ChIP-Seq Pipeline HTML Report

./E003-INPUT_merged.cc.plot.pdf

./E003-INPUT_merged.cc.plot.pdf

./E003-INPUT_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E003-INPUT_merged.tagAlign.gz 181815762 95 0.685827849237695 35 0.6768616 1500 0.6680549 1.026604 2.018128 2 E003-INPUT_merged.tagAlign.gz 181815762 95 0.685827849237695 35 0.6768616 1500 0.6680549 1.026604 2.018128 2 E003-INPUT_merged.tagAlign.gz 181815762 95 0.685827849237695 35 0.6768616 1500 0.6680549 1.026604 2.018128 2 E003-INPUT_merged.tagAlign.gz 181815762 95 0.685827849237695 35 0.6768616 1500 0.6680549 1.026604 2.018128 2 E003-INPUT_merged.tagAlign.gz 181815762 95 0.685827849237695 35 0.6768616 1500 0.6680549 1.026604 2.018128 2 E003-INPUT_merged.tagAlign.gz 181815762 95 0.685827849237695 35 0.6768616 1500 0.6680549 1.026604 2.018128 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E003-INPUT_subsample-0.1e6.cc.plot.pdf

./E003-INPUT_subsample-0.1e6.cc.plot.pdf

./E003-INPUT_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E003-INPUT_subsample-0.1e6.tagAlign.gz 199845 -70 0.00325132791987146 40 0.003119194 1500 0.003123561 1.040904 -29.25799 NA E003-INPUT_subsample-0.1e6.tagAlign.gz 199845 -70 0.00325132791987146 40 0.003119194 1500 0.003123561 1.040904 -29.25799 NA E003-INPUT_subsample-0.1e6.tagAlign.gz 199845 -70 0.00325132791987146 40 0.003119194 1500 0.003123561 1.040904 -29.25799 NA E003-INPUT_subsample-0.1e6.tagAlign.gz 199845 -70 0.00325132791987146 40 0.003119194 1500 0.003123561 1.040904 -29.25799 NA E003-INPUT_subsample-0.1e6.tagAlign.gz 199845 -70 0.00325132791987146 40 0.003119194 1500 0.003123561 1.040904 -29.25799 NA E003-INPUT_subsample-0.1e6.tagAlign.gz 199845 -70 0.00325132791987146 40 0.003119194 1500 0.003123561 1.040904 -29.25799 NA
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E003-INPUT_subsample-0.25e6.cc.plot.pdf

./E003-INPUT_subsample-0.25e6.cc.plot.pdf

./E003-INPUT_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E003-INPUT_subsample-0.25e6.tagAlign.gz 499586 100 0.00709576120962599 35 0.007152065 1500 0.006914484 1.026217 0.7630111 0 E003-INPUT_subsample-0.25e6.tagAlign.gz 499586 100 0.00709576120962599 35 0.007152065 1500 0.006914484 1.026217 0.7630111 0 E003-INPUT_subsample-0.25e6.tagAlign.gz 499586 100 0.00709576120962599 35 0.007152065 1500 0.006914484 1.026217 0.7630111 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E003-INPUT_subsample-0.5e6.cc.plot.pdf

./E003-INPUT_subsample-0.5e6.cc.plot.pdf

./E003-INPUT_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E003-INPUT_subsample-0.5e6.tagAlign.gz 999169 90 0.0140202939980757 35 0.0140439 1500 0.01362211 1.029231 0.9440315 0 E003-INPUT_subsample-0.5e6.tagAlign.gz 999169 90 0.0140202939980757 35 0.0140439 1500 0.01362211 1.029231 0.9440315 0 E003-INPUT_subsample-0.5e6.tagAlign.gz 999169 90 0.0140202939980757 35 0.0140439 1500 0.01362211 1.029231 0.9440315 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E003-INPUT_subsample-10e6.cc.plot.pdf

./E003-INPUT_subsample-10e6.cc.plot.pdf

./E003-INPUT_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E003-INPUT_subsample-10e6.tagAlign.gz 19983009 95 0.217582036203003 35 0.2173695 1500 0.2113961 1.029262 1.035577 1 E003-INPUT_subsample-10e6.tagAlign.gz 19983009 95 0.217582036203003 35 0.2173695 1500 0.2113961 1.029262 1.035577 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E003-INPUT_subsample-1e6.cc.plot.pdf

./E003-INPUT_subsample-1e6.cc.plot.pdf

./E003-INPUT_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E003-INPUT_subsample-1e6.tagAlign.gz 1998356 90 0.0276315088539115 35 0.02763404 1500 0.02681696 1.030374 0.9969034 0 E003-INPUT_subsample-1e6.tagAlign.gz 1998356 90 0.0276315088539115 35 0.02763404 1500 0.02681696 1.030374 0.9969034 0 E003-INPUT_subsample-1e6.tagAlign.gz 1998356 90 0.0276315088539115 35 0.02763404 1500 0.02681696 1.030374 0.9969034 0 E003-INPUT_subsample-1e6.tagAlign.gz 1998356 90 0.0276315088539115 35 0.02763404 1500 0.02681696 1.030374 0.9969034 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E003-INPUT_subsample-2.5e6.cc.plot.pdf

./E003-INPUT_subsample-2.5e6.cc.plot.pdf

./E003-INPUT_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E003-INPUT_subsample-2.5e6.tagAlign.gz 4995692 95 0.0661152834555641 35 0.06607094 1500 0.06414158 1.030771 1.022986 1 E003-INPUT_subsample-2.5e6.tagAlign.gz 4995692 95 0.0661152834555641 35 0.06607094 1500 0.06414158 1.030771 1.022986 1 E003-INPUT_subsample-2.5e6.tagAlign.gz 4995692 95 0.0661152834555641 35 0.06607094 1500 0.06414158 1.030771 1.022986 1 E003-INPUT_subsample-2.5e6.tagAlign.gz 4995692 95 0.0661152834555641 35 0.06607094 1500 0.06414158 1.030771 1.022986 1 E003-INPUT_subsample-2.5e6.tagAlign.gz 4995692 95 0.0661152834555641 35 0.06607094 1500 0.06414158 1.030771 1.022986 1 E003-INPUT_subsample-2.5e6.tagAlign.gz 4995692 95 0.0661152834555641 35 0.06607094 1500 0.06414158 1.030771 1.022986 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E003-INPUT_subsample-20e6.cc.plot.pdf

./E003-INPUT_subsample-20e6.cc.plot.pdf

./E003-INPUT_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E003-INPUT_subsample-20e6.tagAlign.gz 39966497 95 0.352092746965656 35 0.3505838 1500 0.3423475 1.028466 1.183214 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E003-INPUT_subsample-30e6.cc.plot.pdf

./E003-INPUT_subsample-30e6.cc.plot.pdf

./E003-INPUT_subsample-30e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E003-INPUT_subsample-30e6.tagAlign.gz 59949606 95 0.443914215911003 35 0.4407741 1500 0.4320397 1.027485 1.359517 1 E003-INPUT_subsample-30e6.tagAlign.gz 59949606 95 0.443914215911003 35 0.4407741 1500 0.4320397 1.027485 1.359517 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E003-INPUT_subsample-5e6.cc.plot.pdf

./E003-INPUT_subsample-5e6.cc.plot.pdf

./E003-INPUT_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E003-INPUT_subsample-5e6.tagAlign.gz 9991581 95 0.123389646938272 35 0.1232695 1500 0.1198202 1.02979 1.034821 1 E003-INPUT_subsample-5e6.tagAlign.gz 9991581 95 0.123389646938272 35 0.1232695 1500 0.1198202 1.02979 1.034821 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E003-INPUT_subsample-7.5e6.cc.plot.pdf

./E003-INPUT_subsample-7.5e6.cc.plot.pdf

./E003-INPUT_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E003-INPUT_subsample-7.5e6.tagAlign.gz 14987399 95 0.173373850011318 35 0.1732845 1500 0.1683123 1.030072 1.017962 1 E003-INPUT_subsample-7.5e6.tagAlign.gz 14987399 95 0.173373850011318 35 0.1732845 1500 0.1683123 1.030072 1.017962 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E006-INPUT_merged.cc.plot.pdf

./E006-INPUT_merged.cc.plot.pdf

./E006-INPUT_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E006-INPUT_merged.tagAlign.gz 40475729 90 0.3610429323785 35 0.3675733 1500 0.3513228 1.027667 0.5981452 0 E006-INPUT_merged.tagAlign.gz 40475729 90 0.3610429323785 35 0.3675733 1500 0.3513228 1.027667 0.5981452 0 E006-INPUT_merged.tagAlign.gz 40475729 90 0.3610429323785 35 0.3675733 1500 0.3513228 1.027667 0.5981452 0 E006-INPUT_merged.tagAlign.gz 40475729 90 0.3610429323785 35 0.3675733 1500 0.3513228 1.027667 0.5981452 0 E006-INPUT_merged.tagAlign.gz 40475729 90 0.3610429323785 35 0.3675733 1500 0.3513228 1.027667 0.5981452 0 E006-INPUT_merged.tagAlign.gz 40475729 90 0.3610429323785 35 0.3675733 1500 0.3513228 1.027667 0.5981452 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E006-INPUT_subsample-0.1e6.cc.plot.pdf

./E006-INPUT_subsample-0.1e6.cc.plot.pdf

./E006-INPUT_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E006-INPUT_subsample-0.1e6.tagAlign.gz 199884 270 0.00326251164815045 35 0.003198731 1500 0.003171158 1.028808 3.313187 2 E006-INPUT_subsample-0.1e6.tagAlign.gz 199884 270 0.00326251164815045 35 0.003198731 1500 0.003171158 1.028808 3.313187 2 E006-INPUT_subsample-0.1e6.tagAlign.gz 199884 270 0.00326251164815045 35 0.003198731 1500 0.003171158 1.028808 3.313187 2 E006-INPUT_subsample-0.1e6.tagAlign.gz 199884 270 0.00326251164815045 35 0.003198731 1500 0.003171158 1.028808 3.313187 2 E006-INPUT_subsample-0.1e6.tagAlign.gz 199884 270 0.00326251164815045 35 0.003198731 1500 0.003171158 1.028808 3.313187 2 E006-INPUT_subsample-0.1e6.tagAlign.gz 199884 270 0.00326251164815045 35 0.003198731 1500 0.003171158 1.028808 3.313187 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E006-INPUT_subsample-0.25e6.cc.plot.pdf

./E006-INPUT_subsample-0.25e6.cc.plot.pdf

./E006-INPUT_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E006-INPUT_subsample-0.25e6.tagAlign.gz 499645 910 0.00717050613742565 35 0.007193276 1500 0.006907245 1.038114 0.9203954 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E006-INPUT_subsample-0.5e6.cc.plot.pdf

./E006-INPUT_subsample-0.5e6.cc.plot.pdf

./E006-INPUT_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E006-INPUT_subsample-0.5e6.tagAlign.gz 999331 50 0.0141543049675866 35 0.01438488 1500 0.013697 1.033387 0.6648079 0 E006-INPUT_subsample-0.5e6.tagAlign.gz 999331 50 0.0141543049675866 35 0.01438488 1500 0.013697 1.033387 0.6648079 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E006-INPUT_subsample-10e6.cc.plot.pdf

./E006-INPUT_subsample-10e6.cc.plot.pdf

./E006-INPUT_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E006-INPUT_subsample-10e6.tagAlign.gz 19986059 90 0.220129894137325 35 0.2240329 1500 0.2141792 1.027784 0.6039009 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E006-INPUT_subsample-1e6.cc.plot.pdf

./E006-INPUT_subsample-1e6.cc.plot.pdf

./E006-INPUT_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E006-INPUT_subsample-1e6.tagAlign.gz 1998542 90 0.0277554096871325 35 0.0282202 1500 0.02692807 1.030724 0.6402887 0 E006-INPUT_subsample-1e6.tagAlign.gz 1998542 90 0.0277554096871325 35 0.0282202 1500 0.02692807 1.030724 0.6402887 0 E006-INPUT_subsample-1e6.tagAlign.gz 1998542 90 0.0277554096871325 35 0.0282202 1500 0.02692807 1.030724 0.6402887 0 E006-INPUT_subsample-1e6.tagAlign.gz 1998542 90 0.0277554096871325 35 0.0282202 1500 0.02692807 1.030724 0.6402887 0 E006-INPUT_subsample-1e6.tagAlign.gz 1998542 90 0.0277554096871325 35 0.0282202 1500 0.02692807 1.030724 0.6402887 0 E006-INPUT_subsample-1e6.tagAlign.gz 1998542 90 0.0277554096871325 35 0.0282202 1500 0.02692807 1.030724 0.6402887 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E006-INPUT_subsample-2.5e6.cc.plot.pdf

./E006-INPUT_subsample-2.5e6.cc.plot.pdf

./E006-INPUT_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E006-INPUT_subsample-2.5e6.tagAlign.gz 4996578 85 0.0664449477463113 35 0.06759128 1500 0.06470298 1.026922 0.6031114 0 E006-INPUT_subsample-2.5e6.tagAlign.gz 4996578 85 0.0664449477463113 35 0.06759128 1500 0.06470298 1.026922 0.6031114 0 E006-INPUT_subsample-2.5e6.tagAlign.gz 4996578 85 0.0664449477463113 35 0.06759128 1500 0.06470298 1.026922 0.6031114 0 E006-INPUT_subsample-2.5e6.tagAlign.gz 4996578 85 0.0664449477463113 35 0.06759128 1500 0.06470298 1.026922 0.6031114 0 E006-INPUT_subsample-2.5e6.tagAlign.gz 4996578 85 0.0664449477463113 35 0.06759128 1500 0.06470298 1.026922 0.6031114 0 E006-INPUT_subsample-2.5e6.tagAlign.gz 4996578 85 0.0664449477463113 35 0.06759128 1500 0.06470298 1.026922 0.6031114 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E006-INPUT_subsample-20e6.cc.plot.pdf

./E006-INPUT_subsample-20e6.cc.plot.pdf

./E006-INPUT_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E006-INPUT_subsample-20e6.tagAlign.gz 39972207 90 0.358225416920639 35 0.3646952 1500 0.3485835 1.02766 0.59844 0 E006-INPUT_subsample-20e6.tagAlign.gz 39972207 90 0.358225416920639 35 0.3646952 1500 0.3485835 1.02766 0.59844 0 E006-INPUT_subsample-20e6.tagAlign.gz 39972207 90 0.358225416920639 35 0.3646952 1500 0.3485835 1.02766 0.59844 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E006-INPUT_subsample-5e6.cc.plot.pdf

./E006-INPUT_subsample-5e6.cc.plot.pdf

./E006-INPUT_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E006-INPUT_subsample-5e6.tagAlign.gz 9993185 90 0.124265727107469 35 0.1265666 1500 0.1208651 1.028136 0.5964464 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E006-INPUT_subsample-7.5e6.cc.plot.pdf

./E006-INPUT_subsample-7.5e6.cc.plot.pdf

./E006-INPUT_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E006-INPUT_subsample-7.5e6.tagAlign.gz 14989440 85 0.175087120119009 35 0.1783781 1500 0.170334 1.027905 0.5908826 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E017-INPUT_merged.cc.plot.pdf

./E017-INPUT_merged.cc.plot.pdf

./E017-INPUT_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E017-INPUT_merged.tagAlign.gz 129022834 110 0.63893233596776 35 0.6381255 1500 0.6213278 1.028334 1.04803 1 E017-INPUT_merged.tagAlign.gz 129022834 110 0.63893233596776 35 0.6381255 1500 0.6213278 1.028334 1.04803 1 E017-INPUT_merged.tagAlign.gz 129022834 110 0.63893233596776 35 0.6381255 1500 0.6213278 1.028334 1.04803 1 E017-INPUT_merged.tagAlign.gz 129022834 110 0.63893233596776 35 0.6381255 1500 0.6213278 1.028334 1.04803 1 E017-INPUT_merged.tagAlign.gz 129022834 110 0.63893233596776 35 0.6381255 1500 0.6213278 1.028334 1.04803 1 E017-INPUT_merged.tagAlign.gz 129022834 110 0.63893233596776 35 0.6381255 1500 0.6213278 1.028334 1.04803 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E017-INPUT_subsample-0.1e6.cc.plot.pdf

./E017-INPUT_subsample-0.1e6.cc.plot.pdf

./E017-INPUT_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E017-INPUT_subsample-0.1e6.tagAlign.gz 199750 1190 0.0032351542695262 35 0.003185455 1500 0.003057328 1.058164 1.387891 1 E017-INPUT_subsample-0.1e6.tagAlign.gz 199750 1190 0.0032351542695262 35 0.003185455 1500 0.003057328 1.058164 1.387891 1 E017-INPUT_subsample-0.1e6.tagAlign.gz 199750 1190 0.0032351542695262 35 0.003185455 1500 0.003057328 1.058164 1.387891 1 E017-INPUT_subsample-0.1e6.tagAlign.gz 199750 1190 0.0032351542695262 35 0.003185455 1500 0.003057328 1.058164 1.387891 1 E017-INPUT_subsample-0.1e6.tagAlign.gz 199750 1190 0.0032351542695262 35 0.003185455 1500 0.003057328 1.058164 1.387891 1 E017-INPUT_subsample-0.1e6.tagAlign.gz 199750 1190 0.0032351542695262 35 0.003185455 1500 0.003057328 1.058164 1.387891 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E017-INPUT_subsample-0.25e6.cc.plot.pdf

./E017-INPUT_subsample-0.25e6.cc.plot.pdf

./E017-INPUT_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E017-INPUT_subsample-0.25e6.tagAlign.gz 499351 125 0.00721438107338954 35 0.007373615 1500 0.00689227 1.046735 0.6691901 0 E017-INPUT_subsample-0.25e6.tagAlign.gz 499351 125 0.00721438107338954 35 0.007373615 1500 0.00689227 1.046735 0.6691901 0 E017-INPUT_subsample-0.25e6.tagAlign.gz 499351 125 0.00721438107338954 35 0.007373615 1500 0.00689227 1.046735 0.6691901 0 E017-INPUT_subsample-0.25e6.tagAlign.gz 499351 125 0.00721438107338954 35 0.007373615 1500 0.00689227 1.046735 0.6691901 0 E017-INPUT_subsample-0.25e6.tagAlign.gz 499351 125 0.00721438107338954 35 0.007373615 1500 0.00689227 1.046735 0.6691901 0 E017-INPUT_subsample-0.25e6.tagAlign.gz 499351 125 0.00721438107338954 35 0.007373615 1500 0.00689227 1.046735 0.6691901 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E017-INPUT_subsample-0.5e6.cc.plot.pdf

./E017-INPUT_subsample-0.5e6.cc.plot.pdf

./E017-INPUT_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E017-INPUT_subsample-0.5e6.tagAlign.gz 998673 135 0.0142235985997979 35 0.01433383 1500 0.01376189 1.03355 0.807265 0 E017-INPUT_subsample-0.5e6.tagAlign.gz 998673 135 0.0142235985997979 35 0.01433383 1500 0.01376189 1.03355 0.807265 0 E017-INPUT_subsample-0.5e6.tagAlign.gz 998673 135 0.0142235985997979 35 0.01433383 1500 0.01376189 1.03355 0.807265 0 E017-INPUT_subsample-0.5e6.tagAlign.gz 998673 135 0.0142235985997979 35 0.01433383 1500 0.01376189 1.03355 0.807265 0 E017-INPUT_subsample-0.5e6.tagAlign.gz 998673 135 0.0142235985997979 35 0.01433383 1500 0.01376189 1.03355 0.807265 0 E017-INPUT_subsample-0.5e6.tagAlign.gz 998673 135 0.0142235985997979 35 0.01433383 1500 0.01376189 1.03355 0.807265 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E017-INPUT_subsample-10e6.cc.plot.pdf

./E017-INPUT_subsample-10e6.cc.plot.pdf

./E017-INPUT_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E017-INPUT_subsample-10e6.tagAlign.gz 19973992 95 0.221017970030334 35 0.2238505 1500 0.2142571 1.031555 0.7047435 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E017-INPUT_subsample-1e6.cc.plot.pdf

./E017-INPUT_subsample-1e6.cc.plot.pdf

./E017-INPUT_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E017-INPUT_subsample-1e6.tagAlign.gz 1997414 155 0.0279009384417026 35 0.02821736 1500 0.02702374 1.03246 0.7349041 0 E017-INPUT_subsample-1e6.tagAlign.gz 1997414 155 0.0279009384417026 35 0.02821736 1500 0.02702374 1.03246 0.7349041 0 E017-INPUT_subsample-1e6.tagAlign.gz 1997414 155 0.0279009384417026 35 0.02821736 1500 0.02702374 1.03246 0.7349041 0 E017-INPUT_subsample-1e6.tagAlign.gz 1997414 155 0.0279009384417026 35 0.02821736 1500 0.02702374 1.03246 0.7349041 0 E017-INPUT_subsample-1e6.tagAlign.gz 1997414 155 0.0279009384417026 35 0.02821736 1500 0.02702374 1.03246 0.7349041 0 E017-INPUT_subsample-1e6.tagAlign.gz 1997414 155 0.0279009384417026 35 0.02821736 1500 0.02702374 1.03246 0.7349041 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E017-INPUT_subsample-2.5e6.cc.plot.pdf

./E017-INPUT_subsample-2.5e6.cc.plot.pdf

./E017-INPUT_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E017-INPUT_subsample-2.5e6.tagAlign.gz 4993645 105 0.066824307114903 35 0.06776434 1500 0.06471226 1.032637 0.6920034 0 E017-INPUT_subsample-2.5e6.tagAlign.gz 4993645 105 0.066824307114903 35 0.06776434 1500 0.06471226 1.032637 0.6920034 0 E017-INPUT_subsample-2.5e6.tagAlign.gz 4993645 105 0.066824307114903 35 0.06776434 1500 0.06471226 1.032637 0.6920034 0 E017-INPUT_subsample-2.5e6.tagAlign.gz 4993645 105 0.066824307114903 35 0.06776434 1500 0.06471226 1.032637 0.6920034 0 E017-INPUT_subsample-2.5e6.tagAlign.gz 4993645 105 0.066824307114903 35 0.06776434 1500 0.06471226 1.032637 0.6920034 0 E017-INPUT_subsample-2.5e6.tagAlign.gz 4993645 105 0.066824307114903 35 0.06776434 1500 0.06471226 1.032637 0.6920034 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E017-INPUT_subsample-20e6.cc.plot.pdf

./E017-INPUT_subsample-20e6.cc.plot.pdf

./E017-INPUT_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E017-INPUT_subsample-20e6.tagAlign.gz 39947876 110 0.359608128285068 35 0.3621751 1500 0.3491346 1.029999 0.8031557 0 E017-INPUT_subsample-20e6.tagAlign.gz 39947876 110 0.359608128285068 35 0.3621751 1500 0.3491346 1.029999 0.8031557 0 E017-INPUT_subsample-20e6.tagAlign.gz 39947876 110 0.359608128285068 35 0.3621751 1500 0.3491346 1.029999 0.8031557 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E017-INPUT_subsample-5e6.cc.plot.pdf

./E017-INPUT_subsample-5e6.cc.plot.pdf

./E017-INPUT_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E017-INPUT_subsample-5e6.tagAlign.gz 9987111 115 0.12484000582784 35 0.1264835 1500 0.1210325 1.031458 0.6984992 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E017-INPUT_subsample-7.5e6.cc.plot.pdf

./E017-INPUT_subsample-7.5e6.cc.plot.pdf

./E017-INPUT_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E017-INPUT_subsample-7.5e6.tagAlign.gz 14980616 120 0.175892045700485 35 0.1782496 1500 0.1703721 1.0324 0.7007237 0 E017-INPUT_subsample-7.5e6.tagAlign.gz 14980616 120 0.175892045700485 35 0.1782496 1500 0.1703721 1.0324 0.7007237 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E026-INPUT_merged.cc.plot.pdf

./E026-INPUT_merged.cc.plot.pdf

./E026-INPUT_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E026-INPUT_merged.tagAlign.gz 146700813 125 0.664728231505906 35 0.6693501 1500 0.6598261 1.007429 0.514713 0 E026-INPUT_merged.tagAlign.gz 146700813 125 0.664728231505906 35 0.6693501 1500 0.6598261 1.007429 0.514713 0 E026-INPUT_merged.tagAlign.gz 146700813 125 0.664728231505906 35 0.6693501 1500 0.6598261 1.007429 0.514713 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E026-INPUT_subsample-0.1e6.cc.plot.pdf

./E026-INPUT_subsample-0.1e6.cc.plot.pdf

./E026-INPUT_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E026-INPUT_subsample-0.1e6.tagAlign.gz 199899 1145 0.00323752306782728 40 0.003087555 1500 0.003060261 1.057924 6.494635 2 E026-INPUT_subsample-0.1e6.tagAlign.gz 199877 -245 0.00327931846475816 30 0.00313591 1500 0.003076016 1.066093 3.394369 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E026-INPUT_subsample-0.25e6.cc.plot.pdf

./E026-INPUT_subsample-0.25e6.cc.plot.pdf

./E026-INPUT_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E026-INPUT_subsample-0.25e6.tagAlign.gz 499708 1260 0.00704701181407316 30 0.006985828 1500 0.007021458 1.003639 -0.7171925 NA
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E026-INPUT_subsample-0.5e6.cc.plot.pdf

./E026-INPUT_subsample-0.5e6.cc.plot.pdf

./E026-INPUT_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E026-INPUT_subsample-0.5e6.tagAlign.gz 999423 210 0.0137217059095369 35 0.01387751 1500 0.0136152 1.007823 0.4060412 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E026-INPUT_subsample-10e6.cc.plot.pdf

./E026-INPUT_subsample-10e6.cc.plot.pdf

./E026-INPUT_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E026-INPUT_subsample-10e6.tagAlign.gz 19988256 100 0.216068800444681 35 0.2193569 1500 0.2141197 1.009103 0.3721661 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E026-INPUT_subsample-1e6.cc.plot.pdf

./E026-INPUT_subsample-1e6.cc.plot.pdf

./E026-INPUT_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E026-INPUT_subsample-1e6.tagAlign.gz 1998810 155 0.0270889337174789 35 0.02741924 1500 0.02668819 1.015016 0.5481768 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E026-INPUT_subsample-2.5e6.cc.plot.pdf

./E026-INPUT_subsample-2.5e6.cc.plot.pdf

./E026-INPUT_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E026-INPUT_subsample-2.5e6.tagAlign.gz 4997032 65 0.0648001087642684 35 0.06570098 1500 0.06415857 1.009999 0.4159321 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E026-INPUT_subsample-20e6.cc.plot.pdf

./E026-INPUT_subsample-20e6.cc.plot.pdf

./E026-INPUT_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E026-INPUT_subsample-20e6.tagAlign.gz 39976697 150 0.354106115175866 35 0.3596514 1500 0.3510392 1.008737 0.3561153 -1 E026-INPUT_subsample-20e6.tagAlign.gz 39976697 150 0.354106115175866 35 0.3596514 1500 0.3510392 1.008737 0.3561153 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E026-INPUT_subsample-30e6.cc.plot.pdf

./E026-INPUT_subsample-30e6.cc.plot.pdf

./E026-INPUT_subsample-30e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E026-INPUT_subsample-30e6.tagAlign.gz 59965342 145 0.450053239251792 35 0.4565587 1500 0.4462457 1.008532 0.3692009 -1 E026-INPUT_subsample-30e6.tagAlign.gz 59965342 145 0.450053239251792 35 0.4565587 1500 0.4462457 1.008532 0.3692009 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E026-INPUT_subsample-5e6.cc.plot.pdf

./E026-INPUT_subsample-5e6.cc.plot.pdf

./E026-INPUT_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E026-INPUT_subsample-5e6.tagAlign.gz 9994334 140 0.121432245679181 35 0.1232714 1500 0.1203372 1.0091 0.3732043 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E026-INPUT_subsample-7.5e6.cc.plot.pdf

./E026-INPUT_subsample-7.5e6.cc.plot.pdf

./E026-INPUT_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E026-INPUT_subsample-7.5e6.tagAlign.gz 14991245 130 0.171462623225684 35 0.1741241 1500 0.1699331 1.009001 0.364957 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E029-INPUT_merged.cc.plot.pdf

./E029-INPUT_merged.cc.plot.pdf

./E029-INPUT_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E029-INPUT_merged.tagAlign.gz 20527972 175 0.223256735424399 35 0.2302816 1500 0.2198308 1.015584 0.3278149 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E029-INPUT_subsample-0.1e6.cc.plot.pdf

./E029-INPUT_subsample-0.1e6.cc.plot.pdf

./E029-INPUT_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E029-INPUT_subsample-0.1e6.tagAlign.gz 199909 1215 0.00332580602582535 35 0.003069719 1500 0.00301723 1.102271 5.878866 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E029-INPUT_subsample-0.25e6.cc.plot.pdf

./E029-INPUT_subsample-0.25e6.cc.plot.pdf

./E029-INPUT_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E029-INPUT_subsample-0.25e6.tagAlign.gz 499775 265 0.00711241660013052 35 0.007297278 1500 0.006959565 1.021963 0.4526088 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E029-INPUT_subsample-0.5e6.cc.plot.pdf

./E029-INPUT_subsample-0.5e6.cc.plot.pdf

./E029-INPUT_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E029-INPUT_subsample-0.5e6.tagAlign.gz 999495 215 0.0139768277911661 35 0.01428046 1500 0.0136711 1.022363 0.5017268 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E029-INPUT_subsample-10e6.cc.plot.pdf

./E029-INPUT_subsample-10e6.cc.plot.pdf

./E029-INPUT_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E029-INPUT_subsample-10e6.tagAlign.gz 19990115 155 0.218710105413008 35 0.2255859 1500 0.2153473 1.015616 0.3284442 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E029-INPUT_subsample-1e6.cc.plot.pdf

./E029-INPUT_subsample-1e6.cc.plot.pdf

./E029-INPUT_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E029-INPUT_subsample-1e6.tagAlign.gz 1998973 170 0.0274567719914266 35 0.02826695 1500 0.02694149 1.019126 0.388758 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E029-INPUT_subsample-2.5e6.cc.plot.pdf

./E029-INPUT_subsample-2.5e6.cc.plot.pdf

./E029-INPUT_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E029-INPUT_subsample-2.5e6.tagAlign.gz 4997578 175 0.0658013628463611 35 0.06774596 1500 0.0646656 1.017564 0.3687116 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E029-INPUT_subsample-5e6.cc.plot.pdf

./E029-INPUT_subsample-5e6.cc.plot.pdf

./E029-INPUT_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E029-INPUT_subsample-5e6.tagAlign.gz 9995042 185 0.123164609748689 35 0.1270368 1500 0.1212434 1.015846 0.3316206 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E029-INPUT_subsample-7.5e6.cc.plot.pdf

./E029-INPUT_subsample-7.5e6.cc.plot.pdf

./E029-INPUT_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E029-INPUT_subsample-7.5e6.tagAlign.gz 14992579 155 0.173755031544365 35 0.1792771 1500 0.1710814 1.015628 0.3262212 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E032-INPUT_merged.cc.plot.pdf

./E032-INPUT_merged.cc.plot.pdf

./E032-INPUT_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E032-INPUT_merged.tagAlign.gz 29746474 -5 0.292550700497411 35 0.298456 1500 0.2906678 1.006478 0.2417675 -2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E032-INPUT_subsample-0.1e6.cc.plot.pdf

./E032-INPUT_subsample-0.1e6.cc.plot.pdf

./E032-INPUT_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E032-INPUT_subsample-0.1e6.tagAlign.gz 199882 775 0.00327881472481051 40 0.003143869 1500 0.003100459 1.057526 4.108657 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E032-INPUT_subsample-0.25e6.cc.plot.pdf

./E032-INPUT_subsample-0.25e6.cc.plot.pdf

./E032-INPUT_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E032-INPUT_subsample-0.25e6.tagAlign.gz 499705 370 0.00707776420334662 30 0.007040387 1500 0.006916979 1.023245 1.30288 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E032-INPUT_subsample-0.5e6.cc.plot.pdf

./E032-INPUT_subsample-0.5e6.cc.plot.pdf

./E032-INPUT_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E032-INPUT_subsample-0.5e6.tagAlign.gz 999430 125 0.0138743803184218 35 0.01410928 1500 0.01366715 1.015163 0.4687118 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E032-INPUT_subsample-10e6.cc.plot.pdf

./E032-INPUT_subsample-10e6.cc.plot.pdf

./E032-INPUT_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E032-INPUT_subsample-10e6.tagAlign.gz 19988447 90 0.217716084310048 35 0.2220502 1500 0.2163388 1.006366 0.2411454 -2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E032-INPUT_subsample-1e6.cc.plot.pdf

./E032-INPUT_subsample-1e6.cc.plot.pdf

./E032-INPUT_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E032-INPUT_subsample-1e6.tagAlign.gz 1998816 75 0.0272520889705133 35 0.02785205 1500 0.02696596 1.010611 0.3229112 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E032-INPUT_subsample-2.5e6.cc.plot.pdf

./E032-INPUT_subsample-2.5e6.cc.plot.pdf

./E032-INPUT_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E032-INPUT_subsample-2.5e6.tagAlign.gz 4997139 125 0.0652770308431795 35 0.06655112 1500 0.06478569 1.007584 0.2783108 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E032-INPUT_subsample-5e6.cc.plot.pdf

./E032-INPUT_subsample-5e6.cc.plot.pdf

./E032-INPUT_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E032-INPUT_subsample-5e6.tagAlign.gz 9994234 115 0.122396743976473 35 0.1248145 1500 0.1216149 1.006429 0.2443563 -2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E032-INPUT_subsample-7.5e6.cc.plot.pdf

./E032-INPUT_subsample-7.5e6.cc.plot.pdf

./E032-INPUT_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E032-INPUT_subsample-7.5e6.tagAlign.gz 14991391 -5 0.17284993120684 35 0.1762432 1500 0.1717187 1.006588 0.2500237 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E037-INPUT_merged.cc.plot.pdf

./E037-INPUT_merged.cc.plot.pdf

./E037-INPUT_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E037-INPUT_merged.tagAlign.gz 101466796 200 0.579317566945753 35 0.58448 1500 0.5743069 1.008725 0.4925388 -1 E037-INPUT_merged.tagAlign.gz 101466796 200 0.579317566945753 35 0.58448 1500 0.5743069 1.008725 0.4925388 -1 E037-INPUT_merged.tagAlign.gz 101466796 200 0.579317566945753 35 0.58448 1500 0.5743069 1.008725 0.4925388 -1 E037-INPUT_merged.tagAlign.gz 101466796 200 0.579317566945753 35 0.58448 1500 0.5743069 1.008725 0.4925388 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E037-INPUT_subsample-0.1e6.cc.plot.pdf

./E037-INPUT_subsample-0.1e6.cc.plot.pdf

./E037-INPUT_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E037-INPUT_subsample-0.1e6.tagAlign.gz 199913 -165 0.00322909368805747 30 0.003081386 1500 0.00317952 1.015592 -0.5051586 NA
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E037-INPUT_subsample-0.25e6.cc.plot.pdf

./E037-INPUT_subsample-0.25e6.cc.plot.pdf

./E037-INPUT_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E037-INPUT_subsample-0.25e6.tagAlign.gz 499768 800 0.00708279110038443 35 0.007099369 1500 0.006938093 1.020856 0.8972077 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E037-INPUT_subsample-0.5e6.cc.plot.pdf

./E037-INPUT_subsample-0.5e6.cc.plot.pdf

./E037-INPUT_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E037-INPUT_subsample-0.5e6.tagAlign.gz 999558 205 0.0138109484429079 35 0.0139451 1500 0.01361359 1.014497 0.5953266 0 E037-INPUT_subsample-0.5e6.tagAlign.gz 999558 205 0.0138109484429079 35 0.0139451 1500 0.01361359 1.014497 0.5953266 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E037-INPUT_subsample-10e6.cc.plot.pdf

./E037-INPUT_subsample-10e6.cc.plot.pdf

./E037-INPUT_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E037-INPUT_subsample-10e6.tagAlign.gz 19990981 200 0.216538265038488 35 0.2202327 1500 0.2144372 1.009798 0.3625351 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E037-INPUT_subsample-1e6.cc.plot.pdf

./E037-INPUT_subsample-1e6.cc.plot.pdf

./E037-INPUT_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E037-INPUT_subsample-1e6.tagAlign.gz 1999100 225 0.0271673300141973 35 0.02757173 1500 0.0267783 1.014528 0.4903121 -1 E037-INPUT_subsample-1e6.tagAlign.gz 1999100 225 0.0271673300141973 35 0.02757173 1500 0.0267783 1.014528 0.4903121 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E037-INPUT_subsample-2.5e6.cc.plot.pdf

./E037-INPUT_subsample-2.5e6.cc.plot.pdf

./E037-INPUT_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E037-INPUT_subsample-2.5e6.tagAlign.gz 4997686 180 0.0650483847876883 35 0.06595579 1500 0.06428732 1.011838 0.4561448 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E037-INPUT_subsample-20e6.cc.plot.pdf

./E037-INPUT_subsample-20e6.cc.plot.pdf

./E037-INPUT_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E037-INPUT_subsample-20e6.tagAlign.gz 39981922 200 0.354684440551507 35 0.3604674 1500 0.3512364 1.009817 0.3735258 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E037-INPUT_subsample-5e6.cc.plot.pdf

./E037-INPUT_subsample-5e6.cc.plot.pdf

./E037-INPUT_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E037-INPUT_subsample-5e6.tagAlign.gz 9995427 225 0.121851692838339 35 0.123819 1500 0.1205787 1.010558 0.392872 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E037-INPUT_subsample-7.5e6.cc.plot.pdf

./E037-INPUT_subsample-7.5e6.cc.plot.pdf

./E037-INPUT_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E037-INPUT_subsample-7.5e6.tagAlign.gz 14993271 205 0.172001893420991 35 0.1747593 1500 0.1703088 1.009941 0.38043 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E038-INPUT_merged.cc.plot.pdf

./E038-INPUT_merged.cc.plot.pdf

./E038-INPUT_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E038-INPUT_merged.tagAlign.gz 56600712 215 0.437901758838968 35 0.4460707 1500 0.4324083 1.012704 0.4020869 -1 E038-INPUT_merged.tagAlign.gz 56600712 215 0.437901758838968 35 0.4460707 1500 0.4324083 1.012704 0.4020869 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E038-INPUT_subsample-0.1e6.cc.plot.pdf

./E038-INPUT_subsample-0.1e6.cc.plot.pdf

./E038-INPUT_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E038-INPUT_subsample-0.1e6.tagAlign.gz 199902 -380 0.00327134930022045 40 0.003109366 1500 0.003060351 1.068946 4.304764 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E038-INPUT_subsample-0.25e6.cc.plot.pdf

./E038-INPUT_subsample-0.25e6.cc.plot.pdf

./E038-INPUT_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E038-INPUT_subsample-0.25e6.tagAlign.gz 499751 50 0.00719078401698263 35 0.007145442 1500 0.006895082 1.042886 1.181105 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E038-INPUT_subsample-0.5e6.cc.plot.pdf

./E038-INPUT_subsample-0.5e6.cc.plot.pdf

./E038-INPUT_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E038-INPUT_subsample-0.5e6.tagAlign.gz 999499 110 0.0139031760533648 35 0.01408279 1500 0.01367047 1.017022 0.56438 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E038-INPUT_subsample-10e6.cc.plot.pdf

./E038-INPUT_subsample-10e6.cc.plot.pdf

./E038-INPUT_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E038-INPUT_subsample-10e6.tagAlign.gz 19990484 220 0.217820310433943 35 0.2217342 1500 0.215096 1.012666 0.4103963 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E038-INPUT_subsample-1e6.cc.plot.pdf

./E038-INPUT_subsample-1e6.cc.plot.pdf

./E038-INPUT_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E038-INPUT_subsample-1e6.tagAlign.gz 1999043 210 0.027300482193877 35 0.02785892 1500 0.02698354 1.011746 0.3620608 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E038-INPUT_subsample-20e6.cc.plot.pdf

./E038-INPUT_subsample-20e6.cc.plot.pdf

./E038-INPUT_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E038-INPUT_subsample-20e6.tagAlign.gz 39981031 215 0.356155953269245 35 0.3627189 1500 0.3517202 1.012612 0.403298 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E039-INPUT_merged.cc.plot.pdf

./E039-INPUT_merged.cc.plot.pdf

./E039-INPUT_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E039-INPUT_merged.tagAlign.gz 57581914 205 0.439199898722303 35 0.4470318 1500 0.4353094 1.008937 0.3318834 -1 E039-INPUT_merged.tagAlign.gz 57581914 205 0.439199898722303 35 0.4470318 1500 0.4353094 1.008937 0.3318834 -1 E039-INPUT_merged.tagAlign.gz 57581914 205 0.439199898722303 35 0.4470318 1500 0.4353094 1.008937 0.3318834 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E039-INPUT_subsample-0.1e6.cc.plot.pdf

./E039-INPUT_subsample-0.1e6.cc.plot.pdf

./E039-INPUT_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E039-INPUT_subsample-0.1e6.tagAlign.gz 199954 525 0.00322737370075015 40 0.003114512 1500 0.003070109 1.051224 3.541784 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E039-INPUT_subsample-0.25e6.cc.plot.pdf

./E039-INPUT_subsample-0.25e6.cc.plot.pdf

./E039-INPUT_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E039-INPUT_subsample-0.25e6.tagAlign.gz 499872 755 0.00706416629453123 40 0.007052674 1500 0.006848269 1.031526 1.056224 1 E039-INPUT_subsample-0.25e6.tagAlign.gz 499859 -285 0.00699892512941863 35 0.007085996 1500 0.006822192 1.025906 0.66994 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E039-INPUT_subsample-0.5e6.cc.plot.pdf

./E039-INPUT_subsample-0.5e6.cc.plot.pdf

./E039-INPUT_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E039-INPUT_subsample-0.5e6.tagAlign.gz 999700 220 0.0137409639032416 35 0.01388689 1500 0.01347067 1.020065 0.6493981 0 E039-INPUT_subsample-0.5e6.tagAlign.gz 999725 205 0.0137759707858323 35 0.01392768 1500 0.01350573 1.020009 0.6404526 0 E039-INPUT_subsample-0.5e6.tagAlign.gz 999725 205 0.0137759707858323 35 0.01392768 1500 0.01350573 1.020009 0.6404526 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E039-INPUT_subsample-10e6.cc.plot.pdf

./E039-INPUT_subsample-10e6.cc.plot.pdf

./E039-INPUT_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E039-INPUT_subsample-10e6.tagAlign.gz 19994422 185 0.215574935694553 35 0.2193888 1500 0.213655 1.008986 0.3348451 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E039-INPUT_subsample-1e6.cc.plot.pdf

./E039-INPUT_subsample-1e6.cc.plot.pdf

./E039-INPUT_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E039-INPUT_subsample-1e6.tagAlign.gz 1999464 225 0.0269733194349528 35 0.02728549 1500 0.02677002 1.007594 0.3943941 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E039-INPUT_subsample-2.5e6.cc.plot.pdf

./E039-INPUT_subsample-2.5e6.cc.plot.pdf

./E039-INPUT_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E039-INPUT_subsample-2.5e6.tagAlign.gz 4998595 60 0.0646714199458356 35 0.06576737 1500 0.06394706 1.011327 0.3979302 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E039-INPUT_subsample-20e6.cc.plot.pdf

./E039-INPUT_subsample-20e6.cc.plot.pdf

./E039-INPUT_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E039-INPUT_subsample-20e6.tagAlign.gz 39989002 215 0.353392972983707 35 0.3597731 1500 0.3502064 1.009099 0.3330867 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E039-INPUT_subsample-5e6.cc.plot.pdf

./E039-INPUT_subsample-5e6.cc.plot.pdf

./E039-INPUT_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E039-INPUT_subsample-5e6.tagAlign.gz 9997141 210 0.121165844382512 35 0.1233378 1500 0.1200141 1.009597 0.3465234 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E039-INPUT_subsample-7.5e6.cc.plot.pdf

./E039-INPUT_subsample-7.5e6.cc.plot.pdf

./E039-INPUT_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E039-INPUT_subsample-7.5e6.tagAlign.gz 14995833 210 0.171127802133436 35 0.1741095 1500 0.1695999 1.009009 0.3388179 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E040-INPUT_merged.cc.plot.pdf

./E040-INPUT_merged.cc.plot.pdf

./E040-INPUT_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E040-INPUT_merged.tagAlign.gz 42060400 215 0.364236567138307 35 0.376631 1500 0.3606732 1.00988 0.2233005 -2 E040-INPUT_merged.tagAlign.gz 42060400 215 0.364236567138307 35 0.376631 1500 0.3606732 1.00988 0.2233005 -2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E040-INPUT_subsample-0.1e6.cc.plot.pdf

./E040-INPUT_subsample-0.1e6.cc.plot.pdf

./E040-INPUT_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E040-INPUT_subsample-0.1e6.tagAlign.gz 199957 1465 0.00324116473468243 35 0.003218274 1500 0.0030754 1.0539 1.160217 1 E040-INPUT_subsample-0.1e6.tagAlign.gz 199953 -455 0.00327740322897495 30 0.00315341 1500 0.003081243 1.063663 2.71814 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E040-INPUT_subsample-0.25e6.cc.plot.pdf

./E040-INPUT_subsample-0.25e6.cc.plot.pdf

./E040-INPUT_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E040-INPUT_subsample-0.25e6.tagAlign.gz 499851 -235 0.00706107801037732 35 0.007235132 1500 0.006822037 1.03504 0.5786587 0 E040-INPUT_subsample-0.25e6.tagAlign.gz 499851 -235 0.00706107801037732 35 0.007235132 1500 0.006822037 1.03504 0.5786587 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E040-INPUT_subsample-0.5e6.cc.plot.pdf

./E040-INPUT_subsample-0.5e6.cc.plot.pdf

./E040-INPUT_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E040-INPUT_subsample-0.5e6.tagAlign.gz 999787 320 0.0138212500771193 35 0.0142363 1500 0.0135789 1.017847 0.3686462 -1 E040-INPUT_subsample-0.5e6.tagAlign.gz 999787 320 0.0138212500771193 35 0.0142363 1500 0.0135789 1.017847 0.3686462 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E040-INPUT_subsample-10e6.cc.plot.pdf

./E040-INPUT_subsample-10e6.cc.plot.pdf

./E040-INPUT_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E040-INPUT_subsample-10e6.tagAlign.gz 19995070 215 0.215810840744367 35 0.2232107 1500 0.2137095 1.009833 0.2211622 -2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E040-INPUT_subsample-1e6.cc.plot.pdf

./E040-INPUT_subsample-1e6.cc.plot.pdf

./E040-INPUT_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E040-INPUT_subsample-1e6.tagAlign.gz 1999487 110 0.0270811629912377 35 0.028038 1500 0.02676248 1.011908 0.249846 -2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E040-INPUT_subsample-2.5e6.cc.plot.pdf

./E040-INPUT_subsample-2.5e6.cc.plot.pdf

./E040-INPUT_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E040-INPUT_subsample-2.5e6.tagAlign.gz 4998791 220 0.0648721106380765 35 0.06709578 1500 0.0641869 1.010675 0.2355576 -2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E040-INPUT_subsample-5e6.cc.plot.pdf

./E040-INPUT_subsample-5e6.cc.plot.pdf

./E040-INPUT_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E040-INPUT_subsample-5e6.tagAlign.gz 9997501 195 0.121457613770141 35 0.1256247 1500 0.1201889 1.010556 0.2334038 -2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E040-INPUT_subsample-7.5e6.cc.plot.pdf

./E040-INPUT_subsample-7.5e6.cc.plot.pdf

./E040-INPUT_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E040-INPUT_subsample-7.5e6.tagAlign.gz 14996347 215 0.171382230492855 35 0.1773865 1500 0.1696811 1.010026 0.2207731 -2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E041-INPUT_merged.cc.plot.pdf

./E041-INPUT_merged.cc.plot.pdf

./E041-INPUT_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E041-INPUT_merged.tagAlign.gz 66097637 210 0.473746165800596 35 0.4817893 1500 0.469408 1.009242 0.3503789 -1 E041-INPUT_merged.tagAlign.gz 66097637 210 0.473746165800596 35 0.4817893 1500 0.469408 1.009242 0.3503789 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E041-INPUT_subsample-0.1e6.cc.plot.pdf

./E041-INPUT_subsample-0.1e6.cc.plot.pdf

./E041-INPUT_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E041-INPUT_subsample-0.1e6.tagAlign.gz 199969 740 0.00323822580173371 35 0.003067342 1500 0.002995663 1.080971 3.384038 2 E041-INPUT_subsample-0.1e6.tagAlign.gz 199967 -150 0.00323200180046698 35 0.003140583 1500 0.002872918 1.124989 1.341539 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E041-INPUT_subsample-0.25e6.cc.plot.pdf

./E041-INPUT_subsample-0.25e6.cc.plot.pdf

./E041-INPUT_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E041-INPUT_subsample-0.25e6.tagAlign.gz 499918 -80 0.00709346890437687 35 0.007018855 1500 0.006888451 1.029763 1.572173 2 E041-INPUT_subsample-0.25e6.tagAlign.gz 499914 275 0.00708982113878984 40 0.007060498 1500 0.006799229 1.042739 1.112234 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E041-INPUT_subsample-0.5e6.cc.plot.pdf

./E041-INPUT_subsample-0.5e6.cc.plot.pdf

./E041-INPUT_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E041-INPUT_subsample-0.5e6.tagAlign.gz 999835 50 0.0138089008741065 30 0.01391364 1500 0.01346576 1.025483 0.7661549 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E041-INPUT_subsample-10e6.cc.plot.pdf

./E041-INPUT_subsample-10e6.cc.plot.pdf

./E041-INPUT_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E041-INPUT_subsample-10e6.tagAlign.gz 19996884 210 0.216084057592448 35 0.2197076 1500 0.2140812 1.009356 0.3559767 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E041-INPUT_subsample-1e6.cc.plot.pdf

./E041-INPUT_subsample-1e6.cc.plot.pdf

./E041-INPUT_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E041-INPUT_subsample-1e6.tagAlign.gz 1999690 290 0.027066246656334 35 0.02742791 1500 0.02672674 1.012703 0.4842033 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E041-INPUT_subsample-2.5e6.cc.plot.pdf

./E041-INPUT_subsample-2.5e6.cc.plot.pdf

./E041-INPUT_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E041-INPUT_subsample-2.5e6.tagAlign.gz 4999203 200 0.0647302555129942 35 0.0657293 1500 0.06418624 1.008476 0.3525548 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E041-INPUT_subsample-20e6.cc.plot.pdf

./E041-INPUT_subsample-20e6.cc.plot.pdf

./E041-INPUT_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E041-INPUT_subsample-20e6.tagAlign.gz 39993655 210 0.354142819016693 35 0.3601406 1500 0.3508708 1.009326 0.3529791 -1 E041-INPUT_subsample-20e6.tagAlign.gz 39993655 210 0.354142819016693 35 0.3601406 1500 0.3508708 1.009326 0.3529791 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E041-INPUT_subsample-5e6.cc.plot.pdf

./E041-INPUT_subsample-5e6.cc.plot.pdf

./E041-INPUT_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E041-INPUT_subsample-5e6.tagAlign.gz 9998397 210 0.121467033427901 35 0.1234483 1500 0.1203488 1.009291 0.3607723 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E041-INPUT_subsample-7.5e6.cc.plot.pdf

./E041-INPUT_subsample-7.5e6.cc.plot.pdf

./E041-INPUT_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E041-INPUT_subsample-7.5e6.tagAlign.gz 14997576 220 0.17154338414767 35 0.1744724 1500 0.1699047 1.009645 0.3587562 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E042-INPUT_merged.cc.plot.pdf

./E042-INPUT_merged.cc.plot.pdf

./E042-INPUT_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E042-INPUT_merged.tagAlign.gz 67908427 180 0.480824046099978 35 0.4883924 1500 0.4762597 1.009584 0.3762013 -1 E042-INPUT_merged.tagAlign.gz 67908427 180 0.480824046099978 35 0.4883924 1500 0.4762597 1.009584 0.3762013 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E042-INPUT_subsample-0.1e6.cc.plot.pdf

./E042-INPUT_subsample-0.1e6.cc.plot.pdf

./E042-INPUT_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E042-INPUT_subsample-0.1e6.tagAlign.gz 199975 930 0.00332208434105393 30 0.003087149 1500 0.003097251 1.072591 -22.25716 NA
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E042-INPUT_subsample-0.25e6.cc.plot.pdf

./E042-INPUT_subsample-0.25e6.cc.plot.pdf

./E042-INPUT_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E042-INPUT_subsample-0.25e6.tagAlign.gz 499899 1440 0.00702731613755465 35 0.007033264 1500 0.006823507 1.029869 0.9716418 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E042-INPUT_subsample-0.5e6.cc.plot.pdf

