2021-09-20 17:59:50,921:eu_debug: submission=False: In non-submission mode. 2021-09-20 17:59:51,851:eu_debug: submission=True: In submission mode. 2021-09-20 17:59:52,344:eu_debug: IN post(). 2021-09-20 17:59:52,344:eu_debug: <<<<<< POST biosample record will-greenleaf:K562_CRISPRa_CTCF_Growth_T7_R1.Biosample To DCC with URL https://www.encodeproject.org/biosample and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRa_CTCF_Growth_T7_R1.Biosample" ], "biosample_ontology": "encode:K562", "donor": "ENCDO000AAD", "genetic_modifications": [ "will-greenleaf:activation" ], "lab": "/labs/will-greenleaf/", "organism": "/organisms/human/", "post_nucleic_acid_delivery_time": 7, "post_nucleic_acid_delivery_time_units": "day", "source": "/sources/michael-bassik/", "treatments": [ "will-greenleaf:1ugml_puromycin" ] } 2021-09-20 17:59:52,491:eu_debug: Failed to POST will-greenleaf:K562_CRISPRa_CTCF_Growth_T7_R1.Biosample 2021-09-20 17:59:52,491:eu_debug: <<<<<< DCC POST RESPONSE: 2021-09-20 17:59:52,491:eu_debug: { "@type": [ "ValidationFailure", "Error" ], "code": 422, "description": "Failed validation", "errors": [ { "description": "'award' is a required property", "location": "body", "name": [] } ], "status": "error", "title": "Unprocessable Entity" } 2021-09-20 18:00:58,580:eu_debug: submission=False: In non-submission mode. 2021-09-20 18:00:58,934:eu_debug: submission=True: In submission mode. 2021-09-20 18:00:59,432:eu_debug: IN post(). 2021-09-20 18:00:59,433:eu_debug: <<<<<< POST biosample record will-greenleaf:K562_CRISPRa_CTCF_Growth_T7_R1.Biosample To DCC with URL https://www.encodeproject.org/biosample and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRa_CTCF_Growth_T7_R1.Biosample" ], "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "donor": "ENCDO000AAD", "genetic_modifications": [ "will-greenleaf:activation" ], "lab": "/labs/will-greenleaf/", "organism": "/organisms/human/", "post_nucleic_acid_delivery_time": 7, "post_nucleic_acid_delivery_time_units": "day", "source": "/sources/michael-bassik/", "treatments": [ "will-greenleaf:1ugml_puromycin" ] } 2021-09-20 18:00:59,797:eu_debug: Success. 2021-09-20 18:00:59,798:eu_debug: IN post(). 2021-09-20 18:00:59,798:eu_debug: <<<<<< POST biosample record will-greenleaf:K562_CRISPRa_CTCF_Growth_T7_R2.Biosample To DCC with URL https://www.encodeproject.org/biosample and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRa_CTCF_Growth_T7_R2.Biosample" ], "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "donor": "ENCDO000AAD", "genetic_modifications": [ "will-greenleaf:activation" ], "lab": "/labs/will-greenleaf/", "organism": "/organisms/human/", "post_nucleic_acid_delivery_time": 7, "post_nucleic_acid_delivery_time_units": "day", "source": "/sources/michael-bassik/", "treatments": [ "will-greenleaf:1ugml_puromycin" ] } 2021-09-20 18:01:00,158:eu_debug: Success. 2021-09-20 18:01:00,159:eu_debug: IN post(). 2021-09-20 18:01:00,160:eu_debug: <<<<<< POST biosample record will-greenleaf:K562_CRISPRa_CTCF_Growth_T21_R1.Biosample To DCC with URL https://www.encodeproject.org/biosample and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRa_CTCF_Growth_T21_R1.Biosample" ], "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "donor": "ENCDO000AAD", "genetic_modifications": [ "will-greenleaf:activation" ], "lab": "/labs/will-greenleaf/", "organism": "/organisms/human/", "post_nucleic_acid_delivery_time": 7, "post_nucleic_acid_delivery_time_units": "day", "source": "/sources/michael-bassik/", "treatments": [ "will-greenleaf:1ugml_puromycin" ] } 2021-09-20 18:01:00,496:eu_debug: Success. 2021-09-20 18:01:00,496:eu_debug: IN post(). 2021-09-20 18:01:00,497:eu_debug: <<<<<< POST biosample record will-greenleaf:K562_CRISPRa_CTCF_Growth_T21_R2.Biosample To DCC with URL https://www.encodeproject.org/biosample and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRa_CTCF_Growth_T21_R2.Biosample" ], "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "donor": "ENCDO000AAD", "genetic_modifications": [ "will-greenleaf:activation" ], "lab": "/labs/will-greenleaf/", "organism": "/organisms/human/", "post_nucleic_acid_delivery_time": 7, "post_nucleic_acid_delivery_time_units": "day", "source": "/sources/michael-bassik/", "treatments": [ "will-greenleaf:1ugml_puromycin" ] } 2021-09-20 18:01:00,854:eu_debug: Success. 2021-09-20 18:01:00,855:eu_debug: IN post(). 2021-09-20 18:01:00,855:eu_debug: <<<<<< POST biosample record will-greenleaf:K562_CRISPRd_CTCF_Growth_T7_R1.Biosample To DCC with URL https://www.encodeproject.org/biosample and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRd_CTCF_Growth_T7_R1.Biosample" ], "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "donor": "ENCDO000AAD", "genetic_modifications": [ "will-greenleaf:dCas9" ], "lab": "/labs/will-greenleaf/", "organism": "/organisms/human/", "post_nucleic_acid_delivery_time": 7, "post_nucleic_acid_delivery_time_units": "day", "source": "/sources/michael-bassik/", "treatments": [ "will-greenleaf:1ugml_puromycin" ] } 2021-09-20 18:01:01,186:eu_debug: Success. 2021-09-20 18:01:01,186:eu_debug: IN post(). 2021-09-20 18:01:01,187:eu_debug: <<<<<< POST biosample record will-greenleaf:K562_CRISPRd_CTCF_Growth_T7_R2.Biosample To DCC with URL https://www.encodeproject.org/biosample and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRd_CTCF_Growth_T7_R2.Biosample" ], "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "donor": "ENCDO000AAD", "genetic_modifications": [ "will-greenleaf:dCas9" ], "lab": "/labs/will-greenleaf/", "organism": "/organisms/human/", "post_nucleic_acid_delivery_time": 7, "post_nucleic_acid_delivery_time_units": "day", "source": "/sources/michael-bassik/", "treatments": [ "will-greenleaf:1ugml_puromycin" ] } 2021-09-20 18:01:01,514:eu_debug: Success. 2021-09-20 18:01:01,515:eu_debug: IN post(). 2021-09-20 18:01:01,515:eu_debug: <<<<<< POST biosample record will-greenleaf:K562_CRISPRd_CTCF_Growth_T21_R1.Biosample To DCC with URL https://www.encodeproject.org/biosample and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRd_CTCF_Growth_T21_R1.Biosample" ], "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "donor": "ENCDO000AAD", "genetic_modifications": [ "will-greenleaf:dCas9" ], "lab": "/labs/will-greenleaf/", "organism": "/organisms/human/", "post_nucleic_acid_delivery_time": 7, "post_nucleic_acid_delivery_time_units": "day", "source": "/sources/michael-bassik/", "treatments": [ "will-greenleaf:1ugml_puromycin" ] } 2021-09-20 18:01:01,861:eu_debug: Success. 2021-09-20 18:01:01,861:eu_debug: IN post(). 2021-09-20 18:01:01,862:eu_debug: <<<<<< POST biosample record will-greenleaf:K562_CRISPRd_CTCF_Growth_T21_R2.Biosample To DCC with URL https://www.encodeproject.org/biosample and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRd_CTCF_Growth_T21_R2.Biosample" ], "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "donor": "ENCDO000AAD", "genetic_modifications": [ "will-greenleaf:dCas9" ], "lab": "/labs/will-greenleaf/", "organism": "/organisms/human/", "post_nucleic_acid_delivery_time": 7, "post_nucleic_acid_delivery_time_units": "day", "source": "/sources/michael-bassik/", "treatments": [ "will-greenleaf:1ugml_puromycin" ] } 2021-09-20 18:01:02,206:eu_debug: Success. 2021-09-20 18:01:02,207:eu_debug: IN post(). 2021-09-20 18:01:02,207:eu_debug: <<<<<< POST biosample record will-greenleaf:K562_CRISPRi_CTCF_Growth_T7_R1.Biosample To DCC with URL https://www.encodeproject.org/biosample and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRi_CTCF_Growth_T7_R1.Biosample" ], "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "donor": "ENCDO000AAD", "genetic_modifications": [ "will-greenleaf:interference" ], "lab": "/labs/will-greenleaf/", "organism": "/organisms/human/", "post_nucleic_acid_delivery_time": 7, "post_nucleic_acid_delivery_time_units": "day", "source": "/sources/michael-bassik/", "treatments": [ "will-greenleaf:1ugml_puromycin" ] } 2021-09-20 18:01:02,541:eu_debug: Success. 2021-09-20 18:01:02,542:eu_debug: IN post(). 2021-09-20 18:01:02,542:eu_debug: <<<<<< POST biosample record will-greenleaf:K562_CRISPRi_CTCF_Growth_T7_R2.Biosample To DCC with URL https://www.encodeproject.org/biosample and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRi_CTCF_Growth_T7_R2.Biosample" ], "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "donor": "ENCDO000AAD", "genetic_modifications": [ "will-greenleaf:interference" ], "lab": "/labs/will-greenleaf/", "organism": "/organisms/human/", "post_nucleic_acid_delivery_time": 7, "post_nucleic_acid_delivery_time_units": "day", "source": "/sources/michael-bassik/", "treatments": [ "will-greenleaf:1ugml_puromycin" ] } 2021-09-20 18:01:02,862:eu_debug: Success. 2021-09-20 18:01:02,863:eu_debug: IN post(). 2021-09-20 18:01:02,864:eu_debug: <<<<<< POST biosample record will-greenleaf:K562_CRISPRi_CTCF_Growth_T21_R1.Biosample To DCC with URL https://www.encodeproject.org/biosample and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRi_CTCF_Growth_T21_R1.Biosample" ], "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "donor": "ENCDO000AAD", "genetic_modifications": [ "will-greenleaf:interference" ], "lab": "/labs/will-greenleaf/", "organism": "/organisms/human/", "post_nucleic_acid_delivery_time": 7, "post_nucleic_acid_delivery_time_units": "day", "source": "/sources/michael-bassik/", "treatments": [ "will-greenleaf:1ugml_puromycin" ] } 2021-09-20 18:01:03,187:eu_debug: Success. 2021-09-20 18:01:03,187:eu_debug: IN post(). 2021-09-20 18:01:03,188:eu_debug: <<<<<< POST biosample record will-greenleaf:K562_CRISPRi_CTCF_Growth_T21_R2.Biosample To DCC with URL https://www.encodeproject.org/biosample and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRi_CTCF_Growth_T21_R2.Biosample" ], "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "donor": "ENCDO000AAD", "genetic_modifications": [ "will-greenleaf:interference" ], "lab": "/labs/will-greenleaf/", "organism": "/organisms/human/", "post_nucleic_acid_delivery_time": 7, "post_nucleic_acid_delivery_time_units": "day", "source": "/sources/michael-bassik/", "treatments": [ "will-greenleaf:1ugml_puromycin" ] } 2021-09-20 18:01:03,865:eu_debug: Success. 2021-09-20 18:01:03,866:eu_debug: IN post(). 2021-09-20 18:01:03,866:eu_debug: <<<<<< POST biosample record will-greenleaf:K562_CRISPRk_CTCF_Growth_T7_R1.Biosample To DCC with URL https://www.encodeproject.org/biosample and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF_Growth_T7_R1.Biosample" ], "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "donor": "ENCDO000AAD", "genetic_modifications": [ "will-greenleaf:deletion" ], "lab": "/labs/will-greenleaf/", "organism": "/organisms/human/", "post_nucleic_acid_delivery_time": 7, "post_nucleic_acid_delivery_time_units": "day", "source": "/sources/michael-bassik/", "treatments": [ "will-greenleaf:1ugml_puromycin" ] } 2021-09-20 18:01:04,463:eu_debug: Success. 2021-09-20 18:01:04,464:eu_debug: IN post(). 2021-09-20 18:01:04,464:eu_debug: <<<<<< POST biosample record will-greenleaf:K562_CRISPRk_CTCF_Growth_T7_R2.Biosample To DCC with URL https://www.encodeproject.org/biosample and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF_Growth_T7_R2.Biosample" ], "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "donor": "ENCDO000AAD", "genetic_modifications": [ "will-greenleaf:deletion" ], "lab": "/labs/will-greenleaf/", "organism": "/organisms/human/", "post_nucleic_acid_delivery_time": 7, "post_nucleic_acid_delivery_time_units": "day", "source": "/sources/michael-bassik/", "treatments": [ "will-greenleaf:1ugml_puromycin" ] } 2021-09-20 18:01:04,794:eu_debug: Success. 2021-09-20 18:01:04,795:eu_debug: IN post(). 2021-09-20 18:01:04,796:eu_debug: <<<<<< POST biosample record will-greenleaf:K562_CRISPRk_CTCF_Growth_T21_R1.Biosample To DCC with URL https://www.encodeproject.org/biosample and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF_Growth_T21_R1.Biosample" ], "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "donor": "ENCDO000AAD", "genetic_modifications": [ "will-greenleaf:deletion" ], "lab": "/labs/will-greenleaf/", "organism": "/organisms/human/", "post_nucleic_acid_delivery_time": 7, "post_nucleic_acid_delivery_time_units": "day", "source": "/sources/michael-bassik/", "treatments": [ "will-greenleaf:1ugml_puromycin" ] } 2021-09-20 18:01:05,435:eu_debug: Success. 2021-09-20 18:01:05,436:eu_debug: IN post(). 2021-09-20 18:01:05,437:eu_debug: <<<<<< POST biosample record will-greenleaf:K562_CRISPRk_CTCF_Growth_T21_R2.Biosample To DCC with URL https://www.encodeproject.org/biosample and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF_Growth_T21_R2.Biosample" ], "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "donor": "ENCDO000AAD", "genetic_modifications": [ "will-greenleaf:deletion" ], "lab": "/labs/will-greenleaf/", "organism": "/organisms/human/", "post_nucleic_acid_delivery_time": 7, "post_nucleic_acid_delivery_time_units": "day", "source": "/sources/michael-bassik/", "treatments": [ "will-greenleaf:1ugml_puromycin" ] } 2021-09-20 18:01:06,043:eu_debug: Success. 