutnotseq_memechip_out/idr.cutnotseq.fa Finished invoke: name: fimo22 status: 0 time: 2.380396 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc cutnotseq_memechip_out/fimo_out_23 --bgfile cutnotseq_memechip_out/background --motif CTCTACTA cutnotseq_memechip_out/dreme_out/dreme.xml cutnotseq_memechip_out/idr.cutnotseq.fa Finished invoke: name: fimo23 status: 0 time: 2.210118 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc cutnotseq_memechip_out/fimo_out_24 --bgfile cutnotseq_memechip_out/background --motif AGGCGKGG cutnotseq_memechip_out/dreme_out/dreme.xml cutnotseq_memechip_out/idr.cutnotseq.fa Finished invoke: name: fimo24 status: 0 time: 2.300423 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc cutnotseq_memechip_out/fimo_out_25 --bgfile cutnotseq_memechip_out/background --motif TAACAKAA cutnotseq_memechip_out/dreme_out/dreme.xml cutnotseq_memechip_out/idr.cutnotseq.fa Finished invoke: name: fimo25 status: 0 time: 1.880078 Writing output Invoking: meme-chip_html_to_tsv cutnotseq_memechip_out/meme-chip.html cutnotseq_memechip_out/summary.tsv Finished invoke: name: summary status: 0 time: 0.455668 Done