./E042-INPUT_subsample-0.5e6.cc.plot.pdf

./E042-INPUT_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E042-INPUT_subsample-0.5e6.tagAlign.gz 999786 205 0.0137527416227005 35 0.01395409 1500 0.01351211 1.017809 0.5444481 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E042-INPUT_subsample-10e6.cc.plot.pdf

./E042-INPUT_subsample-10e6.cc.plot.pdf

./E042-INPUT_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E042-INPUT_subsample-10e6.tagAlign.gz 19995653 180 0.216170234787901 35 0.219562 1500 0.2140913 1.009711 0.380011 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E042-INPUT_subsample-1e6.cc.plot.pdf

./E042-INPUT_subsample-1e6.cc.plot.pdf

./E042-INPUT_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E042-INPUT_subsample-1e6.tagAlign.gz 1999513 50 0.027099532063425 35 0.0273341 1500 0.02671831 1.014268 0.6190753 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E042-INPUT_subsample-2.5e6.cc.plot.pdf

./E042-INPUT_subsample-2.5e6.cc.plot.pdf

./E042-INPUT_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E042-INPUT_subsample-2.5e6.tagAlign.gz 4998864 200 0.0647750746431271 35 0.06572596 1500 0.06416733 1.009471 0.3899231 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E042-INPUT_subsample-20e6.cc.plot.pdf

./E042-INPUT_subsample-20e6.cc.plot.pdf

./E042-INPUT_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E042-INPUT_subsample-20e6.tagAlign.gz 39991121 175 0.354353827542852 35 0.3599274 1500 0.3509558 1.009682 0.3787548 -1 E042-INPUT_subsample-20e6.tagAlign.gz 39991121 175 0.354353827542852 35 0.3599274 1500 0.3509558 1.009682 0.3787548 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E042-INPUT_subsample-5e6.cc.plot.pdf

./E042-INPUT_subsample-5e6.cc.plot.pdf

./E042-INPUT_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E042-INPUT_subsample-5e6.tagAlign.gz 9997764 185 0.121510028400076 35 0.1232788 1500 0.1203146 1.009936 0.4032872 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E042-INPUT_subsample-7.5e6.cc.plot.pdf

./E042-INPUT_subsample-7.5e6.cc.plot.pdf

./E042-INPUT_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E042-INPUT_subsample-7.5e6.tagAlign.gz 14996697 195 0.171537889993527 35 0.1741878 1500 0.1698903 1.009698 0.3833814 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E043-INPUT_merged.cc.plot.pdf

./E043-INPUT_merged.cc.plot.pdf

./E043-INPUT_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E043-INPUT_merged.tagAlign.gz 65886173 180 0.473041946879279 35 0.4814964 1500 0.4688711 1.008896 0.330359 -1 E043-INPUT_merged.tagAlign.gz 65886173 180 0.473041946879279 35 0.4814964 1500 0.4688711 1.008896 0.330359 -1 E043-INPUT_merged.tagAlign.gz 65886173 180 0.473041946879279 35 0.4814964 1500 0.4688711 1.008896 0.330359 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E043-INPUT_subsample-0.1e6.cc.plot.pdf

./E043-INPUT_subsample-0.1e6.cc.plot.pdf

./E043-INPUT_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E043-INPUT_subsample-0.1e6.tagAlign.gz 199953 1145 0.00325740212083159 35 0.003111208 1500 0.003046684 1.069163 3.265723 2 E043-INPUT_subsample-0.1e6.tagAlign.gz 199944 715 0.00331332421940674 35 0.003121917 1500 0.003071986 1.078561 4.833391 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E043-INPUT_subsample-0.25e6.cc.plot.pdf

./E043-INPUT_subsample-0.25e6.cc.plot.pdf

./E043-INPUT_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E043-INPUT_subsample-0.25e6.tagAlign.gz 499878 -5 0.00704209177901158 30 0.006994222 1500 0.006908791 1.019294 1.560337 2 E043-INPUT_subsample-0.25e6.tagAlign.gz 499867 -490 0.00702614572359074 35 0.007072481 1500 0.006798893 1.033425 0.8306389 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E043-INPUT_subsample-0.5e6.cc.plot.pdf

./E043-INPUT_subsample-0.5e6.cc.plot.pdf

./E043-INPUT_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E043-INPUT_subsample-0.5e6.tagAlign.gz 999731 175 0.013744730090979 40 0.01388866 1500 0.01359862 1.010744 0.5037601 0 E043-INPUT_subsample-0.5e6.tagAlign.gz 999770 180 0.0137685436418227 35 0.01391068 1500 0.01354164 1.016756 0.6148518 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E043-INPUT_subsample-10e6.cc.plot.pdf

./E043-INPUT_subsample-10e6.cc.plot.pdf

./E043-INPUT_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E043-INPUT_subsample-10e6.tagAlign.gz 19994630 180 0.215916025078497 35 0.2198321 1500 0.2140122 1.008896 0.3271266 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E043-INPUT_subsample-1e6.cc.plot.pdf

./E043-INPUT_subsample-1e6.cc.plot.pdf

./E043-INPUT_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E043-INPUT_subsample-1e6.tagAlign.gz 1999459 80 0.0269939671643515 35 0.02742387 1500 0.02660972 1.01444 0.4719619 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E043-INPUT_subsample-2.5e6.cc.plot.pdf

./E043-INPUT_subsample-2.5e6.cc.plot.pdf

./E043-INPUT_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E043-INPUT_subsample-2.5e6.tagAlign.gz 4998676 190 0.0647126041758171 35 0.06577623 1500 0.06403464 1.010587 0.3892796 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E043-INPUT_subsample-20e6.cc.plot.pdf

./E043-INPUT_subsample-20e6.cc.plot.pdf

./E043-INPUT_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E043-INPUT_subsample-20e6.tagAlign.gz 39989304 190 0.354080587341463 35 0.3603482 1500 0.3509312 1.008974 0.3344348 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E043-INPUT_subsample-5e6.cc.plot.pdf

./E043-INPUT_subsample-5e6.cc.plot.pdf

./E043-INPUT_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E043-INPUT_subsample-5e6.tagAlign.gz 9997330 165 0.121393936034884 35 0.1235362 1500 0.120258 1.009446 0.3465156 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E043-INPUT_subsample-7.5e6.cc.plot.pdf

./E043-INPUT_subsample-7.5e6.cc.plot.pdf

./E043-INPUT_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E043-INPUT_subsample-7.5e6.tagAlign.gz 14996058 185 0.171383898448927 35 0.1745425 1500 0.1698343 1.009124 0.3291244 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E044-INPUT_merged.cc.plot.pdf

./E044-INPUT_merged.cc.plot.pdf

./E044-INPUT_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E044-INPUT_merged.tagAlign.gz 76413620 195 0.509083640956903 35 0.5184927 1500 0.5054239 1.007241 0.2800334 -1 E044-INPUT_merged.tagAlign.gz 76413620 195 0.509083640956903 35 0.5184927 1500 0.5054239 1.007241 0.2800334 -1 E044-INPUT_merged.tagAlign.gz 76413620 195 0.509083640956903 35 0.5184927 1500 0.5054239 1.007241 0.2800334 -1 E044-INPUT_merged.tagAlign.gz 76413620 195 0.509083640956903 35 0.5184927 1500 0.5054239 1.007241 0.2800334 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E044-INPUT_subsample-0.1e6.cc.plot.pdf

./E044-INPUT_subsample-0.1e6.cc.plot.pdf

./E044-INPUT_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E044-INPUT_subsample-0.1e6.tagAlign.gz 199945 735 0.00325662483629087 40 0.003175149 1500 0.003093339 1.052786 1.995926 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E044-INPUT_subsample-0.25e6.cc.plot.pdf

./E044-INPUT_subsample-0.25e6.cc.plot.pdf

./E044-INPUT_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E044-INPUT_subsample-0.25e6.tagAlign.gz 499901 -130 0.00702365966922377 35 0.007099931 1500 0.006864938 1.023121 0.6754315 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E044-INPUT_subsample-0.5e6.cc.plot.pdf

./E044-INPUT_subsample-0.5e6.cc.plot.pdf

./E044-INPUT_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E044-INPUT_subsample-0.5e6.tagAlign.gz 999776 280 0.0137621602415455 35 0.01394345 1500 0.0134858 1.020493 0.6038655 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E044-INPUT_subsample-10e6.cc.plot.pdf

./E044-INPUT_subsample-10e6.cc.plot.pdf

./E044-INPUT_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E044-INPUT_subsample-10e6.tagAlign.gz 19995717 185 0.215744634526542 35 0.2197317 1500 0.2141663 1.00737 0.2835952 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E044-INPUT_subsample-1e6.cc.plot.pdf

./E044-INPUT_subsample-1e6.cc.plot.pdf

./E044-INPUT_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E044-INPUT_subsample-1e6.tagAlign.gz 1999604 180 0.0270057364324661 35 0.02732934 1500 0.02667979 1.012217 0.5017976 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E044-INPUT_subsample-2.5e6.cc.plot.pdf

./E044-INPUT_subsample-2.5e6.cc.plot.pdf

./E044-INPUT_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E044-INPUT_subsample-2.5e6.tagAlign.gz 4998918 205 0.0646169530844111 35 0.06585202 1500 0.06418241 1.00677 0.2602659 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E044-INPUT_subsample-5e6.cc.plot.pdf

./E044-INPUT_subsample-5e6.cc.plot.pdf

./E044-INPUT_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E044-INPUT_subsample-5e6.tagAlign.gz 9997879 195 0.121220724743059 35 0.1234108 1500 0.1202767 1.007849 0.3012226 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E044-INPUT_subsample-7.5e6.cc.plot.pdf

./E044-INPUT_subsample-7.5e6.cc.plot.pdf

./E044-INPUT_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E044-INPUT_subsample-7.5e6.tagAlign.gz 14996857 195 0.171304519802011 35 0.1743646 1500 0.1699048 1.008238 0.3138551 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E045-INPUT_merged.cc.plot.pdf

./E045-INPUT_merged.cc.plot.pdf

./E045-INPUT_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E045-INPUT_merged.tagAlign.gz 54743905 155 0.427453112408877 35 0.4358411 1500 0.4236709 1.008927 0.3107766 -1 E045-INPUT_merged.tagAlign.gz 54743905 155 0.427453112408877 35 0.4358411 1500 0.4236709 1.008927 0.3107766 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E045-INPUT_subsample-0.1e6.cc.plot.pdf

./E045-INPUT_subsample-0.1e6.cc.plot.pdf

./E045-INPUT_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E045-INPUT_subsample-0.1e6.tagAlign.gz 199952 790 0.00323329399333485 35 0.003087253 1500 0.003048863 1.060492 4.804122 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E045-INPUT_subsample-0.25e6.cc.plot.pdf

./E045-INPUT_subsample-0.25e6.cc.plot.pdf

./E045-INPUT_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E045-INPUT_subsample-0.25e6.tagAlign.gz 499862 630 0.00703067627881012 30 0.007048649 1500 0.006810696 1.032299 0.9244674 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E045-INPUT_subsample-0.5e6.cc.plot.pdf

./E045-INPUT_subsample-0.5e6.cc.plot.pdf

./E045-INPUT_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E045-INPUT_subsample-0.5e6.tagAlign.gz 999780 50 0.0138029668879499 35 0.01404926 1500 0.01345385 1.025949 0.5863421 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E045-INPUT_subsample-10e6.cc.plot.pdf

./E045-INPUT_subsample-10e6.cc.plot.pdf

./E045-INPUT_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E045-INPUT_subsample-10e6.tagAlign.gz 19995233 170 0.215750438828369 35 0.2200158 1500 0.2138626 1.008827 0.3068082 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E045-INPUT_subsample-1e6.cc.plot.pdf

./E045-INPUT_subsample-1e6.cc.plot.pdf

./E045-INPUT_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E045-INPUT_subsample-1e6.tagAlign.gz 1999523 220 0.0269664113331211 35 0.02734259 1500 0.02670487 1.009794 0.4101159 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E045-INPUT_subsample-2.5e6.cc.plot.pdf

./E045-INPUT_subsample-2.5e6.cc.plot.pdf

./E045-INPUT_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E045-INPUT_subsample-2.5e6.tagAlign.gz 4998763 55 0.0647362208082373 35 0.06589981 1500 0.06409223 1.010048 0.3562741 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E045-INPUT_subsample-5e6.cc.plot.pdf

./E045-INPUT_subsample-5e6.cc.plot.pdf

./E045-INPUT_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E045-INPUT_subsample-5e6.tagAlign.gz 9997626 170 0.121218364125168 35 0.123551 1500 0.1201238 1.009112 0.3193781 -1 E045-INPUT_subsample-5e6.tagAlign.gz 9997626 170 0.121218364125168 35 0.123551 1500 0.1201238 1.009112 0.3193781 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E045-INPUT_subsample-7.5e6.cc.plot.pdf

./E045-INPUT_subsample-7.5e6.cc.plot.pdf

./E045-INPUT_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E045-INPUT_subsample-7.5e6.tagAlign.gz 14996373 155 0.171253171548848 35 0.1746189 1500 0.1696828 1.009255 0.3181457 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E046-INPUT_merged.cc.plot.pdf

./E046-INPUT_merged.cc.plot.pdf

./E046-INPUT_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E046-INPUT_merged.tagAlign.gz 25189473 185 0.261228751876365 35 0.2675122 1500 0.2566103 1.017998 0.423635 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E046-INPUT_subsample-0.1e6.cc.plot.pdf

./E046-INPUT_subsample-0.1e6.cc.plot.pdf

./E046-INPUT_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E046-INPUT_subsample-0.1e6.tagAlign.gz 199888 -295 0.00326697014443818 40 0.003102765 1500 0.003013705 1.084038 2.843766 2 E046-INPUT_subsample-0.1e6.tagAlign.gz 199884 1495 0.00329397057738444 30 0.003153786 1500 0.003048093 1.080666 2.326339 2 E046-INPUT_subsample-0.1e6.tagAlign.gz 199884 1495 0.00329397057738444 30 0.003153786 1500 0.003048093 1.080666 2.326339 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E046-INPUT_subsample-0.25e6.cc.plot.pdf

./E046-INPUT_subsample-0.25e6.cc.plot.pdf

./E046-INPUT_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E046-INPUT_subsample-0.25e6.tagAlign.gz 499722 315 0.00714453187262669 35 0.007280264 1500 0.006958267 1.026769 0.5784681 0 E046-INPUT_subsample-0.25e6.tagAlign.gz 499722 315 0.00714453187262669 35 0.007280264 1500 0.006958267 1.026769 0.5784681 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E046-INPUT_subsample-0.5e6.cc.plot.pdf

./E046-INPUT_subsample-0.5e6.cc.plot.pdf

./E046-INPUT_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E046-INPUT_subsample-0.5e6.tagAlign.gz 999478 135 0.0140352386673427 35 0.01421643 1500 0.01367624 1.02625 0.6645768 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E046-INPUT_subsample-10e6.cc.plot.pdf

./E046-INPUT_subsample-10e6.cc.plot.pdf

./E046-INPUT_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E046-INPUT_subsample-10e6.tagAlign.gz 19988759 190 0.219335102578573 35 0.2245521 1500 0.2154294 1.01813 0.4281315 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E046-INPUT_subsample-1e6.cc.plot.pdf

./E046-INPUT_subsample-1e6.cc.plot.pdf

./E046-INPUT_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E046-INPUT_subsample-1e6.tagAlign.gz 1998873 170 0.0275261014231956 35 0.02810187 1500 0.02693934 1.021781 0.504731 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E046-INPUT_subsample-2.5e6.cc.plot.pdf

./E046-INPUT_subsample-2.5e6.cc.plot.pdf

./E046-INPUT_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E046-INPUT_subsample-2.5e6.tagAlign.gz 4997208 190 0.0659343193133437 35 0.06733219 1500 0.0647748 1.017901 0.4533985 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E046-INPUT_subsample-5e6.cc.plot.pdf

./E046-INPUT_subsample-5e6.cc.plot.pdf

./E046-INPUT_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E046-INPUT_subsample-5e6.tagAlign.gz 9994254 180 0.123491120127057 35 0.1264192 1500 0.1212418 1.018553 0.4344576 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E046-INPUT_subsample-7.5e6.cc.plot.pdf

./E046-INPUT_subsample-7.5e6.cc.plot.pdf

./E046-INPUT_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E046-INPUT_subsample-7.5e6.tagAlign.gz 14991583 180 0.174189902995882 35 0.1783357 1500 0.1711342 1.017856 0.4243119 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E047-INPUT_merged.cc.plot.pdf

./E047-INPUT_merged.cc.plot.pdf

./E047-INPUT_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E047-INPUT_merged.tagAlign.gz 74582806 235 0.50556419130228 35 0.5101872 1500 0.4999093 1.011312 0.5501992 0 E047-INPUT_merged.tagAlign.gz 74582806 235 0.50556419130228 35 0.5101872 1500 0.4999093 1.011312 0.5501992 0 E047-INPUT_merged.tagAlign.gz 74582806 235 0.50556419130228 35 0.5101872 1500 0.4999093 1.011312 0.5501992 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E047-INPUT_subsample-0.1e6.cc.plot.pdf

./E047-INPUT_subsample-0.1e6.cc.plot.pdf

./E047-INPUT_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E047-INPUT_subsample-0.1e6.tagAlign.gz 199893 340 0.00329272035398013 40 0.003205759 1500 0.003006067 1.095358 1.435473 1 E047-INPUT_subsample-0.1e6.tagAlign.gz 199896 -390 0.00326730156129942 30 0.003174486 1500 0.003201032 1.020703 -2.496379 NA
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E047-INPUT_subsample-0.25e6.cc.plot.pdf

./E047-INPUT_subsample-0.25e6.cc.plot.pdf

./E047-INPUT_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E047-INPUT_subsample-0.25e6.tagAlign.gz 499724 365 0.00711296579890982 35 0.007182955 1500 0.006906487 1.029896 0.7468456 0 E047-INPUT_subsample-0.25e6.tagAlign.gz 499754 460 0.00713914806556958 35 0.00702697 1500 0.006993194 1.020871 4.321285 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E047-INPUT_subsample-0.5e6.cc.plot.pdf

./E047-INPUT_subsample-0.5e6.cc.plot.pdf

./E047-INPUT_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E047-INPUT_subsample-0.5e6.tagAlign.gz 999433 50 0.0139695390663573 40 0.01402686 1500 0.01367158 1.021794 0.8386539 0 E047-INPUT_subsample-0.5e6.tagAlign.gz 999466 230 0.0139453020565663 40 0.01399854 1500 0.01367705 1.019614 0.8344075 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E047-INPUT_subsample-10e6.cc.plot.pdf

./E047-INPUT_subsample-10e6.cc.plot.pdf

./E047-INPUT_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E047-INPUT_subsample-10e6.tagAlign.gz 19989045 240 0.217845718906308 35 0.2212489 1500 0.2150202 1.013141 0.4536294 -1 E047-INPUT_subsample-10e6.tagAlign.gz 19989084 235 0.217814157911347 35 0.221238 1500 0.2150451 1.012876 0.4471269 -1 E047-INPUT_subsample-10e6.tagAlign.gz 19989084 235 0.217814157911347 35 0.221238 1500 0.2150451 1.012876 0.4471269 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E047-INPUT_subsample-1e6.cc.plot.pdf

./E047-INPUT_subsample-1e6.cc.plot.pdf

./E047-INPUT_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E047-INPUT_subsample-1e6.tagAlign.gz 1998934 205 0.0273897256670175 35 0.02774191 1500 0.02692689 1.017189 0.5678822 0 E047-INPUT_subsample-1e6.tagAlign.gz 1998934 205 0.0273897256670175 35 0.02774191 1500 0.02692689 1.017189 0.5678822 0 E047-INPUT_subsample-1e6.tagAlign.gz 1998943 245 0.0273398845031642 35 0.02768429 1500 0.02699262 1.012865 0.5020654 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E047-INPUT_subsample-2.5e6.cc.plot.pdf

./E047-INPUT_subsample-2.5e6.cc.plot.pdf

./E047-INPUT_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E047-INPUT_subsample-2.5e6.tagAlign.gz 4997241 235 0.0654325113328957 35 0.06642893 1500 0.06462499 1.012496 0.4476443 -1 E047-INPUT_subsample-2.5e6.tagAlign.gz 4997283 260 0.0654973696269488 35 0.06649659 1500 0.0646753 1.012711 0.4513661 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E047-INPUT_subsample-20e6.cc.plot.pdf

./E047-INPUT_subsample-20e6.cc.plot.pdf

./E047-INPUT_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E047-INPUT_subsample-20e6.tagAlign.gz 39978131 235 0.356237868139442 35 0.3615551 1500 0.3517552 1.012744 0.4574154 -1 E047-INPUT_subsample-20e6.tagAlign.gz 39978276 235 0.356099438306897 35 0.3615391 1500 0.3516768 1.012576 0.448442 -1 E047-INPUT_subsample-20e6.tagAlign.gz 39978276 235 0.356099438306897 35 0.3615391 1500 0.3516768 1.012576 0.448442 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E047-INPUT_subsample-30e6.cc.plot.pdf

./E047-INPUT_subsample-30e6.cc.plot.pdf

./E047-INPUT_subsample-30e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E047-INPUT_subsample-30e6.tagAlign.gz 59967329 235 0.451892186458959 35 0.4571296 1500 0.4467095 1.011602 0.4973733 -1 E047-INPUT_subsample-30e6.tagAlign.gz 59967094 235 0.451913482361696 35 0.4571005 1500 0.446689 1.011696 0.5018009 0 E047-INPUT_subsample-30e6.tagAlign.gz 59967094 235 0.451913482361696 35 0.4571005 1500 0.446689 1.011696 0.5018009 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E047-INPUT_subsample-5e6.cc.plot.pdf

./E047-INPUT_subsample-5e6.cc.plot.pdf

./E047-INPUT_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E047-INPUT_subsample-5e6.tagAlign.gz 9994530 225 0.122670345370516 35 0.1245396 1500 0.1210809 1.013127 0.4595559 -1 E047-INPUT_subsample-5e6.tagAlign.gz 9994530 225 0.122670345370516 35 0.1245396 1500 0.1210809 1.013127 0.4595559 -1 E047-INPUT_subsample-5e6.tagAlign.gz 9994594 225 0.122671254679268 35 0.1245437 1500 0.1209974 1.013834 0.4719919 -1 E047-INPUT_subsample-5e6.tagAlign.gz 9994594 225 0.122671254679268 35 0.1245437 1500 0.1209974 1.013834 0.4719919 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E047-INPUT_subsample-7.5e6.cc.plot.pdf

./E047-INPUT_subsample-7.5e6.cc.plot.pdf

./E047-INPUT_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E047-INPUT_subsample-7.5e6.tagAlign.gz 14991827 240 0.173029349708869 35 0.1757491 1500 0.1708345 1.012848 0.4466035 -1 E047-INPUT_subsample-7.5e6.tagAlign.gz 14991827 240 0.173029349708869 35 0.1757491 1500 0.1708345 1.012848 0.4466035 -1 E047-INPUT_subsample-7.5e6.tagAlign.gz 14991791 230 0.173039585498856 35 0.1757316 1500 0.1708787 1.012646 0.4452825 -1 E047-INPUT_subsample-7.5e6.tagAlign.gz 14991791 230 0.173039585498856 35 0.1757316 1500 0.1708787 1.012646 0.4452825 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E048-INPUT_merged.cc.plot.pdf

./E048-INPUT_merged.cc.plot.pdf

./E048-INPUT_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E048-INPUT_merged.tagAlign.gz 51336083 225 0.414014495577805 35 0.4226268 1500 0.4090074 1.012242 0.3676466 -1 E048-INPUT_merged.tagAlign.gz 51336083 225 0.414014495577805 35 0.4226268 1500 0.4090074 1.012242 0.3676466 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E048-INPUT_subsample-0.1e6.cc.plot.pdf

./E048-INPUT_subsample-0.1e6.cc.plot.pdf

./E048-INPUT_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E048-INPUT_subsample-0.1e6.tagAlign.gz 199883 1245 0.00329991271260081 35 0.003098886 1500 0.003068479 1.075423 7.611097 2 E048-INPUT_subsample-0.1e6.tagAlign.gz 199878 150 0.00326522321755642 40 0.003078595 1500 0.002928042 1.115156 2.239616 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E048-INPUT_subsample-0.25e6.cc.plot.pdf

./E048-INPUT_subsample-0.25e6.cc.plot.pdf

./E048-INPUT_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E048-INPUT_subsample-0.25e6.tagAlign.gz 499711 -225 0.00710051862214127 30 0.007137457 1500 0.006924372 1.025439 0.8266518 0 E048-INPUT_subsample-0.25e6.tagAlign.gz 499715 205 0.00711727592342916 35 0.007120642 1500 0.006798752 1.04685 0.9895424 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E048-INPUT_subsample-0.5e6.cc.plot.pdf

./E048-INPUT_subsample-0.5e6.cc.plot.pdf

./E048-INPUT_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E048-INPUT_subsample-0.5e6.tagAlign.gz 999416 205 0.013918925720659 40 0.01411205 1500 0.01361104 1.02262 0.6145318 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E048-INPUT_subsample-10e6.cc.plot.pdf

./E048-INPUT_subsample-10e6.cc.plot.pdf

./E048-INPUT_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E048-INPUT_subsample-10e6.tagAlign.gz 19987863 220 0.217660443027183 35 0.2221843 1500 0.2149655 1.012537 0.3733233 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E048-INPUT_subsample-1e6.cc.plot.pdf

./E048-INPUT_subsample-1e6.cc.plot.pdf

./E048-INPUT_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E048-INPUT_subsample-1e6.tagAlign.gz 1998799 150 0.0272886858556271 35 0.02773891 1500 0.02700832 1.010381 0.3837564 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E048-INPUT_subsample-2.5e6.cc.plot.pdf

./E048-INPUT_subsample-2.5e6.cc.plot.pdf

./E048-INPUT_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E048-INPUT_subsample-2.5e6.tagAlign.gz 4996955 205 0.0654033170837856 35 0.06663361 1500 0.06452303 1.013643 0.417082 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E048-INPUT_subsample-20e6.cc.plot.pdf

./E048-INPUT_subsample-20e6.cc.plot.pdf

./E048-INPUT_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E048-INPUT_subsample-20e6.tagAlign.gz 39975968 215 0.35578418084018 35 0.3631796 1500 0.3514796 1.012247 0.3679135 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E048-INPUT_subsample-5e6.cc.plot.pdf

./E048-INPUT_subsample-5e6.cc.plot.pdf

./E048-INPUT_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E048-INPUT_subsample-5e6.tagAlign.gz 9993856 220 0.122527804357045 35 0.1250215 1500 0.1210163 1.01249 0.377381 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E048-INPUT_subsample-7.5e6.cc.plot.pdf

./E048-INPUT_subsample-7.5e6.cc.plot.pdf

./E048-INPUT_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E048-INPUT_subsample-7.5e6.tagAlign.gz 14991044 225 0.172864770550216 35 0.1763163 1500 0.1706697 1.012861 0.388739 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E049-INPUT_merged.cc.plot.pdf

./E049-INPUT_merged.cc.plot.pdf

./E049-INPUT_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E049-INPUT_merged.tagAlign.gz 153743321 175 0.675287287881969 35 0.6797493 1500 0.6705414 1.007078 0.5154119 0 E049-INPUT_merged.tagAlign.gz 153743321 175 0.675287287881969 35 0.6797493 1500 0.6705414 1.007078 0.5154119 0 E049-INPUT_merged.tagAlign.gz 153743321 175 0.675287287881969 35 0.6797493 1500 0.6705414 1.007078 0.5154119 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E049-INPUT_subsample-0.1e6.cc.plot.pdf

./E049-INPUT_subsample-0.1e6.cc.plot.pdf

./E049-INPUT_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E049-INPUT_subsample-0.1e6.tagAlign.gz 199895 -315 0.00326447977674345 40 0.003069683 1500 0.003112901 1.048694 -3.507224 NA E049-INPUT_subsample-0.1e6.tagAlign.gz 199881 235 0.00323829209777835 35 0.003021906 1500 0.003054983 1.060003 -5.541877 NA
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E049-INPUT_subsample-0.25e6.cc.plot.pdf

./E049-INPUT_subsample-0.25e6.cc.plot.pdf

./E049-INPUT_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E049-INPUT_subsample-0.25e6.tagAlign.gz 499711 515 0.00703500570781613 40 0.006986563 1500 0.006860285 1.025468 1.383618 1 E049-INPUT_subsample-0.25e6.tagAlign.gz 499695 250 0.00700917142077823 30 0.006970752 1500 0.006748157 1.038679 1.172597 1 E049-INPUT_subsample-0.25e6.tagAlign.gz 499695 250 0.00700917142077823 30 0.006970752 1500 0.006748157 1.038679 1.172597 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E049-INPUT_subsample-0.5e6.cc.plot.pdf

./E049-INPUT_subsample-0.5e6.cc.plot.pdf

./E049-INPUT_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E049-INPUT_subsample-0.5e6.tagAlign.gz 999435 65 0.0137141332150634 35 0.01389757 1500 0.01346347 1.018618 0.5774388 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E049-INPUT_subsample-10e6.cc.plot.pdf

./E049-INPUT_subsample-10e6.cc.plot.pdf

./E049-INPUT_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E049-INPUT_subsample-10e6.tagAlign.gz 19989040 145 0.215823289218257 35 0.2188734 1500 0.2140366 1.008347 0.3693929 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E049-INPUT_subsample-1e6.cc.plot.pdf

./E049-INPUT_subsample-1e6.cc.plot.pdf

./E049-INPUT_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E049-INPUT_subsample-1e6.tagAlign.gz 1998924 140 0.0269552919032848 35 0.02731888 1500 0.02672659 1.008557 0.3861333 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E049-INPUT_subsample-2.5e6.cc.plot.pdf

./E049-INPUT_subsample-2.5e6.cc.plot.pdf

./E049-INPUT_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E049-INPUT_subsample-2.5e6.tagAlign.gz 4997207 145 0.0646589330461745 35 0.0655359 1500 0.06401005 1.010137 0.4252594 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E049-INPUT_subsample-20e6.cc.plot.pdf

./E049-INPUT_subsample-20e6.cc.plot.pdf

./E049-INPUT_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E049-INPUT_subsample-20e6.tagAlign.gz 39977826 165 0.353993190015496 35 0.3588764 1500 0.3510737 1.008316 0.3741627 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E049-INPUT_subsample-30e6.cc.plot.pdf

./E049-INPUT_subsample-30e6.cc.plot.pdf

./E049-INPUT_subsample-30e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E049-INPUT_subsample-30e6.tagAlign.gz 59966916 170 0.450165391614669 35 0.4561003 1500 0.4465674 1.008057 0.3774289 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E049-INPUT_subsample-5e6.cc.plot.pdf

./E049-INPUT_subsample-5e6.cc.plot.pdf

./E049-INPUT_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E049-INPUT_subsample-5e6.tagAlign.gz 9994446 150 0.121254317184077 35 0.1228845 1500 0.1202075 1.008708 0.3910401 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E049-INPUT_subsample-7.5e6.cc.plot.pdf

./E049-INPUT_subsample-7.5e6.cc.plot.pdf

./E049-INPUT_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E049-INPUT_subsample-7.5e6.tagAlign.gz 14991782 165 0.17126603248186 35 0.1735391 1500 0.1698525 1.008322 0.3834284 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E050-INPUT_merged.cc.plot.pdf

./E050-INPUT_merged.cc.plot.pdf

./E050-INPUT_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E050-INPUT_merged.tagAlign.gz 339418955 155 0.816543318607267 35 0.8199484 1500 0.8107858 1.007101 0.6283696 0 E050-INPUT_merged.tagAlign.gz 339418955 155 0.816543318607267 35 0.8199484 1500 0.8107858 1.007101 0.6283696 0 E050-INPUT_merged.tagAlign.gz 339418955 155 0.816543318607267 35 0.8199484 1500 0.8107858 1.007101 0.6283696 0 E050-INPUT_merged.tagAlign.gz 339418955 155 0.816543318607267 35 0.8199484 1500 0.8107858 1.007101 0.6283696 0 E050-INPUT_merged.tagAlign.gz 339418955 155 0.816543318607267 35 0.8199484 1500 0.8107858 1.007101 0.6283696 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E050-INPUT_subsample-0.1e6.cc.plot.pdf

./E050-INPUT_subsample-0.1e6.cc.plot.pdf

./E050-INPUT_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E050-INPUT_subsample-0.1e6.tagAlign.gz 199924 415 0.00323484271353721 35 0.003065709 1500 0.003042266 1.0633 8.214846 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E050-INPUT_subsample-0.25e6.cc.plot.pdf

./E050-INPUT_subsample-0.25e6.cc.plot.pdf

./E050-INPUT_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E050-INPUT_subsample-0.25e6.tagAlign.gz 499826 175 0.00702596360328037 35 0.006977537 1500 0.0068405 1.027113 1.353381 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E050-INPUT_subsample-0.5e6.cc.plot.pdf

./E050-INPUT_subsample-0.5e6.cc.plot.pdf

./E050-INPUT_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E050-INPUT_subsample-0.5e6.tagAlign.gz 999631 160 0.0136869167659923 35 0.01382311 1500 0.01346005 1.016855 0.6248774 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E050-INPUT_subsample-10e6.cc.plot.pdf

./E050-INPUT_subsample-10e6.cc.plot.pdf

./E050-INPUT_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E050-INPUT_subsample-10e6.tagAlign.gz 19992440 160 0.21535373317326 35 0.2176722 1500 0.213661 1.007922 0.4219964 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E050-INPUT_subsample-1e6.cc.plot.pdf

./E050-INPUT_subsample-1e6.cc.plot.pdf

./E050-INPUT_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E050-INPUT_subsample-1e6.tagAlign.gz 1999256 205 0.0269201112540451 35 0.02717119 1500 0.02654055 1.014301 0.6018649 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E050-INPUT_subsample-2.5e6.cc.plot.pdf

./E050-INPUT_subsample-2.5e6.cc.plot.pdf

./E050-INPUT_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E050-INPUT_subsample-2.5e6.tagAlign.gz 4998158 185 0.0645280403548794 35 0.06515594 1500 0.063921 1.009497 0.4915546 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E050-INPUT_subsample-20e6.cc.plot.pdf

./E050-INPUT_subsample-20e6.cc.plot.pdf

./E050-INPUT_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E050-INPUT_subsample-20e6.tagAlign.gz 39984968 175 0.353302457700821 35 0.3570952 1500 0.3504993 1.007998 0.4249889 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E050-INPUT_subsample-30e6.cc.plot.pdf

./E050-INPUT_subsample-30e6.cc.plot.pdf

./E050-INPUT_subsample-30e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E050-INPUT_subsample-30e6.tagAlign.gz 59977445 155 0.449252933563021 35 0.4539359 1500 0.4457607 1.007834 0.4271727 -1 E050-INPUT_subsample-30e6.tagAlign.gz 59977445 155 0.449252933563021 35 0.4539359 1500 0.4457607 1.007834 0.4271727 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E050-INPUT_subsample-5e6.cc.plot.pdf

./E050-INPUT_subsample-5e6.cc.plot.pdf

./E050-INPUT_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E050-INPUT_subsample-5e6.tagAlign.gz 9996180 125 0.121015357140471 35 0.122231 1500 0.1199608 1.008791 0.4645168 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E050-INPUT_subsample-7.5e6.cc.plot.pdf

./E050-INPUT_subsample-7.5e6.cc.plot.pdf

./E050-INPUT_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E050-INPUT_subsample-7.5e6.tagAlign.gz 14994359 160 0.170938204985302 35 0.1726582 1500 0.1694862 1.008567 0.4577538 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E055-INPUT_merged.cc.plot.pdf

./E055-INPUT_merged.cc.plot.pdf

./E055-INPUT_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E055-INPUT_merged.tagAlign.gz 45238998 185 0.386681767662241 35 0.3859113 1500 0.3825765 1.010731 1.231028 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E055-INPUT_subsample-0.1e6.cc.plot.pdf

./E055-INPUT_subsample-0.1e6.cc.plot.pdf

./E055-INPUT_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E055-INPUT_subsample-0.1e6.tagAlign.gz 199916 855 0.00326739901304405 40 0.003163577 1500 0.003211726 1.017334 -1.156276 NA E055-INPUT_subsample-0.1e6.tagAlign.gz 199932 870 0.00327030365566285 35 0.00303592 1500 0.003059991 1.06873 -8.737106 NA
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E055-INPUT_subsample-0.25e6.cc.plot.pdf

./E055-INPUT_subsample-0.25e6.cc.plot.pdf

./E055-INPUT_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E055-INPUT_subsample-0.25e6.tagAlign.gz 499792 605 0.00710946078896533 40 0.007094862 1500 0.006858098 1.036652 1.061661 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E055-INPUT_subsample-0.5e6.cc.plot.pdf

./E055-INPUT_subsample-0.5e6.cc.plot.pdf

./E055-INPUT_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E055-INPUT_subsample-0.5e6.tagAlign.gz 999581 195 0.013863528956548 40 0.01378057 1500 0.01363025 1.017115 1.551877 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E055-INPUT_subsample-10e6.cc.plot.pdf

./E055-INPUT_subsample-10e6.cc.plot.pdf

./E055-INPUT_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E055-INPUT_subsample-10e6.tagAlign.gz 19992731 190 0.218080035770045 35 0.217625 1500 0.2157701 1.010706 1.245307 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E055-INPUT_subsample-1e6.cc.plot.pdf

./E055-INPUT_subsample-1e6.cc.plot.pdf

./E055-INPUT_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E055-INPUT_subsample-1e6.tagAlign.gz 1999282 170 0.0272406985056527 40 0.02712771 1500 0.02691347 1.012159 1.527366 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E055-INPUT_subsample-2.5e6.cc.plot.pdf

./E055-INPUT_subsample-2.5e6.cc.plot.pdf

./E055-INPUT_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E055-INPUT_subsample-2.5e6.tagAlign.gz 4998155 180 0.0653250703004059 40 0.06507295 1500 0.06456696 1.011741 1.498285 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E055-INPUT_subsample-20e6.cc.plot.pdf

./E055-INPUT_subsample-20e6.cc.plot.pdf

./E055-INPUT_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E055-INPUT_subsample-20e6.tagAlign.gz 39985421 185 0.357867211244538 35 0.3571508 1500 0.3540913 1.010664 1.234182 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E055-INPUT_subsample-5e6.cc.plot.pdf

./E055-INPUT_subsample-5e6.cc.plot.pdf

./E055-INPUT_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E055-INPUT_subsample-5e6.tagAlign.gz 9996303 185 0.122500866459241 40 0.1221715 1500 0.1212004 1.01073 1.339118 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E055-INPUT_subsample-7.5e6.cc.plot.pdf

./E055-INPUT_subsample-7.5e6.cc.plot.pdf

./E055-INPUT_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E055-INPUT_subsample-7.5e6.tagAlign.gz 14994565 190 0.1730661988325 35 0.1726915 1500 0.1711953 1.010928 1.25044 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E056-INPUT_merged.cc.plot.pdf

./E056-INPUT_merged.cc.plot.pdf

./E056-INPUT_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E056-INPUT_merged.tagAlign.gz 44821565 160 0.382759269456075 35 0.3818345 1500 0.3789088 1.010162 1.31608 1 E056-INPUT_merged.tagAlign.gz 44821565 160 0.382759269456075 35 0.3818345 1500 0.3789088 1.010162 1.31608 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E056-INPUT_subsample-0.1e6.cc.plot.pdf

./E056-INPUT_subsample-0.1e6.cc.plot.pdf

./E056-INPUT_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E056-INPUT_subsample-0.1e6.tagAlign.gz 199931 325 0.00329026689796982 35 0.003075912 1500 0.003074049 1.070336 116.0757 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E056-INPUT_subsample-0.25e6.cc.plot.pdf

./E056-INPUT_subsample-0.25e6.cc.plot.pdf

./E056-INPUT_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E056-INPUT_subsample-0.25e6.tagAlign.gz 499860 -55 0.00707964671894841 40 0.006964472 1500 0.006889944 1.027533 2.54539 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E056-INPUT_subsample-0.5e6.cc.plot.pdf

./E056-INPUT_subsample-0.5e6.cc.plot.pdf

./E056-INPUT_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E056-INPUT_subsample-0.5e6.tagAlign.gz 999680 150 0.0138645142363391 30 0.01372596 1500 0.01355015 1.0232 1.788085 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E056-INPUT_subsample-10e6.cc.plot.pdf

./E056-INPUT_subsample-10e6.cc.plot.pdf

./E056-INPUT_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E056-INPUT_subsample-10e6.tagAlign.gz 19993946 165 0.217398988361338 35 0.2168004 1500 0.2151514 1.010446 1.363023 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E056-INPUT_subsample-1e6.cc.plot.pdf

./E056-INPUT_subsample-1e6.cc.plot.pdf

./E056-INPUT_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E056-INPUT_subsample-1e6.tagAlign.gz 1999378 155 0.027131444829261 35 0.02710265 1500 0.02692907 1.007515 1.165854 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E056-INPUT_subsample-2.5e6.cc.plot.pdf

./E056-INPUT_subsample-2.5e6.cc.plot.pdf

./E056-INPUT_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E056-INPUT_subsample-2.5e6.tagAlign.gz 4998469 185 0.0651563386562633 40 0.06498513 1500 0.06445766 1.010839 1.324589 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E056-INPUT_subsample-20e6.cc.plot.pdf

./E056-INPUT_subsample-20e6.cc.plot.pdf

./E056-INPUT_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E056-INPUT_subsample-20e6.tagAlign.gz 39987839 165 0.356337433078851 35 0.3554844 1500 0.3527818 1.010079 1.315609 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E056-INPUT_subsample-5e6.cc.plot.pdf

./E056-INPUT_subsample-5e6.cc.plot.pdf

./E056-INPUT_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E056-INPUT_subsample-5e6.tagAlign.gz 9997003 155 0.12215754920002 35 0.1218223 1500 0.1209451 1.010025 1.382152 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E056-INPUT_subsample-7.5e6.cc.plot.pdf

./E056-INPUT_subsample-7.5e6.cc.plot.pdf

./E056-INPUT_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E056-INPUT_subsample-7.5e6.tagAlign.gz 14995502 150 0.172524609771119 35 0.1720901 1500 0.1708267 1.009939 1.343969 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E058-INPUT_merged.cc.plot.pdf

./E058-INPUT_merged.cc.plot.pdf

./E058-INPUT_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E058-INPUT_merged.tagAlign.gz 36513009 155 0.361922937136413 35 0.3365624 1500 0.3324051 1.088801 7.100312 2 E058-INPUT_merged.tagAlign.gz 36513009 155 0.361922937136413 35 0.3365624 1500 0.3324051 1.088801 7.100312 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E058-INPUT_subsample-0.1e6.cc.plot.pdf

./E058-INPUT_subsample-0.1e6.cc.plot.pdf

./E058-INPUT_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E058-INPUT_subsample-0.1e6.tagAlign.gz 199895 1390 0.00327072149012141 40 0.003120795 1500 0.003111409 1.051203 16.97197 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E058-INPUT_subsample-0.25e6.cc.plot.pdf

./E058-INPUT_subsample-0.25e6.cc.plot.pdf

./E058-INPUT_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E058-INPUT_subsample-0.25e6.tagAlign.gz 499760 150 0.00754940071901536 35 0.006990782 1500 0.00685297 1.101625 5.053498 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E058-INPUT_subsample-0.5e6.cc.plot.pdf

./E058-INPUT_subsample-0.5e6.cc.plot.pdf

./E058-INPUT_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E058-INPUT_subsample-0.5e6.tagAlign.gz 999567 165 0.0148737620534322 40 0.01379834 1500 0.01364829 1.089789 8.167446 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E058-INPUT_subsample-10e6.cc.plot.pdf

./E058-INPUT_subsample-10e6.cc.plot.pdf

./E058-INPUT_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E058-INPUT_subsample-10e6.tagAlign.gz 19990818 155 0.234250270523125 35 0.2178692 1500 0.2152118 1.088464 7.164175 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E058-INPUT_subsample-1e6.cc.plot.pdf

./E058-INPUT_subsample-1e6.cc.plot.pdf

./E058-INPUT_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E058-INPUT_subsample-1e6.tagAlign.gz 1999056 155 0.0292550521455637 35 0.02721199 1500 0.02680717 1.091314 6.046971 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E058-INPUT_subsample-2.5e6.cc.plot.pdf

./E058-INPUT_subsample-2.5e6.cc.plot.pdf

./E058-INPUT_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E058-INPUT_subsample-2.5e6.tagAlign.gz 4997668 155 0.0702625633165069 40 0.06529761 1500 0.064409 1.090881 6.587328 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E058-INPUT_subsample-5e6.cc.plot.pdf

./E058-INPUT_subsample-5e6.cc.plot.pdf

./E058-INPUT_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E058-INPUT_subsample-5e6.tagAlign.gz 9995404 155 0.131755813645076 35 0.1224668 1500 0.1209739 1.089126 7.222168 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E058-INPUT_subsample-7.5e6.cc.plot.pdf

./E058-INPUT_subsample-7.5e6.cc.plot.pdf

./E058-INPUT_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E058-INPUT_subsample-7.5e6.tagAlign.gz 14993118 155 0.185990629989729 35 0.172964 1500 0.1708287 1.088755 7.100597 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E059-INPUT_merged.cc.plot.pdf

./E059-INPUT_merged.cc.plot.pdf

./E059-INPUT_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E059-INPUT_merged.tagAlign.gz 15678304 110 0.178655207878335 35 0.1786926 1500 0.176705 1.011036 0.9812064 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E059-INPUT_subsample-0.1e6.cc.plot.pdf

./E059-INPUT_subsample-0.1e6.cc.plot.pdf

./E059-INPUT_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E059-INPUT_subsample-0.1e6.tagAlign.gz 199970 1415 0.00329473853988341 35 0.003105708 1500 0.003028552 1.087892 3.449958 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E059-INPUT_subsample-0.25e6.cc.plot.pdf

./E059-INPUT_subsample-0.25e6.cc.plot.pdf

./E059-INPUT_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E059-INPUT_subsample-0.25e6.tagAlign.gz 499923 655 0.00712259892583708 35 0.006991358 1500 0.006872335 1.036416 2.102644 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E059-INPUT_subsample-0.5e6.cc.plot.pdf

./E059-INPUT_subsample-0.5e6.cc.plot.pdf

./E059-INPUT_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E059-INPUT_subsample-0.5e6.tagAlign.gz 999859 120 0.0138574320729862 35 0.01390913 1500 0.01360359 1.01866 0.8307861 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E059-INPUT_subsample-1e6.cc.plot.pdf

./E059-INPUT_subsample-1e6.cc.plot.pdf

./E059-INPUT_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E059-INPUT_subsample-1e6.tagAlign.gz 1999714 110 0.0272468359149337 35 0.02716457 1500 0.02692907 1.0118 1.34935 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E059-INPUT_subsample-2.5e6.cc.plot.pdf

./E059-INPUT_subsample-2.5e6.cc.plot.pdf

./E059-INPUT_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E059-INPUT_subsample-2.5e6.tagAlign.gz 4999258 115 0.0652299749640824 40 0.06516561 1500 0.06456149 1.010354 1.106538 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E059-INPUT_subsample-5e6.cc.plot.pdf

./E059-INPUT_subsample-5e6.cc.plot.pdf

./E059-INPUT_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E059-INPUT_subsample-5e6.tagAlign.gz 9998500 110 0.122179664680816 35 0.1221402 1500 0.1207908 1.011498 1.029279 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E059-INPUT_subsample-7.5e6.cc.plot.pdf

./E059-INPUT_subsample-7.5e6.cc.plot.pdf

./E059-INPUT_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E059-INPUT_subsample-7.5e6.tagAlign.gz 14997722 110 0.17229667908147 35 0.1723156 1500 0.1703963 1.011153 0.9901223 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E061-INPUT_merged.cc.plot.pdf

./E061-INPUT_merged.cc.plot.pdf

./E061-INPUT_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E061-INPUT_merged.tagAlign.gz 52276675 140 0.442854947398453 35 0.4224107 1500 0.4163023 1.063782 4.346934 2 E061-INPUT_merged.tagAlign.gz 52276675 140 0.442854947398453 35 0.4224107 1500 0.4163023 1.063782 4.346934 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E061-INPUT_subsample-0.1e6.cc.plot.pdf

./E061-INPUT_subsample-0.1e6.cc.plot.pdf

./E061-INPUT_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E061-INPUT_subsample-0.1e6.tagAlign.gz 199994 -485 0.00325569728603436 30 0.003160856 1500 0.003079936 1.057066 2.172051 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E061-INPUT_subsample-0.25e6.cc.plot.pdf

./E061-INPUT_subsample-0.25e6.cc.plot.pdf

./E061-INPUT_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E061-INPUT_subsample-0.25e6.tagAlign.gz 499978 170 0.00740587016845063 30 0.007032402 1500 0.006893867 1.074269 3.695841 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E061-INPUT_subsample-0.5e6.cc.plot.pdf

./E061-INPUT_subsample-0.5e6.cc.plot.pdf

./E061-INPUT_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E061-INPUT_subsample-0.5e6.tagAlign.gz 999964 145 0.0146094147547459 35 0.01391317 1500 0.01365097 1.070211 3.655422 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E061-INPUT_subsample-10e6.cc.plot.pdf

./E061-INPUT_subsample-10e6.cc.plot.pdf

./E061-INPUT_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E061-INPUT_subsample-10e6.tagAlign.gz 19999251 135 0.229581955426692 35 0.2189973 1500 0.2158376 1.063679 4.349877 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E061-INPUT_subsample-1e6.cc.plot.pdf

./E061-INPUT_subsample-1e6.cc.plot.pdf

./E061-INPUT_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E061-INPUT_subsample-1e6.tagAlign.gz 1999922 125 0.0286762534157693 35 0.02742735 1500 0.02688459 1.066643 3.301002 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E061-INPUT_subsample-2.5e6.cc.plot.pdf

./E061-INPUT_subsample-2.5e6.cc.plot.pdf

./E061-INPUT_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E061-INPUT_subsample-2.5e6.tagAlign.gz 4999814 135 0.0688170968217066 35 0.06557085 1500 0.06465023 1.064453 4.52613 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E061-INPUT_subsample-20e6.cc.plot.pdf

./E061-INPUT_subsample-20e6.cc.plot.pdf

./E061-INPUT_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E061-INPUT_subsample-20e6.tagAlign.gz 39998520 135 0.376337627100895 35 0.3589862 1500 0.3537684 1.063797 4.325387 2 E061-INPUT_subsample-20e6.tagAlign.gz 39998520 135 0.376337627100895 35 0.3589862 1500 0.3537684 1.063797 4.325387 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E061-INPUT_subsample-5e6.cc.plot.pdf

./E061-INPUT_subsample-5e6.cc.plot.pdf

./E061-INPUT_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E061-INPUT_subsample-5e6.tagAlign.gz 9999628 135 0.129038494566648 35 0.1230627 1500 0.1212956 1.063835 4.38179 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E061-INPUT_subsample-7.5e6.cc.plot.pdf

./E061-INPUT_subsample-7.5e6.cc.plot.pdf

./E061-INPUT_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E061-INPUT_subsample-7.5e6.tagAlign.gz 14999459 135 0.182256441334043 35 0.1738051 1500 0.1713044 1.063933 4.379634 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E062-INPUT_merged.cc.plot.pdf

./E062-INPUT_merged.cc.plot.pdf

./E062-INPUT_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E062-INPUT_merged.tagAlign.gz 115461767 180 0.608110856769323 35 0.6094265 1500 0.6018752 1.01036 0.8257776 0 E062-INPUT_merged.tagAlign.gz 115461767 180 0.608110856769323 35 0.6094265 1500 0.6018752 1.01036 0.8257776 0 E062-INPUT_merged.tagAlign.gz 115461767 180 0.608110856769323 35 0.6094265 1500 0.6018752 1.01036 0.8257776 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E062-INPUT_subsample-0.1e6.cc.plot.pdf

./E062-INPUT_subsample-0.1e6.cc.plot.pdf

./E062-INPUT_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E062-INPUT_subsample-0.1e6.tagAlign.gz 199936 710 0.00325603531091124 40 0.003101046 1500 0.003073824 1.059278 6.693574 2 E062-INPUT_subsample-0.1e6.tagAlign.gz 199947 -310 0.00325602511745315 40 0.003164402 1500 0.002979528 1.092799 1.495595 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E062-INPUT_subsample-0.25e6.cc.plot.pdf