2021-09-20 18:01:20,647:eu_debug: submission=False: In non-submission mode. 2021-09-20 18:01:21,273:eu_debug: submission=True: In submission mode. 2021-09-20 18:01:21,760:eu_debug: IN post(). 2021-09-20 18:01:21,760:eu_debug: <<<<<< POST library record will-greenleaf:K562_CRISPRa_CTCF_Growth_T7_R1.Library To DCC with URL https://www.encodeproject.org/library and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRa_CTCF_Growth_T7_R1.Library" ], "award": "/awards/UM1HG009436/", "biosample": "will-greenleaf:K562_CRISPRa_CTCF_Growth_T7_R1.Biosample", "extraction_method": "QIAGEN DNeasy Blood & Tissue Kit", "lab": "/labs/will-greenleaf/", "nucleic_acid_term_name": "DNA" } 2021-09-20 18:01:21,897:eu_debug: Success. 2021-09-20 18:01:21,897:eu_debug: IN post(). 2021-09-20 18:01:21,898:eu_debug: <<<<<< POST library record will-greenleaf:K562_CRISPRa_CTCF_Growth_T7_R2.Library To DCC with URL https://www.encodeproject.org/library and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRa_CTCF_Growth_T7_R2.Library" ], "award": "/awards/UM1HG009436/", "biosample": "will-greenleaf:K562_CRISPRa_CTCF_Growth_T7_R2.Biosample", "extraction_method": "QIAGEN DNeasy Blood & Tissue Kit", "lab": "/labs/will-greenleaf/", "nucleic_acid_term_name": "DNA" } 2021-09-20 18:01:22,019:eu_debug: Success. 2021-09-20 18:01:22,020:eu_debug: IN post(). 2021-09-20 18:01:22,020:eu_debug: <<<<<< POST library record will-greenleaf:K562_CRISPRa_CTCF_Growth_T21_R1.Library To DCC with URL https://www.encodeproject.org/library and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRa_CTCF_Growth_T21_R1.Library" ], "award": "/awards/UM1HG009436/", "biosample": "will-greenleaf:K562_CRISPRa_CTCF_Growth_T21_R1.Biosample", "extraction_method": "QIAGEN DNeasy Blood & Tissue Kit", "lab": "/labs/will-greenleaf/", "nucleic_acid_term_name": "DNA" } 2021-09-20 18:01:22,142:eu_debug: Success. 2021-09-20 18:01:22,143:eu_debug: IN post(). 2021-09-20 18:01:22,143:eu_debug: <<<<<< POST library record will-greenleaf:K562_CRISPRa_CTCF_Growth_T21_R2.Library To DCC with URL https://www.encodeproject.org/library and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRa_CTCF_Growth_T21_R2.Library" ], "award": "/awards/UM1HG009436/", "biosample": "will-greenleaf:K562_CRISPRa_CTCF_Growth_T21_R2.Biosample", "extraction_method": "QIAGEN DNeasy Blood & Tissue Kit", "lab": "/labs/will-greenleaf/", "nucleic_acid_term_name": "DNA" } 2021-09-20 18:01:22,272:eu_debug: Success. 2021-09-20 18:01:22,273:eu_debug: IN post(). 2021-09-20 18:01:22,274:eu_debug: <<<<<< POST library record will-greenleaf:K562_CRISPRd_CTCF_Growth_T7_R1.Library To DCC with URL https://www.encodeproject.org/library and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRd_CTCF_Growth_T7_R1.Library" ], "award": "/awards/UM1HG009436/", "biosample": "will-greenleaf:K562_CRISPRd_CTCF_Growth_T7_R1.Biosample", "extraction_method": "QIAGEN DNeasy Blood & Tissue Kit", "lab": "/labs/will-greenleaf/", "nucleic_acid_term_name": "DNA" } 2021-09-20 18:01:22,399:eu_debug: Success. 2021-09-20 18:01:22,399:eu_debug: IN post(). 2021-09-20 18:01:22,400:eu_debug: <<<<<< POST library record will-greenleaf:K562_CRISPRd_CTCF_Growth_T7_R2.Library To DCC with URL https://www.encodeproject.org/library and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRd_CTCF_Growth_T7_R2.Library" ], "award": "/awards/UM1HG009436/", "biosample": "will-greenleaf:K562_CRISPRd_CTCF_Growth_T7_R2.Biosample", "extraction_method": "QIAGEN DNeasy Blood & Tissue Kit", "lab": "/labs/will-greenleaf/", "nucleic_acid_term_name": "DNA" } 2021-09-20 18:01:22,524:eu_debug: Success. 2021-09-20 18:01:22,524:eu_debug: IN post(). 2021-09-20 18:01:22,525:eu_debug: <<<<<< POST library record will-greenleaf:K562_CRISPRd_CTCF_Growth_T21_R1.Library To DCC with URL https://www.encodeproject.org/library and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRd_CTCF_Growth_T21_R1.Library" ], "award": "/awards/UM1HG009436/", "biosample": "will-greenleaf:K562_CRISPRd_CTCF_Growth_T21_R1.Biosample", "extraction_method": "QIAGEN DNeasy Blood & Tissue Kit", "lab": "/labs/will-greenleaf/", "nucleic_acid_term_name": "DNA" } 2021-09-20 18:01:22,649:eu_debug: Success. 2021-09-20 18:01:22,650:eu_debug: IN post(). 2021-09-20 18:01:22,651:eu_debug: <<<<<< POST library record will-greenleaf:K562_CRISPRd_CTCF_Growth_T21_R2.Library To DCC with URL https://www.encodeproject.org/library and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRd_CTCF_Growth_T21_R2.Library" ], "award": "/awards/UM1HG009436/", "biosample": "will-greenleaf:K562_CRISPRd_CTCF_Growth_T21_R2.Biosample", "extraction_method": "QIAGEN DNeasy Blood & Tissue Kit", "lab": "/labs/will-greenleaf/", "nucleic_acid_term_name": "DNA" } 2021-09-20 18:01:22,770:eu_debug: Success. 2021-09-20 18:01:22,771:eu_debug: IN post(). 2021-09-20 18:01:22,772:eu_debug: <<<<<< POST library record will-greenleaf:K562_CRISPRi_CTCF_Growth_T7_R1.Library To DCC with URL https://www.encodeproject.org/library and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRi_CTCF_Growth_T7_R1.Library" ], "award": "/awards/UM1HG009436/", "biosample": "will-greenleaf:K562_CRISPRi_CTCF_Growth_T7_R1.Biosample", "extraction_method": "QIAGEN DNeasy Blood & Tissue Kit", "lab": "/labs/will-greenleaf/", "nucleic_acid_term_name": "DNA" } 2021-09-20 18:01:22,931:eu_debug: Success. 2021-09-20 18:01:22,931:eu_debug: IN post(). 2021-09-20 18:01:22,932:eu_debug: <<<<<< POST library record will-greenleaf:K562_CRISPRi_CTCF_Growth_T7_R2.Library To DCC with URL https://www.encodeproject.org/library and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRi_CTCF_Growth_T7_R2.Library" ], "award": "/awards/UM1HG009436/", "biosample": "will-greenleaf:K562_CRISPRi_CTCF_Growth_T7_R2.Biosample", "extraction_method": "QIAGEN DNeasy Blood & Tissue Kit", "lab": "/labs/will-greenleaf/", "nucleic_acid_term_name": "DNA" } 2021-09-20 18:01:23,052:eu_debug: Success. 2021-09-20 18:01:23,052:eu_debug: IN post(). 2021-09-20 18:01:23,053:eu_debug: <<<<<< POST library record will-greenleaf:K562_CRISPRi_CTCF_Growth_T21_R1.Library To DCC with URL https://www.encodeproject.org/library and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRi_CTCF_Growth_T21_R1.Library" ], "award": "/awards/UM1HG009436/", "biosample": "will-greenleaf:K562_CRISPRi_CTCF_Growth_T21_R1.Biosample", "extraction_method": "QIAGEN DNeasy Blood & Tissue Kit", "lab": "/labs/will-greenleaf/", "nucleic_acid_term_name": "DNA" } 2021-09-20 18:01:23,174:eu_debug: Success. 2021-09-20 18:01:23,174:eu_debug: IN post(). 2021-09-20 18:01:23,175:eu_debug: <<<<<< POST library record will-greenleaf:K562_CRISPRi_CTCF_Growth_T21_R2.Library To DCC with URL https://www.encodeproject.org/library and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRi_CTCF_Growth_T21_R2.Library" ], "award": "/awards/UM1HG009436/", "biosample": "will-greenleaf:K562_CRISPRi_CTCF_Growth_T21_R2.Biosample", "extraction_method": "QIAGEN DNeasy Blood & Tissue Kit", "lab": "/labs/will-greenleaf/", "nucleic_acid_term_name": "DNA" } 2021-09-20 18:01:23,294:eu_debug: Success. 2021-09-20 18:01:23,294:eu_debug: IN post(). 2021-09-20 18:01:23,295:eu_debug: <<<<<< POST library record will-greenleaf:K562_CRISPRk_CTCF_Growth_T7_R1.Library To DCC with URL https://www.encodeproject.org/library and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF_Growth_T7_R1.Library" ], "award": "/awards/UM1HG009436/", "biosample": "will-greenleaf:K562_CRISPRk_CTCF_Growth_T7_R1.Biosample", "extraction_method": "QIAGEN DNeasy Blood & Tissue Kit", "lab": "/labs/will-greenleaf/", "nucleic_acid_term_name": "DNA" } 2021-09-20 18:01:23,432:eu_debug: Success. 2021-09-20 18:01:23,432:eu_debug: IN post(). 2021-09-20 18:01:23,433:eu_debug: <<<<<< POST library record will-greenleaf:K562_CRISPRk_CTCF_Growth_T7_R2.Library To DCC with URL https://www.encodeproject.org/library and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF_Growth_T7_R2.Library" ], "award": "/awards/UM1HG009436/", "biosample": "will-greenleaf:K562_CRISPRk_CTCF_Growth_T7_R2.Biosample", "extraction_method": "QIAGEN DNeasy Blood & Tissue Kit", "lab": "/labs/will-greenleaf/", "nucleic_acid_term_name": "DNA" } 2021-09-20 18:01:23,554:eu_debug: Success. 2021-09-20 18:01:23,555:eu_debug: IN post(). 2021-09-20 18:01:23,556:eu_debug: <<<<<< POST library record will-greenleaf:K562_CRISPRk_CTCF_Growth_T21_R1.Library To DCC with URL https://www.encodeproject.org/library and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF_Growth_T21_R1.Library" ], "award": "/awards/UM1HG009436/", "biosample": "will-greenleaf:K562_CRISPRk_CTCF_Growth_T21_R1.Biosample", "extraction_method": "QIAGEN DNeasy Blood & Tissue Kit", "lab": "/labs/will-greenleaf/", "nucleic_acid_term_name": "DNA" } 2021-09-20 18:01:23,680:eu_debug: Success. 2021-09-20 18:01:23,680:eu_debug: IN post(). 2021-09-20 18:01:23,681:eu_debug: <<<<<< POST library record will-greenleaf:K562_CRISPRk_CTCF_Growth_T21_R2.Library To DCC with URL https://www.encodeproject.org/library and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF_Growth_T21_R2.Library" ], "award": "/awards/UM1HG009436/", "biosample": "will-greenleaf:K562_CRISPRk_CTCF_Growth_T21_R2.Biosample", "extraction_method": "QIAGEN DNeasy Blood & Tissue Kit", "lab": "/labs/will-greenleaf/", "nucleic_acid_term_name": "DNA" } 2021-09-20 18:01:23,806:eu_debug: Success. 2021-09-20 18:01:32,182:eu_debug: submission=False: In non-submission mode. 2021-09-20 18:01:32,505:eu_debug: submission=True: In submission mode. 2021-09-20 18:01:33,004:eu_debug: IN post(). 2021-09-20 18:01:33,005:eu_debug: <<<<<< POST replicate record will-greenleaf:K562_CRISPRa_CTCF_Growth_T7_R1.Replicate To DCC with URL https://www.encodeproject.org/replicate and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRa_CTCF_Growth_T7_R1.Replicate" ], "biological_replicate_number": 1, "experiment": "will-greenleaf:K562_CRISPRa_CTCF_Growth_T7", "library": "will-greenleaf:K562_CRISPRa_CTCF_Growth_T7_R1.Library", "technical_replicate_number": 1 } 2021-09-20 18:01:33,151:eu_debug: Failed to POST will-greenleaf:K562_CRISPRa_CTCF_Growth_T7_R1.Replicate 2021-09-20 18:01:33,152:eu_debug: <<<<<< DCC POST RESPONSE: 2021-09-20 18:01:33,152:eu_debug: { "@type": [ "ValidationFailure", "Error" ], "code": 422, "description": "Failed validation", "errors": [ { "description": "'will-greenleaf:K562_CRISPRa_CTCF_Growth_T7' not found", "location": "body", "name": [ "experiment" ] } ], "status": "error", "title": "Unprocessable Entity" } 2021-09-20 18:02:46,677:eu_debug: submission=False: In non-submission mode. 2021-09-20 18:02:47,017:eu_debug: submission=True: In submission mode. 2021-09-20 18:02:47,513:eu_debug: IN post(). 2021-09-20 18:02:47,514:eu_debug: <<<<<< POST functional_characterization_experiment record will-greenleaf:K562_CRISPRa_CTCF_Growth_T7 To DCC with URL https://www.encodeproject.org/functional_characterization_experiment and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRa_CTCF_Growth_T7" ], "assay_term_name": "CRISPR screen", "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "description": "Functional characterization series for tiling, dCas9-VPR/CRISPRa proliferation screens at CTCF motifs around essential genes", "elements_cloning": "will-greenleaf:CRISPR_CTCF_Growth.Plasmid", "elements_references": [ "will-greenleaf:K562_CRISPR_CTCF_Growth.Reference" ], "lab": "/labs/will-greenleaf/", "replicates": [ "will-greenleaf:K562_CRISPRa_CTCF_Growth_T7_R1.Replicate", "will-greenleaf:K562_CRISPRa_CTCF_Growth_T7_R2.Replicate" ] } 2021-09-20 18:02:47,632:eu_debug: Failed to POST will-greenleaf:K562_CRISPRa_CTCF_Growth_T7 2021-09-20 18:02:47,632:eu_debug: <<<<<< DCC POST RESPONSE: 2021-09-20 18:02:47,633:eu_debug: { "@type": [ "ValidationFailure", "Error" ], "code": 422, "description": "Failed validation", "errors": [ { "description": "'will-greenleaf:K562_CRISPR_CTCF_Growth.Reference' not found", "location": "body", "name": [ "elements_references", 0 ] }, { "description": "'will-greenleaf:K562_CRISPRa_CTCF_Growth_T7_R1.Replicate' not found", "location": "body", "name": [ "replicates", 0 ] }, { "description": "'will-greenleaf:K562_CRISPRa_CTCF_Growth_T7_R2.Replicate' not found", "location": "body", "name": [ "replicates", 1 ] } ], "status": "error", "title": "Unprocessable Entity" } 2021-09-20 18:03:21,054:eu_debug: submission=False: In non-submission mode. 2021-09-20 18:03:21,357:eu_debug: submission=True: In submission mode. 2021-09-20 18:03:21,851:eu_debug: IN post(). 2021-09-20 18:03:21,851:eu_debug: <<<<<< POST reference record will-greenleaf:K562_CRISPR_CTCF_Growth.Reference To DCC with URL https://www.encodeproject.org/reference and this payload: { "aliases": [ "will-greenleaf:K562_CRISPR_CTCF_Growth.Reference" ], "award": "/awards/UM1HG009436/", "examined_loci": [ "/genes/10664" ], "lab": "/labs/will-greenleaf/", "reference_type": "functional elements" } 2021-09-20 18:03:21,977:eu_debug: Success. 