Information for 10-AATRGARTTTCC (Motif 9)


Reverse Opposite:

p-value:1e-6
log p-value:-1.605e+01
Information Content per bp:1.842
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.52%
Number of Background Sequences with motif5.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets24.0 +/- 10.8bp
Average Position of motif in Background11.6 +/- 8.4bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0107.1_RELA/Jaspar

Match Rank:1
Score:0.67
Offset:2
Orientation:forward strand
Alignment:AATRGARTTTCC
--GGGAATTTCC

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:2
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:AATRGARTTTCC
--GGGAATTTCC

MA0105.3_NFKB1/Jaspar

Match Rank:3
Score:0.66
Offset:2
Orientation:forward strand
Alignment:AATRGARTTTCC-
--GGGAATTTCCC

PB0135.1_Hoxa3_2/Jaspar

Match Rank:4
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----AATRGARTTTCC
CCTTAATNGNTTTT--

MA0101.1_REL/Jaspar

Match Rank:5
Score:0.63
Offset:2
Orientation:forward strand
Alignment:AATRGARTTTCC
--GGGGATTTCC

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:6
Score:0.61
Offset:1
Orientation:forward strand
Alignment:AATRGARTTTCC-
-NGGGGATTTCCC

PB0115.1_Ehf_2/Jaspar

Match Rank:7
Score:0.59
Offset:2
Orientation:forward strand
Alignment:AATRGARTTTCC------
--TAGTATTTCCGATCTT

MA0136.1_ELF5/Jaspar

Match Rank:8
Score:0.58
Offset:5
Orientation:forward strand
Alignment:AATRGARTTTCC--
-----TACTTCCTT

GFY(?)/Promoter/Homer

Match Rank:9
Score:0.57
Offset:0
Orientation:forward strand
Alignment:AATRGARTTTCC
ACTACAATTCCC

EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer

Match Rank:10
Score:0.57
Offset:6
Orientation:reverse strand
Alignment:AATRGARTTTCC----
------ACTTCCTGBT