./E062-INPUT_subsample-0.25e6.cc.plot.pdf

./E062-INPUT_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E062-INPUT_subsample-0.25e6.tagAlign.gz 499853 195 0.00708406047361521 30 0.00705777 1500 0.006894426 1.027505 1.160954 1 E062-INPUT_subsample-0.25e6.tagAlign.gz 499841 165 0.00711533945341732 40 0.007050843 1500 0.006861868 1.036939 1.341294 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E062-INPUT_subsample-0.5e6.cc.plot.pdf

./E062-INPUT_subsample-0.5e6.cc.plot.pdf

./E062-INPUT_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E062-INPUT_subsample-0.5e6.tagAlign.gz 999714 90 0.0138905670031296 30 0.0138393 1500 0.01351999 1.027409 1.16055 1 E062-INPUT_subsample-0.5e6.tagAlign.gz 999729 95 0.0138938966648594 35 0.01384461 1500 0.01365125 1.017775 1.254861 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E062-INPUT_subsample-10e6.cc.plot.pdf

./E062-INPUT_subsample-10e6.cc.plot.pdf

./E062-INPUT_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E062-INPUT_subsample-10e6.tagAlign.gz 19994096 95 0.216944842637454 35 0.2187301 1500 0.2138349 1.014543 0.6352956 0 E062-INPUT_subsample-10e6.tagAlign.gz 19994096 95 0.216944842637454 35 0.2187301 1500 0.2138349 1.014543 0.6352956 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E062-INPUT_subsample-1e6.cc.plot.pdf

./E062-INPUT_subsample-1e6.cc.plot.pdf

./E062-INPUT_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E062-INPUT_subsample-1e6.tagAlign.gz 1999423 190 0.0272637592484323 40 0.02737203 1500 0.0267699 1.018448 0.8201816 0 E062-INPUT_subsample-1e6.tagAlign.gz 1999404 55 0.0272716282742426 35 0.02740628 1500 0.02678893 1.018019 0.7818847 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E062-INPUT_subsample-2.5e6.cc.plot.pdf

./E062-INPUT_subsample-2.5e6.cc.plot.pdf

./E062-INPUT_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E062-INPUT_subsample-2.5e6.tagAlign.gz 4998497 50 0.0654233948953144 35 0.06571758 1500 0.06422746 1.01862 0.8025782 0 E062-INPUT_subsample-2.5e6.tagAlign.gz 4998455 75 0.0652866245464452 35 0.06573968 1500 0.06428202 1.015628 0.689189 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E062-INPUT_subsample-20e6.cc.plot.pdf

./E062-INPUT_subsample-20e6.cc.plot.pdf

./E062-INPUT_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E062-INPUT_subsample-20e6.tagAlign.gz 39988112 95 0.354312963922379 35 0.356884 1500 0.3497073 1.01317 0.6417574 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E062-INPUT_subsample-5e6.cc.plot.pdf

./E062-INPUT_subsample-5e6.cc.plot.pdf

./E062-INPUT_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E062-INPUT_subsample-5e6.tagAlign.gz 9997005 70 0.122265736251434 35 0.1231702 1500 0.1203697 1.015752 0.6770334 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E062-INPUT_subsample-7.5e6.cc.plot.pdf

./E062-INPUT_subsample-7.5e6.cc.plot.pdf

./E062-INPUT_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E062-INPUT_subsample-7.5e6.tagAlign.gz 14995530 75 0.172486854179736 35 0.1736592 1500 0.1698681 1.015416 0.6907661 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM10847-INPUT_merged.cc.plot.pdf

./GM10847-INPUT_merged.cc.plot.pdf

./GM10847-INPUT_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM10847-INPUT_merged.tagAlign.gz 71961986 220 0.519536544743144 105 0.4946942 1500 0.493225 1.053346 17.9091 2 GM10847-INPUT_merged.tagAlign.gz 71961986 220 0.519536544743144 105 0.4946942 1500 0.493225 1.053346 17.9091 2 GM10847-INPUT_merged.tagAlign.gz 71961986 220 0.519536544743144 105 0.4946942 1500 0.493225 1.053346 17.9091 2 GM10847-INPUT_merged.tagAlign.gz 71961986 220 0.519536544743144 105 0.4946942 1500 0.493225 1.053346 17.9091 2 GM10847-INPUT_merged.tagAlign.gz 71961986 220 0.519536544743144 105 0.4946942 1500 0.493225 1.053346 17.9091 2 GM10847-INPUT_merged.tagAlign.gz 71961986 220 0.519536544743144 105 0.4946942 1500 0.493225 1.053346 17.9091 2 GM10847-INPUT_merged.tagAlign.gz 71961986 220 0.519536544743144 105 0.4946942 1500 0.493225 1.053346 17.9091 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM10847-INPUT_subsample-0.1e6.cc.plot.pdf

./GM10847-INPUT_subsample-0.1e6.cc.plot.pdf

./GM10847-INPUT_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM10847-INPUT_subsample-0.1e6.tagAlign.gz 200000 225 0.0507642978343431 100 0.00360453 1500 0.003076969 16.49815 90.39209 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM10847-INPUT_subsample-0.25e6.cc.plot.pdf

./GM10847-INPUT_subsample-0.25e6.cc.plot.pdf

./GM10847-INPUT_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM10847-INPUT_subsample-0.25e6.tagAlign.gz 500000 230 0.0549709087121972 100 0.007786062 1500 0.007162852 7.674444 76.71261 2 GM10847-INPUT_subsample-0.25e6.tagAlign.gz 500000 225 0.0552409523699103 100 0.008123888 1500 0.007321766 7.544758 59.74052 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM10847-INPUT_subsample-0.5e6.cc.plot.pdf

./GM10847-INPUT_subsample-0.5e6.cc.plot.pdf

./GM10847-INPUT_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM10847-INPUT_subsample-0.5e6.tagAlign.gz 1000000 225 0.0625185644574848 105 0.01550834 1500 0.01402741 4.456886 32.74369 2 GM10847-INPUT_subsample-0.5e6.tagAlign.gz 1000000 225 0.0625185644574848 105 0.01550834 1500 0.01402741 4.456886 32.74369 2 GM10847-INPUT_subsample-0.5e6.tagAlign.gz 1000000 225 0.0625185644574848 105 0.01550834 1500 0.01402741 4.456886 32.74369 2 GM10847-INPUT_subsample-0.5e6.tagAlign.gz 1000000 225 0.0625185644574848 105 0.01550834 1500 0.01402741 4.456886 32.74369 2 GM10847-INPUT_subsample-0.5e6.tagAlign.gz 1000000 225 0.0625431537396482 95 0.01544432 1500 0.01420308 4.403492 38.94519 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM10847-INPUT_subsample-10e6.cc.plot.pdf

./GM10847-INPUT_subsample-10e6.cc.plot.pdf

./GM10847-INPUT_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM10847-INPUT_subsample-10e6.tagAlign.gz 20000000 225 0.254717578542689 105 0.2171177 1500 0.2153673 1.182713 22.48073 2 GM10847-INPUT_subsample-10e6.tagAlign.gz 20000000 220 0.254659890754837 105 0.217273 1500 0.2154701 1.18188 21.73748 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM10847-INPUT_subsample-1e6.cc.plot.pdf

./GM10847-INPUT_subsample-1e6.cc.plot.pdf

./GM10847-INPUT_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM10847-INPUT_subsample-1e6.tagAlign.gz 2000000 220 0.0768736768725297 95 0.03041953 1500 0.02778816 2.766418 18.65398 2 GM10847-INPUT_subsample-1e6.tagAlign.gz 2000000 220 0.0768736768725297 95 0.03041953 1500 0.02778816 2.766418 18.65398 2 GM10847-INPUT_subsample-1e6.tagAlign.gz 2000000 220 0.0768736768725297 95 0.03041953 1500 0.02778816 2.766418 18.65398 2 GM10847-INPUT_subsample-1e6.tagAlign.gz 2000000 220 0.0768736768725297 95 0.03041953 1500 0.02778816 2.766418 18.65398 2 GM10847-INPUT_subsample-1e6.tagAlign.gz 2000000 220 0.0768736768725297 95 0.03041953 1500 0.02778816 2.766418 18.65398 2 GM10847-INPUT_subsample-1e6.tagAlign.gz 2000000 220 0.0767696988830185 100 0.03022056 1500 0.02784196 2.757338 20.56993 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM10847-INPUT_subsample-2.5e6.cc.plot.pdf

./GM10847-INPUT_subsample-2.5e6.cc.plot.pdf

./GM10847-INPUT_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM10847-INPUT_subsample-2.5e6.tagAlign.gz 5000000 225 0.11435614797974 105 0.06970822 1500 0.06633549 1.723906 14.2379 2 GM10847-INPUT_subsample-2.5e6.tagAlign.gz 5000000 225 0.11435614797974 105 0.06970822 1500 0.06633549 1.723906 14.2379 2 GM10847-INPUT_subsample-2.5e6.tagAlign.gz 5000000 225 0.11435614797974 105 0.06970822 1500 0.06633549 1.723906 14.2379 2 GM10847-INPUT_subsample-2.5e6.tagAlign.gz 5000000 225 0.11435614797974 105 0.06970822 1500 0.06633549 1.723906 14.2379 2 GM10847-INPUT_subsample-2.5e6.tagAlign.gz 5000000 225 0.11435614797974 105 0.06970822 1500 0.06633549 1.723906 14.2379 2 GM10847-INPUT_subsample-2.5e6.tagAlign.gz 5000000 220 0.113958019272844 105 0.06980055 1500 0.06633406 1.717941 13.73837 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM10847-INPUT_subsample-20e6.cc.plot.pdf

./GM10847-INPUT_subsample-20e6.cc.plot.pdf

./GM10847-INPUT_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM10847-INPUT_subsample-20e6.tagAlign.gz 40000000 220 0.384826862170548 105 0.3535161 1500 0.3522404 1.092512 25.54286 2 GM10847-INPUT_subsample-20e6.tagAlign.gz 40000000 225 0.384846610980293 100 0.3535288 1500 0.3522578 1.092514 25.63884 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM10847-INPUT_subsample-30e6.cc.plot.pdf

./GM10847-INPUT_subsample-30e6.cc.plot.pdf

./GM10847-INPUT_subsample-30e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM10847-INPUT_subsample-30e6.tagAlign.gz 60000000 220 0.476715712596496 105 0.4498359 1500 0.4484427 1.063047 20.29407 2 GM10847-INPUT_subsample-30e6.tagAlign.gz 60000000 220 0.476715712596496 105 0.4498359 1500 0.4484427 1.063047 20.29407 2 GM10847-INPUT_subsample-30e6.tagAlign.gz 60000000 220 0.47675838970271 105 0.4498321 1500 0.4484006 1.063242 19.80915 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM10847-INPUT_subsample-5e6.cc.plot.pdf

./GM10847-INPUT_subsample-5e6.cc.plot.pdf

./GM10847-INPUT_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM10847-INPUT_subsample-5e6.tagAlign.gz 10000000 225 0.168186551029637 105 0.1262186 1500 0.1235025 1.361807 16.45126 2 GM10847-INPUT_subsample-5e6.tagAlign.gz 10000000 225 0.168205464711046 105 0.1262549 1500 0.1232972 1.364227 15.18349 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM10847-INPUT_subsample-7.5e6.cc.plot.pdf

./GM10847-INPUT_subsample-7.5e6.cc.plot.pdf

./GM10847-INPUT_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM10847-INPUT_subsample-7.5e6.tagAlign.gz 15000000 225 0.214015263033986 100 0.1745592 1500 0.1724755 1.240844 19.93613 2 GM10847-INPUT_subsample-7.5e6.tagAlign.gz 15000000 225 0.213957366100107 100 0.1745312 1500 0.1724139 1.240952 19.62141 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-INPUT_merged.cc.plot.pdf

./GM12878-INPUT_merged.cc.plot.pdf

./GM12878-INPUT_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-INPUT_merged.tagAlign.gz 68386914 290 0.508571699335705 100 0.4855707 1500 0.4809414 1.05745 5.968581 2 GM12878-INPUT_merged.tagAlign.gz 68386914 290 0.508571699335705 100 0.4855707 1500 0.4809414 1.05745 5.968581 2 GM12878-INPUT_merged.tagAlign.gz 68386914 290 0.508571699335705 100 0.4855707 1500 0.4809414 1.05745 5.968581 2 GM12878-INPUT_merged.tagAlign.gz 68386914 290 0.508571699335705 100 0.4855707 1500 0.4809414 1.05745 5.968581 2 GM12878-INPUT_merged.tagAlign.gz 68386914 290 0.508571699335705 100 0.4855707 1500 0.4809414 1.05745 5.968581 2 GM12878-INPUT_merged.tagAlign.gz 68386914 290 0.508571699335705 100 0.4855707 1500 0.4809414 1.05745 5.968581 2 GM12878-INPUT_merged.tagAlign.gz 68386914 290 0.508571699335705 100 0.4855707 1500 0.4809414 1.05745 5.968581 2 GM12878-INPUT_merged.tagAlign.gz 68386914 290 0.508571699335705 100 0.4855707 1500 0.4809414 1.05745 5.968581 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-INPUT_subsample-0.1e6.cc.plot.pdf

./GM12878-INPUT_subsample-0.1e6.cc.plot.pdf

./GM12878-INPUT_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-INPUT_subsample-0.1e6.tagAlign.gz 200000 285 0.0478607940979303 100 0.006801295 1500 0.005755285 8.315973 40.25346 2 GM12878-INPUT_subsample-0.1e6.tagAlign.gz 200000 285 0.0478607940979303 100 0.006801295 1500 0.005755285 8.315973 40.25346 2 GM12878-INPUT_subsample-0.1e6.tagAlign.gz 200000 285 0.0478607940979303 100 0.006801295 1500 0.005755285 8.315973 40.25346 2 GM12878-INPUT_subsample-0.1e6.tagAlign.gz 200000 285 0.0478607940979303 100 0.006801295 1500 0.005755285 8.315973 40.25346 2 GM12878-INPUT_subsample-0.1e6.tagAlign.gz 200000 285 0.0478607940979303 100 0.006801295 1500 0.005755285 8.315973 40.25346 2 GM12878-INPUT_subsample-0.1e6.tagAlign.gz 200000 290 0.0472548131264642 105 0.006492213 1500 0.005354099 8.825914 36.81592 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-INPUT_subsample-0.25e6.cc.plot.pdf

./GM12878-INPUT_subsample-0.25e6.cc.plot.pdf

./GM12878-INPUT_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-INPUT_subsample-0.25e6.tagAlign.gz 500000 285 0.0566984204345534 105 0.01592214 1500 0.01332626 4.25464 16.70808 2 GM12878-INPUT_subsample-0.25e6.tagAlign.gz 500000 285 0.0566984204345534 105 0.01592214 1500 0.01332626 4.25464 16.70808 2 GM12878-INPUT_subsample-0.25e6.tagAlign.gz 500000 285 0.0566984204345534 105 0.01592214 1500 0.01332626 4.25464 16.70808 2 GM12878-INPUT_subsample-0.25e6.tagAlign.gz 500000 285 0.0566984204345534 105 0.01592214 1500 0.01332626 4.25464 16.70808 2 GM12878-INPUT_subsample-0.25e6.tagAlign.gz 500000 285 0.0566984204345534 105 0.01592214 1500 0.01332626 4.25464 16.70808 2 GM12878-INPUT_subsample-0.25e6.tagAlign.gz 500000 295 0.0568979865546444 105 0.0164158 1500 0.01385517 4.106624 16.80947 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-INPUT_subsample-0.5e6.cc.plot.pdf

./GM12878-INPUT_subsample-0.5e6.cc.plot.pdf

./GM12878-INPUT_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-INPUT_subsample-0.5e6.tagAlign.gz 1000000 285 0.0711710110231073 105 0.03011298 1500 0.02547708 2.793531 9.856535 2 GM12878-INPUT_subsample-0.5e6.tagAlign.gz 1000000 285 0.0711710110231073 105 0.03011298 1500 0.02547708 2.793531 9.856535 2 GM12878-INPUT_subsample-0.5e6.tagAlign.gz 1000000 285 0.0711710110231073 105 0.03011298 1500 0.02547708 2.793531 9.856535 2 GM12878-INPUT_subsample-0.5e6.tagAlign.gz 1000000 285 0.0711710110231073 105 0.03011298 1500 0.02547708 2.793531 9.856535 2 GM12878-INPUT_subsample-0.5e6.tagAlign.gz 1000000 285 0.0711710110231073 105 0.03011298 1500 0.02547708 2.793531 9.856535 2 GM12878-INPUT_subsample-0.5e6.tagAlign.gz 1000000 285 0.0709456527320425 105 0.03068375 1500 0.02580211 2.749607 9.247609 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-INPUT_subsample-10e6.cc.plot.pdf

./GM12878-INPUT_subsample-10e6.cc.plot.pdf

./GM12878-INPUT_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-INPUT_subsample-10e6.tagAlign.gz 20000000 285 0.252014663375956 105 0.2192868 1500 0.2163712 1.164733 12.22506 2 GM12878-INPUT_subsample-10e6.tagAlign.gz 20000000 285 0.252014663375956 105 0.2192868 1500 0.2163712 1.164733 12.22506 2 GM12878-INPUT_subsample-10e6.tagAlign.gz 20000000 290 0.252031916774071 100 0.219183 1500 0.2164281 1.164507 12.92355 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-INPUT_subsample-15e6.cc.plot.pdf

./GM12878-INPUT_subsample-15e6.cc.plot.pdf

./GM12878-INPUT_subsample-15e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-INPUT_subsample-15e6.tagAlign.gz 30000000 285 0.325203733544156 105 0.2952467 1500 0.29205 1.113521 10.37122 2 GM12878-INPUT_subsample-15e6.tagAlign.gz 30000000 285 0.325203733544156 105 0.2952467 1500 0.29205 1.113521 10.37122 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-INPUT_subsample-1e6.cc.plot.pdf

./GM12878-INPUT_subsample-1e6.cc.plot.pdf

./GM12878-INPUT_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-INPUT_subsample-1e6.tagAlign.gz 2000000 290 0.0906086229791196 100 0.04968726 1500 0.04353217 2.081417 7.648377 2 GM12878-INPUT_subsample-1e6.tagAlign.gz 2000000 290 0.0906086229791196 100 0.04968726 1500 0.04353217 2.081417 7.648377 2 GM12878-INPUT_subsample-1e6.tagAlign.gz 2000000 290 0.0906086229791196 100 0.04968726 1500 0.04353217 2.081417 7.648377 2 GM12878-INPUT_subsample-1e6.tagAlign.gz 2000000 290 0.0906086229791196 100 0.04968726 1500 0.04353217 2.081417 7.648377 2 GM12878-INPUT_subsample-1e6.tagAlign.gz 2000000 290 0.0906086229791196 100 0.04968726 1500 0.04353217 2.081417 7.648377 2 GM12878-INPUT_subsample-1e6.tagAlign.gz 2000000 290 0.091385236039378 100 0.05082338 1500 0.0442956 2.063077 7.213739 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-INPUT_subsample-2.5e6.cc.plot.pdf

./GM12878-INPUT_subsample-2.5e6.cc.plot.pdf

./GM12878-INPUT_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-INPUT_subsample-2.5e6.tagAlign.gz 5000000 290 0.107844553205185 105 0.06960253 1500 0.0664879 1.622018 13.27823 2 GM12878-INPUT_subsample-2.5e6.tagAlign.gz 5000000 290 0.107844553205185 105 0.06960253 1500 0.0664879 1.622018 13.27823 2 GM12878-INPUT_subsample-2.5e6.tagAlign.gz 5000000 290 0.107844553205185 105 0.06960253 1500 0.0664879 1.622018 13.27823 2 GM12878-INPUT_subsample-2.5e6.tagAlign.gz 5000000 290 0.107844553205185 105 0.06960253 1500 0.0664879 1.622018 13.27823 2 GM12878-INPUT_subsample-2.5e6.tagAlign.gz 5000000 290 0.107844553205185 105 0.06960253 1500 0.0664879 1.622018 13.27823 2 GM12878-INPUT_subsample-2.5e6.tagAlign.gz 5000000 290 0.107702813667491 100 0.06933477 1500 0.06640811 1.621832 14.10986 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-INPUT_subsample-20e6.cc.plot.pdf

./GM12878-INPUT_subsample-20e6.cc.plot.pdf

./GM12878-INPUT_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-INPUT_subsample-20e6.tagAlign.gz 40000000 285 0.385157738853397 105 0.3574691 1500 0.3538207 1.088568 8.58915 2 GM12878-INPUT_subsample-20e6.tagAlign.gz 40000000 285 0.385157738853397 105 0.3574691 1500 0.3538207 1.088568 8.58915 2 GM12878-INPUT_subsample-20e6.tagAlign.gz 40000000 285 0.385157738853397 105 0.3574691 1500 0.3538207 1.088568 8.58915 2 GM12878-INPUT_subsample-20e6.tagAlign.gz 40000000 285 0.385157738853397 105 0.3574691 1500 0.3538207 1.088568 8.58915 2 GM12878-INPUT_subsample-20e6.tagAlign.gz 40000000 285 0.385204855468966 105 0.3574162 1500 0.3538645 1.088566 8.823887 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-INPUT_subsample-25e6.cc.plot.pdf

./GM12878-INPUT_subsample-25e6.cc.plot.pdf

./GM12878-INPUT_subsample-25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-INPUT_subsample-25e6.tagAlign.gz 50000000 285 0.435188657774608 105 0.4093966 1500 0.4054072 1.073461 7.465072 2 GM12878-INPUT_subsample-25e6.tagAlign.gz 50000000 285 0.435188657774608 105 0.4093966 1500 0.4054072 1.073461 7.465072 2 GM12878-INPUT_subsample-25e6.tagAlign.gz 50000000 285 0.435188657774608 105 0.4093966 1500 0.4054072 1.073461 7.465072 2 GM12878-INPUT_subsample-25e6.tagAlign.gz 50000000 285 0.435188657774608 105 0.4093966 1500 0.4054072 1.073461 7.465072 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-INPUT_subsample-30e6.cc.plot.pdf

./GM12878-INPUT_subsample-30e6.cc.plot.pdf

./GM12878-INPUT_subsample-30e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-INPUT_subsample-30e6.tagAlign.gz 60000000 290 0.477671705065075 100 0.4534746 1500 0.4491217 1.063568 6.558883 2 GM12878-INPUT_subsample-30e6.tagAlign.gz 60000000 290 0.477671705065075 100 0.4534746 1500 0.4491217 1.063568 6.558883 2 GM12878-INPUT_subsample-30e6.tagAlign.gz 60000000 290 0.477671705065075 100 0.4534746 1500 0.4491217 1.063568 6.558883 2 GM12878-INPUT_subsample-30e6.tagAlign.gz 60000000 290 0.477671705065075 100 0.4534746 1500 0.4491217 1.063568 6.558883 2 GM12878-INPUT_subsample-30e6.tagAlign.gz 60000000 290 0.477640945284968 105 0.4534743 1500 0.4491152 1.063515 6.5439 2 GM12878-INPUT_subsample-30e6.tagAlign.gz 60000000 290 0.477640945284968 105 0.4534743 1500 0.4491152 1.063515 6.5439 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-INPUT_subsample-5e6.cc.plot.pdf

./GM12878-INPUT_subsample-5e6.cc.plot.pdf

./GM12878-INPUT_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-INPUT_subsample-5e6.tagAlign.gz 10000000 285 0.160786202812502 100 0.1244493 1500 0.1217019 1.321148 14.22596 2 GM12878-INPUT_subsample-5e6.tagAlign.gz 10000000 285 0.160786202812502 100 0.1244493 1500 0.1217019 1.321148 14.22596 2 GM12878-INPUT_subsample-5e6.tagAlign.gz 10000000 285 0.160512013319066 105 0.1242963 1500 0.1216253 1.319726 14.55881 2 GM12878-INPUT_subsample-5e6.tagAlign.gz 10000000 285 0.160512013319066 105 0.1242963 1500 0.1216253 1.319726 14.55881 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-INPUT_subsample-7.5e6.cc.plot.pdf

./GM12878-INPUT_subsample-7.5e6.cc.plot.pdf

./GM12878-INPUT_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-INPUT_subsample-7.5e6.tagAlign.gz 15000000 290 0.209000293947999 100 0.1743956 1500 0.1718292 1.216326 14.48413 2 GM12878-INPUT_subsample-7.5e6.tagAlign.gz 15000000 290 0.209000293947999 100 0.1743956 1500 0.1718292 1.216326 14.48413 2 GM12878-INPUT_subsample-7.5e6.tagAlign.gz 15000000 285 0.208905190058207 105 0.1745132 1500 0.1718592 1.21556 13.95857 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18505-INPUT_merged.cc.plot.pdf

./GM18505-INPUT_merged.cc.plot.pdf

./GM18505-INPUT_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18505-INPUT_merged.tagAlign.gz 70744120 215 0.516425812791603 105 0.4901815 1500 0.4886827 1.056771 18.51093 2 GM18505-INPUT_merged.tagAlign.gz 70744120 215 0.516425812791603 105 0.4901815 1500 0.4886827 1.056771 18.51093 2 GM18505-INPUT_merged.tagAlign.gz 70744120 215 0.516425812791603 105 0.4901815 1500 0.4886827 1.056771 18.51093 2 GM18505-INPUT_merged.tagAlign.gz 70744120 215 0.516425812791603 105 0.4901815 1500 0.4886827 1.056771 18.51093 2 GM18505-INPUT_merged.tagAlign.gz 70744120 215 0.516425812791603 105 0.4901815 1500 0.4886827 1.056771 18.51093 2 GM18505-INPUT_merged.tagAlign.gz 70744120 215 0.516425812791603 105 0.4901815 1500 0.4886827 1.056771 18.51093 2 GM18505-INPUT_merged.tagAlign.gz 70744120 215 0.516425812791603 105 0.4901815 1500 0.4886827 1.056771 18.51093 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18505-INPUT_subsample-0.1e6.cc.plot.pdf

./GM18505-INPUT_subsample-0.1e6.cc.plot.pdf

./GM18505-INPUT_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18505-INPUT_subsample-0.1e6.tagAlign.gz 200000 215 0.053297074592921 100 0.003538621 1500 0.003291545 16.19211 202.3899 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18505-INPUT_subsample-0.25e6.cc.plot.pdf

./GM18505-INPUT_subsample-0.25e6.cc.plot.pdf

./GM18505-INPUT_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18505-INPUT_subsample-0.25e6.tagAlign.gz 500000 220 0.0573821649709321 105 0.007940606 1500 0.007138701 8.03818 62.65511 2 GM18505-INPUT_subsample-0.25e6.tagAlign.gz 500000 215 0.0569246814555459 95 0.007922958 1500 0.007215633 7.889077 70.27752 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18505-INPUT_subsample-0.5e6.cc.plot.pdf

./GM18505-INPUT_subsample-0.5e6.cc.plot.pdf

./GM18505-INPUT_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18505-INPUT_subsample-0.5e6.tagAlign.gz 1000000 210 0.0646043063454096 105 0.01563058 1500 0.01410287 4.580934 33.05681 2 GM18505-INPUT_subsample-0.5e6.tagAlign.gz 1000000 210 0.0646043063454096 105 0.01563058 1500 0.01410287 4.580934 33.05681 2 GM18505-INPUT_subsample-0.5e6.tagAlign.gz 1000000 210 0.0646043063454096 105 0.01563058 1500 0.01410287 4.580934 33.05681 2 GM18505-INPUT_subsample-0.5e6.tagAlign.gz 1000000 215 0.0641650411967476 100 0.01540023 1500 0.01414527 4.536147 39.8577 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18505-INPUT_subsample-10e6.cc.plot.pdf

./GM18505-INPUT_subsample-10e6.cc.plot.pdf

./GM18505-INPUT_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18505-INPUT_subsample-10e6.tagAlign.gz 20000000 215 0.256164709572596 105 0.2170095 1500 0.2151742 1.190499 22.33478 2 GM18505-INPUT_subsample-10e6.tagAlign.gz 20000000 215 0.256164415482648 105 0.2168694 1500 0.2152053 1.190326 24.61263 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18505-INPUT_subsample-1e6.cc.plot.pdf

./GM18505-INPUT_subsample-1e6.cc.plot.pdf

./GM18505-INPUT_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18505-INPUT_subsample-1e6.tagAlign.gz 2000000 215 0.0784384305772653 105 0.03006866 1500 0.02780755 2.82076 22.39201 2 GM18505-INPUT_subsample-1e6.tagAlign.gz 2000000 215 0.0784384305772653 105 0.03006866 1500 0.02780755 2.82076 22.39201 2 GM18505-INPUT_subsample-1e6.tagAlign.gz 2000000 215 0.0784384305772653 105 0.03006866 1500 0.02780755 2.82076 22.39201 2 GM18505-INPUT_subsample-1e6.tagAlign.gz 2000000 215 0.0784384305772653 105 0.03006866 1500 0.02780755 2.82076 22.39201 2 GM18505-INPUT_subsample-1e6.tagAlign.gz 2000000 215 0.0784384305772653 105 0.03006866 1500 0.02780755 2.82076 22.39201 2 GM18505-INPUT_subsample-1e6.tagAlign.gz 2000000 215 0.0786346784342184 105 0.02992532 1500 0.02781788 2.826768 24.11303 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18505-INPUT_subsample-2.5e6.cc.plot.pdf

./GM18505-INPUT_subsample-2.5e6.cc.plot.pdf

./GM18505-INPUT_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18505-INPUT_subsample-2.5e6.tagAlign.gz 5000000 215 0.116246221813898 105 0.06952778 1500 0.06642911 1.749929 16.07696 2 GM18505-INPUT_subsample-2.5e6.tagAlign.gz 5000000 215 0.116246221813898 105 0.06952778 1500 0.06642911 1.749929 16.07696 2 GM18505-INPUT_subsample-2.5e6.tagAlign.gz 5000000 215 0.116246221813898 105 0.06952778 1500 0.06642911 1.749929 16.07696 2 GM18505-INPUT_subsample-2.5e6.tagAlign.gz 5000000 215 0.116246221813898 105 0.06952778 1500 0.06642911 1.749929 16.07696 2 GM18505-INPUT_subsample-2.5e6.tagAlign.gz 5000000 215 0.116246221813898 105 0.06952778 1500 0.06642911 1.749929 16.07696 2 GM18505-INPUT_subsample-2.5e6.tagAlign.gz 5000000 215 0.115902687794306 100 0.06960991 1500 0.06652237 1.742311 15.99343 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18505-INPUT_subsample-20e6.cc.plot.pdf

./GM18505-INPUT_subsample-20e6.cc.plot.pdf

./GM18505-INPUT_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18505-INPUT_subsample-20e6.tagAlign.gz 40000000 215 0.386042631526994 105 0.3532359 1500 0.3519562 1.096849 26.63538 2 GM18505-INPUT_subsample-20e6.tagAlign.gz 40000000 215 0.386042631526994 105 0.3532359 1500 0.3519562 1.096849 26.63538 2 GM18505-INPUT_subsample-20e6.tagAlign.gz 40000000 215 0.38603871990695 105 0.3532944 1500 0.3519599 1.096826 25.53619 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18505-INPUT_subsample-30e6.cc.plot.pdf

./GM18505-INPUT_subsample-30e6.cc.plot.pdf

./GM18505-INPUT_subsample-30e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18505-INPUT_subsample-30e6.tagAlign.gz 60000000 215 0.477709430912001 105 0.4495544 1500 0.4481198 1.066031 20.62564 2 GM18505-INPUT_subsample-30e6.tagAlign.gz 60000000 215 0.477709430912001 105 0.4495544 1500 0.4481198 1.066031 20.62564 2 GM18505-INPUT_subsample-30e6.tagAlign.gz 60000000 215 0.477740391838574 105 0.4495697 1500 0.4481332 1.066068 20.60955 2 GM18505-INPUT_subsample-30e6.tagAlign.gz 60000000 215 0.477740391838574 105 0.4495697 1500 0.4481332 1.066068 20.60955 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18505-INPUT_subsample-5e6.cc.plot.pdf

./GM18505-INPUT_subsample-5e6.cc.plot.pdf

./GM18505-INPUT_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18505-INPUT_subsample-5e6.tagAlign.gz 10000000 215 0.170286073607848 105 0.1266047 1500 0.123485 1.379002 15.00179 2 GM18505-INPUT_subsample-5e6.tagAlign.gz 10000000 215 0.170522178478066 100 0.1267095 1500 0.123597 1.379663 15.07641 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18505-INPUT_subsample-7.5e6.cc.plot.pdf

./GM18505-INPUT_subsample-7.5e6.cc.plot.pdf

./GM18505-INPUT_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18505-INPUT_subsample-7.5e6.tagAlign.gz 15000000 215 0.215759949102557 100 0.174447 1500 0.172126 1.2535 18.79924 2 GM18505-INPUT_subsample-7.5e6.tagAlign.gz 15000000 215 0.215844958885134 105 0.1745985 1500 0.1722452 1.253126 18.52709 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18526-INPUT_merged.cc.plot.pdf

./GM18526-INPUT_merged.cc.plot.pdf

./GM18526-INPUT_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18526-INPUT_merged.tagAlign.gz 81567424 220 0.549994002378419 105 0.526612 1500 0.5246079 1.048391 12.66752 2 GM18526-INPUT_merged.tagAlign.gz 81567424 220 0.549994002378419 105 0.526612 1500 0.5246079 1.048391 12.66752 2 GM18526-INPUT_merged.tagAlign.gz 81567424 220 0.549994002378419 105 0.526612 1500 0.5246079 1.048391 12.66752 2 GM18526-INPUT_merged.tagAlign.gz 81567424 220 0.549994002378419 105 0.526612 1500 0.5246079 1.048391 12.66752 2 GM18526-INPUT_merged.tagAlign.gz 81567424 220 0.549994002378419 105 0.526612 1500 0.5246079 1.048391 12.66752 2 GM18526-INPUT_merged.tagAlign.gz 81567424 220 0.549994002378419 105 0.526612 1500 0.5246079 1.048391 12.66752 2 GM18526-INPUT_merged.tagAlign.gz 81567424 220 0.549994002378419 105 0.526612 1500 0.5246079 1.048391 12.66752 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18526-INPUT_subsample-0.1e6.cc.plot.pdf

./GM18526-INPUT_subsample-0.1e6.cc.plot.pdf

./GM18526-INPUT_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18526-INPUT_subsample-0.1e6.tagAlign.gz 200000 215 0.0511575704823938 105 0.003395199 1500 0.003127168 16.35908 179.1971 2 GM18526-INPUT_subsample-0.1e6.tagAlign.gz 200000 215 0.0511575704823938 105 0.003395199 1500 0.003127168 16.35908 179.1971 2 GM18526-INPUT_subsample-0.1e6.tagAlign.gz 200000 215 0.0511575704823938 105 0.003395199 1500 0.003127168 16.35908 179.1971 2 GM18526-INPUT_subsample-0.1e6.tagAlign.gz 200000 215 0.0511575704823938 105 0.003395199 1500 0.003127168 16.35908 179.1971 2 GM18526-INPUT_subsample-0.1e6.tagAlign.gz 200000 215 0.0511575704823938 105 0.003395199 1500 0.003127168 16.35908 179.1971 2 GM18526-INPUT_subsample-0.1e6.tagAlign.gz 200000 220 0.050536789243655 105 0.003282634 1500 0.003165137 15.9667 403.1752 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18526-INPUT_subsample-0.25e6.cc.plot.pdf

./GM18526-INPUT_subsample-0.25e6.cc.plot.pdf

./GM18526-INPUT_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18526-INPUT_subsample-0.25e6.tagAlign.gz 500000 220 0.0550284184207919 105 0.008029987 1500 0.007326397 7.51098 67.79798 2 GM18526-INPUT_subsample-0.25e6.tagAlign.gz 500000 220 0.0550284184207919 105 0.008029987 1500 0.007326397 7.51098 67.79798 2 GM18526-INPUT_subsample-0.25e6.tagAlign.gz 500000 220 0.0550284184207919 105 0.008029987 1500 0.007326397 7.51098 67.79798 2 GM18526-INPUT_subsample-0.25e6.tagAlign.gz 500000 220 0.0550284184207919 105 0.008029987 1500 0.007326397 7.51098 67.79798 2 GM18526-INPUT_subsample-0.25e6.tagAlign.gz 500000 220 0.0550284184207919 105 0.008029987 1500 0.007326397 7.51098 67.79798 2 GM18526-INPUT_subsample-0.25e6.tagAlign.gz 500000 220 0.0546311017807129 105 0.007902157 1500 0.007108781 7.685016 59.89886 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18526-INPUT_subsample-0.5e6.cc.plot.pdf

./GM18526-INPUT_subsample-0.5e6.cc.plot.pdf

./GM18526-INPUT_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18526-INPUT_subsample-0.5e6.tagAlign.gz 1000000 220 0.0625819415742215 105 0.01548812 1500 0.01416646 4.417613 36.63239 2 GM18526-INPUT_subsample-0.5e6.tagAlign.gz 1000000 220 0.0625819415742215 105 0.01548812 1500 0.01416646 4.417613 36.63239 2 GM18526-INPUT_subsample-0.5e6.tagAlign.gz 1000000 220 0.0625819415742215 105 0.01548812 1500 0.01416646 4.417613 36.63239 2 GM18526-INPUT_subsample-0.5e6.tagAlign.gz 1000000 220 0.0625819415742215 105 0.01548812 1500 0.01416646 4.417613 36.63239 2 GM18526-INPUT_subsample-0.5e6.tagAlign.gz 1000000 220 0.0625819415742215 105 0.01548812 1500 0.01416646 4.417613 36.63239 2 GM18526-INPUT_subsample-0.5e6.tagAlign.gz 1000000 220 0.0624757749539076 105 0.01559402 1500 0.01420339 4.398653 34.71255 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18526-INPUT_subsample-10e6.cc.plot.pdf

./GM18526-INPUT_subsample-10e6.cc.plot.pdf

./GM18526-INPUT_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18526-INPUT_subsample-10e6.tagAlign.gz 20000000 220 0.255207458231977 105 0.2176984 1500 0.2157815 1.182712 20.56739 2 GM18526-INPUT_subsample-10e6.tagAlign.gz 20000000 220 0.255194517876553 105 0.2177762 1500 0.2157548 1.182799 19.51123 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18526-INPUT_subsample-1e6.cc.plot.pdf

./GM18526-INPUT_subsample-1e6.cc.plot.pdf

./GM18526-INPUT_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18526-INPUT_subsample-1e6.tagAlign.gz 2000000 215 0.0762350914945295 105 0.0301386 1500 0.02777075 2.745157 20.46768 2 GM18526-INPUT_subsample-1e6.tagAlign.gz 2000000 215 0.0762350914945295 105 0.0301386 1500 0.02777075 2.745157 20.46768 2 GM18526-INPUT_subsample-1e6.tagAlign.gz 2000000 215 0.0762350914945295 105 0.0301386 1500 0.02777075 2.745157 20.46768 2 GM18526-INPUT_subsample-1e6.tagAlign.gz 2000000 215 0.0762350914945295 105 0.0301386 1500 0.02777075 2.745157 20.46768 2 GM18526-INPUT_subsample-1e6.tagAlign.gz 2000000 215 0.0762350914945295 105 0.0301386 1500 0.02777075 2.745157 20.46768 2 GM18526-INPUT_subsample-1e6.tagAlign.gz 2000000 220 0.0765674426245393 105 0.0300251 1500 0.02778118 2.75609 21.74157 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18526-INPUT_subsample-2.5e6.cc.plot.pdf

./GM18526-INPUT_subsample-2.5e6.cc.plot.pdf

./GM18526-INPUT_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18526-INPUT_subsample-2.5e6.tagAlign.gz 5000000 220 0.114575444950931 105 0.07003958 1500 0.06662882 1.719608 14.05748 2 GM18526-INPUT_subsample-2.5e6.tagAlign.gz 5000000 220 0.114575444950931 105 0.07003958 1500 0.06662882 1.719608 14.05748 2 GM18526-INPUT_subsample-2.5e6.tagAlign.gz 5000000 220 0.114575444950931 105 0.07003958 1500 0.06662882 1.719608 14.05748 2 GM18526-INPUT_subsample-2.5e6.tagAlign.gz 5000000 220 0.114575444950931 105 0.07003958 1500 0.06662882 1.719608 14.05748 2 GM18526-INPUT_subsample-2.5e6.tagAlign.gz 5000000 220 0.114575444950931 105 0.07003958 1500 0.06662882 1.719608 14.05748 2 GM18526-INPUT_subsample-2.5e6.tagAlign.gz 5000000 220 0.114431156356252 105 0.06996355 1500 0.06665487 1.716771 14.43967 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18526-INPUT_subsample-20e6.cc.plot.pdf

./GM18526-INPUT_subsample-20e6.cc.plot.pdf

./GM18526-INPUT_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18526-INPUT_subsample-20e6.tagAlign.gz 40000000 220 0.385531858847824 105 0.3542528 1500 0.3526716 1.093175 20.78253 2 GM18526-INPUT_subsample-20e6.tagAlign.gz 40000000 220 0.385531858847824 105 0.3542528 1500 0.3526716 1.093175 20.78253 2 GM18526-INPUT_subsample-20e6.tagAlign.gz 40000000 220 0.38554886304964 105 0.3543344 1500 0.3527241 1.093061 20.38473 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18526-INPUT_subsample-30e6.cc.plot.pdf

./GM18526-INPUT_subsample-30e6.cc.plot.pdf

./GM18526-INPUT_subsample-30e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18526-INPUT_subsample-30e6.tagAlign.gz 60000000 220 0.477556476576134 105 0.4507404 1500 0.4489181 1.063794 15.71561 2 GM18526-INPUT_subsample-30e6.tagAlign.gz 60000000 220 0.477556476576134 105 0.4507404 1500 0.4489181 1.063794 15.71561 2 GM18526-INPUT_subsample-30e6.tagAlign.gz 60000000 220 0.477551431646025 105 0.4506842 1500 0.4488905 1.063848 15.97897 2 GM18526-INPUT_subsample-30e6.tagAlign.gz 60000000 220 0.477551431646025 105 0.4506842 1500 0.4488905 1.063848 15.97897 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18526-INPUT_subsample-5e6.cc.plot.pdf

./GM18526-INPUT_subsample-5e6.cc.plot.pdf

./GM18526-INPUT_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18526-INPUT_subsample-5e6.tagAlign.gz 10000000 220 0.168983253069221 100 0.1269997 1500 0.1238798 1.36409 14.45673 2 GM18526-INPUT_subsample-5e6.tagAlign.gz 10000000 220 0.168705523346741 100 0.126929 1500 0.1238426 1.362257 14.53573 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18526-INPUT_subsample-7.5e6.cc.plot.pdf

./GM18526-INPUT_subsample-7.5e6.cc.plot.pdf

./GM18526-INPUT_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18526-INPUT_subsample-7.5e6.tagAlign.gz 15000000 220 0.214951896626672 105 0.1753419 1500 0.1726662 1.244899 15.80331 2 GM18526-INPUT_subsample-7.5e6.tagAlign.gz 15000000 220 0.214648608278954 105 0.1754213 1500 0.1728988 1.24147 16.55108 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18951-INPUT_merged.cc.plot.pdf

./GM18951-INPUT_merged.cc.plot.pdf

./GM18951-INPUT_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18951-INPUT_merged.tagAlign.gz 69466042 230 0.50904428783011 95 0.4858426 1500 0.4847469 1.050124 22.17492 2 GM18951-INPUT_merged.tagAlign.gz 69466042 230 0.50904428783011 95 0.4858426 1500 0.4847469 1.050124 22.17492 2 GM18951-INPUT_merged.tagAlign.gz 69466042 230 0.50904428783011 95 0.4858426 1500 0.4847469 1.050124 22.17492 2 GM18951-INPUT_merged.tagAlign.gz 69466042 230 0.50904428783011 95 0.4858426 1500 0.4847469 1.050124 22.17492 2 GM18951-INPUT_merged.tagAlign.gz 69466042 230 0.50904428783011 95 0.4858426 1500 0.4847469 1.050124 22.17492 2 GM18951-INPUT_merged.tagAlign.gz 69466042 230 0.50904428783011 95 0.4858426 1500 0.4847469 1.050124 22.17492 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18951-INPUT_subsample-0.1e6.cc.plot.pdf

./GM18951-INPUT_subsample-0.1e6.cc.plot.pdf

./GM18951-INPUT_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18951-INPUT_subsample-0.1e6.tagAlign.gz 200000 220 0.0464296585207642 105 0.003389281 1500 0.003181577 14.59328 208.2204 2 GM18951-INPUT_subsample-0.1e6.tagAlign.gz 200000 220 0.0464296585207642 105 0.003389281 1500 0.003181577 14.59328 208.2204 2 GM18951-INPUT_subsample-0.1e6.tagAlign.gz 200000 220 0.0464296585207642 105 0.003389281 1500 0.003181577 14.59328 208.2204 2 GM18951-INPUT_subsample-0.1e6.tagAlign.gz 200000 220 0.0464296585207642 105 0.003389281 1500 0.003181577 14.59328 208.2204 2 GM18951-INPUT_subsample-0.1e6.tagAlign.gz 200000 220 0.0464296585207642 105 0.003389281 1500 0.003181577 14.59328 208.2204 2 GM18951-INPUT_subsample-0.1e6.tagAlign.gz 200000 230 0.047428010532283 100 0.003344378 1500 0.00315824 15.01723 237.8326 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18951-INPUT_subsample-0.25e6.cc.plot.pdf

./GM18951-INPUT_subsample-0.25e6.cc.plot.pdf

./GM18951-INPUT_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18951-INPUT_subsample-0.25e6.tagAlign.gz 500000 220 0.0510871453262114 105 0.007790003 1500 0.007248757 7.047711 80.99522 2 GM18951-INPUT_subsample-0.25e6.tagAlign.gz 500000 220 0.0510871453262114 105 0.007790003 1500 0.007248757 7.047711 80.99522 2 GM18951-INPUT_subsample-0.25e6.tagAlign.gz 500000 220 0.0510871453262114 105 0.007790003 1500 0.007248757 7.047711 80.99522 2 GM18951-INPUT_subsample-0.25e6.tagAlign.gz 500000 220 0.0510871453262114 105 0.007790003 1500 0.007248757 7.047711 80.99522 2 GM18951-INPUT_subsample-0.25e6.tagAlign.gz 500000 220 0.0510871453262114 105 0.007790003 1500 0.007248757 7.047711 80.99522 2 GM18951-INPUT_subsample-0.25e6.tagAlign.gz 500000 230 0.0514165896907928 105 0.007766045 1500 0.00716142 7.179664 73.1944 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18951-INPUT_subsample-0.5e6.cc.plot.pdf

./GM18951-INPUT_subsample-0.5e6.cc.plot.pdf

./GM18951-INPUT_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18951-INPUT_subsample-0.5e6.tagAlign.gz 1000000 225 0.0592366454910375 105 0.01556387 1500 0.01443831 4.10274 39.80096 2 GM18951-INPUT_subsample-0.5e6.tagAlign.gz 1000000 225 0.0592366454910375 105 0.01556387 1500 0.01443831 4.10274 39.80096 2 GM18951-INPUT_subsample-0.5e6.tagAlign.gz 1000000 225 0.0592366454910375 105 0.01556387 1500 0.01443831 4.10274 39.80096 2 GM18951-INPUT_subsample-0.5e6.tagAlign.gz 1000000 225 0.0592366454910375 105 0.01556387 1500 0.01443831 4.10274 39.80096 2 GM18951-INPUT_subsample-0.5e6.tagAlign.gz 1000000 225 0.0592366454910375 105 0.01556387 1500 0.01443831 4.10274 39.80096 2 GM18951-INPUT_subsample-0.5e6.tagAlign.gz 1000000 225 0.0591024829297853 105 0.01551297 1500 0.01432907 4.124655 37.81869 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18951-INPUT_subsample-10e6.cc.plot.pdf

./GM18951-INPUT_subsample-10e6.cc.plot.pdf

./GM18951-INPUT_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18951-INPUT_subsample-10e6.tagAlign.gz 20000000 230 0.250834244423785 100 0.2163198 1500 0.214921 1.1671 25.67417 2 GM18951-INPUT_subsample-10e6.tagAlign.gz 20000000 225 0.250807683490984 105 0.2161938 1500 0.2149236 1.166962 28.25096 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18951-INPUT_subsample-1e6.cc.plot.pdf

./GM18951-INPUT_subsample-1e6.cc.plot.pdf

./GM18951-INPUT_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18951-INPUT_subsample-1e6.tagAlign.gz 2000000 230 0.0729700791692307 100 0.03011377 1500 0.02802623 2.603635 21.52959 2 GM18951-INPUT_subsample-1e6.tagAlign.gz 2000000 230 0.0729700791692307 100 0.03011377 1500 0.02802623 2.603635 21.52959 2 GM18951-INPUT_subsample-1e6.tagAlign.gz 2000000 230 0.0729700791692307 100 0.03011377 1500 0.02802623 2.603635 21.52959 2 GM18951-INPUT_subsample-1e6.tagAlign.gz 2000000 230 0.0729700791692307 100 0.03011377 1500 0.02802623 2.603635 21.52959 2 GM18951-INPUT_subsample-1e6.tagAlign.gz 2000000 230 0.0729700791692307 100 0.03011377 1500 0.02802623 2.603635 21.52959 2 GM18951-INPUT_subsample-1e6.tagAlign.gz 2000000 225 0.0734901106678199 105 0.03016163 1500 0.02792397 2.631793 20.36336 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18951-INPUT_subsample-2.5e6.cc.plot.pdf

./GM18951-INPUT_subsample-2.5e6.cc.plot.pdf

./GM18951-INPUT_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18951-INPUT_subsample-2.5e6.tagAlign.gz 5000000 225 0.111920903598986 100 0.07071594 1500 0.06710066 1.667955 12.39747 2 GM18951-INPUT_subsample-2.5e6.tagAlign.gz 5000000 225 0.111920903598986 100 0.07071594 1500 0.06710066 1.667955 12.39747 2 GM18951-INPUT_subsample-2.5e6.tagAlign.gz 5000000 225 0.111920903598986 100 0.07071594 1500 0.06710066 1.667955 12.39747 2 GM18951-INPUT_subsample-2.5e6.tagAlign.gz 5000000 225 0.111920903598986 100 0.07071594 1500 0.06710066 1.667955 12.39747 2 GM18951-INPUT_subsample-2.5e6.tagAlign.gz 5000000 225 0.111920903598986 100 0.07071594 1500 0.06710066 1.667955 12.39747 2 GM18951-INPUT_subsample-2.5e6.tagAlign.gz 5000000 225 0.111839018744494 100 0.07070762 1500 0.06697569 1.669845 12.02148 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18951-INPUT_subsample-20e6.cc.plot.pdf

./GM18951-INPUT_subsample-20e6.cc.plot.pdf

./GM18951-INPUT_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18951-INPUT_subsample-20e6.tagAlign.gz 40000000 225 0.381979391237298 105 0.3531079 1500 0.3522042 1.08454 32.9492 2 GM18951-INPUT_subsample-20e6.tagAlign.gz 40000000 230 0.381943568954206 105 0.3531578 1500 0.3522114 1.084416 31.41493 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18951-INPUT_subsample-30e6.cc.plot.pdf

./GM18951-INPUT_subsample-30e6.cc.plot.pdf

./GM18951-INPUT_subsample-30e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18951-INPUT_subsample-30e6.tagAlign.gz 60000000 230 0.474379134308557 95 0.449634 1500 0.4486018 1.057461 24.97455 2 GM18951-INPUT_subsample-30e6.tagAlign.gz 60000000 230 0.474369633797578 95 0.4496352 1500 0.4485612 1.057536 24.03058 2 GM18951-INPUT_subsample-30e6.tagAlign.gz 60000000 230 0.474369633797578 95 0.4496352 1500 0.4485612 1.057536 24.03058 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18951-INPUT_subsample-5e6.cc.plot.pdf

./GM18951-INPUT_subsample-5e6.cc.plot.pdf

./GM18951-INPUT_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18951-INPUT_subsample-5e6.tagAlign.gz 10000000 225 0.165600669726382 105 0.1270794 1500 0.1240688 1.334749 13.795 2 GM18951-INPUT_subsample-5e6.tagAlign.gz 10000000 230 0.165513110712638 105 0.1270375 1500 0.1240514 1.33423 13.88472 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18951-INPUT_subsample-7.5e6.cc.plot.pdf

./GM18951-INPUT_subsample-7.5e6.cc.plot.pdf

./GM18951-INPUT_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18951-INPUT_subsample-7.5e6.tagAlign.gz 15000000 230 0.210587775535216 100 0.1742505 1500 0.1719407 1.22477 16.73123 2 GM18951-INPUT_subsample-7.5e6.tagAlign.gz 15000000 225 0.210701344745325 105 0.1743631 1500 0.1721554 1.223902 17.4604 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-INPUT_merged.cc.plot.pdf