2021-09-20 18:03:32,695:eu_debug: submission=False: In non-submission mode. 2021-09-20 18:03:33,000:eu_debug: submission=True: In submission mode. 2021-09-20 18:03:33,496:eu_debug: IN post(). 2021-09-20 18:03:33,501:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPR_CTCF_Growth.Reference.File To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPR_CTCF_Growth.Reference.File" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPR_CTCF_Growth.Reference", "file_format": "csv", "file_size": 1742023, "lab": "/labs/will-greenleaf/", "md5sum": "79b839eae7d79ac25b0891972ccb0dab", "output_type": "elements reference", "submitted_file_name": "hg38_processed_ctcf_library_reference.csv" } 2021-09-20 18:03:33,961:eu_debug: Success. 2021-09-20 18:03:33,961:eu_debug: IN upload_file() 2021-09-20 18:03:33,962:eu_debug: Attempting to generate new file upload credentials 2021-09-20 18:03:34,410:eu_debug: Success: upload credentials for 'ENCFF271CBI' regenerated. 2021-09-20 18:03:34,411:eu_debug: >>>>>>GET ENCFF271CBI From DCC with URL https://www.encodeproject.org/ENCFF271CBI/?format=json&datastore=database 2021-09-20 18:03:34,596:eu_debug: Running command 'aws s3 cp hg38_processed_ctcf_library_reference.csv s3://encode-files/2021/09/21/718b7f6e-c7d4-43d8-8d63-61f1a41ed4ed/ENCFF271CBI.csv'. 2021-09-20 18:03:35,980:eu_debug: AWS upload successful. 2021-09-20 18:03:44,542:eu_debug: submission=False: In non-submission mode. 2021-09-20 18:03:44,901:eu_debug: submission=True: In submission mode. 2021-09-20 18:03:45,387:eu_debug: IN post(). 2021-09-20 18:03:45,388:eu_debug: <<<<<< POST functional_characterization_experiment record will-greenleaf:K562_CRISPRa_CTCF_Growth_T7 To DCC with URL https://www.encodeproject.org/functional_characterization_experiment and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRa_CTCF_Growth_T7" ], "assay_term_name": "CRISPR screen", "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "description": "Functional characterization series for tiling, dCas9-VPR/CRISPRa proliferation screens at CTCF motifs around essential genes", "elements_cloning": "will-greenleaf:CRISPR_CTCF_Growth.Plasmid", "elements_references": [ "will-greenleaf:K562_CRISPR_CTCF_Growth.Reference" ], "lab": "/labs/will-greenleaf/", "replicates": [ "will-greenleaf:K562_CRISPRa_CTCF_Growth_T7_R1.Replicate", "will-greenleaf:K562_CRISPRa_CTCF_Growth_T7_R2.Replicate" ] } 2021-09-20 18:03:45,511:eu_debug: Failed to POST will-greenleaf:K562_CRISPRa_CTCF_Growth_T7 2021-09-20 18:03:45,511:eu_debug: <<<<<< DCC POST RESPONSE: 2021-09-20 18:03:45,511:eu_debug: { "@type": [ "ValidationFailure", "Error" ], "code": 422, "description": "Failed validation", "errors": [ { "description": "'will-greenleaf:K562_CRISPRa_CTCF_Growth_T7_R1.Replicate' not found", "location": "body", "name": [ "replicates", 0 ] }, { "description": "'will-greenleaf:K562_CRISPRa_CTCF_Growth_T7_R2.Replicate' not found", "location": "body", "name": [ "replicates", 1 ] } ], "status": "error", "title": "Unprocessable Entity" } 2021-09-20 18:04:39,070:eu_debug: submission=False: In non-submission mode. 2021-09-20 18:04:39,370:eu_debug: submission=True: In submission mode. 2021-09-20 18:04:39,859:eu_debug: IN post(). 2021-09-20 18:04:39,859:eu_debug: <<<<<< POST replicate record will-greenleaf:K562_CRISPRa_CTCF_Growth_T7_R1.Replicate To DCC with URL https://www.encodeproject.org/replicate and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRa_CTCF_Growth_T7_R1.Replicate" ], "biological_replicate_number": 1, "experiment": "will-greenleaf:K562_CRISPRa_CTCF_Growth_T7", "library": "will-greenleaf:K562_CRISPRa_CTCF_Growth_T7_R1.Library", "technical_replicate_number": 1 } 2021-09-20 18:04:39,966:eu_debug: Failed to POST will-greenleaf:K562_CRISPRa_CTCF_Growth_T7_R1.Replicate 2021-09-20 18:04:39,967:eu_debug: <<<<<< DCC POST RESPONSE: 2021-09-20 18:04:39,967:eu_debug: { "@type": [ "ValidationFailure", "Error" ], "code": 422, "description": "Failed validation", "errors": [ { "description": "'will-greenleaf:K562_CRISPRa_CTCF_Growth_T7' not found", "location": "body", "name": [ "experiment" ] } ], "status": "error", "title": "Unprocessable Entity" } 2021-09-20 18:09:05,597:eu_debug: submission=False: In non-submission mode. 2021-09-20 18:09:05,954:eu_debug: submission=True: In submission mode. 2021-09-20 18:09:06,453:eu_debug: IN post(). 2021-09-20 18:09:06,453:eu_debug: <<<<<< POST functional_characterization_experiment record will-greenleaf:K562_CRISPRa_CTCF_Growth_T7 To DCC with URL https://www.encodeproject.org/functional_characterization_experiment and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRa_CTCF_Growth_T7" ], "assay_term_name": "CRISPR screen", "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "description": "\"Functional characterization series for tiling, dCas9-VPR/CRISPRa proliferation screens at CTCF motifs around essential genes\"", "elements_cloning": "will-greenleaf:CRISPR_CTCF_Growth.Plasmid", "elements_references": [ "will-greenleaf:K562_CRISPR_CTCF_Growth.Reference" ], "lab": "/labs/will-greenleaf/" } 2021-09-20 18:09:06,584:eu_debug: Success. 2021-09-20 18:09:06,584:eu_debug: IN post(). 2021-09-20 18:09:06,585:eu_debug: <<<<<< POST functional_characterization_experiment record will-greenleaf:K562_CRISPRa_CTCF_Growth_T21 To DCC with URL https://www.encodeproject.org/functional_characterization_experiment and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRa_CTCF_Growth_T21" ], "assay_term_name": "CRISPR screen", "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "description": "\"Functional characterization series for tiling, dCas9-VPR/CRISPRa proliferation screens at CTCF motifs around essential genes\"", "elements_cloning": "will-greenleaf:CRISPR_CTCF_Growth.Plasmid", "elements_references": [ "will-greenleaf:K562_CRISPR_CTCF_Growth.Reference" ], "lab": "/labs/will-greenleaf/" } 2021-09-20 18:09:06,714:eu_debug: Success. 2021-09-20 18:09:06,714:eu_debug: IN post(). 2021-09-20 18:09:06,715:eu_debug: <<<<<< POST functional_characterization_experiment record will-greenleaf:K562_CRISPRd_CTCF_Growth_T7 To DCC with URL https://www.encodeproject.org/functional_characterization_experiment and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRd_CTCF_Growth_T7" ], "assay_term_name": "CRISPR screen", "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "description": "\"Functional characterization series for tiling, dCas9/CRISPRd proliferation screens at CTCF motifs around essential genes\"", "elements_cloning": "will-greenleaf:CRISPR_CTCF_Growth.Plasmid", "elements_references": [ "will-greenleaf:K562_CRISPR_CTCF_Growth.Reference" ], "lab": "/labs/will-greenleaf/" } 2021-09-20 18:09:06,846:eu_debug: Success. 2021-09-20 18:09:06,846:eu_debug: IN post(). 2021-09-20 18:09:06,847:eu_debug: <<<<<< POST functional_characterization_experiment record will-greenleaf:K562_CRISPRd_CTCF_Growth_T21 To DCC with URL https://www.encodeproject.org/functional_characterization_experiment and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRd_CTCF_Growth_T21" ], "assay_term_name": "CRISPR screen", "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "description": "\"Functional characterization series for tiling, dCas9/CRISPRd proliferation screens at CTCF motifs around essential genes\"", "elements_cloning": "will-greenleaf:CRISPR_CTCF_Growth.Plasmid", "elements_references": [ "will-greenleaf:K562_CRISPR_CTCF_Growth.Reference" ], "lab": "/labs/will-greenleaf/" } 2021-09-20 18:09:06,979:eu_debug: Success. 2021-09-20 18:09:06,979:eu_debug: IN post(). 2021-09-20 18:09:06,980:eu_debug: <<<<<< POST functional_characterization_experiment record will-greenleaf:K562_CRISPRi_CTCF_Growth_T7 To DCC with URL https://www.encodeproject.org/functional_characterization_experiment and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRi_CTCF_Growth_T7" ], "assay_term_name": "CRISPR screen", "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "description": "\"Functional characterization series for tiling, dCas9-KRAB/CRISPRi proliferation screens at CTCF motifs around essential genes\"", "elements_cloning": "will-greenleaf:CRISPR_CTCF_Growth.Plasmid", "elements_references": [ "will-greenleaf:K562_CRISPR_CTCF_Growth.Reference" ], "lab": "/labs/will-greenleaf/" } 2021-09-20 18:09:07,112:eu_debug: Success. 2021-09-20 18:09:07,113:eu_debug: IN post(). 2021-09-20 18:09:07,114:eu_debug: <<<<<< POST functional_characterization_experiment record will-greenleaf:K562_CRISPRi_CTCF_Growth_T21 To DCC with URL https://www.encodeproject.org/functional_characterization_experiment and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRi_CTCF_Growth_T21" ], "assay_term_name": "CRISPR screen", "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "description": "\"Functional characterization series for tiling, dCas9-KRAB/CRISPRi proliferation screens at CTCF motifs around essential genes\"", "elements_cloning": "will-greenleaf:CRISPR_CTCF_Growth.Plasmid", "elements_references": [ "will-greenleaf:K562_CRISPR_CTCF_Growth.Reference" ], "lab": "/labs/will-greenleaf/" } 2021-09-20 18:09:07,242:eu_debug: Success. 2021-09-20 18:09:07,242:eu_debug: IN post(). 2021-09-20 18:09:07,243:eu_debug: <<<<<< POST functional_characterization_experiment record will-greenleaf:K562_CRISPRk_CTCF_Growth_T7 To DCC with URL https://www.encodeproject.org/functional_characterization_experiment and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF_Growth_T7" ], "assay_term_name": "CRISPR screen", "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "description": "\"Functional characterization series for tiling, Cas9/CRISPRk proliferation screens at CTCF motifs around essential genes\"", "elements_cloning": "will-greenleaf:CRISPR_CTCF_Growth.Plasmid", "elements_references": [ "will-greenleaf:K562_CRISPR_CTCF_Growth.Reference" ], "lab": "/labs/will-greenleaf/" } 2021-09-20 18:09:07,371:eu_debug: Success. 2021-09-20 18:09:07,372:eu_debug: IN post(). 2021-09-20 18:09:07,372:eu_debug: <<<<<< POST functional_characterization_experiment record will-greenleaf:K562_CRISPRk_CTCF_Growth_T21 To DCC with URL https://www.encodeproject.org/functional_characterization_experiment and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF_Growth_T21" ], "assay_term_name": "CRISPR screen", "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "description": "\"Functional characterization series for tiling, Cas9/CRISPRk proliferation screens at CTCF motifs around essential genes\"", "elements_cloning": "will-greenleaf:CRISPR_CTCF_Growth.Plasmid", "elements_references": [ "will-greenleaf:K562_CRISPR_CTCF_Growth.Reference" ], "lab": "/labs/will-greenleaf/" } 2021-09-20 18:09:07,516:eu_debug: Success. 2021-09-20 18:09:19,876:eu_debug: submission=False: In non-submission mode. 2021-09-20 18:09:20,241:eu_debug: submission=True: In submission mode. 2021-09-20 18:09:20,733:eu_debug: IN post(). 2021-09-20 18:09:20,733:eu_debug: <<<<<< POST functional_characterization_experiment record will-greenleaf:K562_CRISPRa_CTCF_Growth_T7 To DCC with URL https://www.encodeproject.org/functional_characterization_experiment and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRa_CTCF_Growth_T7" ], "assay_term_name": "CRISPR screen", "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "description": "\"Functional characterization series for tiling, dCas9-VPR/CRISPRa proliferation screens at CTCF motifs around essential genes\"", "elements_cloning": "will-greenleaf:CRISPR_CTCF_Growth.Plasmid", "elements_references": [ "will-greenleaf:K562_CRISPR_CTCF_Growth.Reference" ], "lab": "/labs/will-greenleaf/" } 2021-09-20 18:09:20,862:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'will-greenleaf:K562_CRISPRa_CTCF_Growth_T7')]"} 2021-09-20 18:09:20,862:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRa_CTCF_Growth_T7 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRa_CTCF_Growth_T7/?format=json&datastore=database 2021-09-20 18:09:21,084:eu_debug: Will not POST 'will-greenleaf:K562_CRISPRa_CTCF_Growth_T7' since it already exists with aliases '['will-greenleaf:K562_CRISPRa_CTCF_Growth_T7']'. 2021-09-20 18:09:21,085:eu_debug: IN post(). 2021-09-20 18:09:21,085:eu_debug: <<<<<< POST functional_characterization_experiment record will-greenleaf:K562_CRISPRa_CTCF_Growth_T21 To DCC with URL https://www.encodeproject.org/functional_characterization_experiment and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRa_CTCF_Growth_T21" ], "assay_term_name": "CRISPR screen", "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "description": "\"Functional characterization series for tiling, dCas9-VPR/CRISPRa proliferation screens at CTCF motifs around essential genes\"", "elements_cloning": "will-greenleaf:CRISPR_CTCF_Growth.Plasmid", "elements_references": [ "will-greenleaf:K562_CRISPR_CTCF_Growth.Reference" ], "lab": "/labs/will-greenleaf/" } 2021-09-20 18:09:21,212:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'will-greenleaf:K562_CRISPRa_CTCF_Growth_T21')]"} 2021-09-20 18:09:21,212:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRa_CTCF_Growth_T21 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRa_CTCF_Growth_T21/?format=json&datastore=database 2021-09-20 18:09:21,435:eu_debug: Will not POST 'will-greenleaf:K562_CRISPRa_CTCF_Growth_T21' since it already exists with aliases '['will-greenleaf:K562_CRISPRa_CTCF_Growth_T21']'. 