Information for 10-TTATTAAAGC (Motif 6)


Reverse Opposite:

p-value:1e-13
log p-value:-3.036e+01
Information Content per bp:1.832
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.83%
Number of Background Sequences with motif4.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets21.1 +/- 12.6bp
Average Position of motif in Background24.6 +/- 4.5bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0151.1_ARID3A/Jaspar

Match Rank:1
Score:0.79
Offset:2
Orientation:forward strand
Alignment:TTATTAAAGC
--ATTAAA--

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:2
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:TTATTAAAGC
YCATTAMC--

PH0175.1_Vax2/Jaspar

Match Rank:3
Score:0.71
Offset:-6
Orientation:forward strand
Alignment:------TTATTAAAGC
GTGCACTAATTAAGAC

PB0001.1_Arid3a_1/Jaspar

Match Rank:4
Score:0.71
Offset:-6
Orientation:reverse strand
Alignment:------TTATTAAAGC-
NNNTTTTAATTAANNNN

PH0002.1_Alx4/Jaspar

Match Rank:5
Score:0.71
Offset:-6
Orientation:reverse strand
Alignment:------TTATTAAAGC-
GNNNATTAATTAATGCG

PH0011.1_Alx1_2/Jaspar

Match Rank:6
Score:0.71
Offset:-6
Orientation:reverse strand
Alignment:------TTATTAAAGC-
NNNAATTAATTAANGNG

PB0129.1_Glis2_2/Jaspar

Match Rank:7
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----TTATTAAAGC
AATATTAATAAAGA

PH0054.1_Hoxa7_1/Jaspar

Match Rank:8
Score:0.69
Offset:-6
Orientation:reverse strand
Alignment:------TTATTAAAGC-
GNNNATTAATTAANNCG

PH0160.1_Shox2/Jaspar

Match Rank:9
Score:0.69
Offset:-6
Orientation:reverse strand
Alignment:------TTATTAAAGC-
NNNAATTAATTAANNNG

PH0010.1_Alx1_1/Jaspar

Match Rank:10
Score:0.69
Offset:-6
Orientation:reverse strand
Alignment:------TTATTAAAGC-
GNNNATTAATTAATNCG