./GM19239-INPUT_merged.cc.plot.pdf

./GM19239-INPUT_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-INPUT_merged.tagAlign.gz 97135720 235 0.593422359025972 105 0.5726526 1500 0.5676765 1.045353 5.173887 2 GM19239-INPUT_merged.tagAlign.gz 97135720 235 0.593422359025972 105 0.5726526 1500 0.5676765 1.045353 5.173887 2 GM19239-INPUT_merged.tagAlign.gz 97135720 235 0.593422359025972 105 0.5726526 1500 0.5676765 1.045353 5.173887 2 GM19239-INPUT_merged.tagAlign.gz 97135720 235 0.593422359025972 105 0.5726526 1500 0.5676765 1.045353 5.173887 2 GM19239-INPUT_merged.tagAlign.gz 97135720 235 0.593422359025972 105 0.5726526 1500 0.5676765 1.045353 5.173887 2 GM19239-INPUT_merged.tagAlign.gz 97135720 235 0.593422359025972 105 0.5726526 1500 0.5676765 1.045353 5.173887 2 GM19239-INPUT_merged.tagAlign.gz 97135720 235 0.593422359025972 105 0.5726526 1500 0.5676765 1.045353 5.173887 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-INPUT_subsample-0.1e6.cc.plot.pdf

./GM19239-INPUT_subsample-0.1e6.cc.plot.pdf

./GM19239-INPUT_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-INPUT_subsample-0.1e6.tagAlign.gz 200000 235 0.0497450398093131 100 0.00568673 1500 0.004758797 10.45328 48.48004 2 GM19239-INPUT_subsample-0.1e6.tagAlign.gz 200000 235 0.0497450398093131 100 0.00568673 1500 0.004758797 10.45328 48.48004 2 GM19239-INPUT_subsample-0.1e6.tagAlign.gz 200000 235 0.0497450398093131 100 0.00568673 1500 0.004758797 10.45328 48.48004 2 GM19239-INPUT_subsample-0.1e6.tagAlign.gz 200000 235 0.0497450398093131 100 0.00568673 1500 0.004758797 10.45328 48.48004 2 GM19239-INPUT_subsample-0.1e6.tagAlign.gz 200000 235 0.0497450398093131 100 0.00568673 1500 0.004758797 10.45328 48.48004 2 GM19239-INPUT_subsample-0.1e6.tagAlign.gz 200000 230 0.0497517494113414 95 0.005309562 1500 0.004564444 10.89985 60.64453 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-INPUT_subsample-0.25e6.cc.plot.pdf

./GM19239-INPUT_subsample-0.25e6.cc.plot.pdf

./GM19239-INPUT_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-INPUT_subsample-0.25e6.tagAlign.gz 500000 235 0.056047900412926 100 0.01258323 1500 0.01073408 5.22149 24.50519 2 GM19239-INPUT_subsample-0.25e6.tagAlign.gz 500000 235 0.056047900412926 100 0.01258323 1500 0.01073408 5.22149 24.50519 2 GM19239-INPUT_subsample-0.25e6.tagAlign.gz 500000 235 0.056047900412926 100 0.01258323 1500 0.01073408 5.22149 24.50519 2 GM19239-INPUT_subsample-0.25e6.tagAlign.gz 500000 235 0.056047900412926 100 0.01258323 1500 0.01073408 5.22149 24.50519 2 GM19239-INPUT_subsample-0.25e6.tagAlign.gz 500000 235 0.056047900412926 100 0.01258323 1500 0.01073408 5.22149 24.50519 2 GM19239-INPUT_subsample-0.25e6.tagAlign.gz 500000 235 0.0570082217831417 100 0.01303945 1500 0.01123865 5.072517 25.41621 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-INPUT_subsample-0.5e6.cc.plot.pdf

./GM19239-INPUT_subsample-0.5e6.cc.plot.pdf

./GM19239-INPUT_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-INPUT_subsample-0.5e6.tagAlign.gz 1000000 235 0.0668142975301525 105 0.02351835 1500 0.02063266 3.238279 16.00367 2 GM19239-INPUT_subsample-0.5e6.tagAlign.gz 1000000 235 0.0668142975301525 105 0.02351835 1500 0.02063266 3.238279 16.00367 2 GM19239-INPUT_subsample-0.5e6.tagAlign.gz 1000000 235 0.0668142975301525 105 0.02351835 1500 0.02063266 3.238279 16.00367 2 GM19239-INPUT_subsample-0.5e6.tagAlign.gz 1000000 235 0.0668142975301525 105 0.02351835 1500 0.02063266 3.238279 16.00367 2 GM19239-INPUT_subsample-0.5e6.tagAlign.gz 1000000 235 0.0668142975301525 105 0.02351835 1500 0.02063266 3.238279 16.00367 2 GM19239-INPUT_subsample-0.5e6.tagAlign.gz 1000000 235 0.0682969997359976 105 0.02379047 1500 0.02077764 3.287043 15.77234 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-INPUT_subsample-10e6.cc.plot.pdf

./GM19239-INPUT_subsample-10e6.cc.plot.pdf

./GM19239-INPUT_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-INPUT_subsample-10e6.tagAlign.gz 20000000 235 0.25543973367046 105 0.2199154 1500 0.2175158 1.17435 15.80416 2 GM19239-INPUT_subsample-10e6.tagAlign.gz 20000000 235 0.25538095113157 105 0.2199485 1500 0.2174091 1.174656 14.9532 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-INPUT_subsample-15e6.cc.plot.pdf

./GM19239-INPUT_subsample-15e6.cc.plot.pdf

./GM19239-INPUT_subsample-15e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-INPUT_subsample-15e6.tagAlign.gz 30000000 235 0.328675139397314 100 0.2963479 1500 0.2933872 1.120278 11.91876 2 GM19239-INPUT_subsample-15e6.tagAlign.gz 30000000 235 0.328675139397314 100 0.2963479 1500 0.2933872 1.120278 11.91876 2 GM19239-INPUT_subsample-15e6.tagAlign.gz 30000000 235 0.328675139397314 100 0.2963479 1500 0.2933872 1.120278 11.91876 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-INPUT_subsample-1e6.cc.plot.pdf

./GM19239-INPUT_subsample-1e6.cc.plot.pdf

./GM19239-INPUT_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-INPUT_subsample-1e6.tagAlign.gz 2000000 235 0.0875296108250924 100 0.04441875 1500 0.03930457 2.226957 9.429672 2 GM19239-INPUT_subsample-1e6.tagAlign.gz 2000000 235 0.0875296108250924 100 0.04441875 1500 0.03930457 2.226957 9.429672 2 GM19239-INPUT_subsample-1e6.tagAlign.gz 2000000 235 0.0875296108250924 100 0.04441875 1500 0.03930457 2.226957 9.429672 2 GM19239-INPUT_subsample-1e6.tagAlign.gz 2000000 235 0.0875296108250924 100 0.04441875 1500 0.03930457 2.226957 9.429672 2 GM19239-INPUT_subsample-1e6.tagAlign.gz 2000000 235 0.0875296108250924 100 0.04441875 1500 0.03930457 2.226957 9.429672 2 GM19239-INPUT_subsample-1e6.tagAlign.gz 2000000 235 0.0875411845578313 105 0.04458915 1500 0.03915072 2.236004 8.897877 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-INPUT_subsample-2.5e6.cc.plot.pdf

./GM19239-INPUT_subsample-2.5e6.cc.plot.pdf

./GM19239-INPUT_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-INPUT_subsample-2.5e6.tagAlign.gz 5000000 235 0.115320668241247 95 0.07404852 1500 0.07008097 1.645535 11.40245 2 GM19239-INPUT_subsample-2.5e6.tagAlign.gz 5000000 235 0.115320668241247 95 0.07404852 1500 0.07008097 1.645535 11.40245 2 GM19239-INPUT_subsample-2.5e6.tagAlign.gz 5000000 235 0.115320668241247 95 0.07404852 1500 0.07008097 1.645535 11.40245 2 GM19239-INPUT_subsample-2.5e6.tagAlign.gz 5000000 235 0.115320668241247 95 0.07404852 1500 0.07008097 1.645535 11.40245 2 GM19239-INPUT_subsample-2.5e6.tagAlign.gz 5000000 235 0.115320668241247 95 0.07404852 1500 0.07008097 1.645535 11.40245 2 GM19239-INPUT_subsample-2.5e6.tagAlign.gz 5000000 235 0.115416037417503 100 0.07418159 1500 0.07037331 1.640054 11.82756 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-INPUT_subsample-20e6.cc.plot.pdf

./GM19239-INPUT_subsample-20e6.cc.plot.pdf

./GM19239-INPUT_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-INPUT_subsample-20e6.tagAlign.gz 40000000 235 0.388483951868648 105 0.3587864 1500 0.3553246 1.093321 9.578537 2 GM19239-INPUT_subsample-20e6.tagAlign.gz 40000000 235 0.388483951868648 105 0.3587864 1500 0.3553246 1.093321 9.578537 2 GM19239-INPUT_subsample-20e6.tagAlign.gz 40000000 235 0.388483951868648 105 0.3587864 1500 0.3553246 1.093321 9.578537 2 GM19239-INPUT_subsample-20e6.tagAlign.gz 40000000 235 0.388483951868648 105 0.3587864 1500 0.3553246 1.093321 9.578537 2 GM19239-INPUT_subsample-20e6.tagAlign.gz 40000000 235 0.388509277808655 105 0.3588219 1500 0.3553408 1.093343 9.528097 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-INPUT_subsample-25e6.cc.plot.pdf

./GM19239-INPUT_subsample-25e6.cc.plot.pdf

./GM19239-INPUT_subsample-25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-INPUT_subsample-25e6.tagAlign.gz 50000000 235 0.438328450398854 105 0.4108143 1500 0.4070146 1.076935 8.241126 2 GM19239-INPUT_subsample-25e6.tagAlign.gz 50000000 235 0.438328450398854 105 0.4108143 1500 0.4070146 1.076935 8.241126 2 GM19239-INPUT_subsample-25e6.tagAlign.gz 50000000 235 0.438328450398854 105 0.4108143 1500 0.4070146 1.076935 8.241126 2 GM19239-INPUT_subsample-25e6.tagAlign.gz 50000000 235 0.438328450398854 105 0.4108143 1500 0.4070146 1.076935 8.241126 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-INPUT_subsample-30e6.cc.plot.pdf

./GM19239-INPUT_subsample-30e6.cc.plot.pdf

./GM19239-INPUT_subsample-30e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-INPUT_subsample-30e6.tagAlign.gz 60000000 235 0.480527870042867 105 0.4548682 1500 0.4507559 1.066049 7.239641 2 GM19239-INPUT_subsample-30e6.tagAlign.gz 60000000 235 0.480526581453883 105 0.454937 1500 0.4508102 1.065918 7.200913 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-INPUT_subsample-40e6.cc.plot.pdf

./GM19239-INPUT_subsample-40e6.cc.plot.pdf

./GM19239-INPUT_subsample-40e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-INPUT_subsample-40e6.tagAlign.gz 80000000 235 0.548230412348164 105 0.5254963 1500 0.5208935 1.052481 5.939177 2 GM19239-INPUT_subsample-40e6.tagAlign.gz 80000000 235 0.548230412348164 105 0.5254963 1500 0.5208935 1.052481 5.939177 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-INPUT_subsample-5e6.cc.plot.pdf

./GM19239-INPUT_subsample-5e6.cc.plot.pdf

./GM19239-INPUT_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-INPUT_subsample-5e6.tagAlign.gz 10000000 235 0.164491134349463 105 0.1251404 1500 0.1223829 1.344069 15.27075 2 GM19239-INPUT_subsample-5e6.tagAlign.gz 10000000 235 0.164168625080427 95 0.125059 1500 0.1223313 1.342 15.33818 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-INPUT_subsample-7.5e6.cc.plot.pdf

./GM19239-INPUT_subsample-7.5e6.cc.plot.pdf

./GM19239-INPUT_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-INPUT_subsample-7.5e6.tagAlign.gz 15000000 235 0.212208355070264 105 0.1750693 1500 0.1726215 1.229328 16.1725 2 GM19239-INPUT_subsample-7.5e6.tagAlign.gz 15000000 235 0.212297149842985 105 0.1751703 1500 0.1725771 1.230158 15.31684 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM2610-INPUT_merged.cc.plot.pdf

./GM2610-INPUT_merged.cc.plot.pdf

./GM2610-INPUT_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM2610-INPUT_merged.tagAlign.gz 58265328 215 0.474091807492841 105 0.4454626 1500 0.4415457 1.07371 8.308975 2 GM2610-INPUT_merged.tagAlign.gz 58265328 215 0.474091807492841 105 0.4454626 1500 0.4415457 1.07371 8.308975 2 GM2610-INPUT_merged.tagAlign.gz 58265328 215 0.474091807492841 105 0.4454626 1500 0.4415457 1.07371 8.308975 2 GM2610-INPUT_merged.tagAlign.gz 58265328 215 0.474091807492841 105 0.4454626 1500 0.4415457 1.07371 8.308975 2 GM2610-INPUT_merged.tagAlign.gz 58265328 215 0.474091807492841 105 0.4454626 1500 0.4415457 1.07371 8.308975 2 GM2610-INPUT_merged.tagAlign.gz 58265328 215 0.474091807492841 105 0.4454626 1500 0.4415457 1.07371 8.308975 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM2610-INPUT_subsample-0.1e6.cc.plot.pdf

./GM2610-INPUT_subsample-0.1e6.cc.plot.pdf

./GM2610-INPUT_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM2610-INPUT_subsample-0.1e6.tagAlign.gz 200000 220 0.0548047858332083 100 0.006123954 1500 0.005254014 10.43103 56.95884 2 GM2610-INPUT_subsample-0.1e6.tagAlign.gz 200000 220 0.0548047858332083 100 0.006123954 1500 0.005254014 10.43103 56.95884 2 GM2610-INPUT_subsample-0.1e6.tagAlign.gz 200000 220 0.0548047858332083 100 0.006123954 1500 0.005254014 10.43103 56.95884 2 GM2610-INPUT_subsample-0.1e6.tagAlign.gz 200000 220 0.0548047858332083 100 0.006123954 1500 0.005254014 10.43103 56.95884 2 GM2610-INPUT_subsample-0.1e6.tagAlign.gz 200000 220 0.0548047858332083 100 0.006123954 1500 0.005254014 10.43103 56.95884 2 GM2610-INPUT_subsample-0.1e6.tagAlign.gz 200000 215 0.0545856664972995 105 0.006093975 1500 0.004861914 11.2272 40.35818 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM2610-INPUT_subsample-0.25e6.cc.plot.pdf

./GM2610-INPUT_subsample-0.25e6.cc.plot.pdf

./GM2610-INPUT_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM2610-INPUT_subsample-0.25e6.tagAlign.gz 500000 220 0.063511917467601 95 0.0137093 1500 0.01153447 5.50627 23.89955 2 GM2610-INPUT_subsample-0.25e6.tagAlign.gz 500000 220 0.063511917467601 95 0.0137093 1500 0.01153447 5.50627 23.89955 2 GM2610-INPUT_subsample-0.25e6.tagAlign.gz 500000 220 0.063511917467601 95 0.0137093 1500 0.01153447 5.50627 23.89955 2 GM2610-INPUT_subsample-0.25e6.tagAlign.gz 500000 220 0.063511917467601 95 0.0137093 1500 0.01153447 5.50627 23.89955 2 GM2610-INPUT_subsample-0.25e6.tagAlign.gz 500000 220 0.063511917467601 95 0.0137093 1500 0.01153447 5.50627 23.89955 2 GM2610-INPUT_subsample-0.25e6.tagAlign.gz 500000 220 0.0622986309393124 95 0.01379946 1500 0.01176283 5.296227 24.81346 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM2610-INPUT_subsample-0.5e6.cc.plot.pdf

./GM2610-INPUT_subsample-0.5e6.cc.plot.pdf

./GM2610-INPUT_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM2610-INPUT_subsample-0.5e6.tagAlign.gz 1000000 215 0.0751410427806356 100 0.02613499 1500 0.02205878 3.4064 13.02248 2 GM2610-INPUT_subsample-0.5e6.tagAlign.gz 1000000 215 0.0751410427806356 100 0.02613499 1500 0.02205878 3.4064 13.02248 2 GM2610-INPUT_subsample-0.5e6.tagAlign.gz 1000000 215 0.0751410427806356 100 0.02613499 1500 0.02205878 3.4064 13.02248 2 GM2610-INPUT_subsample-0.5e6.tagAlign.gz 1000000 215 0.0751410427806356 100 0.02613499 1500 0.02205878 3.4064 13.02248 2 GM2610-INPUT_subsample-0.5e6.tagAlign.gz 1000000 215 0.0751410427806356 100 0.02613499 1500 0.02205878 3.4064 13.02248 2 GM2610-INPUT_subsample-0.5e6.tagAlign.gz 1000000 215 0.0744241807268798 100 0.02637741 1500 0.02302925 3.231724 15.35019 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM2610-INPUT_subsample-10e6.cc.plot.pdf

./GM2610-INPUT_subsample-10e6.cc.plot.pdf

./GM2610-INPUT_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM2610-INPUT_subsample-10e6.tagAlign.gz 20000000 215 0.257955131099 105 0.2188532 1500 0.216211 1.193071 15.79887 2 GM2610-INPUT_subsample-10e6.tagAlign.gz 20000000 215 0.257955131099 105 0.2188532 1500 0.216211 1.193071 15.79887 2 GM2610-INPUT_subsample-10e6.tagAlign.gz 20000000 215 0.258010364404316 105 0.2187437 1500 0.2160592 1.194165 15.62678 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM2610-INPUT_subsample-1e6.cc.plot.pdf

./GM2610-INPUT_subsample-1e6.cc.plot.pdf

./GM2610-INPUT_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM2610-INPUT_subsample-1e6.tagAlign.gz 2000000 215 0.0944783315235904 100 0.04705405 1500 0.0410414 2.302025 8.887426 2 GM2610-INPUT_subsample-1e6.tagAlign.gz 2000000 215 0.0944783315235904 100 0.04705405 1500 0.0410414 2.302025 8.887426 2 GM2610-INPUT_subsample-1e6.tagAlign.gz 2000000 215 0.0944783315235904 100 0.04705405 1500 0.0410414 2.302025 8.887426 2 GM2610-INPUT_subsample-1e6.tagAlign.gz 2000000 215 0.0944783315235904 100 0.04705405 1500 0.0410414 2.302025 8.887426 2 GM2610-INPUT_subsample-1e6.tagAlign.gz 2000000 215 0.0944783315235904 100 0.04705405 1500 0.0410414 2.302025 8.887426 2 GM2610-INPUT_subsample-1e6.tagAlign.gz 2000000 215 0.0935925771359278 105 0.04669042 1500 0.04048294 2.311902 8.555738 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM2610-INPUT_subsample-2.5e6.cc.plot.pdf

./GM2610-INPUT_subsample-2.5e6.cc.plot.pdf

./GM2610-INPUT_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM2610-INPUT_subsample-2.5e6.tagAlign.gz 5000000 215 0.118455060401442 105 0.07257563 1500 0.0679656 1.742868 10.95207 2 GM2610-INPUT_subsample-2.5e6.tagAlign.gz 5000000 215 0.118455060401442 105 0.07257563 1500 0.0679656 1.742868 10.95207 2 GM2610-INPUT_subsample-2.5e6.tagAlign.gz 5000000 215 0.118455060401442 105 0.07257563 1500 0.0679656 1.742868 10.95207 2 GM2610-INPUT_subsample-2.5e6.tagAlign.gz 5000000 215 0.118455060401442 105 0.07257563 1500 0.0679656 1.742868 10.95207 2 GM2610-INPUT_subsample-2.5e6.tagAlign.gz 5000000 215 0.118455060401442 105 0.07257563 1500 0.0679656 1.742868 10.95207 2 GM2610-INPUT_subsample-2.5e6.tagAlign.gz 5000000 215 0.118218925190027 95 0.07290055 1500 0.06862245 1.722744 11.5931 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM2610-INPUT_subsample-20e6.cc.plot.pdf

./GM2610-INPUT_subsample-20e6.cc.plot.pdf

./GM2610-INPUT_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM2610-INPUT_subsample-20e6.tagAlign.gz 40000000 215 0.389283655658285 105 0.3565942 1500 0.3533089 1.101822 10.95032 2 GM2610-INPUT_subsample-20e6.tagAlign.gz 40000000 215 0.389283655658285 105 0.3565942 1500 0.3533089 1.101822 10.95032 2 GM2610-INPUT_subsample-20e6.tagAlign.gz 40000000 215 0.389331640894327 105 0.3566161 1500 0.3533383 1.101867 10.98104 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM2610-INPUT_subsample-5e6.cc.plot.pdf

./GM2610-INPUT_subsample-5e6.cc.plot.pdf

./GM2610-INPUT_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM2610-INPUT_subsample-5e6.tagAlign.gz 10000000 215 0.167921144036099 105 0.1246707 1500 0.1218284 1.378342 16.21674 2 GM2610-INPUT_subsample-5e6.tagAlign.gz 10000000 215 0.168125260977269 95 0.1244967 1500 0.1217034 1.381434 16.61946 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM2610-INPUT_subsample-7.5e6.cc.plot.pdf

./GM2610-INPUT_subsample-7.5e6.cc.plot.pdf

./GM2610-INPUT_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM2610-INPUT_subsample-7.5e6.tagAlign.gz 15000000 215 0.215477328369814 105 0.1743181 1500 0.171763 1.254503 17.10923 2 GM2610-INPUT_subsample-7.5e6.tagAlign.gz 15000000 215 0.215477328369814 105 0.1743181 1500 0.171763 1.254503 17.10923 2 GM2610-INPUT_subsample-7.5e6.tagAlign.gz 15000000 215 0.215539701612112 105 0.174333 1500 0.1717209 1.255175 16.77519 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E003-H3K27AC_merged.cc.plot.pdf

./E003-H3K27AC_merged.cc.plot.pdf

./E003-H3K27AC_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E003-H3K27AC_merged.tagAlign.gz 21493282 110 0.279568675962641 30 0.2620709 1500 0.228883 1.221448 1.527233 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E003-H3K27AC_subsample-0.1e6.cc.plot.pdf

./E003-H3K27AC_subsample-0.1e6.cc.plot.pdf

./E003-H3K27AC_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E003-H3K27AC_subsample-0.1e6.tagAlign.gz 199917 140 0.00381179981921015 30 0.003515894 1500 0.003105807 1.227314 1.721568 2 E003-H3K27AC_subsample-0.1e6.tagAlign.gz 199917 140 0.00381179981921015 30 0.003515894 1500 0.003105807 1.227314 1.721568 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E003-H3K27AC_subsample-0.25e6.cc.plot.pdf

./E003-H3K27AC_subsample-0.25e6.cc.plot.pdf

./E003-H3K27AC_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E003-H3K27AC_subsample-0.25e6.tagAlign.gz 499767 110 0.00935911379399558 30 0.008594488 1500 0.007421144 1.261142 1.651663 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E003-H3K27AC_subsample-0.5e6.cc.plot.pdf

./E003-H3K27AC_subsample-0.5e6.cc.plot.pdf

./E003-H3K27AC_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E003-H3K27AC_subsample-0.5e6.tagAlign.gz 999579 120 0.0181435485222975 30 0.01695649 1500 0.01485642 1.22126 1.565246 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E003-H3K27AC_subsample-10e6.cc.plot.pdf

./E003-H3K27AC_subsample-10e6.cc.plot.pdf

./E003-H3K27AC_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E003-H3K27AC_subsample-10e6.tagAlign.gz 19991334 110 0.265509057541261 30 0.248834 1500 0.2173102 1.221797 1.528967 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E003-H3K27AC_subsample-1e6.cc.plot.pdf

./E003-H3K27AC_subsample-1e6.cc.plot.pdf

./E003-H3K27AC_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E003-H3K27AC_subsample-1e6.tagAlign.gz 1999125 105 0.0354253654140574 30 0.03320492 1500 0.02920656 1.212925 1.555339 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E003-H3K27AC_subsample-2.5e6.cc.plot.pdf

./E003-H3K27AC_subsample-2.5e6.cc.plot.pdf

./E003-H3K27AC_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E003-H3K27AC_subsample-2.5e6.tagAlign.gz 4997900 110 0.0838055151601072 30 0.0787245 1500 0.06881462 1.217845 1.512723 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E003-H3K27AC_subsample-5e6.cc.plot.pdf

./E003-H3K27AC_subsample-5e6.cc.plot.pdf

./E003-H3K27AC_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E003-H3K27AC_subsample-5e6.tagAlign.gz 9995736 110 0.154417998443641 30 0.1446113 1500 0.1262747 1.222874 1.534813 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E003-H3K27AC_subsample-7.5e6.cc.plot.pdf

./E003-H3K27AC_subsample-7.5e6.cc.plot.pdf

./E003-H3K27AC_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E003-H3K27AC_subsample-7.5e6.tagAlign.gz 14993538 110 0.213995286466598 30 0.2006692 1500 0.1752659 1.220975 1.524579 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E003-H3K27ME3_merged.cc.plot.pdf

./E003-H3K27ME3_merged.cc.plot.pdf

./E003-H3K27ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E003-H3K27ME3_merged.tagAlign.gz 46394680 115 0.518332980744842 35 0.5001109 1500 0.4424551 1.171493 1.316048 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E003-H3K27ME3_subsample-0.1e6.cc.plot.pdf

./E003-H3K27ME3_subsample-0.1e6.cc.plot.pdf

./E003-H3K27ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E003-H3K27ME3_subsample-0.1e6.tagAlign.gz 199904 130 0.00507208715419453 35 0.004863403 1500 0.004066589 1.247258 1.261898 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E003-H3K27ME3_subsample-0.25e6.cc.plot.pdf

./E003-H3K27ME3_subsample-0.25e6.cc.plot.pdf

./E003-H3K27ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E003-H3K27ME3_subsample-0.25e6.tagAlign.gz 499741 125 0.0123298625197395 35 0.01206584 1500 0.0102225 1.206149 1.143232 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E003-H3K27ME3_subsample-0.5e6.cc.plot.pdf

./E003-H3K27ME3_subsample-0.5e6.cc.plot.pdf

./E003-H3K27ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E003-H3K27ME3_subsample-0.5e6.tagAlign.gz 999531 105 0.0240060820431014 35 0.02351876 1500 0.02046729 1.1729 1.1597 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E003-H3K27ME3_subsample-10e6.cc.plot.pdf

./E003-H3K27ME3_subsample-10e6.cc.plot.pdf

./E003-H3K27ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E003-H3K27ME3_subsample-10e6.tagAlign.gz 19989237 115 0.323122638806454 35 0.3140339 1500 0.2752328 1.173998 1.234241 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E003-H3K27ME3_subsample-1e6.cc.plot.pdf

./E003-H3K27ME3_subsample-1e6.cc.plot.pdf

./E003-H3K27ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E003-H3K27ME3_subsample-1e6.tagAlign.gz 1998884 100 0.0468242805810337 35 0.04565376 1500 0.03989915 1.173566 1.203406 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E003-H3K27ME3_subsample-2.5e6.cc.plot.pdf

./E003-H3K27ME3_subsample-2.5e6.cc.plot.pdf

./E003-H3K27ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E003-H3K27ME3_subsample-2.5e6.tagAlign.gz 4997354 115 0.108882673901567 35 0.1060694 1500 0.09255668 1.176389 1.208195 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E003-H3K27ME3_subsample-20e6.cc.plot.pdf

./E003-H3K27ME3_subsample-20e6.cc.plot.pdf

./E003-H3K27ME3_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E003-H3K27ME3_subsample-20e6.tagAlign.gz 39978506 115 0.482783996916363 35 0.466301 1500 0.4118836 1.172137 1.302899 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E003-H3K27ME3_subsample-5e6.cc.plot.pdf

./E003-H3K27ME3_subsample-5e6.cc.plot.pdf

./E003-H3K27ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E003-H3K27ME3_subsample-5e6.tagAlign.gz 9994552 115 0.195126051546501 35 0.1901039 1500 0.165709 1.177523 1.205868 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E003-H3K27ME3_subsample-7.5e6.cc.plot.pdf

./E003-H3K27ME3_subsample-7.5e6.cc.plot.pdf

./E003-H3K27ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E003-H3K27ME3_subsample-7.5e6.tagAlign.gz 14991899 115 0.265262077609422 35 0.2581856 1500 0.2255451 1.176093 1.216802 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E003-H3K36ME3_merged.cc.plot.pdf

./E003-H3K36ME3_merged.cc.plot.pdf

./E003-H3K36ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E003-H3K36ME3_merged.tagAlign.gz 69520096 100 0.506681108541679 35 0.5076679 1500 0.4845614 1.045649 0.9572939 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E003-H3K36ME3_subsample-0.1e6.cc.plot.pdf

./E003-H3K36ME3_subsample-0.1e6.cc.plot.pdf

./E003-H3K36ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E003-H3K36ME3_subsample-0.1e6.tagAlign.gz 199968 160 0.00339895509960643 35 0.003324919 1500 0.003221263 1.055162 1.71424 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E003-H3K36ME3_subsample-0.25e6.cc.plot.pdf

./E003-H3K36ME3_subsample-0.25e6.cc.plot.pdf

./E003-H3K36ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E003-H3K36ME3_subsample-0.25e6.tagAlign.gz 499912 55 0.00802396961232534 40 0.008071581 1500 0.00757201 1.059688 0.904695 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E003-H3K36ME3_subsample-0.5e6.cc.plot.pdf

./E003-H3K36ME3_subsample-0.5e6.cc.plot.pdf

./E003-H3K36ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E003-H3K36ME3_subsample-0.5e6.tagAlign.gz 999801 95 0.0157763230973861 35 0.01598985 1500 0.01499227 1.052297 0.7859585 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E003-H3K36ME3_subsample-10e6.cc.plot.pdf

./E003-H3K36ME3_subsample-10e6.cc.plot.pdf

./E003-H3K36ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E003-H3K36ME3_subsample-10e6.tagAlign.gz 19996336 100 0.237010301294696 35 0.2405707 1500 0.2258745 1.049301 0.757732 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E003-H3K36ME3_subsample-1e6.cc.plot.pdf

./E003-H3K36ME3_subsample-1e6.cc.plot.pdf

./E003-H3K36ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E003-H3K36ME3_subsample-1e6.tagAlign.gz 1999639 95 0.0309759186466681 35 0.03159895 1500 0.02948105 1.050706 0.7058269 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E003-H3K36ME3_subsample-2.5e6.cc.plot.pdf

./E003-H3K36ME3_subsample-2.5e6.cc.plot.pdf

./E003-H3K36ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E003-H3K36ME3_subsample-2.5e6.tagAlign.gz 4999075 100 0.0736826831343803 35 0.07483531 1500 0.07004616 1.051916 0.7593257 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E003-H3K36ME3_subsample-20e6.cc.plot.pdf

./E003-H3K36ME3_subsample-20e6.cc.plot.pdf

./E003-H3K36ME3_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E003-H3K36ME3_subsample-20e6.tagAlign.gz 39992463 100 0.377388866846391 35 0.3799827 1500 0.3606336 1.046461 0.8659439 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E003-H3K36ME3_subsample-30e6.cc.plot.pdf

./E003-H3K36ME3_subsample-30e6.cc.plot.pdf

./E003-H3K36ME3_subsample-30e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E003-H3K36ME3_subsample-30e6.tagAlign.gz 59988834 100 0.471794122159547 35 0.473153 1500 0.4511188 1.045831 0.9383288 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E003-H3K36ME3_subsample-5e6.cc.plot.pdf

./E003-H3K36ME3_subsample-5e6.cc.plot.pdf

./E003-H3K36ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E003-H3K36ME3_subsample-5e6.tagAlign.gz 9998105 95 0.136088288384794 35 0.1384267 1500 0.1297081 1.049189 0.7317889 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E003-H3K36ME3_subsample-7.5e6.cc.plot.pdf

./E003-H3K36ME3_subsample-7.5e6.cc.plot.pdf

./E003-H3K36ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E003-H3K36ME3_subsample-7.5e6.tagAlign.gz 14997250 100 0.190116030887661 35 0.1931206 1500 0.1811667 1.049398 0.7486558 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E003-H3K4ME1_merged.cc.plot.pdf

./E003-H3K4ME1_merged.cc.plot.pdf

./E003-H3K4ME1_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E003-H3K4ME1_merged.tagAlign.gz 55070168 145 0.452658481122222 35 0.448323 1500 0.4226374 1.071033 1.16879 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E003-H3K4ME1_subsample-0.1e6.cc.plot.pdf

./E003-H3K4ME1_subsample-0.1e6.cc.plot.pdf

./E003-H3K4ME1_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E003-H3K4ME1_subsample-0.1e6.tagAlign.gz 199982 -35 0.00337043320044251 35 0.003175599 1500 0.003075763 1.095804 2.95154 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E003-H3K4ME1_subsample-0.25e6.cc.plot.pdf

./E003-H3K4ME1_subsample-0.25e6.cc.plot.pdf

./E003-H3K4ME1_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E003-H3K4ME1_subsample-0.25e6.tagAlign.gz 499951 180 0.00777003321577465 35 0.007721839 1500 0.007173221 1.0832 1.087846 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E003-H3K4ME1_subsample-0.5e6.cc.plot.pdf

./E003-H3K4ME1_subsample-0.5e6.cc.plot.pdf

./E003-H3K4ME1_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E003-H3K4ME1_subsample-0.5e6.tagAlign.gz 999912 110 0.0153810174989373 30 0.01536353 1500 0.01416257 1.086033 1.014562 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E003-H3K4ME1_subsample-10e6.cc.plot.pdf

./E003-H3K4ME1_subsample-10e6.cc.plot.pdf

./E003-H3K4ME1_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E003-H3K4ME1_subsample-10e6.tagAlign.gz 19998181 150 0.234348348987953 35 0.2334141 1500 0.2184435 1.07281 1.062404 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E003-H3K4ME1_subsample-1e6.cc.plot.pdf

./E003-H3K4ME1_subsample-1e6.cc.plot.pdf

./E003-H3K4ME1_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E003-H3K4ME1_subsample-1e6.tagAlign.gz 1999827 155 0.0301445641673271 35 0.03005781 1500 0.02801774 1.07591 1.042526 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E003-H3K4ME1_subsample-2.5e6.cc.plot.pdf

./E003-H3K4ME1_subsample-2.5e6.cc.plot.pdf

./E003-H3K4ME1_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E003-H3K4ME1_subsample-2.5e6.tagAlign.gz 4999507 155 0.0719172133852007 35 0.07154959 1500 0.06687727 1.075361 1.07868 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E003-H3K4ME1_subsample-20e6.cc.plot.pdf

./E003-H3K4ME1_subsample-20e6.cc.plot.pdf

./E003-H3K4ME1_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E003-H3K4ME1_subsample-20e6.tagAlign.gz 39996356 150 0.376851548094824 35 0.3739865 1500 0.3517892 1.071243 1.129072 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E003-H3K4ME1_subsample-5e6.cc.plot.pdf

./E003-H3K4ME1_subsample-5e6.cc.plot.pdf

./E003-H3K4ME1_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E003-H3K4ME1_subsample-5e6.tagAlign.gz 9999108 145 0.133540743077674 35 0.133064 1500 0.1244127 1.073369 1.055113 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E003-H3K4ME1_subsample-7.5e6.cc.plot.pdf

./E003-H3K4ME1_subsample-7.5e6.cc.plot.pdf

./E003-H3K4ME1_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E003-H3K4ME1_subsample-7.5e6.tagAlign.gz 14998640 145 0.187246448383276 35 0.1865241 1500 0.1745127 1.072967 1.060143 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E003-H3K4ME3_merged.cc.plot.pdf

./E003-H3K4ME3_merged.cc.plot.pdf

./E003-H3K4ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E003-H3K4ME3_merged.tagAlign.gz 46512598 130 0.678656668270351 40 0.6147381 1500 0.3078049 2.204827 1.208249 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E003-H3K4ME3_subsample-0.25e6.cc.plot.pdf

./E003-H3K4ME3_subsample-0.25e6.cc.plot.pdf

./E003-H3K4ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E003-H3K4ME3_subsample-0.25e6.tagAlign.gz 499903 120 0.0244552903995752 35 0.02178102 1500 0.01102834 2.217495 1.248708 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E003-H3K4ME3_subsample-0.5e6.cc.plot.pdf

./E003-H3K4ME3_subsample-0.5e6.cc.plot.pdf

./E003-H3K4ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E003-H3K4ME3_subsample-0.5e6.tagAlign.gz 999788 135 0.0471641774071005 40 0.04253035 1500 0.02114788 2.230208 1.216711 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E003-H3K4ME3_subsample-10e6.cc.plot.pdf

./E003-H3K4ME3_subsample-10e6.cc.plot.pdf

./E003-H3K4ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E003-H3K4ME3_subsample-10e6.tagAlign.gz 19995968 130 0.486859464465245 40 0.4401394 1500 0.2193346 2.219711 1.21159 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E003-H3K4ME3_subsample-1e6.cc.plot.pdf

./E003-H3K4ME3_subsample-1e6.cc.plot.pdf

./E003-H3K4ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E003-H3K4ME3_subsample-1e6.tagAlign.gz 1999599 135 0.0895884721610507 40 0.08096374 1500 0.04046688 2.213872 1.212973 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E003-H3K4ME3_subsample-2.5e6.cc.plot.pdf

./E003-H3K4ME3_subsample-2.5e6.cc.plot.pdf

./E003-H3K4ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E003-H3K4ME3_subsample-2.5e6.tagAlign.gz 4998938 130 0.196017369227452 40 0.1778317 1500 0.0883886 2.217677 1.203321 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E003-H3K4ME3_subsample-20e6.cc.plot.pdf

./E003-H3K4ME3_subsample-20e6.cc.plot.pdf

./E003-H3K4ME3_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E003-H3K4ME3_subsample-20e6.tagAlign.gz 39991905 135 0.647941130898018 40 0.5857705 1500 0.2928412 2.212602 1.212238 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E003-H3K4ME3_subsample-5e6.cc.plot.pdf

./E003-H3K4ME3_subsample-5e6.cc.plot.pdf

./E003-H3K4ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E003-H3K4ME3_subsample-5e6.tagAlign.gz 9998019 135 0.325546032868972 40 0.2940364 1500 0.1467302 2.21867 1.213906 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E003-H3K4ME3_subsample-7.5e6.cc.plot.pdf

./E003-H3K4ME3_subsample-7.5e6.cc.plot.pdf

./E003-H3K4ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E003-H3K4ME3_subsample-7.5e6.tagAlign.gz 14996975 135 0.417583081540455 40 0.3775672 1500 0.1880984 2.220024 1.2112 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E003-H3K9ME3_merged.cc.plot.pdf

./E003-H3K9ME3_merged.cc.plot.pdf

./E003-H3K9ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E003-H3K9ME3_merged.tagAlign.gz 82693795 100 0.511050944075885 30 0.5198862 1500 0.4846458 1.054483 0.7492857 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E003-H3K9ME3_subsample-0.1e6.cc.plot.pdf

./E003-H3K9ME3_subsample-0.1e6.cc.plot.pdf

./E003-H3K9ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E003-H3K9ME3_subsample-0.1e6.tagAlign.gz 199946 -15 0.00631932080949404 30 0.02733772 1500 0.003878542 1.629303 0.1040437 -2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E003-H3K9ME3_subsample-0.25e6.cc.plot.pdf

./E003-H3K9ME3_subsample-0.25e6.cc.plot.pdf

./E003-H3K9ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E003-H3K9ME3_subsample-0.25e6.tagAlign.gz 499845 70 0.0116900838709094 30 0.04129398 1500 0.008950144 1.306134 0.08471288 -2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E003-H3K9ME3_subsample-0.5e6.cc.plot.pdf

./E003-H3K9ME3_subsample-0.5e6.cc.plot.pdf

./E003-H3K9ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E003-H3K9ME3_subsample-0.5e6.tagAlign.gz 999667 85 0.0202018763037658 30 0.05145735 1500 0.01680946 1.201816 0.09791116 -2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E003-H3K9ME3_subsample-10e6.cc.plot.pdf

./E003-H3K9ME3_subsample-10e6.cc.plot.pdf

./E003-H3K9ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E003-H3K9ME3_subsample-10e6.tagAlign.gz 19993635 100 0.225106330228091 30 0.2492572 1500 0.2116581 1.063538 0.3576748 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E003-H3K9ME3_subsample-1e6.cc.plot.pdf

./E003-H3K9ME3_subsample-1e6.cc.plot.pdf

./E003-H3K9ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E003-H3K9ME3_subsample-1e6.tagAlign.gz 1999385 70 0.0354475680595007 30 0.06875803 1500 0.03134527 1.130875 0.1096497 -2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E003-H3K9ME3_subsample-2.5e6.cc.plot.pdf

./E003-H3K9ME3_subsample-2.5e6.cc.plot.pdf

./E003-H3K9ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E003-H3K9ME3_subsample-2.5e6.tagAlign.gz 4998416 95 0.0759034383144369 30 0.1069226 1500 0.06973665 1.08843 0.1658365 -2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E003-H3K9ME3_subsample-20e6.cc.plot.pdf

./E003-H3K9ME3_subsample-20e6.cc.plot.pdf

./E003-H3K9ME3_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E003-H3K9ME3_subsample-20e6.tagAlign.gz 39987401 100 0.353414218520327 30 0.3700443 1500 0.3340805 1.057871 0.5375888 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E003-H3K9ME3_subsample-30e6.cc.plot.pdf

./E003-H3K9ME3_subsample-30e6.cc.plot.pdf

./E003-H3K9ME3_subsample-30e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E003-H3K9ME3_subsample-30e6.tagAlign.gz 59981140 100 0.440476648293921 30 0.4528698 1500 0.4170835 1.056087 0.6536898 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E003-H3K9ME3_subsample-5e6.cc.plot.pdf

./E003-H3K9ME3_subsample-5e6.cc.plot.pdf

./E003-H3K9ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E003-H3K9ME3_subsample-5e6.tagAlign.gz 9996765 100 0.133061632940044 30 0.1618924 1500 0.1242674 1.070769 0.233735 -2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E003-H3K9ME3_subsample-7.5e6.cc.plot.pdf

./E003-H3K9ME3_subsample-7.5e6.cc.plot.pdf

./E003-H3K9ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E003-H3K9ME3_subsample-7.5e6.tagAlign.gz 14995232 100 0.182493136788228 30 0.2092006 1500 0.1709598 1.067462 0.3015971 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E006-H3K27AC_merged.cc.plot.pdf

./E006-H3K27AC_merged.cc.plot.pdf

./E006-H3K27AC_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E006-H3K27AC_merged.tagAlign.gz 92668965 130 0.622963749712776 35 0.5996588 1500 0.5279978 1.17986 1.325212 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E006-H3K27AC_subsample-0.1e6.cc.plot.pdf

./E006-H3K27AC_subsample-0.1e6.cc.plot.pdf

./E006-H3K27AC_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E006-H3K27AC_subsample-0.1e6.tagAlign.gz 199928 165 0.00374392812305071 35 0.003509112 1500 0.003262172 1.14768 1.950899 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E006-H3K27AC_subsample-0.25e6.cc.plot.pdf

./E006-H3K27AC_subsample-0.25e6.cc.plot.pdf

./E006-H3K27AC_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E006-H3K27AC_subsample-0.25e6.tagAlign.gz 499846 130 0.00898686701884388 35 0.008804589 1500 0.007560188 1.188709 1.146479 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E006-H3K27AC_subsample-0.5e6.cc.plot.pdf

./E006-H3K27AC_subsample-0.5e6.cc.plot.pdf

./E006-H3K27AC_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E006-H3K27AC_subsample-0.5e6.tagAlign.gz 999635 125 0.0177546007274955 35 0.0169902 1500 0.01487386 1.193678 1.361193 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E006-H3K27AC_subsample-10e6.cc.plot.pdf

./E006-H3K27AC_subsample-10e6.cc.plot.pdf

./E006-H3K27AC_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E006-H3K27AC_subsample-10e6.tagAlign.gz 19993104 135 0.263273429291733 35 0.2534351 1500 0.2232645 1.1792 1.326092 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E006-H3K27AC_subsample-1e6.cc.plot.pdf

./E006-H3K27AC_subsample-1e6.cc.plot.pdf

./E006-H3K27AC_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E006-H3K27AC_subsample-1e6.tagAlign.gz 1999288 110 0.03456964436499 35 0.03335276 1500 0.02935683 1.177567 1.304532 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E006-H3K27AC_subsample-2.5e6.cc.plot.pdf

./E006-H3K27AC_subsample-2.5e6.cc.plot.pdf

./E006-H3K27AC_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E006-H3K27AC_subsample-2.5e6.tagAlign.gz 4998307 130 0.0822366062588842 35 0.07904054 1500 0.06963158 1.181024 1.339683 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E006-H3K27AC_subsample-20e6.cc.plot.pdf

./E006-H3K27AC_subsample-20e6.cc.plot.pdf

./E006-H3K27AC_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E006-H3K27AC_subsample-20e6.tagAlign.gz 39986053 130 0.416288994759227 35 0.4007702 1500 0.3529167 1.179567 1.324298 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E006-H3K27AC_subsample-5e6.cc.plot.pdf

./E006-H3K27AC_subsample-5e6.cc.plot.pdf

./E006-H3K27AC_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E006-H3K27AC_subsample-5e6.tagAlign.gz 9996530 130 0.151979072172326 35 0.1462119 1500 0.1286043 1.181757 1.327541 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E006-H3K27AC_subsample-7.5e6.cc.plot.pdf

./E006-H3K27AC_subsample-7.5e6.cc.plot.pdf

./E006-H3K27AC_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E006-H3K27AC_subsample-7.5e6.tagAlign.gz 14994939 130 0.211561784648435 35 0.2034517 1500 0.1792361 1.180353 1.33491 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E006-H3K27ME3_merged.cc.plot.pdf

./E006-H3K27ME3_merged.cc.plot.pdf

./E006-H3K27ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E006-H3K27ME3_merged.tagAlign.gz 110654982 120 0.620312930323165 35 0.6144029 1500 0.5962487 1.040359 1.325543 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E006-H3K27ME3_subsample-0.1e6.cc.plot.pdf

./E006-H3K27ME3_subsample-0.1e6.cc.plot.pdf

./E006-H3K27ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E006-H3K27ME3_subsample-0.1e6.tagAlign.gz 199934 90 0.00327258102472273 30 0.003212995 1500 0.003125418 1.047086 1.680391 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E006-H3K27ME3_subsample-0.25e6.cc.plot.pdf

./E006-H3K27ME3_subsample-0.25e6.cc.plot.pdf

./E006-H3K27ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E006-H3K27ME3_subsample-0.25e6.tagAlign.gz 499866 150 0.00752344515813346 40 0.007372527 1500 0.007186701 1.046857 1.812145 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E006-H3K27ME3_subsample-0.5e6.cc.plot.pdf

./E006-H3K27ME3_subsample-0.5e6.cc.plot.pdf

./E006-H3K27ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E006-H3K27ME3_subsample-0.5e6.tagAlign.gz 999691 135 0.0148114879151582 35 0.0146226 1500 0.0141082 1.049849 1.367194 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E006-H3K27ME3_subsample-10e6.cc.plot.pdf

./E006-H3K27ME3_subsample-10e6.cc.plot.pdf

./E006-H3K27ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E006-H3K27ME3_subsample-10e6.tagAlign.gz 19993956 115 0.229824134315871 35 0.2276611 1500 0.2210085 1.039888 1.325142 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E006-H3K27ME3_subsample-1e6.cc.plot.pdf

./E006-H3K27ME3_subsample-1e6.cc.plot.pdf

./E006-H3K27ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E006-H3K27ME3_subsample-1e6.tagAlign.gz 1999378 125 0.0291094713264394 30 0.02874033 1500 0.02796211 1.041033 1.474334 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E006-H3K27ME3_subsample-2.5e6.cc.plot.pdf

./E006-H3K27ME3_subsample-2.5e6.cc.plot.pdf

./E006-H3K27ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E006-H3K27ME3_subsample-2.5e6.tagAlign.gz 4998464 120 0.0697280541680349 35 0.06901379 1500 0.06703714 1.040141 1.361348 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E006-H3K27ME3_subsample-20e6.cc.plot.pdf

./E006-H3K27ME3_subsample-20e6.cc.plot.pdf

./E006-H3K27ME3_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E006-H3K27ME3_subsample-20e6.tagAlign.gz 39987804 120 0.372897406522304 35 0.3693246 1500 0.3584849 1.040204 1.329599 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E006-H3K27ME3_subsample-5e6.cc.plot.pdf

./E006-H3K27ME3_subsample-5e6.cc.plot.pdf

./E006-H3K27ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E006-H3K27ME3_subsample-5e6.tagAlign.gz 9996979 120 0.13011715296 35 0.128874 1500 0.1250935 1.040159 1.328819 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E006-H3K27ME3_subsample-7.5e6.cc.plot.pdf

./E006-H3K27ME3_subsample-7.5e6.cc.plot.pdf

./E006-H3K27ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E006-H3K27ME3_subsample-7.5e6.tagAlign.gz 14995400 105 0.183088763300556 35 0.1811787 1500 0.1759745 1.040428 1.367021 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E006-H3K36ME3_merged.cc.plot.pdf

./E006-H3K36ME3_merged.cc.plot.pdf

./E006-H3K36ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E006-H3K36ME3_merged.tagAlign.gz 46020286 115 0.444736786092509 35 0.4310774 1500 0.3971012 1.119958 1.402031 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E006-H3K36ME3_subsample-0.1e6.cc.plot.pdf

./E006-H3K36ME3_subsample-0.1e6.cc.plot.pdf

./E006-H3K36ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E006-H3K36ME3_subsample-0.1e6.tagAlign.gz 199933 160 0.00391627206482358 35 0.003637722 1500 0.003455748 1.133263 2.530705 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E006-H3K36ME3_subsample-0.25e6.cc.plot.pdf

./E006-H3K36ME3_subsample-0.25e6.cc.plot.pdf

./E006-H3K36ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E006-H3K36ME3_subsample-0.25e6.tagAlign.gz 499853 130 0.00929228660878617 35 0.008903865 1500 0.008052834 1.153915 1.456412 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E006-H3K36ME3_subsample-0.5e6.cc.plot.pdf

./E006-H3K36ME3_subsample-0.5e6.cc.plot.pdf

./E006-H3K36ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E006-H3K36ME3_subsample-0.5e6.tagAlign.gz 999670 120 0.0184062664460901 35 0.0177288 1500 0.01624678 1.132918 1.457129 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E006-H3K36ME3_subsample-10e6.cc.plot.pdf

./E006-H3K36ME3_subsample-10e6.cc.plot.pdf

./E006-H3K36ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E006-H3K36ME3_subsample-10e6.tagAlign.gz 19993529 115 0.263576323560137 35 0.255478 1500 0.2356848 1.118342 1.409149 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E006-H3K36ME3_subsample-1e6.cc.plot.pdf

./E006-H3K36ME3_subsample-1e6.cc.plot.pdf

./E006-H3K36ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E006-H3K36ME3_subsample-1e6.tagAlign.gz 1999347 115 0.035780523237163 40 0.03462061 1500 0.03199879 1.118184 1.442407 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E006-H3K36ME3_subsample-2.5e6.cc.plot.pdf

./E006-H3K36ME3_subsample-2.5e6.cc.plot.pdf

./E006-H3K36ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E006-H3K36ME3_subsample-2.5e6.tagAlign.gz 4998451 110 0.0841471610611992 35 0.08163548 1500 0.07529131 1.117621 1.395904 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E006-H3K36ME3_subsample-20e6.cc.plot.pdf

./E006-H3K36ME3_subsample-20e6.cc.plot.pdf

./E006-H3K36ME3_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E006-H3K36ME3_subsample-20e6.tagAlign.gz 39986999 115 0.411723981105222 35 0.3990524 1500 0.3677027 1.11972 1.4042 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E006-H3K36ME3_subsample-5e6.cc.plot.pdf

./E006-H3K36ME3_subsample-5e6.cc.plot.pdf

./E006-H3K36ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E006-H3K36ME3_subsample-5e6.tagAlign.gz 9996776 125 0.153752124959402 35 0.1490503 1500 0.1375371 1.117896 1.408382 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E006-H3K36ME3_subsample-7.5e6.cc.plot.pdf

./E006-H3K36ME3_subsample-7.5e6.cc.plot.pdf

./E006-H3K36ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E006-H3K36ME3_subsample-7.5e6.tagAlign.gz 14995243 115 0.21284087870271 35 0.2064785 1500 0.1903173 1.118347 1.393681 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E006-H3K4ME1_merged.cc.plot.pdf