2021-09-20 18:09:21,435:eu_debug: IN post(). 2021-09-20 18:09:21,436:eu_debug: <<<<<< POST functional_characterization_experiment record will-greenleaf:K562_CRISPRd_CTCF_Growth_T7 To DCC with URL https://www.encodeproject.org/functional_characterization_experiment and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRd_CTCF_Growth_T7" ], "assay_term_name": "CRISPR screen", "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "description": "\"Functional characterization series for tiling, dCas9/CRISPRd proliferation screens at CTCF motifs around essential genes\"", "elements_cloning": "will-greenleaf:CRISPR_CTCF_Growth.Plasmid", "elements_references": [ "will-greenleaf:K562_CRISPR_CTCF_Growth.Reference" ], "lab": "/labs/will-greenleaf/" } 2021-09-20 18:09:21,560:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'will-greenleaf:K562_CRISPRd_CTCF_Growth_T7')]"} 2021-09-20 18:09:21,561:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRd_CTCF_Growth_T7 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRd_CTCF_Growth_T7/?format=json&datastore=database 2021-09-20 18:09:21,786:eu_debug: Will not POST 'will-greenleaf:K562_CRISPRd_CTCF_Growth_T7' since it already exists with aliases '['will-greenleaf:K562_CRISPRd_CTCF_Growth_T7']'. 2021-09-20 18:09:21,786:eu_debug: IN post(). 2021-09-20 18:09:21,787:eu_debug: <<<<<< POST functional_characterization_experiment record will-greenleaf:K562_CRISPRd_CTCF_Growth_T21 To DCC with URL https://www.encodeproject.org/functional_characterization_experiment and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRd_CTCF_Growth_T21" ], "assay_term_name": "CRISPR screen", "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "description": "\"Functional characterization series for tiling, dCas9/CRISPRd proliferation screens at CTCF motifs around essential genes\"", "elements_cloning": "will-greenleaf:CRISPR_CTCF_Growth.Plasmid", "elements_references": [ "will-greenleaf:K562_CRISPR_CTCF_Growth.Reference" ], "lab": "/labs/will-greenleaf/" } 2021-09-20 18:09:21,915:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'will-greenleaf:K562_CRISPRd_CTCF_Growth_T21')]"} 2021-09-20 18:09:21,915:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRd_CTCF_Growth_T21 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRd_CTCF_Growth_T21/?format=json&datastore=database 2021-09-20 18:09:22,143:eu_debug: Will not POST 'will-greenleaf:K562_CRISPRd_CTCF_Growth_T21' since it already exists with aliases '['will-greenleaf:K562_CRISPRd_CTCF_Growth_T21']'. 2021-09-20 18:09:22,144:eu_debug: IN post(). 2021-09-20 18:09:22,144:eu_debug: <<<<<< POST functional_characterization_experiment record will-greenleaf:K562_CRISPRi_CTCF_Growth_T7 To DCC with URL https://www.encodeproject.org/functional_characterization_experiment and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRi_CTCF_Growth_T7" ], "assay_term_name": "CRISPR screen", "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "description": "\"Functional characterization series for tiling, dCas9-KRAB/CRISPRi proliferation screens at CTCF motifs around essential genes\"", "elements_cloning": "will-greenleaf:CRISPR_CTCF_Growth.Plasmid", "elements_references": [ "will-greenleaf:K562_CRISPR_CTCF_Growth.Reference" ], "lab": "/labs/will-greenleaf/" } 2021-09-20 18:09:22,273:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'will-greenleaf:K562_CRISPRi_CTCF_Growth_T7')]"} 2021-09-20 18:09:22,274:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRi_CTCF_Growth_T7 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRi_CTCF_Growth_T7/?format=json&datastore=database 2021-09-20 18:09:22,490:eu_debug: Will not POST 'will-greenleaf:K562_CRISPRi_CTCF_Growth_T7' since it already exists with aliases '['will-greenleaf:K562_CRISPRi_CTCF_Growth_T7']'. 2021-09-20 18:09:22,490:eu_debug: IN post(). 2021-09-20 18:09:22,491:eu_debug: <<<<<< POST functional_characterization_experiment record will-greenleaf:K562_CRISPRi_CTCF_Growth_T21 To DCC with URL https://www.encodeproject.org/functional_characterization_experiment and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRi_CTCF_Growth_T21" ], "assay_term_name": "CRISPR screen", "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "description": "\"Functional characterization series for tiling, dCas9-KRAB/CRISPRi proliferation screens at CTCF motifs around essential genes\"", "elements_cloning": "will-greenleaf:CRISPR_CTCF_Growth.Plasmid", "elements_references": [ "will-greenleaf:K562_CRISPR_CTCF_Growth.Reference" ], "lab": "/labs/will-greenleaf/" } 2021-09-20 18:09:22,618:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'will-greenleaf:K562_CRISPRi_CTCF_Growth_T21')]"} 2021-09-20 18:09:22,618:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRi_CTCF_Growth_T21 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRi_CTCF_Growth_T21/?format=json&datastore=database 2021-09-20 18:09:22,834:eu_debug: Will not POST 'will-greenleaf:K562_CRISPRi_CTCF_Growth_T21' since it already exists with aliases '['will-greenleaf:K562_CRISPRi_CTCF_Growth_T21']'. 2021-09-20 18:09:22,835:eu_debug: IN post(). 2021-09-20 18:09:22,836:eu_debug: <<<<<< POST functional_characterization_experiment record will-greenleaf:K562_CRISPRk_CTCF_Growth_T7 To DCC with URL https://www.encodeproject.org/functional_characterization_experiment and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF_Growth_T7" ], "assay_term_name": "CRISPR screen", "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "description": "\"Functional characterization series for tiling, Cas9/CRISPRk proliferation screens at CTCF motifs around essential genes\"", "elements_cloning": "will-greenleaf:CRISPR_CTCF_Growth.Plasmid", "elements_references": [ "will-greenleaf:K562_CRISPR_CTCF_Growth.Reference" ], "lab": "/labs/will-greenleaf/" } 2021-09-20 18:09:22,964:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'will-greenleaf:K562_CRISPRk_CTCF_Growth_T7')]"} 2021-09-20 18:09:22,964:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRk_CTCF_Growth_T7 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_CTCF_Growth_T7/?format=json&datastore=database 2021-09-20 18:09:23,179:eu_debug: Will not POST 'will-greenleaf:K562_CRISPRk_CTCF_Growth_T7' since it already exists with aliases '['will-greenleaf:K562_CRISPRk_CTCF_Growth_T7']'. 2021-09-20 18:09:23,180:eu_debug: IN post(). 2021-09-20 18:09:23,180:eu_debug: <<<<<< POST functional_characterization_experiment record will-greenleaf:K562_CRISPRk_CTCF_Growth_T21 To DCC with URL https://www.encodeproject.org/functional_characterization_experiment and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF_Growth_T21" ], "assay_term_name": "CRISPR screen", "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "description": "\"Functional characterization series for tiling, Cas9/CRISPRk proliferation screens at CTCF motifs around essential genes\"", "elements_cloning": "will-greenleaf:CRISPR_CTCF_Growth.Plasmid", "elements_references": [ "will-greenleaf:K562_CRISPR_CTCF_Growth.Reference" ], "lab": "/labs/will-greenleaf/" } 2021-09-20 18:09:23,308:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'will-greenleaf:K562_CRISPRk_CTCF_Growth_T21')]"} 2021-09-20 18:09:23,308:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRk_CTCF_Growth_T21 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_CTCF_Growth_T21/?format=json&datastore=database 2021-09-20 18:09:23,517:eu_debug: Will not POST 'will-greenleaf:K562_CRISPRk_CTCF_Growth_T21' since it already exists with aliases '['will-greenleaf:K562_CRISPRk_CTCF_Growth_T21']'. 2021-09-20 18:11:03,030:eu_debug: submission=False: In non-submission mode. 2021-09-20 18:11:03,338:eu_debug: submission=True: In submission mode. 2021-09-20 18:11:03,829:eu_debug: IN post(). 2021-09-20 18:11:03,829:eu_debug: <<<<<< POST replicate record will-greenleaf:K562_CRISPRa_CTCF_Growth_T7_R1.Replicate To DCC with URL https://www.encodeproject.org/replicate and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRa_CTCF_Growth_T7_R1.Replicate" ], "biological_replicate_number": 1, "experiment": "will-greenleaf:K562_CRISPRa_CTCF_Growth_T7", "library": "will-greenleaf:K562_CRISPRa_CTCF_Growth_T7_R1.Library", "technical_replicate_number": 1 } 2021-09-20 18:11:03,947:eu_debug: Success. 2021-09-20 18:11:03,947:eu_debug: IN post(). 2021-09-20 18:11:03,948:eu_debug: <<<<<< POST replicate record will-greenleaf:K562_CRISPRa_CTCF_Growth_T7_R2.Replicate To DCC with URL https://www.encodeproject.org/replicate and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRa_CTCF_Growth_T7_R2.Replicate" ], "biological_replicate_number": 2, "experiment": "will-greenleaf:K562_CRISPRa_CTCF_Growth_T7", "library": "will-greenleaf:K562_CRISPRa_CTCF_Growth_T7_R2.Library", "technical_replicate_number": 1 } 2021-09-20 18:11:04,069:eu_debug: Success. 2021-09-20 18:11:04,069:eu_debug: IN post(). 2021-09-20 18:11:04,070:eu_debug: <<<<<< POST replicate record will-greenleaf:K562_CRISPRa_CTCF_Growth_T21_R1.Replicate To DCC with URL https://www.encodeproject.org/replicate and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRa_CTCF_Growth_T21_R1.Replicate" ], "biological_replicate_number": 1, "experiment": "will-greenleaf:K562_CRISPRa_CTCF_Growth_T21", "library": "will-greenleaf:K562_CRISPRa_CTCF_Growth_T21_R1.Library", "technical_replicate_number": 1 } 2021-09-20 18:11:04,189:eu_debug: Success. 2021-09-20 18:11:04,189:eu_debug: IN post(). 2021-09-20 18:11:04,190:eu_debug: <<<<<< POST replicate record will-greenleaf:K562_CRISPRa_CTCF_Growth_T21_R2.Replicate To DCC with URL https://www.encodeproject.org/replicate and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRa_CTCF_Growth_T21_R2.Replicate" ], "biological_replicate_number": 2, "experiment": "will-greenleaf:K562_CRISPRa_CTCF_Growth_T21", "library": "will-greenleaf:K562_CRISPRa_CTCF_Growth_T21_R2.Library", "technical_replicate_number": 1 } 2021-09-20 18:11:04,310:eu_debug: Success. 2021-09-20 18:11:04,310:eu_debug: IN post(). 2021-09-20 18:11:04,311:eu_debug: <<<<<< POST replicate record will-greenleaf:K562_CRISPRd_CTCF_Growth_T7_R1.Replicate To DCC with URL https://www.encodeproject.org/replicate and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRd_CTCF_Growth_T7_R1.Replicate" ], "biological_replicate_number": 1, "experiment": "will-greenleaf:K562_CRISPRd_CTCF_Growth_T7", "library": "will-greenleaf:K562_CRISPRd_CTCF_Growth_T7_R1.Library", "technical_replicate_number": 1 } 2021-09-20 18:11:04,425:eu_debug: Success. 2021-09-20 18:11:04,425:eu_debug: IN post(). 2021-09-20 18:11:04,426:eu_debug: <<<<<< POST replicate record will-greenleaf:K562_CRISPRd_CTCF_Growth_T7_R2.Replicate To DCC with URL https://www.encodeproject.org/replicate and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRd_CTCF_Growth_T7_R2.Replicate" ], "biological_replicate_number": 2, "experiment": "will-greenleaf:K562_CRISPRd_CTCF_Growth_T7", "library": "will-greenleaf:K562_CRISPRd_CTCF_Growth_T7_R2.Library", "technical_replicate_number": 1 } 2021-09-20 18:11:04,541:eu_debug: Success. 2021-09-20 18:11:04,542:eu_debug: IN post(). 2021-09-20 18:11:04,542:eu_debug: <<<<<< POST replicate record will-greenleaf:K562_CRISPRd_CTCF_Growth_T21_R1.Replicate To DCC with URL https://www.encodeproject.org/replicate and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRd_CTCF_Growth_T21_R1.Replicate" ], "biological_replicate_number": 1, "experiment": "will-greenleaf:K562_CRISPRd_CTCF_Growth_T21", "library": "will-greenleaf:K562_CRISPRd_CTCF_Growth_T21_R1.Library", "technical_replicate_number": 1 } 2021-09-20 18:11:04,657:eu_debug: Success. 2021-09-20 18:11:04,658:eu_debug: IN post(). 2021-09-20 18:11:04,658:eu_debug: <<<<<< POST replicate record will-greenleaf:K562_CRISPRd_CTCF_Growth_T21_R2.Replicate To DCC with URL https://www.encodeproject.org/replicate and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRd_CTCF_Growth_T21_R2.Replicate" ], "biological_replicate_number": 2, "experiment": "will-greenleaf:K562_CRISPRd_CTCF_Growth_T21", "library": "will-greenleaf:K562_CRISPRd_CTCF_Growth_T21_R2.Library", "technical_replicate_number": 1 } 2021-09-20 18:11:04,773:eu_debug: Success. 2021-09-20 18:11:04,774:eu_debug: IN post(). 2021-09-20 18:11:04,774:eu_debug: <<<<<< POST replicate record will-greenleaf:K562_CRISPRi_CTCF_Growth_T7_R1.Replicate To DCC with URL https://www.encodeproject.org/replicate and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRi_CTCF_Growth_T7_R1.Replicate" ], "biological_replicate_number": 1, "experiment": "will-greenleaf:K562_CRISPRi_CTCF_Growth_T7", "library": "will-greenleaf:K562_CRISPRi_CTCF_Growth_T7_R1.Library", "technical_replicate_number": 1 } 2021-09-20 18:11:04,892:eu_debug: Success. 