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| Name | Last modified | Size | Description |
|---|---|---|---|---|
| Parent Directory | - | ||
| R/ | 2025-12-18 23:02 | - | |
| expression_data/ | 2025-12-19 21:29 | - | |
| gene_plots/ | 2026-01-01 01:22 | - | |
| gene_sets/ | 2025-12-18 23:02 | - | |
| misc/ | 2025-12-18 23:02 | - | |
| output_plots/ | 2025-12-19 21:17 | - | |
| output_plots_named/ | 2025-12-19 21:27 | - | |
| renv/ | 2025-12-19 03:55 | - | |
| seurat_objects/ | 2025-12-18 01:27 | - | |
| test_swap/ | 2025-12-19 21:32 | - | |
| test_zero/ | 2025-12-19 21:39 | - | |
| pcw_summary_stats.txt | 2025-12-19 18:16 | 238 | |
| get_data.sh | 2025-12-18 23:02 | 241 | |
| cluster_names.txt | 2025-12-19 21:24 | 242 | |
| brainchromatin.Rproj | 2025-12-19 01:39 | 253 | |
| SBF2_expression_by_pcw.txt | 2025-12-19 06:39 | 278 | |
| README.md | 2025-12-18 23:02 | 641 | |
| cluster_summary_stats.txt | 2025-12-19 18:16 | 1.0K | |
| cluster_centroids_umap.txt | 2025-12-19 18:16 | 1.0K | |
| create_dotplot_example.R | 2025-12-19 18:28 | 1.3K | |
| SBF2_expression_by_cluster.txt | 2025-12-19 06:39 | 1.3K | |
| INSTALLATION_SUMMARY.md | 2025-12-19 04:02 | 2.2K | |
| setup_minimal.R | 2025-12-19 03:55 | 2.2K | |
| R_VERSION_NOTES.md | 2025-12-19 02:57 | 2.8K | |
| CLAUDE.md | 2025-12-19 02:45 | 2.9K | |
| validate_setup.R | 2025-12-19 02:50 | 2.9K | |
| MERGED_FILE_SUMMARY.md | 2025-12-19 19:21 | 3.7K | |
| PLOT_GENE_SCRIPT_ANALYSIS.md | 2026-01-01 00:25 | 4.5K | |
| analyze_transcripts.R | 2025-12-19 02:48 | 4.6K | |
| SETUP_INSTRUCTIONS.md | 2025-12-19 02:48 | 4.7K | |
| setup_renv.R | 2025-12-19 03:55 | 4.9K | |
| quick_analysis.R | 2025-12-19 02:49 | 5.0K | |
| GETTING_STARTED.md | 2025-12-19 02:57 | 5.0K | |
| SCRIPT_VALIDATION_ANALYSIS.md | 2026-01-01 01:30 | 5.3K | |
| WORKFLOW_SUMMARY.md | 2025-12-19 21:18 | 5.4K | |
| QUICK_GENE_LOOKUP_GUIDE.md | 2025-12-19 07:39 | 5.8K | |
| extract_cell_coordinates.R | 2025-12-19 18:15 | 6.2K | |
| merge_all_expression.R | 2025-12-19 21:25 | 6.9K | |
| PLOT_GENE_EXPRESSION_GUIDE.md | 2025-12-19 19:40 | 6.9K | |
| links.txt | 2025-12-18 23:02 | 7.1K | |
| setup_log.txt | 2025-12-19 03:19 | 7.2K | |
| map_gene_ids_to_symbols.R | 2025-12-19 19:30 | 7.3K | |
| dotplot_example_SBF2.pdf | 2025-12-19 18:29 | 7.9K | |
| expression_generation.log | 2025-12-19 07:35 | 9.4K | |
| ANALYSIS_OUTLINE.md | 2025-12-19 04:08 | 9.6K | |
| POSITION_DATA_EXPLAINED.md | 2025-12-19 18:15 | 9.7K | |
| SPREADSHEET_OUTLINE.md | 2025-12-19 07:29 | 10K | |
| SPREADSHEET_GENERATION_SUMMARY.md | 2025-12-19 07:38 | 11K | |
| merge_expression_files.R | 2025-12-19 18:57 | 15K | |
| plot_gene_expression.py | 2025-12-19 19:37 | 18K | |
| generate_expression_spreadsheets.R | 2025-12-19 07:30 | 20K | |
| plot_gene.py | 2026-01-01 01:35 | 21K | |
| renv.lock | 2025-12-19 03:56 | 323K | |
| gene_id_to_symbol_mapping.txt | 2025-12-19 19:30 | 1.9M | |
| SBF2_expression_plots.pdf | 2025-12-19 06:41 | 6.7M | |
| cell_coordinates_with_metadata.txt | 2025-12-19 18:16 | 9.1M | |
| cell_coordinates_with_SBF2.txt | 2025-12-19 18:16 | 9.5M | |
| cell_pca_coordinates.txt | 2025-12-19 18:16 | 12M | |
| expression_simple_merged.tsv | 2025-12-19 19:13 | 21M | |
| expression_cluster_pcw_only.tsv | 2025-12-19 19:16 | 49M | |
| all_expression_merged.tsv | 2025-12-19 19:10 | 70M | |