./E006-H3K4ME1_merged.cc.plot.pdf

./E006-H3K4ME1_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E006-H3K4ME1_merged.tagAlign.gz 43407657 110 0.432614283575632 40 0.4103157 1500 0.3743251 1.155718 1.619569 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E006-H3K4ME1_subsample-0.1e6.cc.plot.pdf

./E006-H3K4ME1_subsample-0.1e6.cc.plot.pdf

./E006-H3K4ME1_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E006-H3K4ME1_subsample-0.1e6.tagAlign.gz 199944 90 0.00371905570379024 35 0.003585467 1500 0.003310947 1.123261 1.486625 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E006-H3K4ME1_subsample-0.25e6.cc.plot.pdf

./E006-H3K4ME1_subsample-0.25e6.cc.plot.pdf

./E006-H3K4ME1_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E006-H3K4ME1_subsample-0.25e6.tagAlign.gz 499878 110 0.00911076131729632 30 0.008575187 1500 0.007733348 1.178114 1.636196 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E006-H3K4ME1_subsample-0.5e6.cc.plot.pdf

./E006-H3K4ME1_subsample-0.5e6.cc.plot.pdf

./E006-H3K4ME1_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E006-H3K4ME1_subsample-0.5e6.tagAlign.gz 999765 120 0.0178531450693955 40 0.01695461 1500 0.01550609 1.151363 1.620318 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E006-H3K4ME1_subsample-10e6.cc.plot.pdf

./E006-H3K4ME1_subsample-10e6.cc.plot.pdf

./E006-H3K4ME1_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E006-H3K4ME1_subsample-10e6.tagAlign.gz 19995298 115 0.262480095171762 40 0.2490763 1500 0.2273375 1.154583 1.616586 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E006-H3K4ME1_subsample-1e6.cc.plot.pdf

./E006-H3K4ME1_subsample-1e6.cc.plot.pdf

./E006-H3K4ME1_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E006-H3K4ME1_subsample-1e6.tagAlign.gz 1999547 105 0.0350444311395339 40 0.03312497 1500 0.03026347 1.157978 1.670787 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E006-H3K4ME1_subsample-2.5e6.cc.plot.pdf

./E006-H3K4ME1_subsample-2.5e6.cc.plot.pdf

./E006-H3K4ME1_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E006-H3K4ME1_subsample-2.5e6.tagAlign.gz 4998795 105 0.0826849353612853 35 0.07834536 1500 0.07168223 1.153493 1.651281 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E006-H3K4ME1_subsample-20e6.cc.plot.pdf

./E006-H3K4ME1_subsample-20e6.cc.plot.pdf

./E006-H3K4ME1_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E006-H3K4ME1_subsample-20e6.tagAlign.gz 39990621 110 0.412993024809955 40 0.3917186 1500 0.3574074 1.155525 1.620044 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E006-H3K4ME1_subsample-5e6.cc.plot.pdf

./E006-H3K4ME1_subsample-5e6.cc.plot.pdf

./E006-H3K4ME1_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E006-H3K4ME1_subsample-5e6.tagAlign.gz 9997695 110 0.152075916990781 40 0.144424 1500 0.1318216 1.153649 1.607174 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E006-H3K4ME1_subsample-7.5e6.cc.plot.pdf

./E006-H3K4ME1_subsample-7.5e6.cc.plot.pdf

./E006-H3K4ME1_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E006-H3K4ME1_subsample-7.5e6.tagAlign.gz 14996454 110 0.211286613210547 40 0.2005124 1500 0.1830707 1.154126 1.617724 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E006-H3K4ME3_merged.cc.plot.pdf

./E006-H3K4ME3_merged.cc.plot.pdf

./E006-H3K4ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E006-H3K4ME3_merged.tagAlign.gz 20669858 110 0.391765650711416 40 0.3595561 1500 0.2039327 1.921053 1.206971 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E006-H3K4ME3_subsample-0.1e6.cc.plot.pdf

./E006-H3K4ME3_subsample-0.1e6.cc.plot.pdf

./E006-H3K4ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E006-H3K4ME3_subsample-0.1e6.tagAlign.gz 199917 120 0.00661666174197368 40 0.005721972 1500 0.003356255 1.971442 1.37819 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E006-H3K4ME3_subsample-0.25e6.cc.plot.pdf

./E006-H3K4ME3_subsample-0.25e6.cc.plot.pdf

./E006-H3K4ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E006-H3K4ME3_subsample-0.25e6.tagAlign.gz 499741 130 0.0154567543370239 40 0.01402174 1500 0.007929476 1.949278 1.235547 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E006-H3K4ME3_subsample-0.5e6.cc.plot.pdf

./E006-H3K4ME3_subsample-0.5e6.cc.plot.pdf

./E006-H3K4ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E006-H3K4ME3_subsample-0.5e6.tagAlign.gz 999507 105 0.0302269718513497 35 0.02795921 1500 0.01591318 1.899493 1.188258 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E006-H3K4ME3_subsample-10e6.cc.plot.pdf

./E006-H3K4ME3_subsample-10e6.cc.plot.pdf

./E006-H3K4ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E006-H3K4ME3_subsample-10e6.tagAlign.gz 19989946 110 0.383752280774703 40 0.3521669 1500 0.1997833 1.920843 1.207276 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E006-H3K4ME3_subsample-1e6.cc.plot.pdf

./E006-H3K4ME3_subsample-1e6.cc.plot.pdf

./E006-H3K4ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E006-H3K4ME3_subsample-1e6.tagAlign.gz 1998994 110 0.0586613731939677 40 0.05360726 1500 0.0306298 1.915173 1.21996 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E006-H3K4ME3_subsample-2.5e6.cc.plot.pdf

./E006-H3K4ME3_subsample-2.5e6.cc.plot.pdf

./E006-H3K4ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E006-H3K4ME3_subsample-2.5e6.tagAlign.gz 4997428 115 0.134362638723777 40 0.1233119 1500 0.0701793 1.914562 1.207983 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E006-H3K4ME3_subsample-5e6.cc.plot.pdf

./E006-H3K4ME3_subsample-5e6.cc.plot.pdf

./E006-H3K4ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E006-H3K4ME3_subsample-5e6.tagAlign.gz 9994973 105 0.236861622141405 40 0.2175893 1500 0.123537 1.917333 1.20491 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E006-H3K4ME3_subsample-7.5e6.cc.plot.pdf

./E006-H3K4ME3_subsample-7.5e6.cc.plot.pdf

./E006-H3K4ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E006-H3K4ME3_subsample-7.5e6.tagAlign.gz 14992510 110 0.318063286650966 40 0.2919284 1500 0.1656885 1.919646 1.207025 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E006-H3K9ME3_merged.cc.plot.pdf

./E006-H3K9ME3_merged.cc.plot.pdf

./E006-H3K9ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E006-H3K9ME3_merged.tagAlign.gz 46886422 130 0.406345557474455 35 0.4210341 1500 0.3863007 1.051889 0.5771064 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E006-H3K9ME3_subsample-0.1e6.cc.plot.pdf

./E006-H3K9ME3_subsample-0.1e6.cc.plot.pdf

./E006-H3K9ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E006-H3K9ME3_subsample-0.1e6.tagAlign.gz 199902 -225 0.00329023249871441 35 0.003303572 1500 0.003158677 1.041649 0.9079342 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E006-H3K9ME3_subsample-0.25e6.cc.plot.pdf

./E006-H3K9ME3_subsample-0.25e6.cc.plot.pdf

./E006-H3K9ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E006-H3K9ME3_subsample-0.25e6.tagAlign.gz 499785 115 0.00771050250514535 35 0.007868865 1500 0.007184019 1.073285 0.7687622 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E006-H3K9ME3_subsample-0.5e6.cc.plot.pdf

./E006-H3K9ME3_subsample-0.5e6.cc.plot.pdf

./E006-H3K9ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E006-H3K9ME3_subsample-0.5e6.tagAlign.gz 999558 190 0.0150748063625636 35 0.01559809 1500 0.01420454 1.061267 0.624497 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E006-H3K9ME3_subsample-10e6.cc.plot.pdf

./E006-H3K9ME3_subsample-10e6.cc.plot.pdf

./E006-H3K9ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E006-H3K9ME3_subsample-10e6.tagAlign.gz 19990868 135 0.229955805261579 35 0.2384509 1500 0.2185223 1.052322 0.5737244 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E006-H3K9ME3_subsample-1e6.cc.plot.pdf

./E006-H3K9ME3_subsample-1e6.cc.plot.pdf

./E006-H3K9ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E006-H3K9ME3_subsample-1e6.tagAlign.gz 1999100 135 0.0295987932295632 35 0.03061126 1500 0.02809863 1.053389 0.5970498 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E006-H3K9ME3_subsample-2.5e6.cc.plot.pdf

./E006-H3K9ME3_subsample-2.5e6.cc.plot.pdf

./E006-H3K9ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E006-H3K9ME3_subsample-2.5e6.tagAlign.gz 4997693 125 0.070547066435585 35 0.07319499 1500 0.06689034 1.054667 0.5800051 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E006-H3K9ME3_subsample-20e6.cc.plot.pdf

./E006-H3K9ME3_subsample-20e6.cc.plot.pdf

./E006-H3K9ME3_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E006-H3K9ME3_subsample-20e6.tagAlign.gz 39981907 130 0.369817689432446 35 0.3833159 1500 0.3515718 1.051898 0.5747804 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E006-H3K9ME3_subsample-5e6.cc.plot.pdf

./E006-H3K9ME3_subsample-5e6.cc.plot.pdf

./E006-H3K9ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E006-H3K9ME3_subsample-5e6.tagAlign.gz 9995408 130 0.130958561319101 35 0.1359718 1500 0.1246618 1.050511 0.5567405 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E006-H3K9ME3_subsample-7.5e6.cc.plot.pdf

./E006-H3K9ME3_subsample-7.5e6.cc.plot.pdf

./E006-H3K9ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E006-H3K9ME3_subsample-7.5e6.tagAlign.gz 14993177 125 0.183663956617386 35 0.1904947 1500 0.1745656 1.05212 0.571179 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E017-H3K27AC_merged.cc.plot.pdf

./E017-H3K27AC_merged.cc.plot.pdf

./E017-H3K27AC_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E017-H3K27AC_merged.tagAlign.gz 42666551 130 0.652011443774695 40 0.5324345 1500 0.3350543 1.945987 1.60582 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E017-H3K27AC_subsample-0.1e6.cc.plot.pdf

./E017-H3K27AC_subsample-0.1e6.cc.plot.pdf

./E017-H3K27AC_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E017-H3K27AC_subsample-0.1e6.tagAlign.gz 199993 100 0.00931679474754336 30 0.007811167 1500 0.004809905 1.937002 1.501665 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E017-H3K27AC_subsample-0.25e6.cc.plot.pdf

./E017-H3K27AC_subsample-0.25e6.cc.plot.pdf

./E017-H3K27AC_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E017-H3K27AC_subsample-0.25e6.tagAlign.gz 499980 135 0.022962544683468 40 0.01833961 1500 0.01190624 1.928615 1.718586 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E017-H3K27AC_subsample-0.5e6.cc.plot.pdf

./E017-H3K27AC_subsample-0.5e6.cc.plot.pdf

./E017-H3K27AC_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E017-H3K27AC_subsample-0.5e6.tagAlign.gz 999954 135 0.0447887753114923 40 0.03662501 1500 0.02291982 1.95415 1.59567 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E017-H3K27AC_subsample-10e6.cc.plot.pdf

./E017-H3K27AC_subsample-10e6.cc.plot.pdf

./E017-H3K27AC_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E017-H3K27AC_subsample-10e6.tagAlign.gz 19999054 130 0.474546321098815 40 0.3877277 1500 0.2442088 1.943199 1.604928 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E017-H3K27AC_subsample-1e6.cc.plot.pdf

./E017-H3K27AC_subsample-1e6.cc.plot.pdf

./E017-H3K27AC_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E017-H3K27AC_subsample-1e6.tagAlign.gz 1999898 130 0.0849662782368831 40 0.06934663 1500 0.04380061 1.939843 1.611432 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E017-H3K27AC_subsample-2.5e6.cc.plot.pdf

./E017-H3K27AC_subsample-2.5e6.cc.plot.pdf

./E017-H3K27AC_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E017-H3K27AC_subsample-2.5e6.tagAlign.gz 4999776 130 0.187641075417027 40 0.1534521 1500 0.09678705 1.9387 1.603353 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E017-H3K27AC_subsample-20e6.cc.plot.pdf

./E017-H3K27AC_subsample-20e6.cc.plot.pdf

./E017-H3K27AC_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E017-H3K27AC_subsample-20e6.tagAlign.gz 39998074 130 0.637880910965115 40 0.520898 1500 0.3278742 1.945505 1.606054 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E017-H3K27AC_subsample-5e6.cc.plot.pdf

./E017-H3K27AC_subsample-5e6.cc.plot.pdf

./E017-H3K27AC_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E017-H3K27AC_subsample-5e6.tagAlign.gz 9999563 125 0.313904026207377 40 0.2568582 1500 0.1619564 1.938201 1.601103 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E017-H3K27AC_subsample-7.5e6.cc.plot.pdf

./E017-H3K27AC_subsample-7.5e6.cc.plot.pdf

./E017-H3K27AC_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E017-H3K27AC_subsample-7.5e6.tagAlign.gz 14999263 130 0.405452120005727 40 0.3311822 1500 0.2086377 1.943331 1.606066 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E017-H3K27ME3_merged.cc.plot.pdf

./E017-H3K27ME3_merged.cc.plot.pdf

./E017-H3K27ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E017-H3K27ME3_merged.tagAlign.gz 49574994 140 0.446553383476368 35 0.4341749 1500 0.4203384 1.062366 1.894625 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E017-H3K27ME3_subsample-0.1e6.cc.plot.pdf

./E017-H3K27ME3_subsample-0.1e6.cc.plot.pdf

./E017-H3K27ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E017-H3K27ME3_subsample-0.1e6.tagAlign.gz 199965 165 0.00348698412136364 30 0.003302226 1500 0.003230082 1.079534 3.560976 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E017-H3K27ME3_subsample-0.25e6.cc.plot.pdf

./E017-H3K27ME3_subsample-0.25e6.cc.plot.pdf

./E017-H3K27ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E017-H3K27ME3_subsample-0.25e6.tagAlign.gz 499882 135 0.00839557801730166 35 0.007974874 1500 0.00777243 1.080174 3.078126 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E017-H3K27ME3_subsample-0.5e6.cc.plot.pdf

./E017-H3K27ME3_subsample-0.5e6.cc.plot.pdf

./E017-H3K27ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E017-H3K27ME3_subsample-0.5e6.tagAlign.gz 999769 140 0.0162902676025145 30 0.01584689 1500 0.01537683 1.059404 1.94324 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E017-H3K27ME3_subsample-10e6.cc.plot.pdf

./E017-H3K27ME3_subsample-10e6.cc.plot.pdf

./E017-H3K27ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E017-H3K27ME3_subsample-10e6.tagAlign.gz 19995265 140 0.24673124196074 35 0.239964 1500 0.2322924 1.062158 1.882114 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E017-H3K27ME3_subsample-1e6.cc.plot.pdf

./E017-H3K27ME3_subsample-1e6.cc.plot.pdf

./E017-H3K27ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E017-H3K27ME3_subsample-1e6.tagAlign.gz 1999514 160 0.031908604573187 35 0.0311209 1500 0.03011195 1.059666 1.780719 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E017-H3K27ME3_subsample-2.5e6.cc.plot.pdf

./E017-H3K27ME3_subsample-2.5e6.cc.plot.pdf

./E017-H3K27ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E017-H3K27ME3_subsample-2.5e6.tagAlign.gz 4998844 155 0.0760853927345502 35 0.07386621 1500 0.07165812 1.061783 2.00503 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E017-H3K27ME3_subsample-20e6.cc.plot.pdf

./E017-H3K27ME3_subsample-20e6.cc.plot.pdf

./E017-H3K27ME3_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E017-H3K27ME3_subsample-20e6.tagAlign.gz 39990524 140 0.39474976177452 35 0.383813 1500 0.3715979 1.062304 1.895349 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E017-H3K27ME3_subsample-5e6.cc.plot.pdf

./E017-H3K27ME3_subsample-5e6.cc.plot.pdf

./E017-H3K27ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E017-H3K27ME3_subsample-5e6.tagAlign.gz 9997602 140 0.141241914834738 35 0.1372718 1500 0.1328777 1.062947 1.903533 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E017-H3K27ME3_subsample-7.5e6.cc.plot.pdf

./E017-H3K27ME3_subsample-7.5e6.cc.plot.pdf

./E017-H3K27ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E017-H3K27ME3_subsample-7.5e6.tagAlign.gz 14996434 140 0.197534123043511 35 0.1920306 1500 0.1858857 1.062665 1.895624 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E017-H3K36ME3_merged.cc.plot.pdf

./E017-H3K36ME3_merged.cc.plot.pdf

./E017-H3K36ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E017-H3K36ME3_merged.tagAlign.gz 33473939 130 0.387795392025633 35 0.3779128 1500 0.3501704 1.107448 1.356227 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E017-H3K36ME3_subsample-0.1e6.cc.plot.pdf

./E017-H3K36ME3_subsample-0.1e6.cc.plot.pdf

./E017-H3K36ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E017-H3K36ME3_subsample-0.1e6.tagAlign.gz 199980 125 0.00405106477152184 35 0.003921801 1500 0.003662748 1.106018 1.498984 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E017-H3K36ME3_subsample-0.25e6.cc.plot.pdf

./E017-H3K36ME3_subsample-0.25e6.cc.plot.pdf

./E017-H3K36ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E017-H3K36ME3_subsample-0.25e6.tagAlign.gz 499922 155 0.00991258490162346 40 0.009659507 1500 0.008771995 1.130026 1.285154 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E017-H3K36ME3_subsample-0.5e6.cc.plot.pdf

./E017-H3K36ME3_subsample-0.5e6.cc.plot.pdf

./E017-H3K36ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E017-H3K36ME3_subsample-0.5e6.tagAlign.gz 999864 130 0.0195980088554949 35 0.01900806 1500 0.01746485 1.12214 1.382282 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E017-H3K36ME3_subsample-10e6.cc.plot.pdf

./E017-H3K36ME3_subsample-10e6.cc.plot.pdf

./E017-H3K36ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E017-H3K36ME3_subsample-10e6.tagAlign.gz 19997009 130 0.277442999966731 35 0.2704264 1500 0.2507036 1.106657 1.35576 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E017-H3K36ME3_subsample-1e6.cc.plot.pdf

./E017-H3K36ME3_subsample-1e6.cc.plot.pdf

./E017-H3K36ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E017-H3K36ME3_subsample-1e6.tagAlign.gz 1999733 120 0.0379818259699759 35 0.03702853 1500 0.03425091 1.108929 1.343208 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E017-H3K36ME3_subsample-2.5e6.cc.plot.pdf

./E017-H3K36ME3_subsample-2.5e6.cc.plot.pdf

./E017-H3K36ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E017-H3K36ME3_subsample-2.5e6.tagAlign.gz 4999255 120 0.0895179094532683 35 0.08707337 1500 0.0808303 1.10748 1.39156 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E017-H3K36ME3_subsample-5e6.cc.plot.pdf

./E017-H3K36ME3_subsample-5e6.cc.plot.pdf

./E017-H3K36ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E017-H3K36ME3_subsample-5e6.tagAlign.gz 9998451 130 0.162987020735612 35 0.1589565 1500 0.1474799 1.105147 1.351201 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E017-H3K36ME3_subsample-7.5e6.cc.plot.pdf

./E017-H3K36ME3_subsample-7.5e6.cc.plot.pdf

./E017-H3K36ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E017-H3K36ME3_subsample-7.5e6.tagAlign.gz 14997708 120 0.224615369049241 35 0.2190108 1500 0.2031239 1.105805 1.352778 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E017-H3K4ME1_merged.cc.plot.pdf

./E017-H3K4ME1_merged.cc.plot.pdf

./E017-H3K4ME1_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E017-H3K4ME1_merged.tagAlign.gz 54017701 140 0.52865614906011 40 0.4840632 1500 0.4189702 1.261799 1.685066 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E017-H3K4ME1_subsample-0.1e6.cc.plot.pdf

./E017-H3K4ME1_subsample-0.1e6.cc.plot.pdf

./E017-H3K4ME1_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E017-H3K4ME1_subsample-0.1e6.tagAlign.gz 199996 160 0.00439625008943678 35 0.004029501 1500 0.003417172 1.286517 1.598942 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E017-H3K4ME1_subsample-0.25e6.cc.plot.pdf

./E017-H3K4ME1_subsample-0.25e6.cc.plot.pdf

./E017-H3K4ME1_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E017-H3K4ME1_subsample-0.25e6.tagAlign.gz 499986 150 0.010785050435452 40 0.009747526 1500 0.008394819 1.284727 1.766998 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E017-H3K4ME1_subsample-0.5e6.cc.plot.pdf

./E017-H3K4ME1_subsample-0.5e6.cc.plot.pdf

./E017-H3K4ME1_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E017-H3K4ME1_subsample-0.5e6.tagAlign.gz 999971 135 0.0210897325163525 35 0.01915864 1500 0.01684059 1.252315 1.83307 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E017-H3K4ME1_subsample-10e6.cc.plot.pdf

./E017-H3K4ME1_subsample-10e6.cc.plot.pdf

./E017-H3K4ME1_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E017-H3K4ME1_subsample-10e6.tagAlign.gz 19999494 140 0.296686476973059 40 0.2717785 1500 0.2352244 1.261291 1.681403 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E017-H3K4ME1_subsample-1e6.cc.plot.pdf

./E017-H3K4ME1_subsample-1e6.cc.plot.pdf

./E017-H3K4ME1_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E017-H3K4ME1_subsample-1e6.tagAlign.gz 1999938 135 0.0410533427070591 35 0.03771678 1500 0.03246167 1.264671 1.634917 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E017-H3K4ME1_subsample-2.5e6.cc.plot.pdf

./E017-H3K4ME1_subsample-2.5e6.cc.plot.pdf

./E017-H3K4ME1_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E017-H3K4ME1_subsample-2.5e6.tagAlign.gz 4999870 135 0.0963528074962367 35 0.08844193 1500 0.07632293 1.262436 1.652767 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E017-H3K4ME1_subsample-20e6.cc.plot.pdf

./E017-H3K4ME1_subsample-20e6.cc.plot.pdf

./E017-H3K4ME1_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E017-H3K4ME1_subsample-20e6.tagAlign.gz 39998938 140 0.455156975929085 40 0.4167928 1500 0.3606992 1.261874 1.683933 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E017-H3K4ME1_subsample-5e6.cc.plot.pdf

./E017-H3K4ME1_subsample-5e6.cc.plot.pdf

./E017-H3K4ME1_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E017-H3K4ME1_subsample-5e6.tagAlign.gz 9999749 140 0.175060324004967 40 0.1603523 1500 0.1388719 1.260589 1.684719 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E017-H3K4ME1_subsample-7.5e6.cc.plot.pdf

./E017-H3K4ME1_subsample-7.5e6.cc.plot.pdf

./E017-H3K4ME1_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E017-H3K4ME1_subsample-7.5e6.tagAlign.gz 14999561 140 0.240907919864235 40 0.2207184 1500 0.1910863 1.260729 1.681339 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E017-H3K4ME3_merged.cc.plot.pdf

./E017-H3K4ME3_merged.cc.plot.pdf

./E017-H3K4ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E017-H3K4ME3_merged.tagAlign.gz 28061836 140 0.798726737090221 40 0.6643147 1500 0.2501143 3.193447 1.32451 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E017-H3K4ME3_subsample-0.1e6.cc.plot.pdf

./E017-H3K4ME3_subsample-0.1e6.cc.plot.pdf

./E017-H3K4ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E017-H3K4ME3_subsample-0.1e6.tagAlign.gz 199977 140 0.0230018337084117 40 0.01824227 1500 0.006693802 3.436288 1.412138 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E017-H3K4ME3_subsample-0.25e6.cc.plot.pdf

./E017-H3K4ME3_subsample-0.25e6.cc.plot.pdf

./E017-H3K4ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E017-H3K4ME3_subsample-0.25e6.tagAlign.gz 499919 130 0.0535554333769624 35 0.04387706 1500 0.01671339 3.204343 1.356298 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E017-H3K4ME3_subsample-0.5e6.cc.plot.pdf

./E017-H3K4ME3_subsample-0.5e6.cc.plot.pdf

./E017-H3K4ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E017-H3K4ME3_subsample-0.5e6.tagAlign.gz 999855 145 0.10056783093695 40 0.08423888 1500 0.03164915 3.177584 1.310497 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E017-H3K4ME3_subsample-10e6.cc.plot.pdf

./E017-H3K4ME3_subsample-10e6.cc.plot.pdf

./E017-H3K4ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E017-H3K4ME3_subsample-10e6.tagAlign.gz 19997314 140 0.723480691693774 40 0.6015768 1500 0.2266195 3.192491 1.325114 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E017-H3K4ME3_subsample-1e6.cc.plot.pdf

./E017-H3K4ME3_subsample-1e6.cc.plot.pdf

./E017-H3K4ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E017-H3K4ME3_subsample-1e6.tagAlign.gz 1999744 140 0.184744739086388 40 0.1526267 1500 0.05808886 3.180382 1.339737 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E017-H3K4ME3_subsample-2.5e6.cc.plot.pdf

./E017-H3K4ME3_subsample-2.5e6.cc.plot.pdf

./E017-H3K4ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E017-H3K4ME3_subsample-2.5e6.tagAlign.gz 4999325 140 0.366036743268463 40 0.3043879 1500 0.1147614 3.189545 1.325107 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E017-H3K4ME3_subsample-5e6.cc.plot.pdf

./E017-H3K4ME3_subsample-5e6.cc.plot.pdf

./E017-H3K4ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E017-H3K4ME3_subsample-5e6.tagAlign.gz 9998680 140 0.545291886838515 40 0.4534265 1500 0.1708889 3.190915 1.325144 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E017-H3K4ME3_subsample-7.5e6.cc.plot.pdf

./E017-H3K4ME3_subsample-7.5e6.cc.plot.pdf

./E017-H3K4ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E017-H3K4ME3_subsample-7.5e6.tagAlign.gz 14997991 140 0.652329452439299 40 0.5426328 1500 0.2044741 3.190279 1.324394 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E017-H3K9ME3_merged.cc.plot.pdf

./E017-H3K9ME3_merged.cc.plot.pdf

./E017-H3K9ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E017-H3K9ME3_merged.tagAlign.gz 50509259 130 0.423109910404259 35 0.4286985 1500 0.3948847 1.071477 0.8347237 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E017-H3K9ME3_subsample-0.1e6.cc.plot.pdf

./E017-H3K9ME3_subsample-0.1e6.cc.plot.pdf

./E017-H3K9ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E017-H3K9ME3_subsample-0.1e6.tagAlign.gz 199970 420 0.00334908094403944 35 0.003432906 1500 0.003132202 1.069242 0.7212364 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E017-H3K9ME3_subsample-0.25e6.cc.plot.pdf

./E017-H3K9ME3_subsample-0.25e6.cc.plot.pdf

./E017-H3K9ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E017-H3K9ME3_subsample-0.25e6.tagAlign.gz 499927 130 0.00794637487323691 35 0.008138269 1500 0.007316057 1.086155 0.7666125 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E017-H3K9ME3_subsample-0.5e6.cc.plot.pdf

./E017-H3K9ME3_subsample-0.5e6.cc.plot.pdf

./E017-H3K9ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E017-H3K9ME3_subsample-0.5e6.tagAlign.gz 999830 110 0.0156699570401635 35 0.01624812 1500 0.01444706 1.084647 0.6789888 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E017-H3K9ME3_subsample-10e6.cc.plot.pdf

./E017-H3K9ME3_subsample-10e6.cc.plot.pdf

./E017-H3K9ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E017-H3K9ME3_subsample-10e6.tagAlign.gz 19996854 130 0.233386852927883 35 0.2426312 1500 0.2169388 1.075819 0.6401922 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E017-H3K9ME3_subsample-1e6.cc.plot.pdf

./E017-H3K9ME3_subsample-1e6.cc.plot.pdf

./E017-H3K9ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E017-H3K9ME3_subsample-1e6.tagAlign.gz 1999704 130 0.0306141843829914 35 0.03202514 1500 0.02837725 1.078828 0.613214 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E017-H3K9ME3_subsample-2.5e6.cc.plot.pdf

./E017-H3K9ME3_subsample-2.5e6.cc.plot.pdf

./E017-H3K9ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E017-H3K9ME3_subsample-2.5e6.tagAlign.gz 4999186 130 0.072753325524154 35 0.07590381 1500 0.06753582 1.077255 0.6235073 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E017-H3K9ME3_subsample-20e6.cc.plot.pdf

./E017-H3K9ME3_subsample-20e6.cc.plot.pdf

./E017-H3K9ME3_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E017-H3K9ME3_subsample-20e6.tagAlign.gz 39993839 130 0.370394943634679 35 0.378629 1500 0.3453427 1.072543 0.7526301 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E017-H3K9ME3_subsample-5e6.cc.plot.pdf

./E017-H3K9ME3_subsample-5e6.cc.plot.pdf

./E017-H3K9ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E017-H3K9ME3_subsample-5e6.tagAlign.gz 9998425 130 0.134256093868535 35 0.1398593 1500 0.1248215 1.075584 0.6273898 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E017-H3K9ME3_subsample-7.5e6.cc.plot.pdf

./E017-H3K9ME3_subsample-7.5e6.cc.plot.pdf

./E017-H3K9ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E017-H3K9ME3_subsample-7.5e6.tagAlign.gz 14997670 130 0.187155631662274 35 0.1947241 1500 0.174102 1.074977 0.6329903 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E026-H3K27AC_merged.cc.plot.pdf

./E026-H3K27AC_merged.cc.plot.pdf

./E026-H3K27AC_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E026-H3K27AC_merged.tagAlign.gz 82179636 255 0.752169855405352 40 0.6340427 1500 0.4465567 1.684377 1.630058 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E026-H3K27AC_subsample-0.1e6.cc.plot.pdf

./E026-H3K27AC_subsample-0.1e6.cc.plot.pdf

./E026-H3K27AC_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E026-H3K27AC_subsample-0.1e6.tagAlign.gz 199956 240 0.00818733822867538 40 0.006888372 1500 0.004597104 1.780977 1.56692 2 E026-H3K27AC_subsample-0.1e6.tagAlign.gz 199954 255 0.0084348948411688 40 0.006857832 1500 0.004694912 1.796603 1.729136 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E026-H3K27AC_subsample-0.25e6.cc.plot.pdf

./E026-H3K27AC_subsample-0.25e6.cc.plot.pdf

./E026-H3K27AC_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E026-H3K27AC_subsample-0.25e6.tagAlign.gz 499926 245 0.0200891476284296 35 0.01649781 1500 0.01155129 1.739126 1.726035 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E026-H3K27AC_subsample-0.5e6.cc.plot.pdf

./E026-H3K27AC_subsample-0.5e6.cc.plot.pdf

./E026-H3K27AC_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E026-H3K27AC_subsample-0.5e6.tagAlign.gz 999817 240 0.0385197034139469 40 0.03239735 1500 0.02273413 1.694356 1.633573 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E026-H3K27AC_subsample-10e6.cc.plot.pdf

./E026-H3K27AC_subsample-10e6.cc.plot.pdf

./E026-H3K27AC_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E026-H3K27AC_subsample-10e6.tagAlign.gz 19996523 260 0.438825065006241 40 0.3693476 1500 0.2599542 1.688086 1.635115 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E026-H3K27AC_subsample-1e6.cc.plot.pdf

./E026-H3K27AC_subsample-1e6.cc.plot.pdf

./E026-H3K27AC_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E026-H3K27AC_subsample-1e6.tagAlign.gz 1999673 260 0.0741518931555148 40 0.06201986 1500 0.04377695 1.693857 1.665027 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E026-H3K27AC_subsample-2.5e6.cc.plot.pdf

./E026-H3K27AC_subsample-2.5e6.cc.plot.pdf

./E026-H3K27AC_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E026-H3K27AC_subsample-2.5e6.tagAlign.gz 4999106 265 0.165645396777753 35 0.1391859 1500 0.09818577 1.687061 1.64535 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E026-H3K27AC_subsample-20e6.cc.plot.pdf

./E026-H3K27AC_subsample-20e6.cc.plot.pdf

./E026-H3K27AC_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E026-H3K27AC_subsample-20e6.tagAlign.gz 39993070 255 0.606549573076734 40 0.5098911 1500 0.3588628 1.690199 1.640002 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E026-H3K27AC_subsample-30e6.cc.plot.pdf

./E026-H3K27AC_subsample-30e6.cc.plot.pdf

./E026-H3K27AC_subsample-30e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E026-H3K27AC_subsample-30e6.tagAlign.gz 59989807 255 0.694676618451262 40 0.5843695 1500 0.411312 1.688929 1.637401 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E026-H3K27AC_subsample-5e6.cc.plot.pdf

./E026-H3K27AC_subsample-5e6.cc.plot.pdf

./E026-H3K27AC_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E026-H3K27AC_subsample-5e6.tagAlign.gz 9998319 260 0.283057889582205 40 0.2382672 1500 0.1675582 1.689311 1.63345 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E026-H3K27AC_subsample-7.5e6.cc.plot.pdf

./E026-H3K27AC_subsample-7.5e6.cc.plot.pdf

./E026-H3K27AC_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E026-H3K27AC_subsample-7.5e6.tagAlign.gz 14997479 245 0.371082519765845 40 0.3120269 1500 0.2197197 1.688891 1.639772 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E026-H3K27ME3_merged.cc.plot.pdf

./E026-H3K27ME3_merged.cc.plot.pdf

./E026-H3K27ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E026-H3K27ME3_merged.tagAlign.gz 120777347 180 0.636451728443737 35 0.6372492 1500 0.6239897 1.019972 0.9398567 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E026-H3K27ME3_subsample-0.1e6.cc.plot.pdf

./E026-H3K27ME3_subsample-0.1e6.cc.plot.pdf

./E026-H3K27ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E026-H3K27ME3_subsample-0.1e6.tagAlign.gz 199963 1325 0.00325275548829084 35 0.003191576 1500 0.003087747 1.05344 1.589231 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E026-H3K27ME3_subsample-0.25e6.cc.plot.pdf

./E026-H3K27ME3_subsample-0.25e6.cc.plot.pdf

./E026-H3K27ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E026-H3K27ME3_subsample-0.25e6.tagAlign.gz 499927 245 0.00746037475005187 30 0.007376737 1500 0.00719038 1.037549 1.448807 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E026-H3K27ME3_subsample-0.5e6.cc.plot.pdf

./E026-H3K27ME3_subsample-0.5e6.cc.plot.pdf

./E026-H3K27ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E026-H3K27ME3_subsample-0.5e6.tagAlign.gz 999862 205 0.0146013891671036 35 0.01471567 1500 0.01421148 1.027436 0.7733347 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E026-H3K27ME3_subsample-10e6.cc.plot.pdf

./E026-H3K27ME3_subsample-10e6.cc.plot.pdf

./E026-H3K27ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E026-H3K27ME3_subsample-10e6.tagAlign.gz 19996941 185 0.226852442250542 35 0.2282725 1500 0.2222622 1.020652 0.7637351 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E026-H3K27ME3_subsample-1e6.cc.plot.pdf

./E026-H3K27ME3_subsample-1e6.cc.plot.pdf

./E026-H3K27ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E026-H3K27ME3_subsample-1e6.tagAlign.gz 1999711 150 0.0286505028380245 35 0.02887001 1500 0.02802895 1.022175 0.7390132 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E026-H3K27ME3_subsample-2.5e6.cc.plot.pdf

./E026-H3K27ME3_subsample-2.5e6.cc.plot.pdf

./E026-H3K27ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E026-H3K27ME3_subsample-2.5e6.tagAlign.gz 4999216 185 0.0686290698923276 35 0.06903477 1500 0.06719366 1.021362 0.7796429 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E026-H3K27ME3_subsample-20e6.cc.plot.pdf

./E026-H3K27ME3_subsample-20e6.cc.plot.pdf

./E026-H3K27ME3_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E026-H3K27ME3_subsample-20e6.tagAlign.gz 39993847 180 0.36896992985356 35 0.3710925 1500 0.3615358 1.020563 0.7778989 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E026-H3K27ME3_subsample-30e6.cc.plot.pdf

./E026-H3K27ME3_subsample-30e6.cc.plot.pdf

./E026-H3K27ME3_subsample-30e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E026-H3K27ME3_subsample-30e6.tagAlign.gz 59990558 180 0.466528736668412 35 0.4684893 1500 0.4571218 1.020579 0.8275266 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E026-H3K27ME3_subsample-5e6.cc.plot.pdf

./E026-H3K27ME3_subsample-5e6.cc.plot.pdf

./E026-H3K27ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E026-H3K27ME3_subsample-5e6.tagAlign.gz 9998521 190 0.128217900603013 35 0.128964 1500 0.1255633 1.021142 0.7806152 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E026-H3K27ME3_subsample-7.5e6.cc.plot.pdf

./E026-H3K27ME3_subsample-7.5e6.cc.plot.pdf

./E026-H3K27ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E026-H3K27ME3_subsample-7.5e6.tagAlign.gz 14997566 175 0.18056857785815 35 0.1816071 1500 0.1769442 1.020483 0.7772752 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E026-H3K36ME3_merged.cc.plot.pdf

./E026-H3K36ME3_merged.cc.plot.pdf

./E026-H3K36ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E026-H3K36ME3_merged.tagAlign.gz 127069374 185 0.661091155597852 35 0.6657126 1500 0.6434133 1.027475 0.7927536 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E026-H3K36ME3_subsample-0.1e6.cc.plot.pdf

./E026-H3K36ME3_subsample-0.1e6.cc.plot.pdf

./E026-H3K36ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E026-H3K36ME3_subsample-0.1e6.tagAlign.gz 199988 265 0.00346981036903149 35 0.003286962 1500 0.00326889 1.061464 11.11824 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E026-H3K36ME3_subsample-0.25e6.cc.plot.pdf

./E026-H3K36ME3_subsample-0.25e6.cc.plot.pdf

./E026-H3K36ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E026-H3K36ME3_subsample-0.25e6.tagAlign.gz 499947 310 0.00808730127597217 35 0.008047538 1500 0.007813491 1.035043 1.169895 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E026-H3K36ME3_subsample-0.5e6.cc.plot.pdf

./E026-H3K36ME3_subsample-0.5e6.cc.plot.pdf

./E026-H3K36ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E026-H3K36ME3_subsample-0.5e6.tagAlign.gz 999904 205 0.0158854333709984 35 0.01600904 1500 0.01540893 1.030924 0.794023 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E026-H3K36ME3_subsample-10e6.cc.plot.pdf

./E026-H3K36ME3_subsample-10e6.cc.plot.pdf

./E026-H3K36ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E026-H3K36ME3_subsample-10e6.tagAlign.gz 19998010 185 0.240710107882942 35 0.2435784 1500 0.2340568 1.028426 0.698764 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E026-H3K36ME3_subsample-1e6.cc.plot.pdf

./E026-H3K36ME3_subsample-1e6.cc.plot.pdf

./E026-H3K36ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E026-H3K36ME3_subsample-1e6.tagAlign.gz 1999816 50 0.0311873755684791 35 0.03145613 1500 0.03014594 1.034546 0.7948725 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E026-H3K36ME3_subsample-2.5e6.cc.plot.pdf

./E026-H3K36ME3_subsample-2.5e6.cc.plot.pdf

./E026-H3K36ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E026-H3K36ME3_subsample-2.5e6.tagAlign.gz 4999523 180 0.0740343163489474 35 0.07490892 1500 0.07200845 1.028134 0.698462 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E026-H3K36ME3_subsample-20e6.cc.plot.pdf

./E026-H3K36ME3_subsample-20e6.cc.plot.pdf

./E026-H3K36ME3_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E026-H3K36ME3_subsample-20e6.tagAlign.gz 39995913 180 0.385898120030251 35 0.3903659 1500 0.375443 1.027848 0.7006104 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E026-H3K36ME3_subsample-30e6.cc.plot.pdf

./E026-H3K36ME3_subsample-30e6.cc.plot.pdf

./E026-H3K36ME3_subsample-30e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E026-H3K36ME3_subsample-30e6.tagAlign.gz 59993785 180 0.48340604097909 35 0.4884865 1500 0.4702331 1.028014 0.7216693 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E026-H3K36ME3_subsample-5e6.cc.plot.pdf

./E026-H3K36ME3_subsample-5e6.cc.plot.pdf

./E026-H3K36ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E026-H3K36ME3_subsample-5e6.tagAlign.gz 9998969 175 0.137560306653247 35 0.1392013 1500 0.1336446 1.0293 0.7046836 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E026-H3K36ME3_subsample-7.5e6.cc.plot.pdf

./E026-H3K36ME3_subsample-7.5e6.cc.plot.pdf

./E026-H3K36ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E026-H3K36ME3_subsample-7.5e6.tagAlign.gz 14998481 185 0.192489588803467 35 0.1947959 1500 0.1872428 1.028021 0.6946562 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E026-H3K4ME1_merged.cc.plot.pdf

./E026-H3K4ME1_merged.cc.plot.pdf

./E026-H3K4ME1_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E026-H3K4ME1_merged.tagAlign.gz 108408898 195 0.641464847640531 35 0.630141 1500 0.5787858 1.108294 1.220501 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E026-H3K4ME1_subsample-0.1e6.cc.plot.pdf

./E026-H3K4ME1_subsample-0.1e6.cc.plot.pdf

./E026-H3K4ME1_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E026-H3K4ME1_subsample-0.1e6.tagAlign.gz 199954 255 0.00358938299538684 35 0.00341457 1500 0.003152389 1.138623 1.666765 2 E026-H3K4ME1_subsample-0.1e6.tagAlign.gz 199960 330 0.00356780045680998 30 0.003425954 1500 0.003169629 1.125621 1.553385 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E026-H3K4ME1_subsample-0.25e6.cc.plot.pdf

./E026-H3K4ME1_subsample-0.25e6.cc.plot.pdf

./E026-H3K4ME1_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E026-H3K4ME1_subsample-0.25e6.tagAlign.gz 499893 290 0.00853777366246664 30 0.008248103 1500 0.007577879 1.126671 1.4322 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E026-H3K4ME1_subsample-0.5e6.cc.plot.pdf

./E026-H3K4ME1_subsample-0.5e6.cc.plot.pdf

./E026-H3K4ME1_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E026-H3K4ME1_subsample-0.5e6.tagAlign.gz 999764 195 0.0167624093363335 30 0.01637477 1500 0.01499232 1.118066 1.280405 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E026-H3K4ME1_subsample-10e6.cc.plot.pdf

./E026-H3K4ME1_subsample-10e6.cc.plot.pdf

./E026-H3K4ME1_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E026-H3K4ME1_subsample-10e6.tagAlign.gz 19995639 195 0.251666857053255 35 0.2476915 1500 0.2268273 1.109509 1.190537 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E026-H3K4ME1_subsample-1e6.cc.plot.pdf

./E026-H3K4ME1_subsample-1e6.cc.plot.pdf

./E026-H3K4ME1_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E026-H3K4ME1_subsample-1e6.tagAlign.gz 1999591 190 0.0328502837218646 35 0.03218797 1500 0.02944151 1.115781 1.241151 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E026-H3K4ME1_subsample-2.5e6.cc.plot.pdf

./E026-H3K4ME1_subsample-2.5e6.cc.plot.pdf

./E026-H3K4ME1_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E026-H3K4ME1_subsample-2.5e6.tagAlign.gz 4998926 205 0.0780358718966377 35 0.07668677 1500 0.07028866 1.11022 1.21086 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E026-H3K4ME1_subsample-20e6.cc.plot.pdf

./E026-H3K4ME1_subsample-20e6.cc.plot.pdf

./E026-H3K4ME1_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E026-H3K4ME1_subsample-20e6.tagAlign.gz 39991429 205 0.400722505784912 35 0.394532 1500 0.3613794 1.108869 1.186728 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E026-H3K4ME1_subsample-30e6.cc.plot.pdf

./E026-H3K4ME1_subsample-30e6.cc.plot.pdf

./E026-H3K4ME1_subsample-30e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E026-H3K4ME1_subsample-30e6.tagAlign.gz 59986912 200 0.499476636901705 35 0.4915871 1500 0.4506196 1.108422 1.192582 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E026-H3K4ME1_subsample-5e6.cc.plot.pdf

./E026-H3K4ME1_subsample-5e6.cc.plot.pdf

./E026-H3K4ME1_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E026-H3K4ME1_subsample-5e6.tagAlign.gz 9997875 195 0.144296912192366 35 0.1420067 1500 0.1300339 1.109687 1.191288 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E026-H3K4ME1_subsample-7.5e6.cc.plot.pdf

./E026-H3K4ME1_subsample-7.5e6.cc.plot.pdf

./E026-H3K4ME1_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E026-H3K4ME1_subsample-7.5e6.tagAlign.gz 14996869 200 0.201645634598449 35 0.1984855 1500 0.1818737 1.108712 1.190237 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E026-H3K4ME3_merged.cc.plot.pdf

./E026-H3K4ME3_merged.cc.plot.pdf

./E026-H3K4ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E026-H3K4ME3_merged.tagAlign.gz 117888326 175 0.769862464326367 35 0.7165343 1500 0.519838 1.480966 1.27112 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E026-H3K4ME3_subsample-0.1e6.cc.plot.pdf

./E026-H3K4ME3_subsample-0.1e6.cc.plot.pdf

./E026-H3K4ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E026-H3K4ME3_subsample-0.1e6.tagAlign.gz 199964 215 0.00633309729026193 40 0.005478679 1500 0.003843746 1.647637 1.522602 2 E026-H3K4ME3_subsample-0.1e6.tagAlign.gz 199966 160 0.00619373119439667 35 0.005597297 1500 0.003887171 1.593378 1.348767 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E026-H3K4ME3_subsample-0.25e6.cc.plot.pdf

./E026-H3K4ME3_subsample-0.25e6.cc.plot.pdf

./E026-H3K4ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E026-H3K4ME3_subsample-0.25e6.tagAlign.gz 499918 180 0.0149286273433878 30 0.01404207 1500 0.009704153 1.538375 1.204374 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E026-H3K4ME3_subsample-0.5e6.cc.plot.pdf

./E026-H3K4ME3_subsample-0.5e6.cc.plot.pdf

./E026-H3K4ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E026-H3K4ME3_subsample-0.5e6.tagAlign.gz 999838 150 0.0290233239920935 40 0.02690611 1500 0.01937558 1.497933 1.28115 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E026-H3K4ME3_subsample-10e6.cc.plot.pdf

./E026-H3K4ME3_subsample-10e6.cc.plot.pdf

./E026-H3K4ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E026-H3K4ME3_subsample-10e6.tagAlign.gz 19996725 185 0.370601099857892 35 0.3442288 1500 0.2480186 1.494247 1.274112 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E026-H3K4ME3_subsample-1e6.cc.plot.pdf

./E026-H3K4ME3_subsample-1e6.cc.plot.pdf

./E026-H3K4ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E026-H3K4ME3_subsample-1e6.tagAlign.gz 1999677 175 0.0565010593512289 35 0.05236978 1500 0.03751949 1.505912 1.278195 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E026-H3K4ME3_subsample-2.5e6.cc.plot.pdf

./E026-H3K4ME3_subsample-2.5e6.cc.plot.pdf

./E026-H3K4ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E026-H3K4ME3_subsample-2.5e6.tagAlign.gz 4999211 175 0.129595592006509 35 0.1204468 1500 0.08648882 1.498409 1.269414 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E026-H3K4ME3_subsample-20e6.cc.plot.pdf

./E026-H3K4ME3_subsample-20e6.cc.plot.pdf

./E026-H3K4ME3_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E026-H3K4ME3_subsample-20e6.tagAlign.gz 39993339 180 0.538886539417359 35 0.5007157 1500 0.3608694 1.493301 1.272948 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E026-H3K4ME3_subsample-30e6.cc.plot.pdf

./E026-H3K4ME3_subsample-30e6.cc.plot.pdf

./E026-H3K4ME3_subsample-30e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E026-H3K4ME3_subsample-30e6.tagAlign.gz 59989939 180 0.63534310311963 35 0.5903326 1500 0.4259372 1.491635 1.273794 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E026-H3K4ME3_subsample-5e6.cc.plot.pdf

./E026-H3K4ME3_subsample-5e6.cc.plot.pdf

./E026-H3K4ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E026-H3K4ME3_subsample-5e6.tagAlign.gz 9998307 180 0.228435966768224 35 0.2123357 1500 0.1527483 1.495506 1.270195 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E026-H3K4ME3_subsample-7.5e6.cc.plot.pdf

./E026-H3K4ME3_subsample-7.5e6.cc.plot.pdf

./E026-H3K4ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E026-H3K4ME3_subsample-7.5e6.tagAlign.gz 14997463 175 0.307038009765237 35 0.285237 1500 0.205478 1.494262 1.273336 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E026-H3K9ME3_merged.cc.plot.pdf

./E026-H3K9ME3_merged.cc.plot.pdf

./E026-H3K9ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E026-H3K9ME3_merged.tagAlign.gz 116585284 185 0.613387848871807 35 0.6232459 1500 0.603524 1.016344 0.5001473 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E026-H3K9ME3_subsample-0.1e6.cc.plot.pdf

./E026-H3K9ME3_subsample-0.1e6.cc.plot.pdf

./E026-H3K9ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E026-H3K9ME3_subsample-0.1e6.tagAlign.gz 199983 215 0.00328914714829997 30 0.003188228 1500 0.0031561 1.042156 4.141112 2 E026-H3K9ME3_subsample-0.1e6.tagAlign.gz 199981 1395 0.00325705755914133 40 0.003294908 1500 0.003025998 1.076358 0.8592438 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E026-H3K9ME3_subsample-0.25e6.cc.plot.pdf

./E026-H3K9ME3_subsample-0.25e6.cc.plot.pdf

./E026-H3K9ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E026-H3K9ME3_subsample-0.25e6.tagAlign.gz 499915 190 0.00732117875695805 30 0.007459925 1500 0.007015542 1.043566 0.6877771 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E026-H3K9ME3_subsample-0.5e6.cc.plot.pdf

./E026-H3K9ME3_subsample-0.5e6.cc.plot.pdf

./E026-H3K9ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E026-H3K9ME3_subsample-0.5e6.tagAlign.gz 999881 235 0.0143449535167347 35 0.01480879 1500 0.01389773 1.03218 0.4908796 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E026-H3K9ME3_subsample-10e6.cc.plot.pdf

./E026-H3K9ME3_subsample-10e6.cc.plot.pdf

./E026-H3K9ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E026-H3K9ME3_subsample-10e6.tagAlign.gz 19997268 175 0.221677771645423 35 0.2307439 1500 0.217428 1.019545 0.3191479 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E026-H3K9ME3_subsample-1e6.cc.plot.pdf

./E026-H3K9ME3_subsample-1e6.cc.plot.pdf

./E026-H3K9ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E026-H3K9ME3_subsample-1e6.tagAlign.gz 1999713 145 0.0281497534488472 35 0.02930234 1500 0.02760466 1.019746 0.3210804 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E026-H3K9ME3_subsample-2.5e6.cc.plot.pdf

./E026-H3K9ME3_subsample-2.5e6.cc.plot.pdf

./E026-H3K9ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E026-H3K9ME3_subsample-2.5e6.tagAlign.gz 4999304 185 0.067261413255504 35 0.06996965 1500 0.06596372 1.019673 0.3239433 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E026-H3K9ME3_subsample-20e6.cc.plot.pdf

./E026-H3K9ME3_subsample-20e6.cc.plot.pdf

./E026-H3K9ME3_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E026-H3K9ME3_subsample-20e6.tagAlign.gz 39994487 185 0.359649871444213 35 0.3735727 1500 0.3529546 1.018969 0.3247282 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E026-H3K9ME3_subsample-30e6.cc.plot.pdf

./E026-H3K9ME3_subsample-30e6.cc.plot.pdf

./E026-H3K9ME3_subsample-30e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E026-H3K9ME3_subsample-30e6.tagAlign.gz 59991707 180 0.454143509914551 35 0.467949 1500 0.4461999 1.017803 0.3652386 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E026-H3K9ME3_subsample-5e6.cc.plot.pdf

./E026-H3K9ME3_subsample-5e6.cc.plot.pdf

./E026-H3K9ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E026-H3K9ME3_subsample-5e6.tagAlign.gz 9998672 180 0.12552675221468 35 0.1308553 1500 0.1231292 1.019472 0.3103238 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E026-H3K9ME3_subsample-7.5e6.cc.plot.pdf

./E026-H3K9ME3_subsample-7.5e6.cc.plot.pdf

./E026-H3K9ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E026-H3K9ME3_subsample-7.5e6.tagAlign.gz 14997913 180 0.176602547319985 35 0.1838663 1500 0.1731538 1.019917 0.3219359 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E029-H3K27AC_merged.cc.plot.pdf

