Information for 7-GCTTAGGGCCCA (Motif 5)


Reverse Opposite:

p-value:1e-15
log p-value:-3.546e+01
Information Content per bp:1.924
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.72%
Number of Background Sequences with motif0.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets25.6 +/- 12.5bp
Average Position of motif in Background29.6 +/- 1.9bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer

Match Rank:1
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:GCTTAGGGCCCA
GGTTAGAGACCT

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:2
Score:0.55
Offset:5
Orientation:forward strand
Alignment:GCTTAGGGCCCA-
-----AGGCCTAG

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:3
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-GCTTAGGGCCCA
GGATTAGC-----

PB0133.1_Hic1_2/Jaspar

Match Rank:4
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-GCTTAGGGCCCA---
NNNNTTGGGCACNNCN

MA0467.1_Crx/Jaspar

Match Rank:5
Score:0.51
Offset:-5
Orientation:forward strand
Alignment:-----GCTTAGGGCCCA
AAGAGGATTAG------

PB0113.1_E2F3_2/Jaspar

Match Rank:6
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--GCTTAGGGCCCA---
NNNNTTGGCGCCGANNN

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:7
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--GCTTAGGGCCCA
RGGATTAR------

PB0112.1_E2F2_2/Jaspar

Match Rank:8
Score:0.50
Offset:-2
Orientation:reverse strand
Alignment:--GCTTAGGGCCCA---
NNNNTTGGCGCCGANNN

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:9
Score:0.50
Offset:-3
Orientation:reverse strand
Alignment:---GCTTAGGGCCCA
VRGGATTARN-----

PB0143.1_Klf7_2/Jaspar

Match Rank:10
Score:0.50
Offset:-2
Orientation:forward strand
Alignment:--GCTTAGGGCCCA---
AAGCATACGCCCAACTT