2021-09-20 18:11:04,893:eu_debug: IN post(). 2021-09-20 18:11:04,893:eu_debug: <<<<<< POST replicate record will-greenleaf:K562_CRISPRi_CTCF_Growth_T7_R2.Replicate To DCC with URL https://www.encodeproject.org/replicate and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRi_CTCF_Growth_T7_R2.Replicate" ], "biological_replicate_number": 2, "experiment": "will-greenleaf:K562_CRISPRi_CTCF_Growth_T7", "library": "will-greenleaf:K562_CRISPRi_CTCF_Growth_T7_R2.Library", "technical_replicate_number": 1 } 2021-09-20 18:11:05,013:eu_debug: Success. 2021-09-20 18:11:05,014:eu_debug: IN post(). 2021-09-20 18:11:05,015:eu_debug: <<<<<< POST replicate record will-greenleaf:K562_CRISPRi_CTCF_Growth_T21_R1.Replicate To DCC with URL https://www.encodeproject.org/replicate and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRi_CTCF_Growth_T21_R1.Replicate" ], "biological_replicate_number": 1, "experiment": "will-greenleaf:K562_CRISPRi_CTCF_Growth_T21", "library": "will-greenleaf:K562_CRISPRi_CTCF_Growth_T21_R1.Library", "technical_replicate_number": 1 } 2021-09-20 18:11:05,134:eu_debug: Success. 2021-09-20 18:11:05,134:eu_debug: IN post(). 2021-09-20 18:11:05,135:eu_debug: <<<<<< POST replicate record will-greenleaf:K562_CRISPRi_CTCF_Growth_T21_R2.Replicate To DCC with URL https://www.encodeproject.org/replicate and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRi_CTCF_Growth_T21_R2.Replicate" ], "biological_replicate_number": 2, "experiment": "will-greenleaf:K562_CRISPRi_CTCF_Growth_T21", "library": "will-greenleaf:K562_CRISPRi_CTCF_Growth_T21_R2.Library", "technical_replicate_number": 1 } 2021-09-20 18:11:05,249:eu_debug: Success. 2021-09-20 18:11:05,249:eu_debug: IN post(). 2021-09-20 18:11:05,250:eu_debug: <<<<<< POST replicate record will-greenleaf:K562_CRISPRk_CTCF_Growth_T7_R1.Replicate To DCC with URL https://www.encodeproject.org/replicate and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF_Growth_T7_R1.Replicate" ], "biological_replicate_number": 1, "experiment": "will-greenleaf:K562_CRISPRk_CTCF_Growth_T7", "library": "will-greenleaf:K562_CRISPRk_CTCF_Growth_T7_R1.Library", "technical_replicate_number": 1 } 2021-09-20 18:11:05,363:eu_debug: Success. 2021-09-20 18:11:05,364:eu_debug: IN post(). 2021-09-20 18:11:05,364:eu_debug: <<<<<< POST replicate record will-greenleaf:K562_CRISPRk_CTCF_Growth_T7_R2.Replicate To DCC with URL https://www.encodeproject.org/replicate and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF_Growth_T7_R2.Replicate" ], "biological_replicate_number": 2, "experiment": "will-greenleaf:K562_CRISPRk_CTCF_Growth_T7", "library": "will-greenleaf:K562_CRISPRk_CTCF_Growth_T7_R2.Library", "technical_replicate_number": 1 } 2021-09-20 18:11:05,483:eu_debug: Success. 2021-09-20 18:11:05,484:eu_debug: IN post(). 2021-09-20 18:11:05,485:eu_debug: <<<<<< POST replicate record will-greenleaf:K562_CRISPRk_CTCF_Growth_T21_R1.Replicate To DCC with URL https://www.encodeproject.org/replicate and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF_Growth_T21_R1.Replicate" ], "biological_replicate_number": 1, "experiment": "will-greenleaf:K562_CRISPRk_CTCF_Growth_T21", "library": "will-greenleaf:K562_CRISPRk_CTCF_Growth_T21_R1.Library", "technical_replicate_number": 1 } 2021-09-20 18:11:05,602:eu_debug: Success. 2021-09-20 18:11:05,602:eu_debug: IN post(). 2021-09-20 18:11:05,603:eu_debug: <<<<<< POST replicate record will-greenleaf:K562_CRISPRk_CTCF_Growth_T21_R2.Replicate To DCC with URL https://www.encodeproject.org/replicate and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF_Growth_T21_R2.Replicate" ], "biological_replicate_number": 2, "experiment": "will-greenleaf:K562_CRISPRk_CTCF_Growth_T21", "library": "will-greenleaf:K562_CRISPRk_CTCF_Growth_T21_R2.Library", "technical_replicate_number": 1 } 2021-09-20 18:11:05,718:eu_debug: Success. 2021-09-20 18:11:35,299:eu_debug: submission=False: In non-submission mode. 2021-09-20 18:11:35,606:eu_debug: submission=True: In submission mode. 2021-09-20 18:11:36,098:eu_debug: IN patch() 2021-09-20 18:11:36,098:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRa_CTCF_Growth_T7 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRa_CTCF_Growth_T7/?format=json&datastore=database&frame=edit 2021-09-20 18:11:36,219:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRa_CTCF_Growth_T7 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRa_CTCF_Growth_T7 and this payload: { "replicates": [ "289b191c-2df2-43ef-bd44-bfeefac4115d", "will-greenleaf:K562_CRISPRa_CTCF_Growth_T7_R1.Replicate", "will-greenleaf:K562_CRISPRa_CTCF_Growth_T7_R2.Replicate", "85881c6e-fea4-45aa-b5d0-4288761669da" ] } 2021-09-20 18:11:36,885:eu_debug: Success. 2021-09-20 18:11:36,886:eu_debug: IN patch() 2021-09-20 18:11:36,886:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRa_CTCF_Growth_T21 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRa_CTCF_Growth_T21/?format=json&datastore=database&frame=edit 2021-09-20 18:11:37,001:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRa_CTCF_Growth_T21 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRa_CTCF_Growth_T21 and this payload: { "replicates": [ "will-greenleaf:K562_CRISPRa_CTCF_Growth_T21_R1.Replicate", "031e45a4-bb8c-4a14-a0ef-68e7e0709121", "will-greenleaf:K562_CRISPRa_CTCF_Growth_T21_R2.Replicate", "a71c9481-aab3-415c-b39c-c3be03085e08" ] } 2021-09-20 18:11:37,654:eu_debug: Success. 2021-09-20 18:11:37,655:eu_debug: IN patch() 2021-09-20 18:11:37,655:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRd_CTCF_Growth_T7 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRd_CTCF_Growth_T7/?format=json&datastore=database&frame=edit 2021-09-20 18:11:37,776:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRd_CTCF_Growth_T7 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRd_CTCF_Growth_T7 and this payload: { "replicates": [ "will-greenleaf:K562_CRISPRd_CTCF_Growth_T7_R1.Replicate", "will-greenleaf:K562_CRISPRd_CTCF_Growth_T7_R2.Replicate", "27afbaae-83ca-4f18-ae73-6127b6c078b4", "44fad241-b0d9-4c64-9b1a-96e31316d59f" ] } 2021-09-20 18:11:38,110:eu_debug: Success. 2021-09-20 18:11:38,110:eu_debug: IN patch() 2021-09-20 18:11:38,111:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRd_CTCF_Growth_T21 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRd_CTCF_Growth_T21/?format=json&datastore=database&frame=edit 2021-09-20 18:11:38,227:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRd_CTCF_Growth_T21 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRd_CTCF_Growth_T21 and this payload: { "replicates": [ "will-greenleaf:K562_CRISPRd_CTCF_Growth_T21_R1.Replicate", "0848ddd4-a0f3-4b67-9acd-ba9a44cdcdc3", "90586b44-9cad-4a50-867b-e9c172282c80", "will-greenleaf:K562_CRISPRd_CTCF_Growth_T21_R2.Replicate" ] } 2021-09-20 18:11:38,569:eu_debug: Success. 2021-09-20 18:11:38,570:eu_debug: IN patch() 2021-09-20 18:11:38,570:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRi_CTCF_Growth_T7 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRi_CTCF_Growth_T7/?format=json&datastore=database&frame=edit 2021-09-20 18:11:38,681:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRi_CTCF_Growth_T7 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRi_CTCF_Growth_T7 and this payload: { "replicates": [ "will-greenleaf:K562_CRISPRi_CTCF_Growth_T7_R1.Replicate", "d4e8eeb5-1b18-4592-8c80-a3e6c3e3dea0", "cdf95caf-5fed-4d93-adeb-347d9977aa3d", "will-greenleaf:K562_CRISPRi_CTCF_Growth_T7_R2.Replicate" ] } 2021-09-20 18:11:39,329:eu_debug: Success. 2021-09-20 18:11:39,330:eu_debug: IN patch() 2021-09-20 18:11:39,330:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRi_CTCF_Growth_T21 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRi_CTCF_Growth_T21/?format=json&datastore=database&frame=edit 2021-09-20 18:11:39,450:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRi_CTCF_Growth_T21 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRi_CTCF_Growth_T21 and this payload: { "replicates": [ "will-greenleaf:K562_CRISPRi_CTCF_Growth_T21_R1.Replicate", "8cf9cdaa-8faf-4af0-9c66-70d1162771eb", "72a8b2e9-ada5-4c50-a737-43ed95516ac6", "will-greenleaf:K562_CRISPRi_CTCF_Growth_T21_R2.Replicate" ] } 2021-09-20 18:11:39,780:eu_debug: Success. 2021-09-20 18:11:39,781:eu_debug: IN patch() 2021-09-20 18:11:39,781:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRk_CTCF_Growth_T7 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_CTCF_Growth_T7/?format=json&datastore=database&frame=edit 2021-09-20 18:11:39,894:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRk_CTCF_Growth_T7 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_CTCF_Growth_T7 and this payload: { "replicates": [ "d377bc9f-59d8-488f-bc4e-663db6dca742", "34dfdd2e-2774-40ae-96f2-3966b4d08025", "will-greenleaf:K562_CRISPRk_CTCF_Growth_T7_R2.Replicate", "will-greenleaf:K562_CRISPRk_CTCF_Growth_T7_R1.Replicate" ] } 2021-09-20 18:11:40,517:eu_debug: Success. 2021-09-20 18:11:40,518:eu_debug: IN patch() 2021-09-20 18:11:40,518:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRk_CTCF_Growth_T21 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_CTCF_Growth_T21/?format=json&datastore=database&frame=edit 2021-09-20 18:11:40,635:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRk_CTCF_Growth_T21 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_CTCF_Growth_T21 and this payload: { "replicates": [ "will-greenleaf:K562_CRISPRk_CTCF_Growth_T21_R1.Replicate", "will-greenleaf:K562_CRISPRk_CTCF_Growth_T21_R2.Replicate", "8e8f4b5f-2fbd-4545-9c9b-c29cb1259f56", "0e292fbc-c1dc-481d-baba-2276a734e39e" ] } 2021-09-20 18:11:41,311:eu_debug: Success. 2021-09-20 18:12:08,315:eu_debug: submission=False: In non-submission mode. 2021-09-20 18:12:08,618:eu_debug: submission=True: In submission mode. 2021-09-20 18:12:09,109:eu_debug: IN post(). 2021-09-20 18:12:09,116:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPRa_CTCF_Growth_T7_R1.Guide_Quantifications To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRa_CTCF_Growth_T7_R1.Guide_Quantifications" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRa_CTCF_Growth_T7", "derived_from": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T0_R1.fastq.gz" ], "file_format": "tsv", "file_size": 2637048, "lab": "/labs/will-greenleaf/", "md5sum": "bd866314169ad7f86027799f079e7811", "output_type": "guide quantifications", "submitted_file_name": "guide_quantification_T7_A1_CTCF_counts.tsv" } 2021-09-20 18:12:09,772:eu_debug: Success. 2021-09-20 18:12:09,772:eu_debug: IN upload_file() 2021-09-20 18:12:09,772:eu_debug: Attempting to generate new file upload credentials 2021-09-20 18:12:10,431:eu_debug: Success: upload credentials for 'ENCFF737IVX' regenerated. 2021-09-20 18:12:10,432:eu_debug: >>>>>>GET ENCFF737IVX From DCC with URL https://www.encodeproject.org/ENCFF737IVX/?format=json&datastore=database 2021-09-20 18:12:11,337:eu_debug: Running command 'aws s3 cp guide_quantification_T7_A1_CTCF_counts.tsv s3://encode-files/2021/09/21/873710e4-e5b3-4c8b-81dc-801547b368e9/ENCFF737IVX.tsv'. 2021-09-20 18:12:12,441:eu_debug: AWS upload successful. 2021-09-20 18:12:12,442:eu_debug: IN post(). 2021-09-20 18:12:12,455:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPRa_CTCF_Growth_T7_R2.Guide_Quantifications To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRa_CTCF_Growth_T7_R2.Guide_Quantifications" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRa_CTCF_Growth_T7", "derived_from": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T0_R2.fastq.gz" ], "file_format": "tsv", "file_size": 2637407, "lab": "/labs/will-greenleaf/", "md5sum": "c024b10cef802a721620eedba56a4c64", "output_type": "guide quantifications", "submitted_file_name": "guide_quantification_T7_A2_CTCF_counts.tsv" } 2021-09-20 18:12:13,120:eu_debug: Success. 2021-09-20 18:12:13,120:eu_debug: IN upload_file() 2021-09-20 18:12:13,120:eu_debug: Attempting to generate new file upload credentials 2021-09-20 18:12:13,796:eu_debug: Success: upload credentials for 'ENCFF284NXC' regenerated. 2021-09-20 18:12:13,796:eu_debug: >>>>>>GET ENCFF284NXC From DCC with URL https://www.encodeproject.org/ENCFF284NXC/?format=json&datastore=database 2021-09-20 18:12:14,384:eu_debug: Running command 'aws s3 cp guide_quantification_T7_A2_CTCF_counts.tsv s3://encode-files/2021/09/21/f0a1aa43-fe86-4f3b-876b-553f1a3939bd/ENCFF284NXC.tsv'. 2021-09-20 18:12:15,427:eu_debug: AWS upload successful. 2021-09-20 18:12:15,429:eu_debug: IN post(). 