Information for 14-GAGAAGHTTATG (Motif 13)


Reverse Opposite:

p-value:1e-7
log p-value:-1.836e+01
Information Content per bp:1.836
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.97%
Number of Background Sequences with motif22.0
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets12.0 +/- 5.0bp
Average Position of motif in Background19.3 +/- 12.3bp
Strand Bias (log2 ratio + to - strand density)2.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0164.1_Nr2e3/Jaspar

Match Rank:1
Score:0.69
Offset:3
Orientation:reverse strand
Alignment:GAGAAGHTTATG
---AAGCTTG--

MA0467.1_Crx/Jaspar

Match Rank:2
Score:0.66
Offset:0
Orientation:forward strand
Alignment:GAGAAGHTTATG
AAGAGGATTAG-

MA0029.1_Mecom/Jaspar

Match Rank:3
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--GAGAAGHTTATG
AAGATAAGATAACA

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:4
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:GAGAAGHTTATG--
---AAGGATATNTN

PB0023.1_Gata6_1/Jaspar

Match Rank:5
Score:0.60
Offset:-6
Orientation:forward strand
Alignment:------GAGAAGHTTATG
TATAGAGATAAGAATTG-

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:6
Score:0.59
Offset:3
Orientation:forward strand
Alignment:GAGAAGHTTATG
---RGGATTAR-

POL008.1_DCE_S_I/Jaspar

Match Rank:7
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GAGAAGHTTATG
-NGAAGC-----

PB0022.1_Gata5_1/Jaspar

Match Rank:8
Score:0.58
Offset:-6
Orientation:forward strand
Alignment:------GAGAAGHTTATG
TAAACTGATAAGAAGAT-

Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer

Match Rank:9
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---GAGAAGHTTATG
NBWGATAAGR-----

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:10
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:GAGAAGHTTATG
--VRGGATTARN