./E029-H3K27AC_merged.cc.plot.pdf

./E029-H3K27AC_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E029-H3K27AC_merged.tagAlign.gz 21280686 220 0.486794277293276 40 0.4097435 1500 0.264165 1.842766 1.529273 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E029-H3K27AC_subsample-0.1e6.cc.plot.pdf

./E029-H3K27AC_subsample-0.1e6.cc.plot.pdf

./E029-H3K27AC_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E029-H3K27AC_subsample-0.1e6.tagAlign.gz 199939 170 0.00901715445066794 30 0.007321359 1500 0.004713337 1.913115 1.650223 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E029-H3K27AC_subsample-0.25e6.cc.plot.pdf

./E029-H3K27AC_subsample-0.25e6.cc.plot.pdf

./E029-H3K27AC_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E029-H3K27AC_subsample-0.25e6.tagAlign.gz 499873 250 0.0214519951635714 40 0.01799412 1500 0.01147879 1.868837 1.530729 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E029-H3K27AC_subsample-0.5e6.cc.plot.pdf

./E029-H3K27AC_subsample-0.5e6.cc.plot.pdf

./E029-H3K27AC_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E029-H3K27AC_subsample-0.5e6.tagAlign.gz 999738 235 0.0415548024756783 35 0.03521757 1500 0.02265027 1.834627 1.504264 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E029-H3K27AC_subsample-10e6.cc.plot.pdf

./E029-H3K27AC_subsample-10e6.cc.plot.pdf

./E029-H3K27AC_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E029-H3K27AC_subsample-10e6.tagAlign.gz 19994563 220 0.470508515982888 40 0.3960359 1500 0.2553468 1.842625 1.529342 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E029-H3K27AC_subsample-1e6.cc.plot.pdf

./E029-H3K27AC_subsample-1e6.cc.plot.pdf

./E029-H3K27AC_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E029-H3K27AC_subsample-1e6.tagAlign.gz 1999427 215 0.0798190514355929 40 0.06687997 1500 0.04315413 1.849627 1.545358 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E029-H3K27AC_subsample-2.5e6.cc.plot.pdf

./E029-H3K27AC_subsample-2.5e6.cc.plot.pdf

./E029-H3K27AC_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E029-H3K27AC_subsample-2.5e6.tagAlign.gz 4998680 210 0.177965847952583 35 0.1499872 1500 0.09687154 1.837132 1.526749 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E029-H3K27AC_subsample-5e6.cc.plot.pdf

./E029-H3K27AC_subsample-5e6.cc.plot.pdf

./E029-H3K27AC_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E029-H3K27AC_subsample-5e6.tagAlign.gz 9997324 215 0.303402152185802 40 0.2555968 1500 0.1652533 1.835982 1.529152 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E029-H3K27AC_subsample-7.5e6.cc.plot.pdf

./E029-H3K27AC_subsample-7.5e6.cc.plot.pdf

./E029-H3K27AC_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E029-H3K27AC_subsample-7.5e6.tagAlign.gz 14995931 215 0.397470368789943 40 0.3347911 1500 0.2160452 1.839756 1.527843 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E029-H3K27ME3_merged.cc.plot.pdf

./E029-H3K27ME3_merged.cc.plot.pdf

./E029-H3K27ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E029-H3K27ME3_merged.tagAlign.gz 22728402 180 0.287586683474027 35 0.2890969 1500 0.2715527 1.059046 0.9139174 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E029-H3K27ME3_subsample-0.1e6.cc.plot.pdf

./E029-H3K27ME3_subsample-0.1e6.cc.plot.pdf

./E029-H3K27ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E029-H3K27ME3_subsample-0.1e6.tagAlign.gz 199984 155 0.00375473579146007 35 0.003773165 1500 0.003491044 1.075534 0.934677 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E029-H3K27ME3_subsample-0.25e6.cc.plot.pdf

./E029-H3K27ME3_subsample-0.25e6.cc.plot.pdf

./E029-H3K27ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E029-H3K27ME3_subsample-0.25e6.tagAlign.gz 499945 255 0.00899352880976136 35 0.008854389 1500 0.008228075 1.093029 1.222157 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E029-H3K27ME3_subsample-10e6.cc.plot.pdf

./E029-H3K27ME3_subsample-10e6.cc.plot.pdf

./E029-H3K27ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E029-H3K27ME3_subsample-10e6.tagAlign.gz 19998301 180 0.26196662890661 35 0.2633852 1500 0.2473172 1.059233 0.911715 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E029-H3K27ME3_subsample-1e6.cc.plot.pdf

./E029-H3K27ME3_subsample-1e6.cc.plot.pdf

./E029-H3K27ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E029-H3K27ME3_subsample-1e6.tagAlign.gz 1999850 175 0.0343119419647882 35 0.03434944 1500 0.0323282 1.061363 0.9814474 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E029-H3K27ME3_subsample-2.5e6.cc.plot.pdf

./E029-H3K27ME3_subsample-2.5e6.cc.plot.pdf

./E029-H3K27ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E029-H3K27ME3_subsample-2.5e6.tagAlign.gz 4999584 225 0.0814877532147855 35 0.08172085 1500 0.07688353 1.059886 0.9518135 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E029-H3K27ME3_subsample-5e6.cc.plot.pdf

./E029-H3K27ME3_subsample-5e6.cc.plot.pdf

./E029-H3K27ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E029-H3K27ME3_subsample-5e6.tagAlign.gz 9999154 180 0.15057041462528 35 0.1511786 1500 0.1422217 1.058702 0.9320952 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E029-H3K27ME3_subsample-7.5e6.cc.plot.pdf

./E029-H3K27ME3_subsample-7.5e6.cc.plot.pdf

./E029-H3K27ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E029-H3K27ME3_subsample-7.5e6.tagAlign.gz 14998710 175 0.210149022675205 35 0.2113116 1500 0.1984481 1.058962 0.9096228 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E029-H3K36ME3_merged.cc.plot.pdf

./E029-H3K36ME3_merged.cc.plot.pdf

./E029-H3K36ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E029-H3K36ME3_merged.tagAlign.gz 20504581 170 0.286305376778233 35 0.2909318 1500 0.2733292 1.047475 0.7371756 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E029-H3K36ME3_subsample-0.1e6.cc.plot.pdf

./E029-H3K36ME3_subsample-0.1e6.cc.plot.pdf

./E029-H3K36ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E029-H3K36ME3_subsample-0.1e6.tagAlign.gz 199995 65 0.004225705052166 40 0.004204933 1500 0.00385456 1.096287 1.059285 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E029-H3K36ME3_subsample-0.25e6.cc.plot.pdf

./E029-H3K36ME3_subsample-0.25e6.cc.plot.pdf

./E029-H3K36ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E029-H3K36ME3_subsample-0.25e6.tagAlign.gz 499992 200 0.0100492962762071 35 0.009930653 1500 0.009348132 1.075006 1.203673 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E029-H3K36ME3_subsample-10e6.cc.plot.pdf

./E029-H3K36ME3_subsample-10e6.cc.plot.pdf

./E029-H3K36ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E029-H3K36ME3_subsample-10e6.tagAlign.gz 19999500 170 0.281231324045528 35 0.2858067 1500 0.2685033 1.047404 0.7355815 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E029-H3K36ME3_subsample-1e6.cc.plot.pdf

./E029-H3K36ME3_subsample-1e6.cc.plot.pdf

./E029-H3K36ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E029-H3K36ME3_subsample-1e6.tagAlign.gz 1999960 170 0.0380402772506494 35 0.03837893 1500 0.03615186 1.052236 0.8479371 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E029-H3K36ME3_subsample-2.5e6.cc.plot.pdf

./E029-H3K36ME3_subsample-2.5e6.cc.plot.pdf

./E029-H3K36ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E029-H3K36ME3_subsample-2.5e6.tagAlign.gz 4999885 170 0.089530881471098 35 0.09089231 1500 0.08519503 1.050893 0.7610393 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E029-H3K36ME3_subsample-5e6.cc.plot.pdf

./E029-H3K36ME3_subsample-5e6.cc.plot.pdf

./E029-H3K36ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E029-H3K36ME3_subsample-5e6.tagAlign.gz 9999741 165 0.163845587366494 35 0.1664382 1500 0.1564093 1.047544 0.7414883 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E029-H3K36ME3_subsample-7.5e6.cc.plot.pdf

./E029-H3K36ME3_subsample-7.5e6.cc.plot.pdf

./E029-H3K36ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E029-H3K36ME3_subsample-7.5e6.tagAlign.gz 14999600 170 0.226987524671052 35 0.2305009 1500 0.2166508 1.047712 0.7463295 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E029-H3K4ME1_merged.cc.plot.pdf

./E029-H3K4ME1_merged.cc.plot.pdf

./E029-H3K4ME1_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E029-H3K4ME1_merged.tagAlign.gz 30927776 200 0.467172198237488 35 0.4474397 1500 0.3602043 1.296964 1.226198 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E029-H3K4ME1_subsample-0.1e6.cc.plot.pdf

./E029-H3K4ME1_subsample-0.1e6.cc.plot.pdf

./E029-H3K4ME1_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E029-H3K4ME1_subsample-0.1e6.tagAlign.gz 199986 190 0.005714890737847 30 0.005526082 1500 0.004161967 1.373123 1.138411 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E029-H3K4ME1_subsample-0.25e6.cc.plot.pdf

./E029-H3K4ME1_subsample-0.25e6.cc.plot.pdf

./E029-H3K4ME1_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E029-H3K4ME1_subsample-0.25e6.tagAlign.gz 499966 275 0.0138070439537728 40 0.01301294 1500 0.01062155 1.299909 1.33207 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E029-H3K4ME1_subsample-0.5e6.cc.plot.pdf

./E029-H3K4ME1_subsample-0.5e6.cc.plot.pdf

./E029-H3K4ME1_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E029-H3K4ME1_subsample-0.5e6.tagAlign.gz 999921 250 0.0271445675562638 30 0.02588224 1500 0.020733 1.309245 1.245148 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E029-H3K4ME1_subsample-10e6.cc.plot.pdf

./E029-H3K4ME1_subsample-10e6.cc.plot.pdf

./E029-H3K4ME1_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E029-H3K4ME1_subsample-10e6.tagAlign.gz 19998378 210 0.359168915188835 35 0.3440992 1500 0.2770134 1.296576 1.224634 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E029-H3K4ME1_subsample-1e6.cc.plot.pdf

./E029-H3K4ME1_subsample-1e6.cc.plot.pdf

./E029-H3K4ME1_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E029-H3K4ME1_subsample-1e6.tagAlign.gz 1999845 205 0.0528224940328361 35 0.05041068 1500 0.04052972 1.303303 1.244087 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E029-H3K4ME1_subsample-2.5e6.cc.plot.pdf

./E029-H3K4ME1_subsample-2.5e6.cc.plot.pdf

./E029-H3K4ME1_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E029-H3K4ME1_subsample-2.5e6.tagAlign.gz 4999601 195 0.121855151767025 35 0.116573 1500 0.09400838 1.296216 1.234091 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E029-H3K4ME1_subsample-5e6.cc.plot.pdf

./E029-H3K4ME1_subsample-5e6.cc.plot.pdf

./E029-H3K4ME1_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E029-H3K4ME1_subsample-5e6.tagAlign.gz 9999196 205 0.217536522045816 35 0.2080689 1500 0.1680067 1.294809 1.236323 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E029-H3K4ME1_subsample-7.5e6.cc.plot.pdf

./E029-H3K4ME1_subsample-7.5e6.cc.plot.pdf

./E029-H3K4ME1_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E029-H3K4ME1_subsample-7.5e6.tagAlign.gz 14998843 210 0.294913605971217 35 0.2826249 1500 0.2275833 1.295849 1.223261 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E029-H3K4ME3_merged.cc.plot.pdf

./E029-H3K4ME3_merged.cc.plot.pdf

./E029-H3K4ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E029-H3K4ME3_merged.tagAlign.gz 20973309 200 0.531105016181494 40 0.4479226 1500 0.2300042 2.30911 1.381714 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E029-H3K4ME3_subsample-0.1e6.cc.plot.pdf

./E029-H3K4ME3_subsample-0.1e6.cc.plot.pdf

./E029-H3K4ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E029-H3K4ME3_subsample-0.1e6.tagAlign.gz 199991 215 0.0103379913008695 40 0.008207639 1500 0.004156984 2.486897 1.525928 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E029-H3K4ME3_subsample-0.25e6.cc.plot.pdf

./E029-H3K4ME3_subsample-0.25e6.cc.plot.pdf

./E029-H3K4ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E029-H3K4ME3_subsample-0.25e6.tagAlign.gz 499986 210 0.0246119591710532 35 0.0205662 1500 0.01041579 2.362947 1.398581 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E029-H3K4ME3_subsample-0.5e6.cc.plot.pdf

./E029-H3K4ME3_subsample-0.5e6.cc.plot.pdf

./E029-H3K4ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E029-H3K4ME3_subsample-0.5e6.tagAlign.gz 999973 195 0.0477415123812792 35 0.03977584 1500 0.02045067 2.334472 1.412191 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E029-H3K4ME3_subsample-10e6.cc.plot.pdf

./E029-H3K4ME3_subsample-10e6.cc.plot.pdf

./E029-H3K4ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E029-H3K4ME3_subsample-10e6.tagAlign.gz 19999458 200 0.518092360533813 40 0.4369875 1500 0.2243411 2.309396 1.381407 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E029-H3K4ME3_subsample-1e6.cc.plot.pdf

./E029-H3K4ME3_subsample-1e6.cc.plot.pdf

./E029-H3K4ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E029-H3K4ME3_subsample-1e6.tagAlign.gz 1999944 190 0.090885744291029 35 0.07624855 1500 0.03913907 2.322123 1.394433 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E029-H3K4ME3_subsample-2.5e6.cc.plot.pdf

./E029-H3K4ME3_subsample-2.5e6.cc.plot.pdf

./E029-H3K4ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E029-H3K4ME3_subsample-2.5e6.tagAlign.gz 4999880 200 0.201201363545348 40 0.1696625 1500 0.08690663 2.315144 1.381108 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E029-H3K4ME3_subsample-5e6.cc.plot.pdf

./E029-H3K4ME3_subsample-5e6.cc.plot.pdf

./E029-H3K4ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E029-H3K4ME3_subsample-5e6.tagAlign.gz 9999722 205 0.339263448609819 40 0.2858994 1500 0.1466665 2.313163 1.383272 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E029-H3K4ME3_subsample-7.5e6.cc.plot.pdf

./E029-H3K4ME3_subsample-7.5e6.cc.plot.pdf

./E029-H3K4ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E029-H3K4ME3_subsample-7.5e6.tagAlign.gz 14999570 210 0.440567214197407 40 0.3715751 1500 0.1906644 2.310694 1.38136 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E029-H3K9ME3_merged.cc.plot.pdf

./E029-H3K9ME3_merged.cc.plot.pdf

./E029-H3K9ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E029-H3K9ME3_merged.tagAlign.gz 25330385 200 0.312520729244684 35 0.3229938 1500 0.2673634 1.168899 0.8117378 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E029-H3K9ME3_subsample-0.1e6.cc.plot.pdf

./E029-H3K9ME3_subsample-0.1e6.cc.plot.pdf

./E029-H3K9ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E029-H3K9ME3_subsample-0.1e6.tagAlign.gz 199975 180 0.00393425512640959 40 0.003937635 1500 0.003270802 1.202841 0.994931 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E029-H3K9ME3_subsample-0.25e6.cc.plot.pdf

./E029-H3K9ME3_subsample-0.25e6.cc.plot.pdf

./E029-H3K9ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E029-H3K9ME3_subsample-0.25e6.tagAlign.gz 499949 180 0.00954609793413789 35 0.009762741 1500 0.008089122 1.180115 0.8705539 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E029-H3K9ME3_subsample-0.5e6.cc.plot.pdf

./E029-H3K9ME3_subsample-0.5e6.cc.plot.pdf

./E029-H3K9ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E029-H3K9ME3_subsample-0.5e6.tagAlign.gz 999871 190 0.0186738897874537 35 0.01916943 1500 0.01577319 1.183901 0.8540904 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E029-H3K9ME3_subsample-10e6.cc.plot.pdf

./E029-H3K9ME3_subsample-10e6.cc.plot.pdf

./E029-H3K9ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E029-H3K9ME3_subsample-10e6.tagAlign.gz 19997445 200 0.265715647377273 35 0.2747342 1500 0.2274033 1.168477 0.8094572 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E029-H3K9ME3_subsample-1e6.cc.plot.pdf

./E029-H3K9ME3_subsample-1e6.cc.plot.pdf

./E029-H3K9ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E029-H3K9ME3_subsample-1e6.tagAlign.gz 1999731 210 0.0364264237308682 35 0.03769314 1500 0.03119155 1.16783 0.8051684 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E029-H3K9ME3_subsample-2.5e6.cc.plot.pdf

./E029-H3K9ME3_subsample-2.5e6.cc.plot.pdf

./E029-H3K9ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E029-H3K9ME3_subsample-2.5e6.tagAlign.gz 4999388 210 0.0853250890165608 35 0.08827112 1500 0.07307522 1.167634 0.8061302 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E029-H3K9ME3_subsample-5e6.cc.plot.pdf

./E029-H3K9ME3_subsample-5e6.cc.plot.pdf

./E029-H3K9ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E029-H3K9ME3_subsample-5e6.tagAlign.gz 9998707 205 0.155729063734642 35 0.1609848 1500 0.1333017 1.168245 0.8101469 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E029-H3K9ME3_subsample-7.5e6.cc.plot.pdf

./E029-H3K9ME3_subsample-7.5e6.cc.plot.pdf

./E029-H3K9ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E029-H3K9ME3_subsample-7.5e6.tagAlign.gz 14998085 200 0.214985271457594 35 0.2223076 1500 0.1839761 1.16855 0.8089742 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E032-H3K27AC_merged.cc.plot.pdf

./E032-H3K27AC_merged.cc.plot.pdf

./E032-H3K27AC_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E032-H3K27AC_merged.tagAlign.gz 21589028 175 0.388852210821813 35 0.3552568 1500 0.2541152 1.53022 1.332162 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E032-H3K27AC_subsample-0.1e6.cc.plot.pdf

./E032-H3K27AC_subsample-0.1e6.cc.plot.pdf

./E032-H3K27AC_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E032-H3K27AC_subsample-0.1e6.tagAlign.gz 199935 175 0.00609182106824984 40 0.00546491 1500 0.003634552 1.676086 1.342507 1 E032-H3K27AC_subsample-0.1e6.tagAlign.gz 199929 155 0.00611653788981215 35 0.005280898 1500 0.0035814 1.707862 1.491698 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E032-H3K27AC_subsample-0.25e6.cc.plot.pdf

./E032-H3K27AC_subsample-0.25e6.cc.plot.pdf

./E032-H3K27AC_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E032-H3K27AC_subsample-0.25e6.tagAlign.gz 499806 135 0.0142292519282476 30 0.01292731 1500 0.009211652 1.544701 1.350394 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E032-H3K27AC_subsample-0.5e6.cc.plot.pdf

./E032-H3K27AC_subsample-0.5e6.cc.plot.pdf

./E032-H3K27AC_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E032-H3K27AC_subsample-0.5e6.tagAlign.gz 999620 165 0.0282515230813394 35 0.02569546 1500 0.01828917 1.544713 1.34512 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E032-H3K27AC_subsample-10e6.cc.plot.pdf

./E032-H3K27AC_subsample-10e6.cc.plot.pdf

./E032-H3K27AC_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E032-H3K27AC_subsample-10e6.tagAlign.gz 19992489 175 0.370177893263123 35 0.3381131 1500 0.2419485 1.529986 1.333436 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E032-H3K27AC_subsample-1e6.cc.plot.pdf

./E032-H3K27AC_subsample-1e6.cc.plot.pdf

./E032-H3K27AC_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E032-H3K27AC_subsample-1e6.tagAlign.gz 1999252 170 0.0545860875301892 40 0.04979896 1500 0.03543957 1.540258 1.33338 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E032-H3K27AC_subsample-2.5e6.cc.plot.pdf

./E032-H3K27AC_subsample-2.5e6.cc.plot.pdf

./E032-H3K27AC_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E032-H3K27AC_subsample-2.5e6.tagAlign.gz 4998195 180 0.126226134494571 40 0.1152228 1500 0.08227615 1.534176 1.333972 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E032-H3K27AC_subsample-5e6.cc.plot.pdf

./E032-H3K27AC_subsample-5e6.cc.plot.pdf

./E032-H3K27AC_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E032-H3K27AC_subsample-5e6.tagAlign.gz 9996293 180 0.224879426334144 35 0.2052673 1500 0.1465986 1.533981 1.334286 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E032-H3K27AC_subsample-7.5e6.cc.plot.pdf

./E032-H3K27AC_subsample-7.5e6.cc.plot.pdf

./E032-H3K27AC_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E032-H3K27AC_subsample-7.5e6.tagAlign.gz 14994369 190 0.304113984744134 35 0.277993 1500 0.198773 1.529956 1.329727 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E032-H3K27ME3_merged.cc.plot.pdf

./E032-H3K27ME3_merged.cc.plot.pdf

./E032-H3K27ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E032-H3K27ME3_merged.tagAlign.gz 22789715 160 0.248166906844452 35 0.2515408 1500 0.2444001 1.015413 0.5275145 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E032-H3K27ME3_subsample-0.1e6.cc.plot.pdf

./E032-H3K27ME3_subsample-0.1e6.cc.plot.pdf

./E032-H3K27ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E032-H3K27ME3_subsample-0.1e6.tagAlign.gz 199991 160 0.00323467722618447 35 0.003143538 1500 0.003093041 1.045792 2.804845 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E032-H3K27ME3_subsample-0.25e6.cc.plot.pdf

./E032-H3K27ME3_subsample-0.25e6.cc.plot.pdf

./E032-H3K27ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E032-H3K27ME3_subsample-0.25e6.tagAlign.gz 499988 180 0.00731551073599911 40 0.007363111 1500 0.007128944 1.02617 0.796723 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E032-H3K27ME3_subsample-0.5e6.cc.plot.pdf

./E032-H3K27ME3_subsample-0.5e6.cc.plot.pdf

./E032-H3K27ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E032-H3K27ME3_subsample-0.5e6.tagAlign.gz 999952 100 0.0143902531640151 35 0.01451461 1500 0.01405904 1.023559 0.7270346 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E032-H3K27ME3_subsample-10e6.cc.plot.pdf

./E032-H3K27ME3_subsample-10e6.cc.plot.pdf

./E032-H3K27ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E032-H3K27ME3_subsample-10e6.tagAlign.gz 19999073 155 0.224644881033506 35 0.2276871 1500 0.2212218 1.015473 0.5294538 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E032-H3K27ME3_subsample-1e6.cc.plot.pdf

./E032-H3K27ME3_subsample-1e6.cc.plot.pdf

./E032-H3K27ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E032-H3K27ME3_subsample-1e6.tagAlign.gz 1999915 140 0.028294132302436 35 0.02847029 1500 0.02778379 1.018368 0.7433952 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E032-H3K27ME3_subsample-2.5e6.cc.plot.pdf

./E032-H3K27ME3_subsample-2.5e6.cc.plot.pdf

./E032-H3K27ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E032-H3K27ME3_subsample-2.5e6.tagAlign.gz 4999803 185 0.0677098956407069 35 0.06864694 1500 0.06671235 1.014953 0.5156367 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E032-H3K27ME3_subsample-5e6.cc.plot.pdf

./E032-H3K27ME3_subsample-5e6.cc.plot.pdf

./E032-H3K27ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E032-H3K27ME3_subsample-5e6.tagAlign.gz 9999538 160 0.126727393900429 35 0.1283851 1500 0.1247116 1.016163 0.5487302 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E032-H3K27ME3_subsample-7.5e6.cc.plot.pdf

./E032-H3K27ME3_subsample-7.5e6.cc.plot.pdf

./E032-H3K27ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E032-H3K27ME3_subsample-7.5e6.tagAlign.gz 14999307 155 0.178643877718966 35 0.1809521 1500 0.1758932 1.015639 0.5437359 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E032-H3K36ME3_merged.cc.plot.pdf

./E032-H3K36ME3_merged.cc.plot.pdf

./E032-H3K36ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E032-H3K36ME3_merged.tagAlign.gz 22972543 150 0.279252189735222 35 0.2838751 1500 0.2716886 1.027839 0.62065 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E032-H3K36ME3_subsample-0.1e6.cc.plot.pdf

./E032-H3K36ME3_subsample-0.1e6.cc.plot.pdf

./E032-H3K36ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E032-H3K36ME3_subsample-0.1e6.tagAlign.gz 199992 300 0.00358845675181691 40 0.003658655 1500 0.003196347 1.122674 0.8481572 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E032-H3K36ME3_subsample-0.25e6.cc.plot.pdf

./E032-H3K36ME3_subsample-0.25e6.cc.plot.pdf

./E032-H3K36ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E032-H3K36ME3_subsample-0.25e6.tagAlign.gz 499981 -35 0.00858476095579901 40 0.008572558 1500 0.008243526 1.041394 1.037086 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E032-H3K36ME3_subsample-0.5e6.cc.plot.pdf

./E032-H3K36ME3_subsample-0.5e6.cc.plot.pdf

./E032-H3K36ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E032-H3K36ME3_subsample-0.5e6.tagAlign.gz 999959 210 0.0167690725515252 35 0.01682224 1500 0.0162716 1.030573 0.9034424 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E032-H3K36ME3_subsample-10e6.cc.plot.pdf

./E032-H3K36ME3_subsample-10e6.cc.plot.pdf

./E032-H3K36ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E032-H3K36ME3_subsample-10e6.tagAlign.gz 19999263 150 0.252251302790053 35 0.2563944 1500 0.2453815 1.027996 0.623794 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E032-H3K36ME3_subsample-1e6.cc.plot.pdf

./E032-H3K36ME3_subsample-1e6.cc.plot.pdf

./E032-H3K36ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E032-H3K36ME3_subsample-1e6.tagAlign.gz 1999932 55 0.0328593152332539 35 0.03328769 1500 0.0319222 1.029356 0.686286 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E032-H3K36ME3_subsample-2.5e6.cc.plot.pdf

./E032-H3K36ME3_subsample-2.5e6.cc.plot.pdf

./E032-H3K36ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E032-H3K36ME3_subsample-2.5e6.tagAlign.gz 4999810 140 0.0780417515266437 35 0.07932156 1500 0.07583386 1.029115 0.6330504 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E032-H3K36ME3_subsample-5e6.cc.plot.pdf

./E032-H3K36ME3_subsample-5e6.cc.plot.pdf

./E032-H3K36ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E032-H3K36ME3_subsample-5e6.tagAlign.gz 9999646 160 0.144412903773527 35 0.1467972 1500 0.1405231 1.027681 0.619976 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E032-H3K36ME3_subsample-7.5e6.cc.plot.pdf

./E032-H3K36ME3_subsample-7.5e6.cc.plot.pdf

./E032-H3K36ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E032-H3K36ME3_subsample-7.5e6.tagAlign.gz 14999423 185 0.201996351075276 35 0.2053423 1500 0.1965434 1.027744 0.619732 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E032-H3K4ME1_merged.cc.plot.pdf

./E032-H3K4ME1_merged.cc.plot.pdf

./E032-H3K4ME1_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E032-H3K4ME1_merged.tagAlign.gz 29385922 180 0.410436278459812 35 0.4003465 1500 0.3365137 1.219672 1.158065 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E032-H3K4ME1_subsample-0.1e6.cc.plot.pdf

./E032-H3K4ME1_subsample-0.1e6.cc.plot.pdf

./E032-H3K4ME1_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E032-H3K4ME1_subsample-0.1e6.tagAlign.gz 199983 100 0.00489500197117791 30 0.004815637 1500 0.003810208 1.284707 1.078936 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E032-H3K4ME1_subsample-0.25e6.cc.plot.pdf

./E032-H3K4ME1_subsample-0.25e6.cc.plot.pdf

./E032-H3K4ME1_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E032-H3K4ME1_subsample-0.25e6.tagAlign.gz 499969 165 0.0117484059648949 40 0.01156258 1500 0.009327663 1.259523 1.083147 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E032-H3K4ME1_subsample-0.5e6.cc.plot.pdf

./E032-H3K4ME1_subsample-0.5e6.cc.plot.pdf

./E032-H3K4ME1_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E032-H3K4ME1_subsample-0.5e6.tagAlign.gz 999918 200 0.0230445507183969 40 0.02240368 1500 0.01867243 1.234149 1.171757 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E032-H3K4ME1_subsample-10e6.cc.plot.pdf

./E032-H3K4ME1_subsample-10e6.cc.plot.pdf

./E032-H3K4ME1_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E032-H3K4ME1_subsample-10e6.tagAlign.gz 19998323 180 0.320280980166304 35 0.3125481 1500 0.2627238 1.219078 1.155202 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E032-H3K4ME1_subsample-1e6.cc.plot.pdf

./E032-H3K4ME1_subsample-1e6.cc.plot.pdf

./E032-H3K4ME1_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E032-H3K4ME1_subsample-1e6.tagAlign.gz 1999829 190 0.0451568524288054 35 0.04359197 1500 0.03670968 1.230107 1.227379 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E032-H3K4ME1_subsample-2.5e6.cc.plot.pdf

./E032-H3K4ME1_subsample-2.5e6.cc.plot.pdf

./E032-H3K4ME1_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E032-H3K4ME1_subsample-2.5e6.tagAlign.gz 4999560 195 0.105087328697179 35 0.10234 1500 0.08622152 1.218806 1.170447 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E032-H3K4ME1_subsample-5e6.cc.plot.pdf

./E032-H3K4ME1_subsample-5e6.cc.plot.pdf

./E032-H3K4ME1_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E032-H3K4ME1_subsample-5e6.tagAlign.gz 9999195 180 0.190245299435254 35 0.1857082 1500 0.1560654 1.21901 1.153057 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E032-H3K4ME1_subsample-7.5e6.cc.plot.pdf

./E032-H3K4ME1_subsample-7.5e6.cc.plot.pdf

./E032-H3K4ME1_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E032-H3K4ME1_subsample-7.5e6.tagAlign.gz 14998750 175 0.26056157885157 35 0.2542847 1500 0.2136986 1.219294 1.154655 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E032-H3K4ME3_merged.cc.plot.pdf

./E032-H3K4ME3_merged.cc.plot.pdf

./E032-H3K4ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E032-H3K4ME3_merged.tagAlign.gz 25181610 205 0.454826800118445 40 0.39887 1500 0.2484068 1.830975 1.371897 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E032-H3K4ME3_subsample-0.1e6.cc.plot.pdf

./E032-H3K4ME3_subsample-0.1e6.cc.plot.pdf

./E032-H3K4ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E032-H3K4ME3_subsample-0.1e6.tagAlign.gz 199996 195 0.00682377563218207 40 0.005960048 1500 0.003499204 1.950093 1.350988 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E032-H3K4ME3_subsample-0.25e6.cc.plot.pdf

./E032-H3K4ME3_subsample-0.25e6.cc.plot.pdf

./E032-H3K4ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E032-H3K4ME3_subsample-0.25e6.tagAlign.gz 499987 210 0.0158746037237547 40 0.01379769 1500 0.008248013 1.924658 1.37424 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E032-H3K4ME3_subsample-0.5e6.cc.plot.pdf

./E032-H3K4ME3_subsample-0.5e6.cc.plot.pdf

./E032-H3K4ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E032-H3K4ME3_subsample-0.5e6.tagAlign.gz 999968 180 0.0307857425501732 40 0.02713732 1500 0.01683365 1.828822 1.35409 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E032-H3K4ME3_subsample-10e6.cc.plot.pdf

./E032-H3K4ME3_subsample-10e6.cc.plot.pdf

./E032-H3K4ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E032-H3K4ME3_subsample-10e6.tagAlign.gz 19999318 205 0.395935621003394 40 0.3471394 1500 0.2160949 1.83223 1.372364 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E032-H3K4ME3_subsample-1e6.cc.plot.pdf

./E032-H3K4ME3_subsample-1e6.cc.plot.pdf

./E032-H3K4ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E032-H3K4ME3_subsample-1e6.tagAlign.gz 1999939 205 0.0596877651563105 35 0.05228127 1500 0.0325506 1.833692 1.37538 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E032-H3K4ME3_subsample-2.5e6.cc.plot.pdf

./E032-H3K4ME3_subsample-2.5e6.cc.plot.pdf

./E032-H3K4ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E032-H3K4ME3_subsample-2.5e6.tagAlign.gz 4999860 210 0.137563264690675 40 0.1206151 1500 0.07495935 1.835171 1.371217 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E032-H3K4ME3_subsample-5e6.cc.plot.pdf

./E032-H3K4ME3_subsample-5e6.cc.plot.pdf

./E032-H3K4ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E032-H3K4ME3_subsample-5e6.tagAlign.gz 9999659 205 0.243364103978919 40 0.2132372 1500 0.13262 1.835048 1.373703 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E032-H3K4ME3_subsample-7.5e6.cc.plot.pdf

./E032-H3K4ME3_subsample-7.5e6.cc.plot.pdf

./E032-H3K4ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E032-H3K4ME3_subsample-7.5e6.tagAlign.gz 14999497 210 0.327577947908587 40 0.2871706 1500 0.1786192 1.833946 1.372242 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E032-H3K9ME3_merged.cc.plot.pdf

./E032-H3K9ME3_merged.cc.plot.pdf

./E032-H3K9ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E032-H3K9ME3_merged.tagAlign.gz 32879552 145 0.325251936541306 35 0.338242 1500 0.317111 1.025672 0.3852622 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E032-H3K9ME3_subsample-0.1e6.cc.plot.pdf

./E032-H3K9ME3_subsample-0.1e6.cc.plot.pdf

./E032-H3K9ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E032-H3K9ME3_subsample-0.1e6.tagAlign.gz 199986 155 0.00328804720498643 40 0.003272604 1500 0.003024529 1.087127 1.062251 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E032-H3K9ME3_subsample-0.25e6.cc.plot.pdf

./E032-H3K9ME3_subsample-0.25e6.cc.plot.pdf

./E032-H3K9ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E032-H3K9ME3_subsample-0.25e6.tagAlign.gz 499969 55 0.00753308950825516 35 0.007735603 1500 0.007164893 1.051389 0.6451546 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E032-H3K9ME3_subsample-0.5e6.cc.plot.pdf

./E032-H3K9ME3_subsample-0.5e6.cc.plot.pdf

./E032-H3K9ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E032-H3K9ME3_subsample-0.5e6.tagAlign.gz 999933 60 0.0148525194355989 35 0.01529715 1500 0.01420456 1.045616 0.5930486 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E032-H3K9ME3_subsample-10e6.cc.plot.pdf

./E032-H3K9ME3_subsample-10e6.cc.plot.pdf

./E032-H3K9ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E032-H3K9ME3_subsample-10e6.tagAlign.gz 19998770 155 0.227566930624462 35 0.2367203 1500 0.2218359 1.025835 0.3850359 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E032-H3K9ME3_subsample-1e6.cc.plot.pdf

./E032-H3K9ME3_subsample-1e6.cc.plot.pdf

./E032-H3K9ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E032-H3K9ME3_subsample-1e6.tagAlign.gz 1999861 155 0.0289590065172609 35 0.02991055 1500 0.02810808 1.030273 0.4720898 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E032-H3K9ME3_subsample-2.5e6.cc.plot.pdf

./E032-H3K9ME3_subsample-2.5e6.cc.plot.pdf

./E032-H3K9ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E032-H3K9ME3_subsample-2.5e6.tagAlign.gz 4999708 145 0.0691115650728922 35 0.07171321 1500 0.06727846 1.027247 0.4133499 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E032-H3K9ME3_subsample-5e6.cc.plot.pdf

./E032-H3K9ME3_subsample-5e6.cc.plot.pdf

./E032-H3K9ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E032-H3K9ME3_subsample-5e6.tagAlign.gz 9999412 135 0.128897770518616 35 0.1340938 1500 0.1256322 1.025993 0.3859248 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E037-H3K27AC_merged.cc.plot.pdf

./E037-H3K27AC_merged.cc.plot.pdf

./E037-H3K27AC_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E037-H3K27AC_merged.tagAlign.gz 27665167 235 0.385090936898122 35 0.3562414 1500 0.2859711 1.346608 1.410551 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E037-H3K27AC_subsample-0.1e6.cc.plot.pdf

./E037-H3K27AC_subsample-0.1e6.cc.plot.pdf

./E037-H3K27AC_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E037-H3K27AC_subsample-0.1e6.tagAlign.gz 199990 170 0.00475826820036065 30 0.004201122 1500 0.003440259 1.383113 1.732256 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E037-H3K27AC_subsample-0.25e6.cc.plot.pdf

./E037-H3K27AC_subsample-0.25e6.cc.plot.pdf

./E037-H3K27AC_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E037-H3K27AC_subsample-0.25e6.tagAlign.gz 499975 205 0.0118299061488757 35 0.01072731 1500 0.008562447 1.381603 1.509314 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E037-H3K27AC_subsample-0.5e6.cc.plot.pdf

./E037-H3K27AC_subsample-0.5e6.cc.plot.pdf

./E037-H3K27AC_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E037-H3K27AC_subsample-0.5e6.tagAlign.gz 999938 220 0.0227249357288199 35 0.02111066 1500 0.01685642 1.348147 1.379452 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E037-H3K27AC_subsample-10e6.cc.plot.pdf

./E037-H3K27AC_subsample-10e6.cc.plot.pdf

./E037-H3K27AC_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E037-H3K27AC_subsample-10e6.tagAlign.gz 19998913 235 0.312692471430568 35 0.2892497 1500 0.2322255 1.346504 1.411102 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E037-H3K27AC_subsample-1e6.cc.plot.pdf

./E037-H3K27AC_subsample-1e6.cc.plot.pdf

./E037-H3K27AC_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E037-H3K27AC_subsample-1e6.tagAlign.gz 1999900 230 0.0442795280621109 35 0.04079953 1500 0.03268626 1.354683 1.428927 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E037-H3K27AC_subsample-2.5e6.cc.plot.pdf

./E037-H3K27AC_subsample-2.5e6.cc.plot.pdf

./E037-H3K27AC_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E037-H3K27AC_subsample-2.5e6.tagAlign.gz 4999711 230 0.103432168495835 35 0.09564201 1500 0.07655181 1.351139 1.408071 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E037-H3K27AC_subsample-5e6.cc.plot.pdf

./E037-H3K27AC_subsample-5e6.cc.plot.pdf

./E037-H3K27AC_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E037-H3K27AC_subsample-5e6.tagAlign.gz 9999457 250 0.186378595551911 35 0.172235 1500 0.1383432 1.347219 1.417315 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E037-H3K27AC_subsample-7.5e6.cc.plot.pdf

./E037-H3K27AC_subsample-7.5e6.cc.plot.pdf

./E037-H3K27AC_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E037-H3K27AC_subsample-7.5e6.tagAlign.gz 14999220 250 0.254940916973558 35 0.2357153 1500 0.1892194 1.34733 1.413492 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E037-H3K27ME3_merged.cc.plot.pdf

./E037-H3K27ME3_merged.cc.plot.pdf

./E037-H3K27ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E037-H3K27ME3_merged.tagAlign.gz 37787970 230 0.344813122823473 35 0.3505287 1500 0.3389701 1.017238 0.5055169 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E037-H3K27ME3_subsample-0.1e6.cc.plot.pdf

./E037-H3K27ME3_subsample-0.1e6.cc.plot.pdf

./E037-H3K27ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E037-H3K27ME3_subsample-0.1e6.tagAlign.gz 199993 -350 0.00327070726078192 35 0.003150189 1500 0.003132545 1.044105 7.830644 2 E037-H3K27ME3_subsample-0.1e6.tagAlign.gz 199997 1270 0.00328410278939175 35 0.003186234 1500 0.002943817 1.115593 1.403719 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E037-H3K27ME3_subsample-0.25e6.cc.plot.pdf

./E037-H3K27ME3_subsample-0.25e6.cc.plot.pdf

./E037-H3K27ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E037-H3K27ME3_subsample-0.25e6.tagAlign.gz 499981 -260 0.00713088733258852 35 0.007216343 1500 0.006891557 1.034728 0.7368865 0 E037-H3K27ME3_subsample-0.25e6.tagAlign.gz 499981 405 0.00716118149737705 35 0.007176836 1500 0.006907699 1.036696 0.9418341 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E037-H3K27ME3_subsample-0.5e6.cc.plot.pdf

./E037-H3K27ME3_subsample-0.5e6.cc.plot.pdf

./E037-H3K27ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E037-H3K27ME3_subsample-0.5e6.tagAlign.gz 999969 200 0.0140668026080761 35 0.01419891 1500 0.01374544 1.023379 0.7086762 0 E037-H3K27ME3_subsample-0.5e6.tagAlign.gz 999970 305 0.0139984930702584 35 0.01427847 1500 0.01375214 1.017914 0.4680589 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E037-H3K27ME3_subsample-10e6.cc.plot.pdf

./E037-H3K27ME3_subsample-10e6.cc.plot.pdf

./E037-H3K27ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E037-H3K27ME3_subsample-10e6.tagAlign.gz 19999267 250 0.219266217903713 35 0.2229284 1500 0.2156053 1.016979 0.4999098 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E037-H3K27ME3_subsample-1e6.cc.plot.pdf

./E037-H3K27ME3_subsample-1e6.cc.plot.pdf

./E037-H3K27ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E037-H3K27ME3_subsample-1e6.tagAlign.gz 1999920 235 0.0276906791724121 35 0.02808287 1500 0.02715324 1.019793 0.5781254 0 E037-H3K27ME3_subsample-1e6.tagAlign.gz 1999924 215 0.0276438782231063 35 0.0280308 1500 0.02710439 1.019904 0.5823429 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E037-H3K27ME3_subsample-2.5e6.cc.plot.pdf

./E037-H3K27ME3_subsample-2.5e6.cc.plot.pdf

./E037-H3K27ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E037-H3K27ME3_subsample-2.5e6.tagAlign.gz 4999824 215 0.0660824253727554 35 0.06707181 1500 0.06486453 1.018776 0.5517632 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E037-H3K27ME3_subsample-5e6.cc.plot.pdf

./E037-H3K27ME3_subsample-5e6.cc.plot.pdf

./E037-H3K27ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E037-H3K27ME3_subsample-5e6.tagAlign.gz 9999611 230 0.123707755565089 35 0.1257741 1500 0.1215496 1.017756 0.5108718 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E037-H3K27ME3_subsample-7.5e6.cc.plot.pdf

./E037-H3K27ME3_subsample-7.5e6.cc.plot.pdf

./E037-H3K27ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E037-H3K27ME3_subsample-7.5e6.tagAlign.gz 14999463 230 0.174313675682079 35 0.1771786 1500 0.1713064 1.017555 0.512119 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E037-H3K36ME3_merged.cc.plot.pdf

./E037-H3K36ME3_merged.cc.plot.pdf

./E037-H3K36ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E037-H3K36ME3_merged.tagAlign.gz 57879299 230 0.449290656506761 35 0.4558351 1500 0.4425268 1.015285 0.508246 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E037-H3K36ME3_subsample-0.1e6.cc.plot.pdf

./E037-H3K36ME3_subsample-0.1e6.cc.plot.pdf

./E037-H3K36ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E037-H3K36ME3_subsample-0.1e6.tagAlign.gz 199992 1335 0.00321979906289774 30 0.00311729 1500 0.003025068 1.064372 2.111547 2 E037-H3K36ME3_subsample-0.1e6.tagAlign.gz 199993 1120 0.00322399205694246 35 0.003253968 1500 0.003113958 1.035336 0.785901 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E037-H3K36ME3_subsample-0.25e6.cc.plot.pdf

./E037-H3K36ME3_subsample-0.25e6.cc.plot.pdf

./E037-H3K36ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E037-H3K36ME3_subsample-0.25e6.tagAlign.gz 499986 225 0.0072628259062289 35 0.007211303 1500 0.007111981 1.02121 1.518745 2 E037-H3K36ME3_subsample-0.25e6.tagAlign.gz 499985 300 0.00731164478450246 40 0.007287783 1500 0.007057435 1.03602 1.103591 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E037-H3K36ME3_subsample-0.5e6.cc.plot.pdf

./E037-H3K36ME3_subsample-0.5e6.cc.plot.pdf

./E037-H3K36ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E037-H3K36ME3_subsample-0.5e6.tagAlign.gz 999958 230 0.0142335448102636 35 0.0143518 1500 0.01389466 1.024389 0.7413102 0 E037-H3K36ME3_subsample-0.5e6.tagAlign.gz 999971 275 0.0142695296585388 40 0.01442521 1500 0.01385562 1.029873 0.7266768 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E037-H3K36ME3_subsample-10e6.cc.plot.pdf

./E037-H3K36ME3_subsample-10e6.cc.plot.pdf

./E037-H3K36ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E037-H3K36ME3_subsample-10e6.tagAlign.gz 19999268 235 0.221880148694272 35 0.2250518 1500 0.2185342 1.015311 0.5133687 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E037-H3K36ME3_subsample-1e6.cc.plot.pdf

./E037-H3K36ME3_subsample-1e6.cc.plot.pdf

./E037-H3K36ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E037-H3K36ME3_subsample-1e6.tagAlign.gz 1999923 295 0.0279480242201462 35 0.02817937 1500 0.02751953 1.015571 0.6493928 0 E037-H3K36ME3_subsample-1e6.tagAlign.gz 1999910 230 0.0279829830911257 35 0.02823648 1500 0.02751147 1.017139 0.6503565 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E037-H3K36ME3_subsample-2.5e6.cc.plot.pdf

./E037-H3K36ME3_subsample-2.5e6.cc.plot.pdf

./E037-H3K36ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E037-H3K36ME3_subsample-2.5e6.tagAlign.gz 4999815 220 0.0669176019445125 35 0.06789501 1500 0.06581869 1.016696 0.5292584 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E037-H3K36ME3_subsample-20e6.cc.plot.pdf

./E037-H3K36ME3_subsample-20e6.cc.plot.pdf

./E037-H3K36ME3_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E037-H3K36ME3_subsample-20e6.tagAlign.gz 39998483 230 0.36172049525771 35 0.3669473 1500 0.3562645 1.015315 0.5107303 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E037-H3K36ME3_subsample-5e6.cc.plot.pdf

./E037-H3K36ME3_subsample-5e6.cc.plot.pdf

./E037-H3K36ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E037-H3K36ME3_subsample-5e6.tagAlign.gz 9999642 235 0.125238329560298 35 0.1269902 1500 0.1233221 1.015538 0.5223938 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E037-H3K36ME3_subsample-7.5e6.cc.plot.pdf

./E037-H3K36ME3_subsample-7.5e6.cc.plot.pdf

./E037-H3K36ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E037-H3K36ME3_subsample-7.5e6.tagAlign.gz 14999402 230 0.176343887177831 35 0.1789483 1500 0.1738071 1.014596 0.4934293 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E037-H3K4ME1_merged.cc.plot.pdf

./E037-H3K4ME1_merged.cc.plot.pdf

./E037-H3K4ME1_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E037-H3K4ME1_merged.tagAlign.gz 39563899 240 0.398436899679661 35 0.3999121 1500 0.3721633 1.070597 0.9468381 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E037-H3K4ME1_subsample-0.1e6.cc.plot.pdf

./E037-H3K4ME1_subsample-0.1e6.cc.plot.pdf

./E037-H3K4ME1_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E037-H3K4ME1_subsample-0.1e6.tagAlign.gz 199994 395 0.00370883190397291 30 0.003532507 1500 0.003274608 1.132603 1.683697 2 E037-H3K4ME1_subsample-0.1e6.tagAlign.gz 199994 150 0.00359147049517645 40 0.003545904 1500 0.003212493 1.11797 1.136668 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E037-H3K4ME1_subsample-0.25e6.cc.plot.pdf

./E037-H3K4ME1_subsample-0.25e6.cc.plot.pdf

./E037-H3K4ME1_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E037-H3K4ME1_subsample-0.25e6.tagAlign.gz 499984 210 0.00865847957820616 35 0.008575411 1500 0.007874051 1.099622 1.118438 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E037-H3K4ME1_subsample-0.5e6.cc.plot.pdf

./E037-H3K4ME1_subsample-0.5e6.cc.plot.pdf

./E037-H3K4ME1_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E037-H3K4ME1_subsample-0.5e6.tagAlign.gz 999969 265 0.0169420832254873 35 0.01695865 1500 0.01566536 1.0815 0.9871915 0 E037-H3K4ME1_subsample-0.5e6.tagAlign.gz 999956 185 0.0168990717267852 30 0.01696664 1500 0.01562592 1.081477 0.9496011 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E037-H3K4ME1_subsample-10e6.cc.plot.pdf

./E037-H3K4ME1_subsample-10e6.cc.plot.pdf

./E037-H3K4ME1_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E037-H3K4ME1_subsample-10e6.tagAlign.gz 19999325 250 0.252410029164513 35 0.2533043 1500 0.2356725 1.07102 0.9492792 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E037-H3K4ME1_subsample-1e6.cc.plot.pdf

./E037-H3K4ME1_subsample-1e6.cc.plot.pdf

./E037-H3K4ME1_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E037-H3K4ME1_subsample-1e6.tagAlign.gz 1999949 255 0.0330816190989864 35 0.0331533 1500 0.03082834 1.073091 0.9691706 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E037-H3K4ME1_subsample-2.5e6.cc.plot.pdf

./E037-H3K4ME1_subsample-2.5e6.cc.plot.pdf

./E037-H3K4ME1_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E037-H3K4ME1_subsample-2.5e6.tagAlign.gz 4999845 280 0.0784421664716562 35 0.07877647 1500 0.0731886 1.071781 0.940173 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E037-H3K4ME1_subsample-5e6.cc.plot.pdf

./E037-H3K4ME1_subsample-5e6.cc.plot.pdf

./E037-H3K4ME1_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E037-H3K4ME1_subsample-5e6.tagAlign.gz 9999664 235 0.145168223669642 35 0.1453976 1500 0.1354594 1.071673 0.976921 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E037-H3K4ME1_subsample-7.5e6.cc.plot.pdf

./E037-H3K4ME1_subsample-7.5e6.cc.plot.pdf

./E037-H3K4ME1_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E037-H3K4ME1_subsample-7.5e6.tagAlign.gz 14999482 225 0.202553059801646 35 0.2031996 1500 0.1891009 1.071137 0.9541441 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E037-H3K4ME3_merged.cc.plot.pdf

./E037-H3K4ME3_merged.cc.plot.pdf

./E037-H3K4ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E037-H3K4ME3_merged.tagAlign.gz 54819371 220 0.451106521328951 35 0.4517307 1500 0.4203634 1.073135 0.9801013 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E037-H3K4ME3_subsample-0.1e6.cc.plot.pdf

./E037-H3K4ME3_subsample-0.1e6.cc.plot.pdf

./E037-H3K4ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E037-H3K4ME3_subsample-0.1e6.tagAlign.gz 199988 235 0.00336671763014291 40 0.003288766 1500 0.003158374 1.065966 1.597821 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E037-H3K4ME3_subsample-0.25e6.cc.plot.pdf

./E037-H3K4ME3_subsample-0.25e6.cc.plot.pdf

./E037-H3K4ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E037-H3K4ME3_subsample-0.25e6.tagAlign.gz 499978 245 0.00779668956673552 35 0.007751796 1500 0.007029543 1.109132 1.062157 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E037-H3K4ME3_subsample-0.5e6.cc.plot.pdf

./E037-H3K4ME3_subsample-0.5e6.cc.plot.pdf

./E037-H3K4ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E037-H3K4ME3_subsample-0.5e6.tagAlign.gz 999944 275 0.0153691490416537 35 0.01544951 1500 0.0142435 1.079029 0.9333681 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E037-H3K4ME3_subsample-10e6.cc.plot.pdf

./E037-H3K4ME3_subsample-10e6.cc.plot.pdf

./E037-H3K4ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E037-H3K4ME3_subsample-10e6.tagAlign.gz 19998937 220 0.234175357382455 35 0.2370054 1500 0.2178297 1.075039 0.8524137 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E037-H3K4ME3_subsample-1e6.cc.plot.pdf

./E037-H3K4ME3_subsample-1e6.cc.plot.pdf

./E037-H3K4ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E037-H3K4ME3_subsample-1e6.tagAlign.gz 1999877 210 0.0301427280845825 35 0.03042147 1500 0.02795437 1.078283 0.8870167 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E037-H3K4ME3_subsample-2.5e6.cc.plot.pdf

./E037-H3K4ME3_subsample-2.5e6.cc.plot.pdf

./E037-H3K4ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E037-H3K4ME3_subsample-2.5e6.tagAlign.gz 4999734 240 0.0718659401494667 35 0.07267089 1500 0.06674829 1.076671 0.864088 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E037-H3K4ME3_subsample-20e6.cc.plot.pdf