2021-09-20 18:12:15,441:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPRa_CTCF_Growth_T21_R1.Guide_Quantifications To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRa_CTCF_Growth_T21_R1.Guide_Quantifications" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRa_CTCF_Growth_T21", "derived_from": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T14_Rep1.fastq.gz" ], "file_format": "tsv", "file_size": 2634926, "lab": "/labs/will-greenleaf/", "md5sum": "fba2bb3bc0a24a0a132db96a3cfad0a5", "output_type": "guide quantifications", "submitted_file_name": "guide_quantification_T21_A1_CTCF_counts.tsv" } 2021-09-20 18:12:16,097:eu_debug: Success. 2021-09-20 18:12:16,097:eu_debug: IN upload_file() 2021-09-20 18:12:16,097:eu_debug: Attempting to generate new file upload credentials 2021-09-20 18:12:16,770:eu_debug: Success: upload credentials for 'ENCFF448CGM' regenerated. 2021-09-20 18:12:16,770:eu_debug: >>>>>>GET ENCFF448CGM From DCC with URL https://www.encodeproject.org/ENCFF448CGM/?format=json&datastore=database 2021-09-20 18:12:17,367:eu_debug: Running command 'aws s3 cp guide_quantification_T21_A1_CTCF_counts.tsv s3://encode-files/2021/09/21/47f2ece7-91e1-4443-a062-8137a54207b9/ENCFF448CGM.tsv'. 2021-09-20 18:12:18,431:eu_debug: AWS upload successful. 2021-09-20 18:12:18,433:eu_debug: IN post(). 2021-09-20 18:12:18,447:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPRa_CTCF_Growth_T21_R2.Guide_Quantifications To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRa_CTCF_Growth_T21_R2.Guide_Quantifications" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRa_CTCF_Growth_T21", "derived_from": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T14_Rep2.fastq.gz" ], "file_format": "tsv", "file_size": 2639572, "lab": "/labs/will-greenleaf/", "md5sum": "97a0598a309b8df0ad9a67d57d4ca76b", "output_type": "guide quantifications", "submitted_file_name": "guide_quantification_T21_A2_CTCF_counts.tsv" } 2021-09-20 18:12:19,114:eu_debug: Success. 2021-09-20 18:12:19,115:eu_debug: IN upload_file() 2021-09-20 18:12:19,115:eu_debug: Attempting to generate new file upload credentials 2021-09-20 18:12:19,780:eu_debug: Success: upload credentials for 'ENCFF185UEH' regenerated. 2021-09-20 18:12:19,780:eu_debug: >>>>>>GET ENCFF185UEH From DCC with URL https://www.encodeproject.org/ENCFF185UEH/?format=json&datastore=database 2021-09-20 18:12:20,955:eu_debug: Running command 'aws s3 cp guide_quantification_T21_A2_CTCF_counts.tsv s3://encode-files/2021/09/21/fb54f669-6b2b-4052-969e-b7ced9977e53/ENCFF185UEH.tsv'. 2021-09-20 18:12:22,078:eu_debug: AWS upload successful. 2021-09-20 18:12:22,079:eu_debug: IN post(). 2021-09-20 18:12:22,092:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPRd_CTCF_Growth_T7_R1.Guide_Quantifications To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRd_CTCF_Growth_T7_R1.Guide_Quantifications" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRd_CTCF_Growth_T7", "derived_from": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.dCas9_T0_R1.fastq.gz" ], "file_format": "tsv", "file_size": 2636812, "lab": "/labs/will-greenleaf/", "md5sum": "2110b73c005bd09d81f122fc215eeff2", "output_type": "guide quantifications", "submitted_file_name": "guide_quantification_T7_D1_CTCF_counts.tsv" } 2021-09-20 18:12:22,741:eu_debug: Success. 2021-09-20 18:12:22,741:eu_debug: IN upload_file() 2021-09-20 18:12:22,742:eu_debug: Attempting to generate new file upload credentials 2021-09-20 18:12:23,391:eu_debug: Success: upload credentials for 'ENCFF967IMF' regenerated. 2021-09-20 18:12:23,391:eu_debug: >>>>>>GET ENCFF967IMF From DCC with URL https://www.encodeproject.org/ENCFF967IMF/?format=json&datastore=database 2021-09-20 18:12:23,972:eu_debug: Running command 'aws s3 cp guide_quantification_T7_D1_CTCF_counts.tsv s3://encode-files/2021/09/21/0109d6a0-bc92-40cf-b652-5a1d96c454d7/ENCFF967IMF.tsv'. 2021-09-20 18:12:25,066:eu_debug: AWS upload successful. 2021-09-20 18:12:25,067:eu_debug: IN post(). 2021-09-20 18:12:25,080:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPRd_CTCF_Growth_T7_R2.Guide_Quantifications To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRd_CTCF_Growth_T7_R2.Guide_Quantifications" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRd_CTCF_Growth_T7", "derived_from": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.dCas9_T0_R2.fastq.gz" ], "file_format": "tsv", "file_size": 2636396, "lab": "/labs/will-greenleaf/", "md5sum": "fe753ffbda6a6e4b1ae890ec075a3ea6", "output_type": "guide quantifications", "submitted_file_name": "guide_quantification_T7_D2_CTCF_counts.tsv" } 2021-09-20 18:12:25,817:eu_debug: Success. 2021-09-20 18:12:25,817:eu_debug: IN upload_file() 2021-09-20 18:12:25,818:eu_debug: Attempting to generate new file upload credentials 2021-09-20 18:12:26,775:eu_debug: Success: upload credentials for 'ENCFF681FQG' regenerated. 2021-09-20 18:12:26,775:eu_debug: >>>>>>GET ENCFF681FQG From DCC with URL https://www.encodeproject.org/ENCFF681FQG/?format=json&datastore=database 2021-09-20 18:12:27,355:eu_debug: Running command 'aws s3 cp guide_quantification_T7_D2_CTCF_counts.tsv s3://encode-files/2021/09/21/33db56fe-9f14-48fb-b17d-600ceaef972f/ENCFF681FQG.tsv'. 2021-09-20 18:12:28,480:eu_debug: AWS upload successful. 2021-09-20 18:12:28,481:eu_debug: IN post(). 2021-09-20 18:12:28,493:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPRd_CTCF_Growth_T21_R1.Guide_Quantifications To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRd_CTCF_Growth_T21_R1.Guide_Quantifications" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRd_CTCF_Growth_T21", "derived_from": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.dCas9_T14_Rep1.fastq.gz" ], "file_format": "tsv", "file_size": 2641546, "lab": "/labs/will-greenleaf/", "md5sum": "6c0ff27816a2a120c6897e7755cf3f77", "output_type": "guide quantifications", "submitted_file_name": "guide_quantification_T21_D1_CTCF_counts.tsv" } 2021-09-20 18:12:29,166:eu_debug: Success. 2021-09-20 18:12:29,166:eu_debug: IN upload_file() 2021-09-20 18:12:29,167:eu_debug: Attempting to generate new file upload credentials 2021-09-20 18:12:29,857:eu_debug: Success: upload credentials for 'ENCFF772BTK' regenerated. 2021-09-20 18:12:29,857:eu_debug: >>>>>>GET ENCFF772BTK From DCC with URL https://www.encodeproject.org/ENCFF772BTK/?format=json&datastore=database 2021-09-20 18:12:30,441:eu_debug: Running command 'aws s3 cp guide_quantification_T21_D1_CTCF_counts.tsv s3://encode-files/2021/09/21/70227a55-d1e0-4304-8a72-d2267c4ceab6/ENCFF772BTK.tsv'. 2021-09-20 18:12:31,624:eu_debug: AWS upload successful. 2021-09-20 18:12:31,626:eu_debug: IN post(). 2021-09-20 18:12:31,639:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPRd_CTCF_Growth_T21_R2.Guide_Quantifications To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRd_CTCF_Growth_T21_R2.Guide_Quantifications" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRd_CTCF_Growth_T21", "derived_from": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.dCas9_T14_Rep2.fastq.gz" ], "file_format": "tsv", "file_size": 2635887, "lab": "/labs/will-greenleaf/", "md5sum": "e60e5ce249f04d7a6438d82b3b34d52d", "output_type": "guide quantifications", "submitted_file_name": "guide_quantification_T21_D2_CTCF_counts.tsv" } 2021-09-20 18:12:32,314:eu_debug: Success. 2021-09-20 18:12:32,314:eu_debug: IN upload_file() 2021-09-20 18:12:32,314:eu_debug: Attempting to generate new file upload credentials 2021-09-20 18:12:32,996:eu_debug: Success: upload credentials for 'ENCFF190RRK' regenerated. 2021-09-20 18:12:32,996:eu_debug: >>>>>>GET ENCFF190RRK From DCC with URL https://www.encodeproject.org/ENCFF190RRK/?format=json&datastore=database 2021-09-20 18:12:33,589:eu_debug: Running command 'aws s3 cp guide_quantification_T21_D2_CTCF_counts.tsv s3://encode-files/2021/09/21/71c61b1f-c52d-4c72-84fd-994b617fad70/ENCFF190RRK.tsv'. 2021-09-20 18:12:34,658:eu_debug: AWS upload successful. 2021-09-20 18:12:34,660:eu_debug: IN post(). 2021-09-20 18:12:34,665:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPRi_CTCF_Growth_T7_R1.Guide_Quantifications To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRi_CTCF_Growth_T7_R1.Guide_Quantifications" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRi_CTCF_Growth_T7", "derived_from": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T0_R1.fastq.gz" ], "file_format": "tsv", "file_size": 2637545, "lab": "/labs/will-greenleaf/", "md5sum": "2830552b1bfd683465ca1a07620094ac", "output_type": "guide quantifications", "submitted_file_name": "guide_quantification_T7_I1_CTCF_counts.tsv" } 2021-09-20 18:12:35,329:eu_debug: Success. 2021-09-20 18:12:35,330:eu_debug: IN upload_file() 2021-09-20 18:12:35,330:eu_debug: Attempting to generate new file upload credentials 2021-09-20 18:12:35,977:eu_debug: Success: upload credentials for 'ENCFF409HZI' regenerated. 2021-09-20 18:12:35,977:eu_debug: >>>>>>GET ENCFF409HZI From DCC with URL https://www.encodeproject.org/ENCFF409HZI/?format=json&datastore=database 2021-09-20 18:12:36,563:eu_debug: Running command 'aws s3 cp guide_quantification_T7_I1_CTCF_counts.tsv s3://encode-files/2021/09/21/1aa27e84-2393-49c9-a84c-f94232e845b6/ENCFF409HZI.tsv'. 2021-09-20 18:12:37,652:eu_debug: AWS upload successful. 2021-09-20 18:12:37,653:eu_debug: IN post(). 2021-09-20 18:12:37,667:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPRi_CTCF_Growth_T7_R2.Guide_Quantifications To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRi_CTCF_Growth_T7_R2.Guide_Quantifications" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRi_CTCF_Growth_T7", "derived_from": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T0_R2.fastq.gz" ], "file_format": "tsv", "file_size": 2636325, "lab": "/labs/will-greenleaf/", "md5sum": "bef07757a5d1cdc465a2bc58d6281b60", "output_type": "guide quantifications", "submitted_file_name": "guide_quantification_T7_I2_CTCF_counts.tsv" } 2021-09-20 18:12:38,333:eu_debug: Success. 2021-09-20 18:12:38,333:eu_debug: IN upload_file() 2021-09-20 18:12:38,334:eu_debug: Attempting to generate new file upload credentials 2021-09-20 18:12:39,001:eu_debug: Success: upload credentials for 'ENCFF411MWK' regenerated. 2021-09-20 18:12:39,002:eu_debug: >>>>>>GET ENCFF411MWK From DCC with URL https://www.encodeproject.org/ENCFF411MWK/?format=json&datastore=database 2021-09-20 18:12:39,588:eu_debug: Running command 'aws s3 cp guide_quantification_T7_I2_CTCF_counts.tsv s3://encode-files/2021/09/21/391095df-6c09-474f-9c87-4474b3a996c3/ENCFF411MWK.tsv'. 2021-09-20 18:12:40,677:eu_debug: AWS upload successful. 2021-09-20 18:12:40,678:eu_debug: IN post(). 2021-09-20 18:12:40,687:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPRi_CTCF_Growth_T21_R1.Guide_Quantifications To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRi_CTCF_Growth_T21_R1.Guide_Quantifications" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRi_CTCF_Growth_T21", "derived_from": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T14_Rep1.fastq.gz" ], "file_format": "tsv", "file_size": 2637087, "lab": "/labs/will-greenleaf/", "md5sum": "3cc41866a11dbc743aa120b4c1d16a8d", "output_type": "guide quantifications", "submitted_file_name": "guide_quantification_T21_I1_CTCF_counts.tsv" } 2021-09-20 18:12:41,352:eu_debug: Success. 2021-09-20 18:12:41,353:eu_debug: IN upload_file() 2021-09-20 18:12:41,353:eu_debug: Attempting to generate new file upload credentials 2021-09-20 18:12:42,006:eu_debug: Success: upload credentials for 'ENCFF880BHY' regenerated. 2021-09-20 18:12:42,006:eu_debug: >>>>>>GET ENCFF880BHY From DCC with URL https://www.encodeproject.org/ENCFF880BHY/?format=json&datastore=database 2021-09-20 18:12:42,600:eu_debug: Running command 'aws s3 cp guide_quantification_T21_I1_CTCF_counts.tsv s3://encode-files/2021/09/21/0fe88a4a-efc7-4a7c-97d6-2812cbae611b/ENCFF880BHY.tsv'. 2021-09-20 18:12:43,740:eu_debug: AWS upload successful. 2021-09-20 18:12:43,740:eu_debug: IN post(). 2021-09-20 18:12:43,749:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPRi_CTCF_Growth_T21_R2.Guide_Quantifications To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRi_CTCF_Growth_T21_R2.Guide_Quantifications" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRi_CTCF_Growth_T21", "derived_from": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T14_Rep2.fastq.gz" ], "file_format": "tsv", "file_size": 2635928, "lab": "/labs/will-greenleaf/", "md5sum": "e3ba2a864a7eac3cf3c7071326bf61bd", "output_type": "guide quantifications", "submitted_file_name": "guide_quantification_T21_I2_CTCF_counts.tsv" } 2021-09-20 18:12:44,401:eu_debug: Success. 2021-09-20 18:12:44,401:eu_debug: IN upload_file() 2021-09-20 18:12:44,401:eu_debug: Attempting to generate new file upload credentials 2021-09-20 18:12:45,327:eu_debug: Success: upload credentials for 'ENCFF372EPY' regenerated. 2021-09-20 18:12:45,327:eu_debug: >>>>>>GET ENCFF372EPY From DCC with URL https://www.encodeproject.org/ENCFF372EPY/?format=json&datastore=database 2021-09-20 18:12:45,905:eu_debug: Running command 'aws s3 cp guide_quantification_T21_I2_CTCF_counts.tsv s3://encode-files/2021/09/21/5763d5b7-7500-48cc-8bfb-e459fb8ecf17/ENCFF372EPY.tsv'. 2021-09-20 18:12:46,992:eu_debug: AWS upload successful. 