B
    ~]              
   @   s   d dl Z d dlmZ d dlZdd Zdd Zdd Zdd	 Z	d
d Z
dddddZeee	e
dZeedddfddZddddeei dddf
ddZdS )    Nc             C   s~   | d d |d d d f  }t | d d t d |  t || t d d d d f  }| t j|ddd d d f  S )NgMbP?gMb?      )axis)nplogsum)Zpwm
background
odds_ratioic r   ?/srv/www/encode4crisprhack/gkmexplain/notebooks/viz_sequence.pyic_scale   s    &r   c          	   C   s   t ddgddgddgddggt ddgddgddgddggt ddgddgd	d
gdd
ggg}xX|D ]P}| tjjt d|gd d d f | t ||gd d d f  ||d qjW d S )Ng        g      ?g      ?g?g?g?g?g?g333333?g333333?g333333?r   )	facecolor	edgecolor)r   array	add_patch
matplotlibpatchesPolygon)axbase	left_edgeheightcolorZa_polygon_coordsZpolygon_coordsr   r   r   plot_a   s&    


&r   c          
   C   s   |  tjj|d |d|  gd|||d |  tjj|d |d|  gdd| ddd |  tjj|d |gd	|ddd
d d S )Ng?g      ?g?)xywidthr   r   r   gQ?gffffff?whiter   g      ?T)r   r   r   r   r   fill)r   r   r   Ellipse	Rectangle)r   r   r   r   r   r   r   r   plot_c(   s     $r!   c          
   C   s   |  tjj|d |d|  gd|||d |  tjj|d |d|  gdd| ddd |  tjj|d |gd	|ddd
d |  tjj|d |d|  gdd| ||d
d |  tjj|d |d|  gdd| ||d
d d S )Ng?g      ?g?)r   r   r   r   r   gQ?gffffff?r   r   g      ?T)r   r   r   r   r   r   gffffff?g(\µ?gʡE?g(\?g      ?gffffff?gV-?g333333?)r   r   r   r   r    )r   r   r   r   r   r   r   r   plot_g1   s     $$$r"   c          
   C   sX   |  tjj|d |gd|||dd |  tjj||d|  gdd| ||dd d S )Ng?g?T)r   r   r   r   r   r   g?g      ?)r   r   r   r    )r   r   r   r   r   r   r   r   plot_t>   s    r#   greenblueorangered)r   r   r       c             C   s  t |jdkrt|}t |jdks0t|j|jd dkrX|jd dkrX|dd}|jd dksjtd}d}g }g }xt|jd D ]}tt||d d f dd d	}d}d}xh|D ]`}||d  }||d  }|d dkr|}||d 7 }n|}||d 7 }|| |||d |d
 qW t	||}t
||}|| || qW x|D ]}x|| D ]t\}}|dkr||jd kstt
||| }t	||| }| tjj||g|| || |dd q`W qRW | jtd|jd d | t	t|| t|| }|d kr8| || ||  n| |d |d  |	d krp| | |jd |  n| |	d |	d  | |
 | jjd | jdddd || || fS )Nr(   r   r      r   g        c             S   s   t | d S )Nr   )abs)xr   r   r   <lambda>\       z'plot_weights_given_ax.<locals>.<lambda>)key)r   r   r   r   r   F)r   r   r   r   r      i  kz--)r,   r   	linestyle)lenshaper   squeezeAssertionError	transposerangesorted	enumeratemaxminappendr   r   r   r    xaxis	set_ticksaranger+   set_ylimset_xlim
set_ylabelyaxislabelset_fontsizeaxvline)r   r   height_padding_factorlength_paddingsubticks_frequency	highlightcolors
plot_funcsylimxlimylabelZmax_pos_heightZmin_neg_heightZheights_at_positionsZdepths_at_positionsiZ	acgt_valsZpositive_height_so_farZnegative_height_so_farletterZ	plot_funcr   Zheight_so_far	start_posend_pos	min_depth
max_heightheight_paddingr   r   r   plot_weights_given_axF   sd    

 




 


rX   )   r(   g?g      ?c             C   s@   t j|d}|d}t|| ||||||||	|
d}t   |S )N)figsizeo   )r   r   rH   rI   rJ   rL   rM   rK   rN   rO   rP   )pltfigureadd_subplotrX   show)r   rZ   rH   rI   rJ   rL   rM   rK   rN   rO   rP   figr   r   r   r   plot_weights   s    
ra   )r   matplotlib.pyplotpyplotr\   numpyr   r   r   r!   r"   r#   Zdefault_colorsZdefault_plot_funcsrX   ra   r   r   r   r   <module>   s0   	>