./E037-H3K4ME3_subsample-20e6.cc.plot.pdf

./E037-H3K4ME3_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E037-H3K4ME3_subsample-20e6.tagAlign.gz 39997947 225 0.376454618928225 35 0.3791862 1500 0.3505107 1.074017 0.9047402 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E037-H3K4ME3_subsample-5e6.cc.plot.pdf

./E037-H3K4ME3_subsample-5e6.cc.plot.pdf

./E037-H3K4ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E037-H3K4ME3_subsample-5e6.tagAlign.gz 9999489 225 0.133482614484552 35 0.1349919 1500 0.1240328 1.076188 0.8622803 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E037-H3K4ME3_subsample-7.5e6.cc.plot.pdf

./E037-H3K4ME3_subsample-7.5e6.cc.plot.pdf

./E037-H3K4ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E037-H3K4ME3_subsample-7.5e6.tagAlign.gz 14999238 215 0.187171976790109 35 0.189468 1500 0.1739616 1.075938 0.8519307 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E037-H3K9ME3_merged.cc.plot.pdf

./E037-H3K9ME3_merged.cc.plot.pdf

./E037-H3K9ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E037-H3K9ME3_merged.tagAlign.gz 49079251 225 0.405094485744308 35 0.4210818 1500 0.3986421 1.016186 0.2875439 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E037-H3K9ME3_subsample-0.1e6.cc.plot.pdf

./E037-H3K9ME3_subsample-0.1e6.cc.plot.pdf

./E037-H3K9ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E037-H3K9ME3_subsample-0.1e6.tagAlign.gz 199996 510 0.00325138521974008 30 0.003112677 1500 0.002990943 1.087077 2.139444 2 E037-H3K9ME3_subsample-0.1e6.tagAlign.gz 199992 1140 0.00329175809582759 30 0.003160899 1500 0.003065096 1.073949 2.365917 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E037-H3K9ME3_subsample-0.25e6.cc.plot.pdf

./E037-H3K9ME3_subsample-0.25e6.cc.plot.pdf

./E037-H3K9ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E037-H3K9ME3_subsample-0.25e6.tagAlign.gz 499979 50 0.00725848478624241 35 0.007422967 1500 0.006994693 1.037713 0.6159421 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E037-H3K9ME3_subsample-0.5e6.cc.plot.pdf

./E037-H3K9ME3_subsample-0.5e6.cc.plot.pdf

./E037-H3K9ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E037-H3K9ME3_subsample-0.5e6.tagAlign.gz 999960 55 0.0142414950819887 35 0.01479694 1500 0.01378946 1.032781 0.4486784 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E037-H3K9ME3_subsample-10e6.cc.plot.pdf

./E037-H3K9ME3_subsample-10e6.cc.plot.pdf

./E037-H3K9ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E037-H3K9ME3_subsample-10e6.tagAlign.gz 19999137 220 0.220210827812636 35 0.2291406 1500 0.2167244 1.016087 0.2807979 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E037-H3K9ME3_subsample-1e6.cc.plot.pdf

./E037-H3K9ME3_subsample-1e6.cc.plot.pdf

./E037-H3K9ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E037-H3K9ME3_subsample-1e6.tagAlign.gz 1999906 215 0.0279423606148726 35 0.02891468 1500 0.02736761 1.021001 0.3715082 -1 E037-H3K9ME3_subsample-1e6.tagAlign.gz 1999913 210 0.0279337512535432 35 0.02895928 1500 0.02738407 1.020073 0.3489576 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E037-H3K9ME3_subsample-2.5e6.cc.plot.pdf

./E037-H3K9ME3_subsample-2.5e6.cc.plot.pdf

./E037-H3K9ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E037-H3K9ME3_subsample-2.5e6.tagAlign.gz 4999765 230 0.066712725007838 35 0.06922623 1500 0.06552359 1.018148 0.3211585 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E037-H3K9ME3_subsample-20e6.cc.plot.pdf

./E037-H3K9ME3_subsample-20e6.cc.plot.pdf

./E037-H3K9ME3_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E037-H3K9ME3_subsample-20e6.tagAlign.gz 39998291 225 0.358117786662578 35 0.372316 1500 0.352373 1.016303 0.2880611 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E037-H3K9ME3_subsample-5e6.cc.plot.pdf

./E037-H3K9ME3_subsample-5e6.cc.plot.pdf

./E037-H3K9ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E037-H3K9ME3_subsample-5e6.tagAlign.gz 9999587 220 0.12447078814334 35 0.1295558 1500 0.1224771 1.016278 0.2816479 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E037-H3K9ME3_subsample-7.5e6.cc.plot.pdf

./E037-H3K9ME3_subsample-7.5e6.cc.plot.pdf

./E037-H3K9ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E037-H3K9ME3_subsample-7.5e6.tagAlign.gz 14999310 225 0.175262561618823 35 0.1822881 1500 0.1723853 1.016691 0.2905534 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E038-H3K27AC_merged.cc.plot.pdf

./E038-H3K27AC_merged.cc.plot.pdf

./E038-H3K27AC_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E038-H3K27AC_merged.tagAlign.gz 11692197 245 0.249613581932976 35 0.2123598 1500 0.1480928 1.685522 1.579672 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E038-H3K27AC_subsample-0.1e6.cc.plot.pdf

./E038-H3K27AC_subsample-0.1e6.cc.plot.pdf

./E038-H3K27AC_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E038-H3K27AC_subsample-0.1e6.tagAlign.gz 199980 250 0.00633895437353594 30 0.005007803 1500 0.003504636 1.808734 1.885564 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E038-H3K27AC_subsample-0.25e6.cc.plot.pdf

./E038-H3K27AC_subsample-0.25e6.cc.plot.pdf

./E038-H3K27AC_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E038-H3K27AC_subsample-0.25e6.tagAlign.gz 499954 270 0.0146695497691406 35 0.01216323 1500 0.008554087 1.714917 1.694438 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E038-H3K27AC_subsample-0.5e6.cc.plot.pdf

./E038-H3K27AC_subsample-0.5e6.cc.plot.pdf

./E038-H3K27AC_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E038-H3K27AC_subsample-0.5e6.tagAlign.gz 999912 240 0.0290124844030256 40 0.02411373 1500 0.01687126 1.719639 1.676392 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E038-H3K27AC_subsample-1e6.cc.plot.pdf

./E038-H3K27AC_subsample-1e6.cc.plot.pdf

./E038-H3K27AC_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E038-H3K27AC_subsample-1e6.tagAlign.gz 1999826 265 0.0554379591756 35 0.04688888 1500 0.03277447 1.691498 1.605698 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E038-H3K27AC_subsample-2.5e6.cc.plot.pdf

./E038-H3K27AC_subsample-2.5e6.cc.plot.pdf

./E038-H3K27AC_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E038-H3K27AC_subsample-2.5e6.tagAlign.gz 4999604 260 0.126796551959402 35 0.1079813 1500 0.07512444 1.68782 1.572641 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E038-H3K27AC_subsample-5e6.cc.plot.pdf

./E038-H3K27AC_subsample-5e6.cc.plot.pdf

./E038-H3K27AC_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E038-H3K27AC_subsample-5e6.tagAlign.gz 9999182 265 0.222257733367108 35 0.1890735 1500 0.1318238 1.686021 1.57964 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E038-H3K27ME3_merged.cc.plot.pdf

./E038-H3K27ME3_merged.cc.plot.pdf

./E038-H3K27ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E038-H3K27ME3_merged.tagAlign.gz 34552847 235 0.325306758557996 35 0.331401 1500 0.3191175 1.019395 0.5038711 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E038-H3K27ME3_subsample-0.1e6.cc.plot.pdf

./E038-H3K27ME3_subsample-0.1e6.cc.plot.pdf

./E038-H3K27ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E038-H3K27ME3_subsample-0.1e6.tagAlign.gz 199990 120 0.00327400671774784 30 0.003087749 1500 0.003137081 1.043647 -2.775578 NA
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E038-H3K27ME3_subsample-0.25e6.cc.plot.pdf

./E038-H3K27ME3_subsample-0.25e6.cc.plot.pdf

./E038-H3K27ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E038-H3K27ME3_subsample-0.25e6.tagAlign.gz 499972 355 0.0071595952507087 35 0.007276903 1500 0.006952038 1.029856 0.6389035 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E038-H3K27ME3_subsample-0.5e6.cc.plot.pdf

./E038-H3K27ME3_subsample-0.5e6.cc.plot.pdf

./E038-H3K27ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E038-H3K27ME3_subsample-0.5e6.tagAlign.gz 999949 225 0.0141095722409685 35 0.01425152 1500 0.01382576 1.020528 0.6665963 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E038-H3K27ME3_subsample-10e6.cc.plot.pdf

./E038-H3K27ME3_subsample-10e6.cc.plot.pdf

./E038-H3K27ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E038-H3K27ME3_subsample-10e6.tagAlign.gz 19998860 235 0.219585392395393 35 0.2236112 1500 0.2153781 1.019535 0.5110247 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E038-H3K27ME3_subsample-1e6.cc.plot.pdf

./E038-H3K27ME3_subsample-1e6.cc.plot.pdf

./E038-H3K27ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E038-H3K27ME3_subsample-1e6.tagAlign.gz 1999897 175 0.0276450387745748 35 0.02814716 1500 0.02718975 1.016745 0.4755416 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E038-H3K27ME3_subsample-2.5e6.cc.plot.pdf

./E038-H3K27ME3_subsample-2.5e6.cc.plot.pdf

./E038-H3K27ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E038-H3K27ME3_subsample-2.5e6.tagAlign.gz 4999704 235 0.0662970270094046 35 0.06739998 1500 0.0650119 1.019768 0.5381409 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E038-H3K27ME3_subsample-5e6.cc.plot.pdf

./E038-H3K27ME3_subsample-5e6.cc.plot.pdf

./E038-H3K27ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E038-H3K27ME3_subsample-5e6.tagAlign.gz 9999434 235 0.124008670439742 35 0.1262196 1500 0.1215798 1.019977 0.5234819 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E038-H3K27ME3_subsample-7.5e6.cc.plot.pdf

./E038-H3K27ME3_subsample-7.5e6.cc.plot.pdf

./E038-H3K27ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E038-H3K27ME3_subsample-7.5e6.tagAlign.gz 14999131 245 0.17465648116567 35 0.1778657 1500 0.1713094 1.019538 0.5105157 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E038-H3K36ME3_merged.cc.plot.pdf

./E038-H3K36ME3_merged.cc.plot.pdf

./E038-H3K36ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E038-H3K36ME3_merged.tagAlign.gz 46515475 255 0.39856912030743 35 0.4042068 1500 0.3920742 1.016565 0.5353281 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E038-H3K36ME3_subsample-0.1e6.cc.plot.pdf

./E038-H3K36ME3_subsample-0.1e6.cc.plot.pdf

./E038-H3K36ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E038-H3K36ME3_subsample-0.1e6.tagAlign.gz 199967 -220 0.00323789477207654 40 0.003133983 1500 0.003147813 1.028617 -6.513556 NA
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E038-H3K36ME3_subsample-0.25e6.cc.plot.pdf

./E038-H3K36ME3_subsample-0.25e6.cc.plot.pdf

./E038-H3K36ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E038-H3K36ME3_subsample-0.25e6.tagAlign.gz 499924 295 0.00741970337697917 35 0.007479192 1500 0.007141684 1.038929 0.8237419 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E038-H3K36ME3_subsample-0.5e6.cc.plot.pdf

./E038-H3K36ME3_subsample-0.5e6.cc.plot.pdf

./E038-H3K36ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E038-H3K36ME3_subsample-0.5e6.tagAlign.gz 999853 220 0.0144798637305546 35 0.01476757 1500 0.01416246 1.022412 0.5245409 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E038-H3K36ME3_subsample-10e6.cc.plot.pdf

./E038-H3K36ME3_subsample-10e6.cc.plot.pdf

./E038-H3K36ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E038-H3K36ME3_subsample-10e6.tagAlign.gz 19997250 265 0.224331148934294 35 0.2287531 1500 0.2201567 1.018961 0.4856029 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E038-H3K36ME3_subsample-1e6.cc.plot.pdf

./E038-H3K36ME3_subsample-1e6.cc.plot.pdf

./E038-H3K36ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E038-H3K36ME3_subsample-1e6.tagAlign.gz 1999727 270 0.0284786251838377 35 0.02886921 1500 0.02794975 1.018922 0.5752008 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E038-H3K36ME3_subsample-2.5e6.cc.plot.pdf

./E038-H3K36ME3_subsample-2.5e6.cc.plot.pdf

./E038-H3K36ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E038-H3K36ME3_subsample-2.5e6.tagAlign.gz 4999292 255 0.0679659784070063 35 0.06928144 1500 0.06668003 1.019285 0.4943276 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E038-H3K36ME3_subsample-5e6.cc.plot.pdf

./E038-H3K36ME3_subsample-5e6.cc.plot.pdf

./E038-H3K36ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E038-H3K36ME3_subsample-5e6.tagAlign.gz 9998598 260 0.126894621689187 35 0.1295309 1500 0.1245887 1.018508 0.4665725 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E038-H3K36ME3_subsample-7.5e6.cc.plot.pdf

./E038-H3K36ME3_subsample-7.5e6.cc.plot.pdf

./E038-H3K36ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E038-H3K36ME3_subsample-7.5e6.tagAlign.gz 14997856 260 0.178593194073969 35 0.1821198 1500 0.1752944 1.018819 0.4833089 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E038-H3K4ME1_merged.cc.plot.pdf

./E038-H3K4ME1_merged.cc.plot.pdf

./E038-H3K4ME1_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E038-H3K4ME1_merged.tagAlign.gz 36377053 235 0.366278114125888 35 0.3691051 1500 0.3459219 1.058846 0.878058 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E038-H3K4ME1_subsample-0.1e6.cc.plot.pdf

./E038-H3K4ME1_subsample-0.1e6.cc.plot.pdf

./E038-H3K4ME1_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E038-H3K4ME1_subsample-0.1e6.tagAlign.gz 199989 85 0.00342704831886278 35 0.003381305 1500 0.003119726 1.098509 1.174874 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E038-H3K4ME1_subsample-0.25e6.cc.plot.pdf

./E038-H3K4ME1_subsample-0.25e6.cc.plot.pdf

./E038-H3K4ME1_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E038-H3K4ME1_subsample-0.25e6.tagAlign.gz 499963 160 0.00823835498601898 30 0.008126384 1500 0.007515349 1.096204 1.183247 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E038-H3K4ME1_subsample-0.5e6.cc.plot.pdf

./E038-H3K4ME1_subsample-0.5e6.cc.plot.pdf

./E038-H3K4ME1_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E038-H3K4ME1_subsample-0.5e6.tagAlign.gz 999940 305 0.0159892663364619 35 0.01598754 1500 0.01498841 1.066775 1.001726 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E038-H3K4ME1_subsample-10e6.cc.plot.pdf

./E038-H3K4ME1_subsample-10e6.cc.plot.pdf

./E038-H3K4ME1_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E038-H3K4ME1_subsample-10e6.tagAlign.gz 19998742 240 0.242537459286468 35 0.2443028 1500 0.2289431 1.059379 0.8850683 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E038-H3K4ME1_subsample-1e6.cc.plot.pdf

./E038-H3K4ME1_subsample-1e6.cc.plot.pdf

./E038-H3K4ME1_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E038-H3K4ME1_subsample-1e6.tagAlign.gz 1999850 245 0.0314721370721083 35 0.03163896 1500 0.02957483 1.064153 0.919179 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E038-H3K4ME1_subsample-2.5e6.cc.plot.pdf

./E038-H3K4ME1_subsample-2.5e6.cc.plot.pdf

./E038-H3K4ME1_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E038-H3K4ME1_subsample-2.5e6.tagAlign.gz 4999710 230 0.0747228388051171 35 0.07524792 1500 0.07049398 1.059989 0.8895477 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E038-H3K4ME1_subsample-5e6.cc.plot.pdf

./E038-H3K4ME1_subsample-5e6.cc.plot.pdf

./E038-H3K4ME1_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E038-H3K4ME1_subsample-5e6.tagAlign.gz 9999392 240 0.138635955286722 35 0.1396252 1500 0.1307958 1.059942 0.8879622 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E038-H3K4ME3_merged.cc.plot.pdf

./E038-H3K4ME3_merged.cc.plot.pdf

./E038-H3K4ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E038-H3K4ME3_merged.tagAlign.gz 50504713 225 0.445252972159227 35 0.4435374 1500 0.4038906 1.10241 1.043271 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E038-H3K4ME3_subsample-0.1e6.cc.plot.pdf

./E038-H3K4ME3_subsample-0.1e6.cc.plot.pdf

./E038-H3K4ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E038-H3K4ME3_subsample-0.1e6.tagAlign.gz 199995 270 0.0034003270475641 30 0.003371244 1500 0.003205804 1.060679 1.175791 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E038-H3K4ME3_subsample-0.25e6.cc.plot.pdf

./E038-H3K4ME3_subsample-0.25e6.cc.plot.pdf

./E038-H3K4ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E038-H3K4ME3_subsample-0.25e6.tagAlign.gz 499980 215 0.00816664334877636 30 0.008119058 1500 0.007202845 1.133808 1.051937 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E038-H3K9ME3_merged.cc.plot.pdf

./E038-H3K9ME3_merged.cc.plot.pdf

./E038-H3K9ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E038-H3K9ME3_merged.tagAlign.gz 41727616 225 0.366935776351287 35 0.3834251 1500 0.3605392 1.017742 0.2794994 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E038-H3K9ME3_subsample-0.1e6.cc.plot.pdf

./E038-H3K9ME3_subsample-0.1e6.cc.plot.pdf

./E038-H3K9ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E038-H3K9ME3_subsample-0.1e6.tagAlign.gz 199983 1410 0.00326959601455431 35 0.003146059 1500 0.003070665 1.064784 2.638549 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E038-H3K9ME3_subsample-0.25e6.cc.plot.pdf

./E038-H3K9ME3_subsample-0.25e6.cc.plot.pdf

./E038-H3K9ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E038-H3K9ME3_subsample-0.25e6.tagAlign.gz 499974 175 0.00721661882450632 35 0.007536821 1500 0.00696251 1.036497 0.4424589 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E038-H3K9ME3_subsample-0.5e6.cc.plot.pdf

./E038-H3K9ME3_subsample-0.5e6.cc.plot.pdf

./E038-H3K9ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E038-H3K9ME3_subsample-0.5e6.tagAlign.gz 999959 55 0.0142541279577111 35 0.01464504 1500 0.01392529 1.023614 0.4568767 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E038-H3K9ME3_subsample-7.5e6.cc.plot.pdf

./E038-H3K9ME3_subsample-7.5e6.cc.plot.pdf

./E038-H3K9ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E038-H3K9ME3_subsample-7.5e6.tagAlign.gz 14999281 220 0.175150177550443 35 0.183204 1500 0.1720488 1.018026 0.2780229 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E039-H3K27AC_merged.cc.plot.pdf

./E039-H3K27AC_merged.cc.plot.pdf

./E039-H3K27AC_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E039-H3K27AC_merged.tagAlign.gz 13027795 210 0.365904270512136 40 0.3149104 1500 0.2160937 1.693267 1.516045 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E039-H3K27AC_subsample-0.1e6.cc.plot.pdf

./E039-H3K27AC_subsample-0.1e6.cc.plot.pdf

./E039-H3K27AC_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E039-H3K27AC_subsample-0.1e6.tagAlign.gz 199996 255 0.00885288460878791 35 0.007454238 1500 0.004944126 1.790586 1.557205 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E039-H3K27AC_subsample-0.25e6.cc.plot.pdf

./E039-H3K27AC_subsample-0.25e6.cc.plot.pdf

./E039-H3K27AC_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E039-H3K27AC_subsample-0.25e6.tagAlign.gz 499991 220 0.0210958980558862 30 0.01850993 1500 0.01228927 1.716611 1.415707 1 E039-H3K27AC_subsample-0.25e6.tagAlign.gz 499985 240 0.0212934547247113 40 0.01828938 1500 0.0125126 1.701761 1.520026 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E039-H3K27AC_subsample-0.5e6.cc.plot.pdf

./E039-H3K27AC_subsample-0.5e6.cc.plot.pdf

./E039-H3K27AC_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E039-H3K27AC_subsample-0.5e6.tagAlign.gz 999975 230 0.0412069353301203 40 0.03539006 1500 0.02396652 1.719354 1.509201 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E039-H3K27AC_subsample-1e6.cc.plot.pdf

./E039-H3K27AC_subsample-1e6.cc.plot.pdf

./E039-H3K27AC_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E039-H3K27AC_subsample-1e6.tagAlign.gz 1999965 215 0.079457608406416 40 0.06850616 1500 0.04674589 1.699777 1.503277 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E039-H3K27AC_subsample-2.5e6.cc.plot.pdf

./E039-H3K27AC_subsample-2.5e6.cc.plot.pdf

./E039-H3K27AC_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E039-H3K27AC_subsample-2.5e6.tagAlign.gz 4999927 205 0.17776263076205 35 0.1529824 1500 0.104858 1.69527 1.51492 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E039-H3K27AC_subsample-5e6.cc.plot.pdf

./E039-H3K27AC_subsample-5e6.cc.plot.pdf

./E039-H3K27AC_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E039-H3K27AC_subsample-5e6.tagAlign.gz 9999822 210 0.304902797116382 40 0.2626068 1500 0.1801456 1.692536 1.512919 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E039-H3K27ME3_merged.cc.plot.pdf

./E039-H3K27ME3_merged.cc.plot.pdf

./E039-H3K27ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E039-H3K27ME3_merged.tagAlign.gz 23952256 225 0.252617831128456 35 0.2593998 1500 0.2470702 1.022454 0.4499448 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E039-H3K27ME3_subsample-0.1e6.cc.plot.pdf

./E039-H3K27ME3_subsample-0.1e6.cc.plot.pdf

./E039-H3K27ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E039-H3K27ME3_subsample-0.1e6.tagAlign.gz 199998 265 0.00320688422392352 40 0.003199056 1500 0.003079475 1.041374 1.065465 1 E039-H3K27ME3_subsample-0.1e6.tagAlign.gz 199998 125 0.0031874161140004 35 0.003125277 1500 0.003003526 1.061225 1.510383 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E039-H3K27ME3_subsample-0.25e6.cc.plot.pdf

./E039-H3K27ME3_subsample-0.25e6.cc.plot.pdf

./E039-H3K27ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E039-H3K27ME3_subsample-0.25e6.tagAlign.gz 499994 185 0.00722636009323126 40 0.0073238 1500 0.006967668 1.037127 0.726394 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E039-H3K27ME3_subsample-0.5e6.cc.plot.pdf

./E039-H3K27ME3_subsample-0.5e6.cc.plot.pdf

./E039-H3K27ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E039-H3K27ME3_subsample-0.5e6.tagAlign.gz 999987 245 0.0141862960207046 35 0.01443588 1500 0.01384133 1.024923 0.5802136 0 E039-H3K27ME3_subsample-0.5e6.tagAlign.gz 999982 180 0.0141617113231459 35 0.0145338 1500 0.01378329 1.027455 0.5042204 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E039-H3K27ME3_subsample-10e6.cc.plot.pdf

./E039-H3K27ME3_subsample-10e6.cc.plot.pdf

./E039-H3K27ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E039-H3K27ME3_subsample-10e6.tagAlign.gz 19999786 220 0.220474522284239 35 0.2263774 1500 0.2156053 1.022584 0.4520233 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E039-H3K27ME3_subsample-1e6.cc.plot.pdf

./E039-H3K27ME3_subsample-1e6.cc.plot.pdf

./E039-H3K27ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E039-H3K27ME3_subsample-1e6.tagAlign.gz 1999984 230 0.0278393061159081 35 0.0285012 1500 0.02718596 1.024033 0.4967535 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E039-H3K27ME3_subsample-2.5e6.cc.plot.pdf

./E039-H3K27ME3_subsample-2.5e6.cc.plot.pdf

./E039-H3K27ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E039-H3K27ME3_subsample-2.5e6.tagAlign.gz 4999948 200 0.0665762087090661 35 0.0683405 1500 0.06514908 1.021906 0.4471771 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E039-H3K27ME3_subsample-5e6.cc.plot.pdf

./E039-H3K27ME3_subsample-5e6.cc.plot.pdf

./E039-H3K27ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E039-H3K27ME3_subsample-5e6.tagAlign.gz 9999890 225 0.124533369707446 35 0.1278707 1500 0.1217662 1.022725 0.4533047 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E039-H3K27ME3_subsample-7.5e6.cc.plot.pdf

./E039-H3K27ME3_subsample-7.5e6.cc.plot.pdf

./E039-H3K27ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E039-H3K27ME3_subsample-7.5e6.tagAlign.gz 14999820 215 0.175428984945763 35 0.1801088 1500 0.1715027 1.022893 0.4562168 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E039-H3K36ME3_merged.cc.plot.pdf

./E039-H3K36ME3_merged.cc.plot.pdf

./E039-H3K36ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E039-H3K36ME3_merged.tagAlign.gz 42674919 220 0.392269440676468 35 0.4002929 1500 0.3825321 1.025455 0.5482503 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E039-H3K36ME3_subsample-0.1e6.cc.plot.pdf

./E039-H3K36ME3_subsample-0.1e6.cc.plot.pdf

./E039-H3K36ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E039-H3K36ME3_subsample-0.1e6.tagAlign.gz 199998 700 0.00335672504025975 35 0.003394379 1500 0.003185801 1.053652 0.8194715 0 E039-H3K36ME3_subsample-0.1e6.tagAlign.gz 200000 225 0.00335922254766347 30 0.003298145 1500 0.003221582 1.042724 1.797753 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E039-H3K36ME3_subsample-0.25e6.cc.plot.pdf

./E039-H3K36ME3_subsample-0.25e6.cc.plot.pdf

./E039-H3K36ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E039-H3K36ME3_subsample-0.25e6.tagAlign.gz 499998 265 0.00780867958547436 30 0.007856441 1500 0.007574595 1.030904 0.8305411 0 E039-H3K36ME3_subsample-0.25e6.tagAlign.gz 499992 255 0.00784822886574238 35 0.007752818 1500 0.007451873 1.053189 1.317038 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E039-H3K36ME3_subsample-0.5e6.cc.plot.pdf

./E039-H3K36ME3_subsample-0.5e6.cc.plot.pdf

./E039-H3K36ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E039-H3K36ME3_subsample-0.5e6.tagAlign.gz 999992 255 0.0154113887976284 35 0.01555838 1500 0.01488822 1.03514 0.7806624 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E039-H3K36ME3_subsample-10e6.cc.plot.pdf

./E039-H3K36ME3_subsample-10e6.cc.plot.pdf

./E039-H3K36ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E039-H3K36ME3_subsample-10e6.tagAlign.gz 19999828 215 0.234346678136167 35 0.2391145 1500 0.2284877 1.025642 0.5513403 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E039-H3K36ME3_subsample-1e6.cc.plot.pdf

./E039-H3K36ME3_subsample-1e6.cc.plot.pdf

./E039-H3K36ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E039-H3K36ME3_subsample-1e6.tagAlign.gz 1999979 220 0.0301467431724038 35 0.03065177 1500 0.0292753 1.029767 0.6330986 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E039-H3K36ME3_subsample-2.5e6.cc.plot.pdf

./E039-H3K36ME3_subsample-2.5e6.cc.plot.pdf

./E039-H3K36ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E039-H3K36ME3_subsample-2.5e6.tagAlign.gz 4999964 190 0.0717669049791672 35 0.07324033 1500 0.06992396 1.026356 0.5557112 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E039-H3K36ME3_subsample-20e6.cc.plot.pdf

./E039-H3K36ME3_subsample-20e6.cc.plot.pdf

./E039-H3K36ME3_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E039-H3K36ME3_subsample-20e6.tagAlign.gz 39999659 220 0.377229953946781 35 0.384941 1500 0.3678514 1.025495 0.5487858 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E039-H3K36ME3_subsample-5e6.cc.plot.pdf

./E039-H3K36ME3_subsample-5e6.cc.plot.pdf

./E039-H3K36ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E039-H3K36ME3_subsample-5e6.tagAlign.gz 9999921 225 0.133452626654172 35 0.1360152 1500 0.130084 1.025896 0.5679514 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E039-H3K36ME3_subsample-7.5e6.cc.plot.pdf

./E039-H3K36ME3_subsample-7.5e6.cc.plot.pdf

./E039-H3K36ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E039-H3K36ME3_subsample-7.5e6.tagAlign.gz 14999878 220 0.187171120078379 35 0.1909362 1500 0.1824261 1.026011 0.5575737 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E039-H3K4ME1_merged.cc.plot.pdf

./E039-H3K4ME1_merged.cc.plot.pdf

./E039-H3K4ME1_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E039-H3K4ME1_merged.tagAlign.gz 33496639 220 0.356504517417683 35 0.3591297 1500 0.3345316 1.065683 0.8932772 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E039-H3K4ME1_subsample-0.1e6.cc.plot.pdf

./E039-H3K4ME1_subsample-0.1e6.cc.plot.pdf

./E039-H3K4ME1_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E039-H3K4ME1_subsample-0.1e6.tagAlign.gz 199998 -120 0.00360398502901184 40 0.003433139 1500 0.003377892 1.066933 4.092452 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E039-H3K4ME1_subsample-0.25e6.cc.plot.pdf

./E039-H3K4ME1_subsample-0.25e6.cc.plot.pdf

./E039-H3K4ME1_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E039-H3K4ME1_subsample-0.25e6.tagAlign.gz 499994 255 0.00851273887813159 30 0.00850076 1500 0.007795039 1.092071 1.016974 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E039-H3K4ME1_subsample-0.5e6.cc.plot.pdf

./E039-H3K4ME1_subsample-0.5e6.cc.plot.pdf

./E039-H3K4ME1_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E039-H3K4ME1_subsample-0.5e6.tagAlign.gz 999990 245 0.0166612737794476 30 0.01660189 1500 0.0156196 1.06669 1.060449 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E039-H3K4ME1_subsample-10e6.cc.plot.pdf

./E039-H3K4ME1_subsample-10e6.cc.plot.pdf

./E039-H3K4ME1_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E039-H3K4ME1_subsample-10e6.tagAlign.gz 19999774 220 0.249645251095201 35 0.2515044 1500 0.2342027 1.065937 0.8925435 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E039-H3K4ME1_subsample-1e6.cc.plot.pdf

./E039-H3K4ME1_subsample-1e6.cc.plot.pdf

./E039-H3K4ME1_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E039-H3K4ME1_subsample-1e6.tagAlign.gz 1999979 205 0.0326405882349066 35 0.03273321 1500 0.0306724 1.064168 0.9550554 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E039-H3K4ME1_subsample-2.5e6.cc.plot.pdf

./E039-H3K4ME1_subsample-2.5e6.cc.plot.pdf

./E039-H3K4ME1_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E039-H3K4ME1_subsample-2.5e6.tagAlign.gz 4999954 205 0.0775184473462647 35 0.0779953 1500 0.07263056 1.067298 0.9111143 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E039-H3K4ME1_subsample-5e6.cc.plot.pdf

./E039-H3K4ME1_subsample-5e6.cc.plot.pdf

./E039-H3K4ME1_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E039-H3K4ME1_subsample-5e6.tagAlign.gz 9999891 220 0.143371468861419 35 0.1443919 1500 0.1343062 1.067497 0.8988206 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E039-H3K4ME1_subsample-7.5e6.cc.plot.pdf

./E039-H3K4ME1_subsample-7.5e6.cc.plot.pdf

./E039-H3K4ME1_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E039-H3K4ME1_subsample-7.5e6.tagAlign.gz 14999832 220 0.20015145967695 35 0.2014662 1500 0.187691 1.066388 0.904558 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E039-H3K4ME3_merged.cc.plot.pdf

./E039-H3K4ME3_merged.cc.plot.pdf

./E039-H3K4ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E039-H3K4ME3_merged.tagAlign.gz 22287742 220 0.342335749688475 35 0.3312351 1500 0.2426993 1.410535 1.12538 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E039-H3K4ME3_subsample-0.1e6.cc.plot.pdf

./E039-H3K4ME3_subsample-0.1e6.cc.plot.pdf

./E039-H3K4ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E039-H3K4ME3_subsample-0.1e6.tagAlign.gz 199998 210 0.00522241750461393 35 0.00485442 1500 0.003514985 1.485758 1.274741 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E039-H3K4ME3_subsample-0.25e6.cc.plot.pdf

./E039-H3K4ME3_subsample-0.25e6.cc.plot.pdf

./E039-H3K4ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E039-H3K4ME3_subsample-0.25e6.tagAlign.gz 499993 230 0.0121658111474003 30 0.01149876 1500 0.008360272 1.455193 1.21254 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E039-H3K4ME3_subsample-0.5e6.cc.plot.pdf

./E039-H3K4ME3_subsample-0.5e6.cc.plot.pdf

./E039-H3K4ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E039-H3K4ME3_subsample-0.5e6.tagAlign.gz 999992 225 0.0236791868958979 35 0.02294248 1500 0.01657255 1.428819 1.115653 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E039-H3K4ME3_subsample-10e6.cc.plot.pdf

./E039-H3K4ME3_subsample-10e6.cc.plot.pdf

./E039-H3K4ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E039-H3K4ME3_subsample-10e6.tagAlign.gz 19999802 215 0.318911840381027 35 0.3085947 1500 0.226045 1.410833 1.12498 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E039-H3K4ME3_subsample-1e6.cc.plot.pdf

./E039-H3K4ME3_subsample-1e6.cc.plot.pdf

./E039-H3K4ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E039-H3K4ME3_subsample-1e6.tagAlign.gz 1999983 200 0.0458175785999213 35 0.04410348 1500 0.03244369 1.412219 1.147009 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E039-H3K4ME3_subsample-2.5e6.cc.plot.pdf

./E039-H3K4ME3_subsample-2.5e6.cc.plot.pdf

./E039-H3K4ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E039-H3K4ME3_subsample-2.5e6.tagAlign.gz 4999939 230 0.106751372739462 35 0.1029929 1500 0.07530346 1.417616 1.135735 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E039-H3K4ME3_subsample-5e6.cc.plot.pdf

./E039-H3K4ME3_subsample-5e6.cc.plot.pdf

./E039-H3K4ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E039-H3K4ME3_subsample-5e6.tagAlign.gz 9999918 220 0.191600928058009 35 0.1854768 1500 0.1357049 1.411894 1.123045 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E039-H3K4ME3_subsample-7.5e6.cc.plot.pdf

./E039-H3K4ME3_subsample-7.5e6.cc.plot.pdf

./E039-H3K4ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E039-H3K4ME3_subsample-7.5e6.tagAlign.gz 14999859 220 0.261017970563178 35 0.2524718 1500 0.1849514 1.411279 1.126572 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E039-H3K9ME3_merged.cc.plot.pdf

./E039-H3K9ME3_merged.cc.plot.pdf

./E039-H3K9ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E039-H3K9ME3_merged.tagAlign.gz 46100780 215 0.390440065884162 35 0.4080303 1500 0.3846947 1.014935 0.2462067 -2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E039-H3K9ME3_subsample-0.1e6.cc.plot.pdf

./E039-H3K9ME3_subsample-0.1e6.cc.plot.pdf

./E039-H3K9ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E039-H3K9ME3_subsample-0.1e6.tagAlign.gz 199998 1130 0.0032713951372042 40 0.003136761 1500 0.00297674 1.098986 1.841348 2 E039-H3K9ME3_subsample-0.1e6.tagAlign.gz 199997 400 0.00326131627827486 30 0.003185256 1500 0.003104909 1.050374 1.946644 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E039-H3K9ME3_subsample-0.25e6.cc.plot.pdf

./E039-H3K9ME3_subsample-0.25e6.cc.plot.pdf

./E039-H3K9ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E039-H3K9ME3_subsample-0.25e6.tagAlign.gz 499996 1195 0.00722356051980615 35 0.007526044 1500 0.007013886 1.029894 0.4093941 -1 E039-H3K9ME3_subsample-0.25e6.tagAlign.gz 499999 185 0.00721100982326205 35 0.007436057 1500 0.007065314 1.020621 0.3929826 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E039-H3K9ME3_subsample-0.5e6.cc.plot.pdf

./E039-H3K9ME3_subsample-0.5e6.cc.plot.pdf

./E039-H3K9ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E039-H3K9ME3_subsample-0.5e6.tagAlign.gz 999995 60 0.0142737109360866 35 0.01470332 1500 0.01392189 1.025271 0.4502245 -1 E039-H3K9ME3_subsample-0.5e6.tagAlign.gz 999989 245 0.0141669814555051 35 0.01476174 1500 0.01383631 1.023899 0.3573175 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E039-H3K9ME3_subsample-10e6.cc.plot.pdf

./E039-H3K9ME3_subsample-10e6.cc.plot.pdf

./E039-H3K9ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E039-H3K9ME3_subsample-10e6.tagAlign.gz 19999826 225 0.219984089351794 35 0.230195 1500 0.2167486 1.014927 0.2406218 -2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E039-H3K9ME3_subsample-1e6.cc.plot.pdf

./E039-H3K9ME3_subsample-1e6.cc.plot.pdf

./E039-H3K9ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E039-H3K9ME3_subsample-1e6.tagAlign.gz 1999975 195 0.0278119743876724 35 0.02910035 1500 0.0273115 1.018325 0.2797739 -1 E039-H3K9ME3_subsample-1e6.tagAlign.gz 1999980 90 0.0278326318995929 35 0.02912494 1500 0.02733481 1.018212 0.2780936 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E039-H3K9ME3_subsample-2.5e6.cc.plot.pdf

./E039-H3K9ME3_subsample-2.5e6.cc.plot.pdf

./E039-H3K9ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E039-H3K9ME3_subsample-2.5e6.tagAlign.gz 4999956 165 0.0664935447259404 35 0.06957444 1500 0.06544394 1.016038 0.2541115 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E039-H3K9ME3_subsample-20e6.cc.plot.pdf

./E039-H3K9ME3_subsample-20e6.cc.plot.pdf

./E039-H3K9ME3_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E039-H3K9ME3_subsample-20e6.tagAlign.gz 39999661 215 0.357982935043354 35 0.3742241 1500 0.3527253 1.014906 0.2445561 -2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E039-H3K9ME3_subsample-5e6.cc.plot.pdf

./E039-H3K9ME3_subsample-5e6.cc.plot.pdf

./E039-H3K9ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E039-H3K9ME3_subsample-5e6.tagAlign.gz 9999916 215 0.12426478368118 35 0.1299826 1500 0.1224081 1.015168 0.2451218 -2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E039-H3K9ME3_subsample-7.5e6.cc.plot.pdf

./E039-H3K9ME3_subsample-7.5e6.cc.plot.pdf

./E039-H3K9ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E039-H3K9ME3_subsample-7.5e6.tagAlign.gz 14999872 215 0.17504406948028 35 0.1832838 1500 0.1723585 1.015581 0.2458102 -2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E040-H3K27AC_merged.cc.plot.pdf

./E040-H3K27AC_merged.cc.plot.pdf

./E040-H3K27AC_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E040-H3K27AC_merged.tagAlign.gz 8607098 270 0.197669145132564 35 0.1776339 1500 0.1383439 1.428824 1.509934 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E040-H3K27AC_subsample-0.1e6.cc.plot.pdf

./E040-H3K27AC_subsample-0.1e6.cc.plot.pdf

./E040-H3K27AC_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E040-H3K27AC_subsample-0.1e6.tagAlign.gz 199986 255 0.00610385208043057 35 0.005188883 1500 0.003776508 1.616269 1.647823 2 E040-H3K27AC_subsample-0.1e6.tagAlign.gz 199989 285 0.00595967597903892 35 0.005323959 1500 0.003936686 1.513881 1.458249 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E040-H3K27AC_subsample-0.25e6.cc.plot.pdf

./E040-H3K27AC_subsample-0.25e6.cc.plot.pdf

./E040-H3K27AC_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E040-H3K27AC_subsample-0.25e6.tagAlign.gz 499980 245 0.0143444524954393 30 0.01258995 1500 0.009788333 1.465464 1.626247 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E040-H3K27AC_subsample-0.5e6.cc.plot.pdf

./E040-H3K27AC_subsample-0.5e6.cc.plot.pdf

./E040-H3K27AC_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E040-H3K27AC_subsample-0.5e6.tagAlign.gz 999936 240 0.0280701755479737 35 0.0251918 1500 0.01953871 1.436644 1.509169 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E040-H3K27AC_subsample-1e6.cc.plot.pdf

./E040-H3K27AC_subsample-1e6.cc.plot.pdf

./E040-H3K27AC_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E040-H3K27AC_subsample-1e6.tagAlign.gz 1999849 260 0.0544263828320794 35 0.04888959 1500 0.03779698 1.439967 1.499142 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E040-H3K27AC_subsample-2.5e6.cc.plot.pdf

./E040-H3K27AC_subsample-2.5e6.cc.plot.pdf

./E040-H3K27AC_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E040-H3K27AC_subsample-2.5e6.tagAlign.gz 4999640 265 0.125275214279773 35 0.1124293 1500 0.08758533 1.430322 1.517064 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E040-H3K27ME3_merged.cc.plot.pdf

./E040-H3K27ME3_merged.cc.plot.pdf

./E040-H3K27ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E040-H3K27ME3_merged.tagAlign.gz 31827871 245 0.308299525948452 35 0.3110166 1500 0.3016131 1.022169 0.711054 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E040-H3K27ME3_subsample-0.1e6.cc.plot.pdf

./E040-H3K27ME3_subsample-0.1e6.cc.plot.pdf

./E040-H3K27ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E040-H3K27ME3_subsample-0.1e6.tagAlign.gz 199996 1310 0.00320465647082675 30 0.0030475 1500 0.003035912 1.055583 14.56218 2 E040-H3K27ME3_subsample-0.1e6.tagAlign.gz 199990 1375 0.00322415673349433 40 0.003086717 1500 0.003031339 1.063608 3.481862 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E040-H3K27ME3_subsample-0.25e6.cc.plot.pdf

./E040-H3K27ME3_subsample-0.25e6.cc.plot.pdf

./E040-H3K27ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E040-H3K27ME3_subsample-0.25e6.tagAlign.gz 499983 225 0.00722764001035975 35 0.007084416 1500 0.007052176 1.024881 5.442496 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E040-H3K27ME3_subsample-0.5e6.cc.plot.pdf

./E040-H3K27ME3_subsample-0.5e6.cc.plot.pdf

./E040-H3K27ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E040-H3K27ME3_subsample-0.5e6.tagAlign.gz 999975 245 0.0141586645170114 35 0.01421221 1500 0.01379794 1.026143 0.8707456 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E040-H3K27ME3_subsample-10e6.cc.plot.pdf

./E040-H3K27ME3_subsample-10e6.cc.plot.pdf

./E040-H3K27ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E040-H3K27ME3_subsample-10e6.tagAlign.gz 19999289 255 0.220016202303086 35 0.221964 1500 0.2152509 1.022138 0.7098451 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E040-H3K27ME3_subsample-1e6.cc.plot.pdf

./E040-H3K27ME3_subsample-1e6.cc.plot.pdf

./E040-H3K27ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E040-H3K27ME3_subsample-1e6.tagAlign.gz 1999920 265 0.0277821723961361 35 0.02801725 1500 0.02715611 1.023054 0.7270147 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E040-H3K27ME3_subsample-2.5e6.cc.plot.pdf

./E040-H3K27ME3_subsample-2.5e6.cc.plot.pdf

./E040-H3K27ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E040-H3K27ME3_subsample-2.5e6.tagAlign.gz 4999825 245 0.0665215845604827 35 0.06695438 1500 0.06505139 1.0226 0.7725726 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E040-H3K27ME3_subsample-5e6.cc.plot.pdf

./E040-H3K27ME3_subsample-5e6.cc.plot.pdf

./E040-H3K27ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E040-H3K27ME3_subsample-5e6.tagAlign.gz 9999642 230 0.124315898236144 35 0.1253947 1500 0.1216385 1.022011 0.7127984 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E040-H3K27ME3_subsample-7.5e6.cc.plot.pdf

./E040-H3K27ME3_subsample-7.5e6.cc.plot.pdf

./E040-H3K27ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E040-H3K27ME3_subsample-7.5e6.tagAlign.gz 14999471 245 0.175084285911487 35 0.1766024 1500 0.1712671 1.022288 0.7154654 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E040-H3K36ME3_merged.cc.plot.pdf

./E040-H3K36ME3_merged.cc.plot.pdf

./E040-H3K36ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E040-H3K36ME3_merged.tagAlign.gz 25485867 215 0.266374535132279 35 0.2730798 1500 0.2607013 1.021762 0.458315 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E040-H3K36ME3_subsample-0.1e6.cc.plot.pdf

./E040-H3K36ME3_subsample-0.1e6.cc.plot.pdf

./E040-H3K36ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E040-H3K36ME3_subsample-0.1e6.tagAlign.gz 199991 1385 0.00324188061713495 40 0.003134414 1500 0.00306572 1.057461 2.564424 2 E040-H3K36ME3_subsample-0.1e6.tagAlign.gz 199996 1370 0.00323936817245152 30 0.003070197 1500 0.003144885 1.030043 -1.265038 NA
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E040-H3K36ME3_subsample-0.25e6.cc.plot.pdf

./E040-H3K36ME3_subsample-0.25e6.cc.plot.pdf

./E040-H3K36ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E040-H3K36ME3_subsample-0.25e6.tagAlign.gz 499982 265 0.00732752666440894 35 0.007549895 1500 0.007129901 1.027718 0.4705441 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E040-H3K36ME3_subsample-0.5e6.cc.plot.pdf

./E040-H3K36ME3_subsample-0.5e6.cc.plot.pdf

./E040-H3K36ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E040-H3K36ME3_subsample-0.5e6.tagAlign.gz 999955 215 0.0143989579460216 35 0.01457806 1500 0.01404248 1.025385 0.6655883 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E040-H3K36ME3_subsample-10e6.cc.plot.pdf

./E040-H3K36ME3_subsample-10e6.cc.plot.pdf

./E040-H3K36ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E040-H3K36ME3_subsample-10e6.tagAlign.gz 19999249 215 0.222413422768918 35 0.2279639 1500 0.2176802 1.021744 0.4602636 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E040-H3K36ME3_subsample-1e6.cc.plot.pdf

./E040-H3K36ME3_subsample-1e6.cc.plot.pdf

./E040-H3K36ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E040-H3K36ME3_subsample-1e6.tagAlign.gz 1999922 235 0.028198371776234 35 0.02889355 1500 0.02756446 1.022997 0.4769517 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E040-H3K36ME3_subsample-2.5e6.cc.plot.pdf

./E040-H3K36ME3_subsample-2.5e6.cc.plot.pdf

./E040-H3K36ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E040-H3K36ME3_subsample-2.5e6.tagAlign.gz 4999815 215 0.0674405238050195 35 0.06915954 1500 0.06584668 1.024205 0.4811084 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E040-H3K36ME3_subsample-5e6.cc.plot.pdf

./E040-H3K36ME3_subsample-5e6.cc.plot.pdf

./E040-H3K36ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E040-H3K36ME3_subsample-5e6.tagAlign.gz 9999613 220 0.125913333554965 35 0.1291148 1500 0.1232294 1.02178 0.456031 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E040-H3K36ME3_subsample-7.5e6.cc.plot.pdf

./E040-H3K36ME3_subsample-7.5e6.cc.plot.pdf

./E040-H3K36ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E040-H3K36ME3_subsample-7.5e6.tagAlign.gz 14999396 230 0.177090975360765 35 0.1815416 1500 0.173296 1.021899 0.4602453 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E040-H3K4ME1_merged.cc.plot.pdf

./E040-H3K4ME1_merged.cc.plot.pdf

./E040-H3K4ME1_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E040-H3K4ME1_merged.tagAlign.gz 19489345 245 0.252144616785375 35 0.2529141 1500 0.2316887 1.08829 0.9637454 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E040-H3K4ME1_subsample-0.1e6.cc.plot.pdf

./E040-H3K4ME1_subsample-0.1e6.cc.plot.pdf

./E040-H3K4ME1_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E040-H3K4ME1_subsample-0.1e6.tagAlign.gz 199999 285 0.00376952685152331 40 0.0036034 1500 0.003169462 1.189327 1.382835 1 E040-H3K4ME1_subsample-0.1e6.tagAlign.gz 199997 245 0.00369598714714967 30 0.00361848 1500 0.00331541 1.11479 1.25574 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E040-H3K4ME1_subsample-0.25e6.cc.plot.pdf

./E040-H3K4ME1_subsample-0.25e6.cc.plot.pdf

./E040-H3K4ME1_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E040-H3K4ME1_subsample-0.25e6.tagAlign.gz 499988 255 0.00889075037737228 30 0.008731531 1500 0.008058322 1.1033 1.236508 1 E040-H3K4ME1_subsample-0.25e6.tagAlign.gz 499986 230 0.00896444095419084 35 0.008988122 1500 0.007910702 1.133204 0.9780208 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E040-H3K4ME1_subsample-0.5e6.cc.plot.pdf

./E040-H3K4ME1_subsample-0.5e6.cc.plot.pdf

./E040-H3K4ME1_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E040-H3K4ME1_subsample-0.5e6.tagAlign.gz 999990 230 0.0176126952293548 35 0.01750934 1500 0.01596412 1.103267 1.066889 1 E040-H3K4ME1_subsample-0.5e6.tagAlign.gz 999982 245 0.017726271169365 40 0.01745312 1500 0.01609413 1.101412 1.200993 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E040-H3K4ME1_subsample-1e6.cc.plot.pdf

./E040-H3K4ME1_subsample-1e6.cc.plot.pdf

./E040-H3K4ME1_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E040-H3K4ME1_subsample-1e6.tagAlign.gz 1999953 255 0.034157283126664 35 0.0341538 1500 0.03143942 1.086448 1.001284 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E040-H3K4ME1_subsample-2.5e6.cc.plot.pdf

./E040-H3K4ME1_subsample-2.5e6.cc.plot.pdf

./E040-H3K4ME1_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E040-H3K4ME1_subsample-2.5e6.tagAlign.gz 4999868 255 0.0809219338083573 35 0.08107285 1500 0.07422889 1.090168 0.9779494 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E040-H3K4ME1_subsample-5e6.cc.plot.pdf

./E040-H3K4ME1_subsample-5e6.cc.plot.pdf

./E040-H3K4ME1_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E040-H3K4ME1_subsample-5e6.tagAlign.gz 9999751 240 0.148813844512368 35 0.1492371 1500 0.1366813 1.088765 0.9662919 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E040-H3K4ME1_subsample-7.5e6.cc.plot.pdf

./E040-H3K4ME1_subsample-7.5e6.cc.plot.pdf

./E040-H3K4ME1_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E040-H3K4ME1_subsample-7.5e6.tagAlign.gz 14999628 245 0.206768462738514 35 0.2075507 1500 0.1900422 1.088013 0.9553227 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E040-H3K4ME3_merged.cc.plot.pdf

./E040-H3K4ME3_merged.cc.plot.pdf

./E040-H3K4ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E040-H3K4ME3_merged.tagAlign.gz 17100920 210 0.213009566267757 35 0.2175557 1500 0.19419 1.096913 0.805436 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E040-H3K4ME3_subsample-0.1e6.cc.plot.pdf

./E040-H3K4ME3_subsample-0.1e6.cc.plot.pdf

./E040-H3K4ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E040-H3K4ME3_subsample-0.1e6.tagAlign.gz 199990 215 0.00344998456111987 35 0.003314385 1500 0.003128629 1.102715 1.729992 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E040-H3K4ME3_subsample-0.25e6.cc.plot.pdf

./E040-H3K4ME3_subsample-0.25e6.cc.plot.pdf

./E040-H3K4ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E040-H3K4ME3_subsample-0.25e6.tagAlign.gz 499983 195 0.00807440531977584 35 0.0082315 1500 0.007257459 1.112566 0.8387184 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E040-H3K4ME3_subsample-0.5e6.cc.plot.pdf

./E040-H3K4ME3_subsample-0.5e6.cc.plot.pdf

./E040-H3K4ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E040-H3K4ME3_subsample-0.5e6.tagAlign.gz 999962 210 0.0159910857997651 35 0.01642013 1500 0.01455808 1.098434 0.7695851 0 E040-H3K4ME3_subsample-0.5e6.tagAlign.gz 999956 225 0.015941870814821 35 0.01619659 1500 0.01448512 1.100568 0.8511684 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E040-H3K4ME3_subsample-1e6.cc.plot.pdf

./E040-H3K4ME3_subsample-1e6.cc.plot.pdf

./E040-H3K4ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E040-H3K4ME3_subsample-1e6.tagAlign.gz 1999913 220 0.0313294680030579 35 0.03181353 1500 0.02845744 1.100924 0.8557665 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E040-H3K4ME3_subsample-2.5e6.cc.plot.pdf