2021-09-20 18:12:46,994:eu_debug: IN post(). 2021-09-20 18:12:47,007:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPRk_CTCF_Growth_T7_R1.Guide_Quantifications To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF_Growth_T7_R1.Guide_Quantifications" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRk_CTCF_Growth_T7", "derived_from": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRKO_T0_R1.fastq.gz" ], "file_format": "tsv", "file_size": 2637490, "lab": "/labs/will-greenleaf/", "md5sum": "ca32a0aab41fc51bde7b47222757def4", "output_type": "guide quantifications", "submitted_file_name": "guide_quantification_T7_K1_CTCF_counts.tsv" } 2021-09-20 18:12:47,674:eu_debug: Success. 2021-09-20 18:12:47,674:eu_debug: IN upload_file() 2021-09-20 18:12:47,675:eu_debug: Attempting to generate new file upload credentials 2021-09-20 18:12:48,348:eu_debug: Success: upload credentials for 'ENCFF515XUU' regenerated. 2021-09-20 18:12:48,348:eu_debug: >>>>>>GET ENCFF515XUU From DCC with URL https://www.encodeproject.org/ENCFF515XUU/?format=json&datastore=database 2021-09-20 18:12:48,942:eu_debug: Running command 'aws s3 cp guide_quantification_T7_K1_CTCF_counts.tsv s3://encode-files/2021/09/21/e3da29dc-5fa2-4ccc-a619-ddd15304e09f/ENCFF515XUU.tsv'. 2021-09-20 18:12:50,067:eu_debug: AWS upload successful. 2021-09-20 18:12:50,068:eu_debug: IN post(). 2021-09-20 18:12:50,080:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPRk_CTCF_Growth_T7_R2.Guide_Quantifications To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF_Growth_T7_R2.Guide_Quantifications" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRk_CTCF_Growth_T7", "derived_from": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRKO_T0_R2.fastq.gz" ], "file_format": "tsv", "file_size": 2639372, "lab": "/labs/will-greenleaf/", "md5sum": "a6adf552485071839bff7bbc0d4eb96c", "output_type": "guide quantifications", "submitted_file_name": "guide_quantification_T7_K2_CTCF_counts.tsv" } 2021-09-20 18:12:51,129:eu_debug: Success. 2021-09-20 18:12:51,129:eu_debug: IN upload_file() 2021-09-20 18:12:51,130:eu_debug: Attempting to generate new file upload credentials 2021-09-20 18:12:51,797:eu_debug: Success: upload credentials for 'ENCFF841ETD' regenerated. 2021-09-20 18:12:51,797:eu_debug: >>>>>>GET ENCFF841ETD From DCC with URL https://www.encodeproject.org/ENCFF841ETD/?format=json&datastore=database 2021-09-20 18:12:52,394:eu_debug: Running command 'aws s3 cp guide_quantification_T7_K2_CTCF_counts.tsv s3://encode-files/2021/09/21/69413beb-5bb0-419b-8fe6-d8215353d2f5/ENCFF841ETD.tsv'. 2021-09-20 18:12:53,576:eu_debug: AWS upload successful. 2021-09-20 18:12:53,578:eu_debug: IN post(). 2021-09-20 18:12:53,591:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPRk_CTCF_Growth_T21_R1.Guide_Quantifications To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF_Growth_T21_R1.Guide_Quantifications" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRk_CTCF_Growth_T21", "derived_from": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRKO_T14_Rep1.fastq.gz" ], "file_format": "tsv", "file_size": 2631506, "lab": "/labs/will-greenleaf/", "md5sum": "1c3b9af19dfd911634e8b181a2e4b0ac", "output_type": "guide quantifications", "submitted_file_name": "guide_quantification_T21_K1_CTCF_counts.tsv" } 2021-09-20 18:12:54,250:eu_debug: Success. 2021-09-20 18:12:54,250:eu_debug: IN upload_file() 2021-09-20 18:12:54,250:eu_debug: Attempting to generate new file upload credentials 2021-09-20 18:12:54,921:eu_debug: Success: upload credentials for 'ENCFF050UCR' regenerated. 2021-09-20 18:12:54,922:eu_debug: >>>>>>GET ENCFF050UCR From DCC with URL https://www.encodeproject.org/ENCFF050UCR/?format=json&datastore=database 2021-09-20 18:12:55,525:eu_debug: Running command 'aws s3 cp guide_quantification_T21_K1_CTCF_counts.tsv s3://encode-files/2021/09/21/f38166da-016e-47b0-ad1c-b15833a86b52/ENCFF050UCR.tsv'. 2021-09-20 18:12:56,674:eu_debug: AWS upload successful. 2021-09-20 18:12:56,676:eu_debug: IN post(). 2021-09-20 18:12:56,690:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPRk_CTCF_Growth_T21_R2.Guide_Quantifications To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF_Growth_T21_R2.Guide_Quantifications" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRk_CTCF_Growth_T21", "derived_from": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRKO_T14_Rep2.fastq.gz" ], "file_format": "tsv", "file_size": 2637198, "lab": "/labs/will-greenleaf/", "md5sum": "2abf35c1f9293f65c93c99b79d313b5d", "output_type": "guide quantifications", "submitted_file_name": "guide_quantification_T21_K2_CTCF_counts.tsv" } 2021-09-20 18:12:57,359:eu_debug: Success. 2021-09-20 18:12:57,359:eu_debug: IN upload_file() 2021-09-20 18:12:57,359:eu_debug: Attempting to generate new file upload credentials 2021-09-20 18:12:58,035:eu_debug: Success: upload credentials for 'ENCFF186XFL' regenerated. 2021-09-20 18:12:58,035:eu_debug: >>>>>>GET ENCFF186XFL From DCC with URL https://www.encodeproject.org/ENCFF186XFL/?format=json&datastore=database 2021-09-20 18:12:58,930:eu_debug: Running command 'aws s3 cp guide_quantification_T21_K2_CTCF_counts.tsv s3://encode-files/2021/09/21/78b0323c-a4b6-4f88-86d3-3e73ca37e63f/ENCFF186XFL.tsv'. 2021-09-20 18:13:00,034:eu_debug: AWS upload successful. 2021-09-20 18:13:08,310:eu_debug: submission=False: In non-submission mode. 2021-09-20 18:13:08,652:eu_debug: submission=True: In submission mode. 2021-09-20 18:13:09,145:eu_debug: IN post(). 2021-09-20 18:13:09,146:eu_debug: <<<<<< POST functional_characterization_series record will-greenleaf:CRISPRi_CTCF_Motif_Growth To DCC with URL https://www.encodeproject.org/functional_characterization_series and this payload: { "aliases": [ "will-greenleaf:CRISPRi_CTCF_Motif_Growth" ], "award": "/awards/UM1HG009436/", "description": "Functional characterization series for dCas9-KRAB/CRISPRi proliferation screens at CTCF motifs around essential genes", "lab": "/labs/will-greenleaf/", "related_datasets": [ "will-greenleaf:K562_CRISPRi_CTCF_Growth_T7", "will-greenleaf:K562_CRISPRi_CTCF_Growth_T21" ] } 2021-09-20 18:13:09,528:eu_debug: Success. 2021-09-20 18:13:09,528:eu_debug: IN post(). 2021-09-20 18:13:09,529:eu_debug: <<<<<< POST functional_characterization_series record will-greenleaf:CRISPRk_CTCF_Motif_Growth To DCC with URL https://www.encodeproject.org/functional_characterization_series and this payload: { "aliases": [ "will-greenleaf:CRISPRk_CTCF_Motif_Growth" ], "award": "/awards/UM1HG009436/", "description": "Functional characterization series for Cas9/CRISPRk proliferation screens at CTCF motifs around essential genes", "lab": "/labs/will-greenleaf/", "related_datasets": [ "will-greenleaf:K562_CRISPRk_CTCF_Growth_T7", "will-greenleaf:K562_CRISPRk_CTCF_Growth_T21" ] } 2021-09-20 18:13:09,921:eu_debug: Success. 2021-09-20 18:13:09,922:eu_debug: IN post(). 2021-09-20 18:13:09,923:eu_debug: <<<<<< POST functional_characterization_series record will-greenleaf:CRISPRa_CTCF_Motif_Growth To DCC with URL https://www.encodeproject.org/functional_characterization_series and this payload: { "aliases": [ "will-greenleaf:CRISPRa_CTCF_Motif_Growth" ], "award": "/awards/UM1HG009436/", "description": "Functional characterization series for dCas9-VPR/CRISPRa proliferation screens at CTCF motifs around essential genes", "lab": "/labs/will-greenleaf/", "related_datasets": [ "will-greenleaf:K562_CRISPRa_CTCF_Growth_T7", "will-greenleaf:K562_CRISPRa_CTCF_Growth_T21" ] } 2021-09-20 18:13:10,302:eu_debug: Success. 2021-09-20 18:13:10,303:eu_debug: IN post(). 2021-09-20 18:13:10,303:eu_debug: <<<<<< POST functional_characterization_series record will-greenleaf:CRISPRd_CTCF_Motif_Growth To DCC with URL https://www.encodeproject.org/functional_characterization_series and this payload: { "aliases": [ "will-greenleaf:CRISPRd_CTCF_Motif_Growth" ], "award": "/awards/UM1HG009436/", "description": "Functional characterization series for dCas9/CRISPRd proliferation screens at CTCF motifs around essential genes", "lab": "/labs/will-greenleaf/", "related_datasets": [ "will-greenleaf:K562_CRISPRd_CTCF_Growth_T7", "will-greenleaf:K562_CRISPRd_CTCF_Growth_T21" ] } 2021-09-20 18:13:10,693:eu_debug: Success. 2021-09-20 18:18:43,428:eu_debug: submission=False: In non-submission mode. 2021-09-20 18:18:43,737:eu_debug: submission=True: In submission mode. 2021-09-20 18:18:44,231:eu_debug: IN patch() 2021-09-20 18:18:44,232:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRa_CTCF_Growth_T7 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRa_CTCF_Growth_T7/?format=json&datastore=database&frame=edit 2021-09-20 18:18:44,343:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRa_CTCF_Growth_T7 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRa_CTCF_Growth_T7 and this payload: { "description": "Functional characterization series for dCas9-VPR/CRISPRa proliferation screens at CTCF motifs around essential genes" } 2021-09-20 18:18:44,728:eu_debug: Success. 2021-09-20 18:18:44,733:eu_debug: IN patch() 2021-09-20 18:18:44,733:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRa_CTCF_Growth_T21 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRa_CTCF_Growth_T21/?format=json&datastore=database&frame=edit 2021-09-20 18:18:44,848:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRa_CTCF_Growth_T21 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRa_CTCF_Growth_T21 and this payload: { "description": "Functional characterization series for dCas9-VPR/CRISPRa proliferation screens at CTCF motifs around essential genes" } 2021-09-20 18:18:45,193:eu_debug: Success. 2021-09-20 18:18:45,193:eu_debug: IN patch() 2021-09-20 18:18:45,194:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRd_CTCF_Growth_T7 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRd_CTCF_Growth_T7/?format=json&datastore=database&frame=edit 2021-09-20 18:18:45,307:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRd_CTCF_Growth_T7 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRd_CTCF_Growth_T7 and this payload: { "description": "Functional characterization series for dCas9/CRISPRd proliferation screens at CTCF motifs around essential genes" } 2021-09-20 18:18:45,700:eu_debug: Success. 2021-09-20 18:18:45,701:eu_debug: IN patch() 2021-09-20 18:18:45,701:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRd_CTCF_Growth_T21 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRd_CTCF_Growth_T21/?format=json&datastore=database&frame=edit 2021-09-20 18:18:45,814:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRd_CTCF_Growth_T21 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRd_CTCF_Growth_T21 and this payload: { "description": "Functional characterization series for dCas9/CRISPRd proliferation screens at CTCF motifs around essential genes" } 2021-09-20 18:18:46,206:eu_debug: Success. 2021-09-20 18:18:46,207:eu_debug: IN patch() 2021-09-20 18:18:46,207:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRi_CTCF_Growth_T7 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRi_CTCF_Growth_T7/?format=json&datastore=database&frame=edit 2021-09-20 18:18:46,324:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRi_CTCF_Growth_T7 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRi_CTCF_Growth_T7 and this payload: { "description": "Functional characterization series for dCas9-KRAB/CRISPRi proliferation screens at CTCF motifs around essential genes" } 2021-09-20 18:18:46,941:eu_debug: Success. 2021-09-20 18:18:46,941:eu_debug: IN patch() 2021-09-20 18:18:46,942:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRi_CTCF_Growth_T21 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRi_CTCF_Growth_T21/?format=json&datastore=database&frame=edit 2021-09-20 18:18:47,055:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRi_CTCF_Growth_T21 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRi_CTCF_Growth_T21 and this payload: { "description": "Functional characterization series for dCas9-KRAB/CRISPRi proliferation screens at CTCF motifs around essential genes" } 2021-09-20 18:18:47,404:eu_debug: Success. 2021-09-20 18:18:47,405:eu_debug: IN patch() 2021-09-20 18:18:47,405:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRk_CTCF_Growth_T7 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_CTCF_Growth_T7/?format=json&datastore=database&frame=edit 2021-09-20 18:18:47,516:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRk_CTCF_Growth_T7 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_CTCF_Growth_T7 and this payload: { "description": "Functional characterization series for Cas9/CRISPRk proliferation screens at CTCF motifs around essential genes" } 2021-09-20 18:18:47,871:eu_debug: Success. 