Varbook Variant Analysis Report
Table of Contents
Broad_neurological_disorders
Broad_neurological_disorders
Variant: chr10:55578669:G:C
Overview
This section presents analysis for variant chr10:55578669:G:C across KUN_FB fetal brain models.
The following analyses are included:
- Model scatterplot showing logFC vs AAQ values
- Model specificity barplot (if applicable)
- Model prediction profiles (if applicable)
Model Scatterplot Analysis
The scatterplot below shows the relationship between log fold-change (logFC) and average allelic quantification (AAQ) across KUN_FB models for variant chr10:55578669:G:C.
Variant chr10:55578669:G:C: logfc vs aaq
Model Scatterplot
This plot shows the distribution of logfc and aaq values across different models for variant chr10:55578669:G:C.
- Green points: Prioritized in Peak
- Red points: Prioritized in Promoter
- Blue points: Prioritized Out of Peak
- Gray points: Other
Marker Shapes
- Circle: Fetal Brain models (KUN_FB)
- Square: HDMA models
- Triangle: Thyroid models (KUN_THYROID)
Summary for chr10:55578669:G:C
The analyses above show the variant's effects across different fetal brain cell types and regions.
Variant: chrX:49242759:T:G
Overview
This section presents analysis for variant chrX:49242759:T:G across KUN_FB fetal brain models.
The following analyses are included:
- Model scatterplot showing logFC vs AAQ values
- Model specificity barplot (if applicable)
- Model prediction profiles (if applicable)
Model Scatterplot Analysis
The scatterplot below shows the relationship between log fold-change (logFC) and average allelic quantification (AAQ) across KUN_FB models for variant chrX:49242759:T:G.
Variant chrX:49242759:T:G: logfc vs aaq
Model Scatterplot
This plot shows the distribution of logfc and aaq values across different models for variant chrX:49242759:T:G.
- Green points: Prioritized in Peak
- Red points: Prioritized in Promoter
- Blue points: Prioritized Out of Peak
- Gray points: Other
Marker Shapes
- Circle: Fetal Brain models (KUN_FB)
- Square: HDMA models
- Triangle: Thyroid models (KUN_THYROID)
Summary for chrX:49242759:T:G
The analyses above show the variant's effects across different fetal brain cell types and regions.