2021-09-20 18:18:47,872:eu_debug: IN patch() 2021-09-20 18:18:47,872:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRk_CTCF_Growth_T21 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_CTCF_Growth_T21/?format=json&datastore=database&frame=edit 2021-09-20 18:18:47,985:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRk_CTCF_Growth_T21 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_CTCF_Growth_T21 and this payload: { "description": "Functional characterization series for Cas9/CRISPRk proliferation screens at CTCF motifs around essential genes" } 2021-09-20 18:18:48,340:eu_debug: Success. 2021-10-26 13:02:31,525:eu_debug: submission=False: In non-submission mode. 2021-10-26 13:02:32,012:eu_debug: submission=True: In submission mode. 2021-10-26 13:02:32,564:eu_debug: IN patch() 2021-10-26 13:02:32,564:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRa_CTCF_Growth_T21_R1.Biosample From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRa_CTCF_Growth_T21_R1.Biosample/?format=json&datastore=database&frame=edit 2021-10-26 13:02:32,708:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRa_CTCF_Growth_T21_R1.Biosample To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRa_CTCF_Growth_T21_R1.Biosample and this payload: { "post_nucleic_acid_delivery_time": 21 } 2021-10-26 13:02:33,063:eu_debug: Success. 2021-10-26 13:02:33,063:eu_debug: IN patch() 2021-10-26 13:02:33,064:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRa_CTCF_Growth_T21_R2.Biosample From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRa_CTCF_Growth_T21_R2.Biosample/?format=json&datastore=database&frame=edit 2021-10-26 13:02:33,187:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRa_CTCF_Growth_T21_R2.Biosample To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRa_CTCF_Growth_T21_R2.Biosample and this payload: { "post_nucleic_acid_delivery_time": 21 } 2021-10-26 13:02:33,882:eu_debug: Success. 2021-10-26 13:02:33,882:eu_debug: IN patch() 2021-10-26 13:02:33,882:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRd_CTCF_Growth_T21_R1.Biosample From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRd_CTCF_Growth_T21_R1.Biosample/?format=json&datastore=database&frame=edit 2021-10-26 13:02:34,000:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRd_CTCF_Growth_T21_R1.Biosample To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRd_CTCF_Growth_T21_R1.Biosample and this payload: { "post_nucleic_acid_delivery_time": 21 } 2021-10-26 13:02:34,359:eu_debug: Success. 2021-10-26 13:02:34,359:eu_debug: IN patch() 2021-10-26 13:02:34,359:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRd_CTCF_Growth_T21_R2.Biosample From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRd_CTCF_Growth_T21_R2.Biosample/?format=json&datastore=database&frame=edit 2021-10-26 13:02:34,503:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRd_CTCF_Growth_T21_R2.Biosample To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRd_CTCF_Growth_T21_R2.Biosample and this payload: { "post_nucleic_acid_delivery_time": 21 } 2021-10-26 13:02:34,864:eu_debug: Success. 2021-10-26 13:02:34,865:eu_debug: IN patch() 2021-10-26 13:02:34,865:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRi_CTCF_Growth_T21_R1.Biosample From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRi_CTCF_Growth_T21_R1.Biosample/?format=json&datastore=database&frame=edit 2021-10-26 13:02:34,983:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRi_CTCF_Growth_T21_R1.Biosample To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRi_CTCF_Growth_T21_R1.Biosample and this payload: { "post_nucleic_acid_delivery_time": 21 } 2021-10-26 13:02:35,697:eu_debug: Success. 2021-10-26 13:02:35,697:eu_debug: IN patch() 2021-10-26 13:02:35,697:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRi_CTCF_Growth_T21_R2.Biosample From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRi_CTCF_Growth_T21_R2.Biosample/?format=json&datastore=database&frame=edit 2021-10-26 13:02:35,814:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRi_CTCF_Growth_T21_R2.Biosample To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRi_CTCF_Growth_T21_R2.Biosample and this payload: { "post_nucleic_acid_delivery_time": 21 } 2021-10-26 13:02:36,138:eu_debug: Success. 2021-10-26 13:02:36,139:eu_debug: IN patch() 2021-10-26 13:02:36,139:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRk_CTCF_Growth_T21_R1.Biosample From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_CTCF_Growth_T21_R1.Biosample/?format=json&datastore=database&frame=edit 2021-10-26 13:02:36,253:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRk_CTCF_Growth_T21_R1.Biosample To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_CTCF_Growth_T21_R1.Biosample and this payload: { "post_nucleic_acid_delivery_time": 21 } 2021-10-26 13:02:36,681:eu_debug: Success. 2021-10-26 13:02:36,682:eu_debug: IN patch() 2021-10-26 13:02:36,682:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRk_CTCF_Growth_T21_R2.Biosample From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_CTCF_Growth_T21_R2.Biosample/?format=json&datastore=database&frame=edit 2021-10-26 13:02:36,799:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRk_CTCF_Growth_T21_R2.Biosample To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_CTCF_Growth_T21_R2.Biosample and this payload: { "post_nucleic_acid_delivery_time": 21 } 2021-10-26 13:02:37,133:eu_debug: Success. 2021-10-26 13:02:42,224:eu_debug: submission=False: In non-submission mode. 2021-10-26 13:02:42,555:eu_debug: submission=True: In submission mode. 2021-10-26 13:02:43,250:eu_debug: IN patch() 2021-10-26 13:02:43,250:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRa_CTCF_Growth_T7 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRa_CTCF_Growth_T7/?format=json&datastore=database&frame=edit 2021-10-26 13:02:43,367:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRa_CTCF_Growth_T7 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRa_CTCF_Growth_T7 and this payload: { "description": "Functional characterization experiment for tiling, dCas9-VPR/CRISPRa proliferation screens at CTCF motifs in loop anchors" } 2021-10-26 13:02:43,754:eu_debug: Success. 2021-10-26 13:02:43,755:eu_debug: IN patch() 2021-10-26 13:02:43,755:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRa_CTCF_Growth_T21 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRa_CTCF_Growth_T21/?format=json&datastore=database&frame=edit 2021-10-26 13:02:43,896:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRa_CTCF_Growth_T21 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRa_CTCF_Growth_T21 and this payload: { "description": "Functional characterization experiment for tiling, dCas9-VPR/CRISPRa proliferation screens at CTCF motifs in loop anchors" } 2021-10-26 13:02:44,276:eu_debug: Success. 2021-10-26 13:02:44,276:eu_debug: IN patch() 2021-10-26 13:02:44,277:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRd_CTCF_Growth_T7 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRd_CTCF_Growth_T7/?format=json&datastore=database&frame=edit 2021-10-26 13:02:44,391:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRd_CTCF_Growth_T7 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRd_CTCF_Growth_T7 and this payload: { "description": "Functional characterization experiment for tiling, dCas9/CRISPRd proliferation screens at CTCF motifs in loop anchors" } 2021-10-26 13:02:44,798:eu_debug: Success. 2021-10-26 13:02:44,799:eu_debug: IN patch() 2021-10-26 13:02:44,799:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRd_CTCF_Growth_T21 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRd_CTCF_Growth_T21/?format=json&datastore=database&frame=edit 2021-10-26 13:02:44,941:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRd_CTCF_Growth_T21 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRd_CTCF_Growth_T21 and this payload: { "description": "Functional characterization experiment for tiling, dCas9/CRISPRd proliferation screens at CTCF motifs in loop anchors" } 2021-10-26 13:02:45,324:eu_debug: Success. 2021-10-26 13:02:45,324:eu_debug: IN patch() 2021-10-26 13:02:45,325:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRi_CTCF_Growth_T7 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRi_CTCF_Growth_T7/?format=json&datastore=database&frame=edit 2021-10-26 13:02:45,444:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRi_CTCF_Growth_T7 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRi_CTCF_Growth_T7 and this payload: { "description": "Functional characterization experiment for tiling, dCas9-KRAB/CRISPRi proliferation screens at CTCF motifs in loop anchors" } 2021-10-26 13:02:45,849:eu_debug: Success. 2021-10-26 13:02:45,850:eu_debug: IN patch() 2021-10-26 13:02:45,850:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRi_CTCF_Growth_T21 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRi_CTCF_Growth_T21/?format=json&datastore=database&frame=edit 2021-10-26 13:02:45,969:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRi_CTCF_Growth_T21 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRi_CTCF_Growth_T21 and this payload: { "description": "Functional characterization experiment for tiling, dCas9-KRAB/CRISPRi proliferation screens at CTCF motifs in loop anchors" } 2021-10-26 13:02:46,351:eu_debug: Success. 2021-10-26 13:02:46,352:eu_debug: IN patch() 2021-10-26 13:02:46,352:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRk_CTCF_Growth_T7 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_CTCF_Growth_T7/?format=json&datastore=database&frame=edit 2021-10-26 13:02:46,472:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRk_CTCF_Growth_T7 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_CTCF_Growth_T7 and this payload: { "description": "Functional characterization experiment for tiling, Cas9/CRISPRk proliferation screens at CTCF motifs in loop anchors" } 2021-10-26 13:02:46,863:eu_debug: Success. 2021-10-26 13:02:46,864:eu_debug: IN patch() 2021-10-26 13:02:46,864:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRk_CTCF_Growth_T21 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_CTCF_Growth_T21/?format=json&datastore=database&frame=edit 2021-10-26 13:02:46,982:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRk_CTCF_Growth_T21 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_CTCF_Growth_T21 and this payload: { "description": "Functional characterization experiment for tiling, Cas9/CRISPRk proliferation screens at CTCF motifs in loop anchors" } 2021-10-26 13:02:47,711:eu_debug: Success. 2021-10-26 13:02:52,059:eu_debug: submission=False: In non-submission mode. 2021-10-26 13:02:52,736:eu_debug: submission=True: In submission mode. 2021-10-26 13:02:53,316:eu_debug: IN patch() 2021-10-26 13:02:53,317:eu_debug: >>>>>>GET will-greenleaf:CRISPRi_CTCF_Motif_Growth From DCC with URL https://www.encodeproject.org/will-greenleaf:CRISPRi_CTCF_Motif_Growth/?format=json&datastore=database&frame=edit 2021-10-26 13:02:53,433:eu_debug: <<<<<< PATCHING will-greenleaf:CRISPRi_CTCF_Motif_Growth To DCC with URL https://www.encodeproject.org/will-greenleaf:CRISPRi_CTCF_Motif_Growth and this payload: { "description": "Functional characterization series for dCas9-KRAB/CRISPRi proliferation screens at CTCF motifs in loop anchors" } 2021-10-26 13:02:53,853:eu_debug: Success. 2021-10-26 13:02:53,853:eu_debug: IN patch() 2021-10-26 13:02:53,854:eu_debug: >>>>>>GET will-greenleaf:CRISPRk_CTCF_Motif_Growth From DCC with URL https://www.encodeproject.org/will-greenleaf:CRISPRk_CTCF_Motif_Growth/?format=json&datastore=database&frame=edit 2021-10-26 13:02:53,989:eu_debug: <<<<<< PATCHING will-greenleaf:CRISPRk_CTCF_Motif_Growth To DCC with URL https://www.encodeproject.org/will-greenleaf:CRISPRk_CTCF_Motif_Growth and this payload: { "description": "Functional characterization series for Cas9/CRISPRk proliferation screens at CTCF motifs in loop anchors" } 2021-10-26 13:02:54,529:eu_debug: Success. 2021-10-26 13:02:54,529:eu_debug: IN patch() 2021-10-26 13:02:54,530:eu_debug: >>>>>>GET will-greenleaf:CRISPRa_CTCF_Motif_Growth From DCC with URL https://www.encodeproject.org/will-greenleaf:CRISPRa_CTCF_Motif_Growth/?format=json&datastore=database&frame=edit 2021-10-26 13:02:54,666:eu_debug: <<<<<< PATCHING will-greenleaf:CRISPRa_CTCF_Motif_Growth To DCC with URL https://www.encodeproject.org/will-greenleaf:CRISPRa_CTCF_Motif_Growth and this payload: { "description": "Functional characterization series for dCas9-VPR/CRISPRa proliferation screens at CTCF motifs in loop anchors" } 2021-10-26 13:02:55,111:eu_debug: Success. 2021-10-26 13:02:55,111:eu_debug: IN patch() 2021-10-26 13:02:55,112:eu_debug: >>>>>>GET will-greenleaf:CRISPRd_CTCF_Motif_Growth From DCC with URL https://www.encodeproject.org/will-greenleaf:CRISPRd_CTCF_Motif_Growth/?format=json&datastore=database&frame=edit 2021-10-26 13:02:55,222:eu_debug: <<<<<< PATCHING will-greenleaf:CRISPRd_CTCF_Motif_Growth To DCC with URL https://www.encodeproject.org/will-greenleaf:CRISPRd_CTCF_Motif_Growth and this payload: { "description": "Functional characterization series for dCas9/CRISPRd proliferation screens at CTCF motifs in loop anchors" } 2021-10-26 13:02:55,682:eu_debug: Success.