./E040-H3K4ME3_subsample-2.5e6.cc.plot.pdf

./E040-H3K4ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E040-H3K4ME3_subsample-2.5e6.tagAlign.gz 4999783 225 0.0742053772272299 35 0.07582861 1500 0.06762659 1.097281 0.8020941 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E040-H3K4ME3_subsample-5e6.cc.plot.pdf

./E040-H3K4ME3_subsample-5e6.cc.plot.pdf

./E040-H3K4ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E040-H3K4ME3_subsample-5e6.tagAlign.gz 9999597 210 0.137523426158993 35 0.1405035 1500 0.1252533 1.097962 0.8045871 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E040-H3K4ME3_subsample-7.5e6.cc.plot.pdf

./E040-H3K4ME3_subsample-7.5e6.cc.plot.pdf

./E040-H3K4ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E040-H3K4ME3_subsample-7.5e6.tagAlign.gz 14999419 210 0.192117760079936 35 0.1962727 1500 0.1751986 1.096571 0.8028428 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E040-H3K9ME3_merged.cc.plot.pdf

./E040-H3K9ME3_merged.cc.plot.pdf

./E040-H3K9ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E040-H3K9ME3_merged.tagAlign.gz 27339374 220 0.278058766171878 35 0.3007463 1500 0.2715605 1.023929 0.2226519 -2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E040-H3K9ME3_subsample-0.1e6.cc.plot.pdf

./E040-H3K9ME3_subsample-0.1e6.cc.plot.pdf

./E040-H3K9ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E040-H3K9ME3_subsample-0.1e6.tagAlign.gz 199991 1080 0.00327684370519239 40 0.003328112 1500 0.003002873 1.091236 0.8423686 0 E040-H3K9ME3_subsample-0.1e6.tagAlign.gz 199997 1130 0.00324473515527525 35 0.003313631 1500 0.003058287 1.060965 0.730185 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E040-H3K9ME3_subsample-0.25e6.cc.plot.pdf

./E040-H3K9ME3_subsample-0.25e6.cc.plot.pdf

./E040-H3K9ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E040-H3K9ME3_subsample-0.25e6.tagAlign.gz 499982 190 0.00741063599256602 35 0.008027972 1500 0.00708169 1.04645 0.3476195 -1 E040-H3K9ME3_subsample-0.25e6.tagAlign.gz 499982 -270 0.0074384044599494 35 0.007995667 1500 0.007215124 1.030946 0.2860581 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E040-H3K9ME3_subsample-0.5e6.cc.plot.pdf

./E040-H3K9ME3_subsample-0.5e6.cc.plot.pdf

./E040-H3K9ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E040-H3K9ME3_subsample-0.5e6.tagAlign.gz 999964 60 0.0145264676500475 35 0.01575794 1500 0.01413974 1.027351 0.2389876 -2 E040-H3K9ME3_subsample-0.5e6.tagAlign.gz 999972 155 0.0145298154213859 35 0.01564835 1500 0.01404389 1.0346 0.3028567 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E040-H3K9ME3_subsample-10e6.cc.plot.pdf

./E040-H3K9ME3_subsample-10e6.cc.plot.pdf

./E040-H3K9ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E040-H3K9ME3_subsample-10e6.tagAlign.gz 19999306 220 0.221537425968855 35 0.2397316 1500 0.2163109 1.024162 0.2231575 -2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E040-H3K9ME3_subsample-1e6.cc.plot.pdf

./E040-H3K9ME3_subsample-1e6.cc.plot.pdf

./E040-H3K9ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E040-H3K9ME3_subsample-1e6.tagAlign.gz 1999931 205 0.0284860516614632 35 0.03089756 1500 0.02766622 1.029633 0.2537118 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E040-H3K9ME3_subsample-2.5e6.cc.plot.pdf

./E040-H3K9ME3_subsample-2.5e6.cc.plot.pdf

./E040-H3K9ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E040-H3K9ME3_subsample-2.5e6.tagAlign.gz 4999827 215 0.0679099483081619 35 0.0737422 1500 0.06621829 1.025547 0.2248376 -2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E040-H3K9ME3_subsample-5e6.cc.plot.pdf

./E040-H3K9ME3_subsample-5e6.cc.plot.pdf

./E040-H3K9ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E040-H3K9ME3_subsample-5e6.tagAlign.gz 9999671 220 0.126093576438222 35 0.1367274 1500 0.1230419 1.024802 0.2229874 -2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E040-H3K9ME3_subsample-7.5e6.cc.plot.pdf

./E040-H3K9ME3_subsample-7.5e6.cc.plot.pdf

./E040-H3K9ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E040-H3K9ME3_subsample-7.5e6.tagAlign.gz 14999508 220 0.176874699453243 35 0.1915593 1500 0.1727367 1.023956 0.2198415 -2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E041-H3K27AC_merged.cc.plot.pdf

./E041-H3K27AC_merged.cc.plot.pdf

./E041-H3K27AC_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E041-H3K27AC_merged.tagAlign.gz 30643909 260 0.456634746697295 35 0.4181364 1500 0.3334852 1.36928 1.454789 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E041-H3K27AC_subsample-0.1e6.cc.plot.pdf

./E041-H3K27AC_subsample-0.1e6.cc.plot.pdf

./E041-H3K27AC_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E041-H3K27AC_subsample-0.1e6.tagAlign.gz 199998 170 0.00579506899727778 35 0.005169433 1500 0.00415573 1.394477 1.617178 2 E041-H3K27AC_subsample-0.1e6.tagAlign.gz 199998 250 0.00589903048037518 35 0.005192975 1500 0.004208322 1.401754 1.71706 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E041-H3K27AC_subsample-0.25e6.cc.plot.pdf

./E041-H3K27AC_subsample-0.25e6.cc.plot.pdf

./E041-H3K27AC_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E041-H3K27AC_subsample-0.25e6.tagAlign.gz 499997 265 0.014047206991436 40 0.01273075 1500 0.009977568 1.407879 1.478158 1 E041-H3K27AC_subsample-0.25e6.tagAlign.gz 499995 275 0.0140295819385339 40 0.01290533 1500 0.01002671 1.399221 1.390552 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E041-H3K27AC_subsample-0.5e6.cc.plot.pdf

./E041-H3K27AC_subsample-0.5e6.cc.plot.pdf

./E041-H3K27AC_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E041-H3K27AC_subsample-0.5e6.tagAlign.gz 999984 235 0.0273978908557522 40 0.02492471 1500 0.01994532 1.37365 1.496685 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E041-H3K27AC_subsample-10e6.cc.plot.pdf

./E041-H3K27AC_subsample-10e6.cc.plot.pdf

./E041-H3K27AC_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E041-H3K27AC_subsample-10e6.tagAlign.gz 19999835 260 0.355052345549278 35 0.3250756 1500 0.2591929 1.369838 1.455003 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E041-H3K27AC_subsample-1e6.cc.plot.pdf

./E041-H3K27AC_subsample-1e6.cc.plot.pdf

./E041-H3K27AC_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E041-H3K27AC_subsample-1e6.tagAlign.gz 1999986 235 0.0530528508996292 35 0.04824043 1500 0.03868123 1.37154 1.503433 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E041-H3K27AC_subsample-2.5e6.cc.plot.pdf

./E041-H3K27AC_subsample-2.5e6.cc.plot.pdf

./E041-H3K27AC_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E041-H3K27AC_subsample-2.5e6.tagAlign.gz 4999955 255 0.122053423863285 35 0.1114143 1500 0.08902881 1.370943 1.475272 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E041-H3K27AC_subsample-5e6.cc.plot.pdf

./E041-H3K27AC_subsample-5e6.cc.plot.pdf

./E041-H3K27AC_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E041-H3K27AC_subsample-5e6.tagAlign.gz 9999900 250 0.216716816853488 35 0.1984953 1500 0.1582964 1.369057 1.453284 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E041-H3K27AC_subsample-7.5e6.cc.plot.pdf

./E041-H3K27AC_subsample-7.5e6.cc.plot.pdf

./E041-H3K27AC_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E041-H3K27AC_subsample-7.5e6.tagAlign.gz 14999867 250 0.292932152546985 35 0.2679815 1500 0.2138094 1.370062 1.460581 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E041-H3K27ME3_merged.cc.plot.pdf

./E041-H3K27ME3_merged.cc.plot.pdf

./E041-H3K27ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E041-H3K27ME3_merged.tagAlign.gz 32677798 255 0.316918093267647 35 0.3192552 1500 0.3088591 1.026093 0.7751908 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E041-H3K27ME3_subsample-0.1e6.cc.plot.pdf

./E041-H3K27ME3_subsample-0.1e6.cc.plot.pdf

./E041-H3K27ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E041-H3K27ME3_subsample-0.1e6.tagAlign.gz 199997 1145 0.00322694272563568 40 0.003119662 1500 0.002962393 1.089303 1.682143 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E041-H3K27ME3_subsample-0.25e6.cc.plot.pdf

./E041-H3K27ME3_subsample-0.25e6.cc.plot.pdf

./E041-H3K27ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E041-H3K27ME3_subsample-0.25e6.tagAlign.gz 499994 245 0.00732324174784485 40 0.007358674 1500 0.00707712 1.034777 0.8741557 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E041-H3K27ME3_subsample-0.5e6.cc.plot.pdf

./E041-H3K27ME3_subsample-0.5e6.cc.plot.pdf

./E041-H3K27ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E041-H3K27ME3_subsample-0.5e6.tagAlign.gz 999989 285 0.0143811632953653 35 0.01444122 1500 0.01396747 1.029618 0.8732243 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E041-H3K27ME3_subsample-10e6.cc.plot.pdf

./E041-H3K27ME3_subsample-10e6.cc.plot.pdf

./E041-H3K27ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E041-H3K27ME3_subsample-10e6.tagAlign.gz 19999807 245 0.222731608821666 35 0.2244212 1500 0.217074 1.026063 0.770037 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E041-H3K27ME3_subsample-1e6.cc.plot.pdf

./E041-H3K27ME3_subsample-1e6.cc.plot.pdf

./E041-H3K27ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E041-H3K27ME3_subsample-1e6.tagAlign.gz 1999976 245 0.0282445482436453 35 0.02837147 1500 0.02752168 1.026266 0.8506432 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E041-H3K27ME3_subsample-2.5e6.cc.plot.pdf

./E041-H3K27ME3_subsample-2.5e6.cc.plot.pdf

./E041-H3K27ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E041-H3K27ME3_subsample-2.5e6.tagAlign.gz 4999953 255 0.0675311104243298 35 0.06800018 1500 0.06577599 1.026683 0.7891037 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E041-H3K27ME3_subsample-5e6.cc.plot.pdf

./E041-H3K27ME3_subsample-5e6.cc.plot.pdf

./E041-H3K27ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E041-H3K27ME3_subsample-5e6.tagAlign.gz 9999895 255 0.126091396264709 35 0.1270314 1500 0.1228575 1.026322 0.7747884 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E041-H3K27ME3_subsample-7.5e6.cc.plot.pdf

./E041-H3K27ME3_subsample-7.5e6.cc.plot.pdf

./E041-H3K27ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E041-H3K27ME3_subsample-7.5e6.tagAlign.gz 14999847 250 0.177439812894894 35 0.1786298 1500 0.1728479 1.026566 0.7941906 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E041-H3K36ME3_merged.cc.plot.pdf

./E041-H3K36ME3_merged.cc.plot.pdf

./E041-H3K36ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E041-H3K36ME3_merged.tagAlign.gz 40488686 245 0.383027547033495 35 0.3885447 1500 0.3730474 1.026753 0.6439923 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E041-H3K36ME3_subsample-0.1e6.cc.plot.pdf

./E041-H3K36ME3_subsample-0.1e6.cc.plot.pdf

./E041-H3K36ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E041-H3K36ME3_subsample-0.1e6.tagAlign.gz 199998 465 0.00339566910636083 35 0.003321742 1500 0.003079545 1.102653 1.305234 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E041-H3K36ME3_subsample-0.25e6.cc.plot.pdf

./E041-H3K36ME3_subsample-0.25e6.cc.plot.pdf

./E041-H3K36ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E041-H3K36ME3_subsample-0.25e6.tagAlign.gz 499996 215 0.00797894592181157 30 0.007927088 1500 0.00766143 1.041443 1.195207 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E041-H3K36ME3_subsample-0.5e6.cc.plot.pdf

./E041-H3K36ME3_subsample-0.5e6.cc.plot.pdf

./E041-H3K36ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E041-H3K36ME3_subsample-0.5e6.tagAlign.gz 999992 215 0.0156182697826217 35 0.01578172 1500 0.01514962 1.030935 0.7414206 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E041-H3K36ME3_subsample-10e6.cc.plot.pdf

./E041-H3K36ME3_subsample-10e6.cc.plot.pdf

./E041-H3K36ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E041-H3K36ME3_subsample-10e6.tagAlign.gz 19999825 245 0.236860333868437 35 0.2402864 1500 0.2306814 1.026785 0.6433041 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E041-H3K36ME3_subsample-1e6.cc.plot.pdf

./E041-H3K36ME3_subsample-1e6.cc.plot.pdf

./E041-H3K36ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E041-H3K36ME3_subsample-1e6.tagAlign.gz 1999990 230 0.0305968969911681 35 0.03085591 1500 0.02974654 1.028587 0.7665225 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E041-H3K36ME3_subsample-2.5e6.cc.plot.pdf

./E041-H3K36ME3_subsample-2.5e6.cc.plot.pdf

./E041-H3K36ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E041-H3K36ME3_subsample-2.5e6.tagAlign.gz 4999956 205 0.072753047715101 35 0.0737518 1500 0.07075249 1.028275 0.6670067 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E041-H3K36ME3_subsample-20e6.cc.plot.pdf

./E041-H3K36ME3_subsample-20e6.cc.plot.pdf

./E041-H3K36ME3_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E041-H3K36ME3_subsample-20e6.tagAlign.gz 39999666 245 0.380225508614375 35 0.3857081 1500 0.3703109 1.026774 0.6439228 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E041-H3K36ME3_subsample-5e6.cc.plot.pdf

./E041-H3K36ME3_subsample-5e6.cc.plot.pdf

./E041-H3K36ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E041-H3K36ME3_subsample-5e6.tagAlign.gz 9999932 255 0.135223976995483 35 0.1370302 1500 0.1315812 1.027685 0.6685237 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E041-H3K36ME3_subsample-7.5e6.cc.plot.pdf

./E041-H3K36ME3_subsample-7.5e6.cc.plot.pdf

./E041-H3K36ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E041-H3K36ME3_subsample-7.5e6.tagAlign.gz 14999875 265 0.189317544667242 35 0.1920573 1500 0.1843343 1.027034 0.645248 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E041-H3K4ME1_merged.cc.plot.pdf

./E041-H3K4ME1_merged.cc.plot.pdf

./E041-H3K4ME1_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E041-H3K4ME1_merged.tagAlign.gz 44821832 240 0.434901038145072 35 0.4340611 1500 0.4033292 1.078278 1.02733 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E041-H3K4ME1_subsample-0.1e6.cc.plot.pdf

./E041-H3K4ME1_subsample-0.1e6.cc.plot.pdf

./E041-H3K4ME1_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E041-H3K4ME1_subsample-0.1e6.tagAlign.gz 199999 175 0.00373029217729169 30 0.003586868 1500 0.003444626 1.082931 2.008309 2 E041-H3K4ME1_subsample-0.1e6.tagAlign.gz 199998 270 0.00377078434018307 35 0.003566613 1500 0.003222315 1.17021 1.593008 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E041-H3K4ME1_subsample-0.25e6.cc.plot.pdf

./E041-H3K4ME1_subsample-0.25e6.cc.plot.pdf

./E041-H3K4ME1_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E041-H3K4ME1_subsample-0.25e6.tagAlign.gz 499997 305 0.00902339639647684 35 0.00875359 1500 0.007952634 1.134643 1.336856 1 E041-H3K4ME1_subsample-0.25e6.tagAlign.gz 499994 350 0.0089261528829867 35 0.008731492 1500 0.008117499 1.099619 1.317041 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E041-H3K4ME1_subsample-0.5e6.cc.plot.pdf

./E041-H3K4ME1_subsample-0.5e6.cc.plot.pdf

./E041-H3K4ME1_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E041-H3K4ME1_subsample-0.5e6.tagAlign.gz 999990 240 0.0174169272565489 40 0.01737219 1500 0.01606813 1.083942 1.034303 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E041-H3K4ME1_subsample-10e6.cc.plot.pdf

./E041-H3K4ME1_subsample-10e6.cc.plot.pdf

./E041-H3K4ME1_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E041-H3K4ME1_subsample-10e6.tagAlign.gz 19999825 240 0.25790553236522 35 0.2573364 1500 0.2391755 1.078311 1.031339 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E041-H3K4ME1_subsample-1e6.cc.plot.pdf

./E041-H3K4ME1_subsample-1e6.cc.plot.pdf

./E041-H3K4ME1_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E041-H3K4ME1_subsample-1e6.tagAlign.gz 1999986 250 0.0341925809958609 35 0.03374541 1500 0.03152992 1.084449 1.201836 1 E041-H3K4ME1_subsample-1e6.tagAlign.gz 1999980 225 0.0340388481755981 35 0.03386431 1500 0.03158361 1.077738 1.076527 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E041-H3K4ME1_subsample-2.5e6.cc.plot.pdf

./E041-H3K4ME1_subsample-2.5e6.cc.plot.pdf

./E041-H3K4ME1_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E041-H3K4ME1_subsample-2.5e6.tagAlign.gz 4999956 240 0.0807103668734965 35 0.08060227 1500 0.07475294 1.079695 1.01848 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E041-H3K4ME1_subsample-20e6.cc.plot.pdf

./E041-H3K4ME1_subsample-20e6.cc.plot.pdf

./E041-H3K4ME1_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E041-H3K4ME1_subsample-20e6.tagAlign.gz 39999649 240 0.407654393233858 35 0.4068704 1500 0.3780543 1.078296 1.027206 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E041-H3K4ME1_subsample-5e6.cc.plot.pdf

./E041-H3K4ME1_subsample-5e6.cc.plot.pdf

./E041-H3K4ME1_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E041-H3K4ME1_subsample-5e6.tagAlign.gz 9999917 255 0.148848546172586 35 0.1485178 1500 0.1380171 1.078479 1.031495 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E041-H3K4ME1_subsample-7.5e6.cc.plot.pdf

./E041-H3K4ME1_subsample-7.5e6.cc.plot.pdf

./E041-H3K4ME1_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E041-H3K4ME1_subsample-7.5e6.tagAlign.gz 14999878 260 0.207296674550303 35 0.2067944 1500 0.192191 1.078597 1.034395 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E041-H3K4ME3_merged.cc.plot.pdf

./E041-H3K4ME3_merged.cc.plot.pdf

./E041-H3K4ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E041-H3K4ME3_merged.tagAlign.gz 39166183 240 0.448392294707941 35 0.4387671 1500 0.363544 1.233392 1.127955 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E041-H3K4ME3_subsample-0.1e6.cc.plot.pdf

./E041-H3K4ME3_subsample-0.1e6.cc.plot.pdf

./E041-H3K4ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E041-H3K4ME3_subsample-0.1e6.tagAlign.gz 199996 235 0.0045575397384642 40 0.004241704 1500 0.003410052 1.336502 1.37977 1 E041-H3K4ME3_subsample-0.1e6.tagAlign.gz 199996 280 0.00454893437169275 35 0.004111379 1500 0.003503779 1.298294 1.720137 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E041-H3K4ME3_subsample-0.25e6.cc.plot.pdf

./E041-H3K4ME3_subsample-0.25e6.cc.plot.pdf

./E041-H3K4ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E041-H3K4ME3_subsample-0.25e6.tagAlign.gz 499997 250 0.0107417743035493 40 0.01017989 1500 0.008590295 1.250455 1.353475 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E041-H3K4ME3_subsample-0.5e6.cc.plot.pdf

./E041-H3K4ME3_subsample-0.5e6.cc.plot.pdf

./E041-H3K4ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E041-H3K4ME3_subsample-0.5e6.tagAlign.gz 999994 295 0.02095779131285 35 0.02027446 1500 0.0166963 1.255236 1.190974 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E041-H3K4ME3_subsample-10e6.cc.plot.pdf

./E041-H3K4ME3_subsample-10e6.cc.plot.pdf

./E041-H3K4ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E041-H3K4ME3_subsample-10e6.tagAlign.gz 19999782 240 0.295048492126408 35 0.2887341 1500 0.2390053 1.234485 1.126976 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E041-H3K4ME3_subsample-1e6.cc.plot.pdf

./E041-H3K4ME3_subsample-1e6.cc.plot.pdf

./E041-H3K4ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E041-H3K4ME3_subsample-1e6.tagAlign.gz 1999982 220 0.0408234135561665 35 0.03965625 1500 0.03287346 1.241835 1.172076 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E041-H3K4ME3_subsample-2.5e6.cc.plot.pdf

./E041-H3K4ME3_subsample-2.5e6.cc.plot.pdf

./E041-H3K4ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E041-H3K4ME3_subsample-2.5e6.tagAlign.gz 4999931 240 0.0956069217298012 35 0.09356158 1500 0.07716873 1.238934 1.12477 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E041-H3K4ME3_subsample-5e6.cc.plot.pdf

./E041-H3K4ME3_subsample-5e6.cc.plot.pdf

./E041-H3K4ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E041-H3K4ME3_subsample-5e6.tagAlign.gz 9999900 240 0.173650821575788 35 0.169819 1500 0.1407376 1.233863 1.131764 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E041-H3K4ME3_subsample-7.5e6.cc.plot.pdf

./E041-H3K4ME3_subsample-7.5e6.cc.plot.pdf

./E041-H3K4ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E041-H3K4ME3_subsample-7.5e6.tagAlign.gz 14999851 250 0.239417772251369 35 0.2341812 1500 0.1938424 1.235116 1.129814 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E041-H3K9ME3_merged.cc.plot.pdf

./E041-H3K9ME3_merged.cc.plot.pdf

./E041-H3K9ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E041-H3K9ME3_merged.tagAlign.gz 55983700 210 0.439233633842381 35 0.4559033 1500 0.4312434 1.018528 0.3240164 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E041-H3K9ME3_subsample-0.1e6.cc.plot.pdf

./E041-H3K9ME3_subsample-0.1e6.cc.plot.pdf

./E041-H3K9ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E041-H3K9ME3_subsample-0.1e6.tagAlign.gz 199999 375 0.00325374491998422 40 0.003191529 1500 0.003090275 1.052898 1.614454 2 E041-H3K9ME3_subsample-0.1e6.tagAlign.gz 200000 1325 0.00325407539284955 40 0.003210959 1500 0.003013917 1.079683 1.218818 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E041-H3K9ME3_subsample-0.25e6.cc.plot.pdf

./E041-H3K9ME3_subsample-0.25e6.cc.plot.pdf

./E041-H3K9ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E041-H3K9ME3_subsample-0.25e6.tagAlign.gz 499999 465 0.00734398434253929 35 0.00749433 1500 0.007066266 1.039302 0.6487774 0 E041-H3K9ME3_subsample-0.25e6.tagAlign.gz 499996 170 0.00734158338687088 30 0.007472607 1500 0.007099558 1.03409 0.6487767 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E041-H3K9ME3_subsample-0.5e6.cc.plot.pdf

./E041-H3K9ME3_subsample-0.5e6.cc.plot.pdf

./E041-H3K9ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E041-H3K9ME3_subsample-0.5e6.tagAlign.gz 999993 225 0.0143274904048948 35 0.01481876 1500 0.0140343 1.020891 0.3737482 -1 E041-H3K9ME3_subsample-0.5e6.tagAlign.gz 999987 180 0.0143495996222958 35 0.01493776 1500 0.01398584 1.026009 0.3821292 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E041-H3K9ME3_subsample-10e6.cc.plot.pdf

./E041-H3K9ME3_subsample-10e6.cc.plot.pdf

./E041-H3K9ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E041-H3K9ME3_subsample-10e6.tagAlign.gz 19999777 215 0.222307829307113 35 0.2309674 1500 0.218192 1.018863 0.3221665 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E041-H3K9ME3_subsample-1e6.cc.plot.pdf

./E041-H3K9ME3_subsample-1e6.cc.plot.pdf

./E041-H3K9ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E041-H3K9ME3_subsample-1e6.tagAlign.gz 1999979 240 0.0281762848839836 35 0.02934268 1500 0.02756651 1.02212 0.3433104 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E041-H3K9ME3_subsample-2.5e6.cc.plot.pdf

./E041-H3K9ME3_subsample-2.5e6.cc.plot.pdf

./E041-H3K9ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E041-H3K9ME3_subsample-2.5e6.tagAlign.gz 4999942 215 0.0673674097226959 35 0.0699595 1500 0.06612337 1.018814 0.3242961 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E041-H3K9ME3_subsample-20e6.cc.plot.pdf

./E041-H3K9ME3_subsample-20e6.cc.plot.pdf

./E041-H3K9ME3_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E041-H3K9ME3_subsample-20e6.tagAlign.gz 39999602 210 0.360896409795102 35 0.3746616 1500 0.3543287 1.018536 0.3230098 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E041-H3K9ME3_subsample-5e6.cc.plot.pdf

./E041-H3K9ME3_subsample-5e6.cc.plot.pdf

./E041-H3K9ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E041-H3K9ME3_subsample-5e6.tagAlign.gz 9999907 200 0.125869513344164 35 0.1307521 1500 0.1234839 1.019319 0.3282276 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E041-H3K9ME3_subsample-7.5e6.cc.plot.pdf

./E041-H3K9ME3_subsample-7.5e6.cc.plot.pdf

./E041-H3K9ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E041-H3K9ME3_subsample-7.5e6.tagAlign.gz 14999844 215 0.176914049518024 35 0.1838335 1500 0.1737017 1.018494 0.3170579 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E042-H3K27AC_merged.cc.plot.pdf

./E042-H3K27AC_merged.cc.plot.pdf

./E042-H3K27AC_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E042-H3K27AC_merged.tagAlign.gz 18696359 205 0.388324744060334 35 0.3361002 1500 0.2331309 1.665694 1.507186 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E042-H3K27AC_subsample-0.1e6.cc.plot.pdf

./E042-H3K27AC_subsample-0.1e6.cc.plot.pdf

./E042-H3K27AC_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E042-H3K27AC_subsample-0.1e6.tagAlign.gz 199991 200 0.00672744521093229 30 0.005723245 1500 0.003945693 1.70501 1.564935 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E042-H3K27AC_subsample-0.25e6.cc.plot.pdf

./E042-H3K27AC_subsample-0.25e6.cc.plot.pdf

./E042-H3K27AC_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E042-H3K27AC_subsample-0.25e6.tagAlign.gz 499962 185 0.0165551246300063 30 0.01420027 1500 0.009699912 1.706729 1.523259 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E042-H3K27AC_subsample-0.5e6.cc.plot.pdf

./E042-H3K27AC_subsample-0.5e6.cc.plot.pdf

./E042-H3K27AC_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E042-H3K27AC_subsample-0.5e6.tagAlign.gz 999922 215 0.0323617265602905 35 0.02787291 1500 0.01926644 1.679694 1.521562 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E042-H3K27AC_subsample-1e6.cc.plot.pdf

./E042-H3K27AC_subsample-1e6.cc.plot.pdf

./E042-H3K27AC_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E042-H3K27AC_subsample-1e6.tagAlign.gz 1999853 190 0.062362009973066 35 0.05379442 1500 0.03728183 1.672718 1.518852 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E042-H3K27AC_subsample-2.5e6.cc.plot.pdf

./E042-H3K27AC_subsample-2.5e6.cc.plot.pdf

./E042-H3K27AC_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E042-H3K27AC_subsample-2.5e6.tagAlign.gz 4999601 195 0.14272613709644 35 0.1233671 1500 0.08545121 1.670265 1.510578 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E042-H3K27AC_subsample-5e6.cc.plot.pdf

./E042-H3K27AC_subsample-5e6.cc.plot.pdf

./E042-H3K27AC_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E042-H3K27AC_subsample-5e6.tagAlign.gz 9999207 200 0.250747640088709 35 0.2170735 1500 0.1504678 1.666454 1.505573 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E042-H3K27AC_subsample-7.5e6.cc.plot.pdf

./E042-H3K27AC_subsample-7.5e6.cc.plot.pdf

./E042-H3K27AC_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E042-H3K27AC_subsample-7.5e6.tagAlign.gz 14998896 200 0.335734087670093 35 0.290609 1500 0.2016327 1.665078 1.507158 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E042-H3K27ME3_merged.cc.plot.pdf

./E042-H3K27ME3_merged.cc.plot.pdf

./E042-H3K27ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E042-H3K27ME3_merged.tagAlign.gz 34629317 215 0.328999043998095 35 0.3336631 1500 0.3234392 1.01719 0.5438086 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E042-H3K27ME3_subsample-0.1e6.cc.plot.pdf

./E042-H3K27ME3_subsample-0.1e6.cc.plot.pdf

./E042-H3K27ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E042-H3K27ME3_subsample-0.1e6.tagAlign.gz 199993 1485 0.00320387092126369 30 0.003096053 1500 0.003058715 1.047457 3.887565 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E042-H3K27ME3_subsample-0.25e6.cc.plot.pdf

./E042-H3K27ME3_subsample-0.25e6.cc.plot.pdf

./E042-H3K27ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E042-H3K27ME3_subsample-0.25e6.tagAlign.gz 499992 295 0.00721890366481964 35 0.0071762 1500 0.006965039 1.036448 1.202235 1 E042-H3K27ME3_subsample-0.25e6.tagAlign.gz 499989 225 0.00719578331499441 35 0.007274819 1500 0.006959571 1.033941 0.7492911 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E042-H3K27ME3_subsample-0.5e6.cc.plot.pdf

./E042-H3K27ME3_subsample-0.5e6.cc.plot.pdf

./E042-H3K27ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E042-H3K27ME3_subsample-0.5e6.tagAlign.gz 999980 220 0.0141943633727342 35 0.01422179 1500 0.01382777 1.026512 0.9304034 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E042-H3K27ME3_subsample-10e6.cc.plot.pdf

./E042-H3K27ME3_subsample-10e6.cc.plot.pdf

./E042-H3K27ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E042-H3K27ME3_subsample-10e6.tagAlign.gz 19999609 215 0.221318178059085 35 0.2244714 1500 0.217505 1.017532 0.5473705 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E042-H3K27ME3_subsample-1e6.cc.plot.pdf

./E042-H3K27ME3_subsample-1e6.cc.plot.pdf

./E042-H3K27ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E042-H3K27ME3_subsample-1e6.tagAlign.gz 1999959 215 0.0278557117821953 35 0.02819798 1500 0.02722819 1.023047 0.6470695 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E042-H3K27ME3_subsample-2.5e6.cc.plot.pdf

./E042-H3K27ME3_subsample-2.5e6.cc.plot.pdf

./E042-H3K27ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E042-H3K27ME3_subsample-2.5e6.tagAlign.gz 4999891 205 0.0666019686216741 35 0.0675948 1500 0.06547338 1.017237 0.5319961 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E042-H3K27ME3_subsample-5e6.cc.plot.pdf

./E042-H3K27ME3_subsample-5e6.cc.plot.pdf

./E042-H3K27ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E042-H3K27ME3_subsample-5e6.tagAlign.gz 9999791 210 0.124732499549808 35 0.1264686 1500 0.1225773 1.017583 0.5538514 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E042-H3K27ME3_subsample-7.5e6.cc.plot.pdf

./E042-H3K27ME3_subsample-7.5e6.cc.plot.pdf

./E042-H3K27ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E042-H3K27ME3_subsample-7.5e6.tagAlign.gz 14999690 215 0.175890971888016 35 0.1784102 1500 0.1729589 1.016952 0.5378662 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E042-H3K36ME3_merged.cc.plot.pdf

./E042-H3K36ME3_merged.cc.plot.pdf

./E042-H3K36ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E042-H3K36ME3_merged.tagAlign.gz 47339111 220 0.418539519122062 35 0.4252724 1500 0.4069046 1.028594 0.6334418 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E042-H3K36ME3_subsample-0.1e6.cc.plot.pdf

./E042-H3K36ME3_subsample-0.1e6.cc.plot.pdf

./E042-H3K36ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E042-H3K36ME3_subsample-0.1e6.tagAlign.gz 199998 210 0.003337141183122 30 0.003293334 1500 0.003091189 1.079565 1.21671 1 E042-H3K36ME3_subsample-0.1e6.tagAlign.gz 199996 635 0.00338711620377354 30 0.003358044 1500 0.003225223 1.050196 1.218883 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E042-H3K36ME3_subsample-0.25e6.cc.plot.pdf

./E042-H3K36ME3_subsample-0.25e6.cc.plot.pdf

./E042-H3K36ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E042-H3K36ME3_subsample-0.25e6.tagAlign.gz 499993 80 0.00785491801047809 35 0.007827089 1500 0.00759672 1.033988 1.1208 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E042-H3K36ME3_subsample-0.5e6.cc.plot.pdf

./E042-H3K36ME3_subsample-0.5e6.cc.plot.pdf

./E042-H3K36ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E042-H3K36ME3_subsample-0.5e6.tagAlign.gz 999982 235 0.0154869975062696 35 0.01552829 1500 0.01490477 1.039063 0.9337801 0 E042-H3K36ME3_subsample-0.5e6.tagAlign.gz 999981 205 0.0154208297042551 30 0.0155524 1500 0.01474776 1.045639 0.8364824 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E042-H3K36ME3_subsample-10e6.cc.plot.pdf

./E042-H3K36ME3_subsample-10e6.cc.plot.pdf

./E042-H3K36ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E042-H3K36ME3_subsample-10e6.tagAlign.gz 19999571 220 0.235015253217702 35 0.2387672 1500 0.228414 1.0289 0.637603 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E042-H3K36ME3_subsample-1e6.cc.plot.pdf

./E042-H3K36ME3_subsample-1e6.cc.plot.pdf

./E042-H3K36ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E042-H3K36ME3_subsample-1e6.tagAlign.gz 1999954 185 0.0302280517497384 35 0.03058429 1500 0.02935084 1.029887 0.7111824 0 E042-H3K36ME3_subsample-1e6.tagAlign.gz 1999964 255 0.0302299675009877 35 0.03056933 1500 0.02926898 1.032833 0.7390195 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E042-H3K36ME3_subsample-2.5e6.cc.plot.pdf

./E042-H3K36ME3_subsample-2.5e6.cc.plot.pdf

./E042-H3K36ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E042-H3K36ME3_subsample-2.5e6.tagAlign.gz 4999904 210 0.0719970878398418 35 0.07308504 1500 0.06991844 1.02973 0.6564291 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E042-H3K36ME3_subsample-20e6.cc.plot.pdf

./E042-H3K36ME3_subsample-20e6.cc.plot.pdf

./E042-H3K36ME3_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E042-H3K36ME3_subsample-20e6.tagAlign.gz 39999173 210 0.378754601821274 35 0.3848532 1500 0.3682038 1.028655 0.633703 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E042-H3K36ME3_subsample-5e6.cc.plot.pdf

./E042-H3K36ME3_subsample-5e6.cc.plot.pdf

./E042-H3K36ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E042-H3K36ME3_subsample-5e6.tagAlign.gz 9999809 195 0.133830689827872 35 0.1359364 1500 0.1300688 1.028922 0.6411293 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E042-H3K36ME3_subsample-7.5e6.cc.plot.pdf

./E042-H3K36ME3_subsample-7.5e6.cc.plot.pdf

./E042-H3K36ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E042-H3K36ME3_subsample-7.5e6.tagAlign.gz 14999698 205 0.187787050394386 35 0.1907272 1500 0.1825106 1.02891 0.6421672 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E042-H3K4ME1_merged.cc.plot.pdf

./E042-H3K4ME1_merged.cc.plot.pdf

./E042-H3K4ME1_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E042-H3K4ME1_merged.tagAlign.gz 53361201 195 0.464852704241339 35 0.4649323 1500 0.4349677 1.068706 0.9973444 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E042-H3K4ME1_subsample-0.1e6.cc.plot.pdf

./E042-H3K4ME1_subsample-0.1e6.cc.plot.pdf

./E042-H3K4ME1_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E042-H3K4ME1_subsample-0.1e6.tagAlign.gz 199993 -205 0.00353479433143172 40 0.003584937 1500 0.003183346 1.110402 0.8751403 0 E042-H3K4ME1_subsample-0.1e6.tagAlign.gz 199996 165 0.00353432801844515 30 0.003412663 1500 0.003170146 1.114879 1.501675 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E042-H3K4ME1_subsample-0.25e6.cc.plot.pdf

./E042-H3K4ME1_subsample-0.25e6.cc.plot.pdf

./E042-H3K4ME1_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E042-H3K4ME1_subsample-0.25e6.tagAlign.gz 499989 140 0.00837327206279893 35 0.008400938 1500 0.007726444 1.083716 0.9589825 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E042-H3K4ME1_subsample-0.5e6.cc.plot.pdf

./E042-H3K4ME1_subsample-0.5e6.cc.plot.pdf

./E042-H3K4ME1_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E042-H3K4ME1_subsample-0.5e6.tagAlign.gz 999981 155 0.0164536228470818 35 0.01644895 1500 0.01525209 1.078778 1.003906 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E042-H3K4ME1_subsample-10e6.cc.plot.pdf

./E042-H3K4ME1_subsample-10e6.cc.plot.pdf

./E042-H3K4ME1_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E042-H3K4ME1_subsample-10e6.tagAlign.gz 19999432 205 0.247899827322831 35 0.2479706 1500 0.2319382 1.068818 0.9955876 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E042-H3K4ME1_subsample-1e6.cc.plot.pdf

./E042-H3K4ME1_subsample-1e6.cc.plot.pdf

./E042-H3K4ME1_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E042-H3K4ME1_subsample-1e6.tagAlign.gz 1999940 210 0.0323063350497878 35 0.03220648 1500 0.03010649 1.073069 1.047548 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E042-H3K4ME1_subsample-2.5e6.cc.plot.pdf

./E042-H3K4ME1_subsample-2.5e6.cc.plot.pdf

./E042-H3K4ME1_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E042-H3K4ME1_subsample-2.5e6.tagAlign.gz 4999859 215 0.0767458737721758 35 0.07660825 1500 0.07168492 1.0706 1.027954 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E042-H3K4ME1_subsample-20e6.cc.plot.pdf

./E042-H3K4ME1_subsample-20e6.cc.plot.pdf

./E042-H3K4ME1_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E042-H3K4ME1_subsample-20e6.tagAlign.gz 39998873 195 0.395437234034904 35 0.3954529 1500 0.3699542 1.068881 0.9993874 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E042-H3K4ME1_subsample-5e6.cc.plot.pdf

./E042-H3K4ME1_subsample-5e6.cc.plot.pdf

./E042-H3K4ME1_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E042-H3K4ME1_subsample-5e6.tagAlign.gz 9999699 190 0.142196382901448 35 0.1419456 1500 0.1328818 1.070097 1.027673 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E042-H3K4ME1_subsample-7.5e6.cc.plot.pdf

./E042-H3K4ME1_subsample-7.5e6.cc.plot.pdf

./E042-H3K4ME1_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E042-H3K4ME1_subsample-7.5e6.tagAlign.gz 14999537 200 0.198652908228414 35 0.1985791 1500 0.1858209 1.069056 1.005786 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E042-H3K4ME3_merged.cc.plot.pdf

./E042-H3K4ME3_merged.cc.plot.pdf

./E042-H3K4ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E042-H3K4ME3_merged.tagAlign.gz 37119742 210 0.398050775791395 35 0.390728 1500 0.337383 1.179819 1.137271 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E042-H3K4ME3_subsample-0.1e6.cc.plot.pdf

./E042-H3K4ME3_subsample-0.1e6.cc.plot.pdf

./E042-H3K4ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E042-H3K4ME3_subsample-0.1e6.tagAlign.gz 199993 170 0.00383848378506748 35 0.003623654 1500 0.003082422 1.245282 1.396926 1 E042-H3K4ME3_subsample-0.1e6.tagAlign.gz 199993 230 0.00392773232305314 35 0.003605531 1500 0.003234192 1.21444 1.867675 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E042-H3K4ME3_subsample-0.25e6.cc.plot.pdf

./E042-H3K4ME3_subsample-0.25e6.cc.plot.pdf

./E042-H3K4ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E042-H3K4ME3_subsample-0.25e6.tagAlign.gz 499973 210 0.00929842247721979 30 0.008807467 1500 0.007530967 1.234692 1.384611 1 E042-H3K4ME3_subsample-0.25e6.tagAlign.gz 499981 235 0.00917832456605211 30 0.00882512 1500 0.007474137 1.228011 1.261442 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E042-H3K4ME3_subsample-0.5e6.cc.plot.pdf

./E042-H3K4ME3_subsample-0.5e6.cc.plot.pdf

./E042-H3K4ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E042-H3K4ME3_subsample-0.5e6.tagAlign.gz 999950 185 0.0178833963598382 35 0.01734035 1500 0.01495767 1.195601 1.227914 1 E042-H3K4ME3_subsample-0.5e6.tagAlign.gz 999947 195 0.0179488465155086 35 0.01750371 1500 0.01512748 1.186506 1.187328 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E042-H3K4ME3_subsample-10e6.cc.plot.pdf

./E042-H3K4ME3_subsample-10e6.cc.plot.pdf

./E042-H3K4ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E042-H3K4ME3_subsample-10e6.tagAlign.gz 19998894 215 0.263809040886604 35 0.2588748 1500 0.2235406 1.180139 1.139645 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E042-H3K4ME3_subsample-1e6.cc.plot.pdf

./E042-H3K4ME3_subsample-1e6.cc.plot.pdf

./E042-H3K4ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E042-H3K4ME3_subsample-1e6.tagAlign.gz 1999886 215 0.0350063535853218 35 0.03410039 1500 0.02956102 1.184206 1.199578 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E042-H3K4ME3_subsample-2.5e6.cc.plot.pdf

./E042-H3K4ME3_subsample-2.5e6.cc.plot.pdf

./E042-H3K4ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E042-H3K4ME3_subsample-2.5e6.tagAlign.gz 4999709 225 0.0828369809436637 35 0.08119051 1500 0.07000071 1.183373 1.147141 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E042-H3K4ME3_subsample-5e6.cc.plot.pdf

./E042-H3K4ME3_subsample-5e6.cc.plot.pdf

./E042-H3K4ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E042-H3K4ME3_subsample-5e6.tagAlign.gz 9999466 215 0.152581984034412 35 0.1496479 1500 0.1291958 1.181013 1.143463 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E042-H3K4ME3_subsample-7.5e6.cc.plot.pdf

./E042-H3K4ME3_subsample-7.5e6.cc.plot.pdf

./E042-H3K4ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E042-H3K4ME3_subsample-7.5e6.tagAlign.gz 14999168 210 0.212200116267599 35 0.2082165 1500 0.1797972 1.180219 1.140171 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E042-H3K9ME3_merged.cc.plot.pdf

./E042-H3K9ME3_merged.cc.plot.pdf

./E042-H3K9ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E042-H3K9ME3_merged.tagAlign.gz 51278551 225 0.414256180512837 35 0.4314421 1500 0.4078067 1.015815 0.2728744 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E042-H3K9ME3_subsample-0.1e6.cc.plot.pdf

./E042-H3K9ME3_subsample-0.1e6.cc.plot.pdf

./E042-H3K9ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E042-H3K9ME3_subsample-0.1e6.tagAlign.gz 199992 1260 0.00326256279237858 35 0.003127505 1500 0.002994941 1.089358 2.018819 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E042-H3K9ME3_subsample-0.25e6.cc.plot.pdf

./E042-H3K9ME3_subsample-0.25e6.cc.plot.pdf

./E042-H3K9ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E042-H3K9ME3_subsample-0.25e6.tagAlign.gz 499984 415 0.00721320741195308 35 0.007472161 1500 0.006996785 1.030932 0.4552664 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E042-H3K9ME3_subsample-0.5e6.cc.plot.pdf

./E042-H3K9ME3_subsample-0.5e6.cc.plot.pdf

./E042-H3K9ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E042-H3K9ME3_subsample-0.5e6.tagAlign.gz 999962 55 0.0141979802569345 35 0.01457454 1500 0.01383054 1.026567 0.4938707 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E042-H3K9ME3_subsample-10e6.cc.plot.pdf

./E042-H3K9ME3_subsample-10e6.cc.plot.pdf

./E042-H3K9ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E042-H3K9ME3_subsample-10e6.tagAlign.gz 19999269 205 0.219343772755207 35 0.2285489 1500 0.2158368 1.016248 0.2758791 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E042-H3K9ME3_subsample-1e6.cc.plot.pdf

./E042-H3K9ME3_subsample-1e6.cc.plot.pdf

./E042-H3K9ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E042-H3K9ME3_subsample-1e6.tagAlign.gz 1999923 205 0.0277253255883742 35 0.02891133 1500 0.02723702 1.017928 0.2916469 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E042-H3K9ME3_subsample-2.5e6.cc.plot.pdf

./E042-H3K9ME3_subsample-2.5e6.cc.plot.pdf

./E042-H3K9ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E042-H3K9ME3_subsample-2.5e6.tagAlign.gz 4999819 185 0.0662647661808256 35 0.06917062 1500 0.06517415 1.016734 0.2728947 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E042-H3K9ME3_subsample-20e6.cc.plot.pdf

./E042-H3K9ME3_subsample-20e6.cc.plot.pdf

./E042-H3K9ME3_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E042-H3K9ME3_subsample-20e6.tagAlign.gz 39998467 215 0.357026419482393 35 0.3719502 1500 0.3514791 1.015783 0.2709843 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E042-H3K9ME3_subsample-5e6.cc.plot.pdf

./E042-H3K9ME3_subsample-5e6.cc.plot.pdf

./E042-H3K9ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E042-H3K9ME3_subsample-5e6.tagAlign.gz 9999637 200 0.123905162372743 35 0.1292377 1500 0.1219181 1.016298 0.2714658 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E042-H3K9ME3_subsample-7.5e6.cc.plot.pdf

./E042-H3K9ME3_subsample-7.5e6.cc.plot.pdf

./E042-H3K9ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E042-H3K9ME3_subsample-7.5e6.tagAlign.gz 14999398 230 0.174474482389317 35 0.1819718 1500 0.171795 1.015597 0.2632919 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E043-H3K27AC_merged.cc.plot.pdf

./E043-H3K27AC_merged.cc.plot.pdf

./E043-H3K27AC_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E043-H3K27AC_merged.tagAlign.gz 16748928 235 0.219972034503071 35 0.2160524 1500 0.1961212 1.121613 1.196659 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E043-H3K27AC_subsample-0.1e6.cc.plot.pdf

./E043-H3K27AC_subsample-0.1e6.cc.plot.pdf

./E043-H3K27AC_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E043-H3K27AC_subsample-0.1e6.tagAlign.gz 199997 245 0.0035601917087958 40 0.003551607 1500 0.00319923 1.112828 1.024364 1 E043-H3K27AC_subsample-0.1e6.tagAlign.gz 199999 300 0.00356111292922668 35 0.003408029 1500 0.003100747 1.148469 1.498184 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E043-H3K27AC_subsample-0.25e6.cc.plot.pdf

./E043-H3K27AC_subsample-0.25e6.cc.plot.pdf

./E043-H3K27AC_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E043-H3K27AC_subsample-0.25e6.tagAlign.gz 499997 295 0.00861510519617236 35 0.00828156 1500 0.007398073 1.164507 1.377534 1 E043-H3K27AC_subsample-0.25e6.tagAlign.gz 499998 220 0.00860705035736527 30 0.008281842 1500 0.00751668 1.14506 1.42502 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E043-H3K27AC_subsample-0.5e6.cc.plot.pdf

./E043-H3K27AC_subsample-0.5e6.cc.plot.pdf

./E043-H3K27AC_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E043-H3K27AC_subsample-0.5e6.tagAlign.gz 999990 245 0.0167912816266349 40 0.01637677 1500 0.01480311 1.134308 1.263408 1 E043-H3K27AC_subsample-0.5e6.tagAlign.gz 999994 240 0.0168137008474283 35 0.01631675 1500 0.01480929 1.135348 1.329663 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E043-H3K27AC_subsample-1e6.cc.plot.pdf

./E043-H3K27AC_subsample-1e6.cc.plot.pdf

./E043-H3K27AC_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E043-H3K27AC_subsample-1e6.tagAlign.gz 1999988 240 0.0327888993331649 35 0.03206394 1500 0.02921439 1.122354 1.254411 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E043-H3K27AC_subsample-2.5e6.cc.plot.pdf

./E043-H3K27AC_subsample-2.5e6.cc.plot.pdf

./E043-H3K27AC_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E043-H3K27AC_subsample-2.5e6.tagAlign.gz 4999978 240 0.0779759762657824 35 0.07653665 1500 0.06947033 1.122436 1.203688 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E043-H3K27AC_subsample-5e6.cc.plot.pdf

./E043-H3K27AC_subsample-5e6.cc.plot.pdf

./E043-H3K27AC_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E043-H3K27AC_subsample-5e6.tagAlign.gz 9999943 240 0.144422591987953 35 0.1418474 1500 0.1287809 1.12146 1.197082 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E043-H3K27AC_subsample-7.5e6.cc.plot.pdf

./E043-H3K27AC_subsample-7.5e6.cc.plot.pdf

./E043-H3K27AC_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E043-H3K27AC_subsample-7.5e6.tagAlign.gz 14999914 235 0.201677574993179 35 0.1981281 1500 0.179832 1.121477 1.194003 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E043-H3K27ME3_merged.cc.plot.pdf

./E043-H3K27ME3_merged.cc.plot.pdf

./E043-H3K27ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E043-H3K27ME3_merged.tagAlign.gz 41043099 220 0.368189675223084 35 0.3719015 1500 0.3617022 1.017936 0.6360662 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E043-H3K27ME3_subsample-0.1e6.cc.plot.pdf

./E043-H3K27ME3_subsample-0.1e6.cc.plot.pdf

./E043-H3K27ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E043-H3K27ME3_subsample-0.1e6.tagAlign.gz 199994 395 0.00328461419893505 40 0.003148184 1500 0.003083255 1.065307 3.101203 2 E043-H3K27ME3_subsample-0.1e6.tagAlign.gz 199990 -315 0.00320318166968229 30 0.003139138 1500 0.00308033 1.039883 2.089028 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E043-H3K27ME3_subsample-0.25e6.cc.plot.pdf

./E043-H3K27ME3_subsample-0.25e6.cc.plot.pdf

./E043-H3K27ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E043-H3K27ME3_subsample-0.25e6.tagAlign.gz 499979 270 0.00723398896289557 35 0.007225648 1500 0.007080136 1.02173 1.057322 1 E043-H3K27ME3_subsample-0.25e6.tagAlign.gz 499982 130 0.00724111777609658 35 0.007228869 1500 0.006943348 1.042886 1.042901 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E043-H3K27ME3_subsample-0.5e6.cc.plot.pdf

./E043-H3K27ME3_subsample-0.5e6.cc.plot.pdf

./E043-H3K27ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E043-H3K27ME3_subsample-0.5e6.tagAlign.gz 999958 270 0.0142423559319392 35 0.01429845 1500 0.01392397 1.022866 0.8501948 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E043-H3K27ME3_subsample-10e6.cc.plot.pdf

./E043-H3K27ME3_subsample-10e6.cc.plot.pdf

./E043-H3K27ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E043-H3K27ME3_subsample-10e6.tagAlign.gz 19999366 215 0.222260677639466 35 0.2244639 1500 0.2182833 1.018221 0.6435229 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E043-H3K27ME3_subsample-1e6.cc.plot.pdf

./E043-H3K27ME3_subsample-1e6.cc.plot.pdf

./E043-H3K27ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E043-H3K27ME3_subsample-1e6.tagAlign.gz 1999945 215 0.0279922148957651 35 0.0282061 1500 0.02745588 1.019535 0.7149065 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E043-H3K27ME3_subsample-2.5e6.cc.plot.pdf

./E043-H3K27ME3_subsample-2.5e6.cc.plot.pdf

./E043-H3K27ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E043-H3K27ME3_subsample-2.5e6.tagAlign.gz 4999877 220 0.0669511580047231 35 0.06760382 1500 0.06574334 1.018372 0.6491965 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E043-H3K27ME3_subsample-20e6.cc.plot.pdf

./E043-H3K27ME3_subsample-20e6.cc.plot.pdf

./E043-H3K27ME3_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E043-H3K27ME3_subsample-20e6.tagAlign.gz 39998779 220 0.362290432697056 35 0.3659471 1500 0.3559114 1.017923 0.6356313 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E043-H3K27ME3_subsample-5e6.cc.plot.pdf

./E043-H3K27ME3_subsample-5e6.cc.plot.pdf

./E043-H3K27ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E043-H3K27ME3_subsample-5e6.tagAlign.gz 9999699 230 0.125383682534853 35 0.1265308 1500 0.1231452 1.018177 0.6611796 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E043-H3K27ME3_subsample-7.5e6.cc.plot.pdf

./E043-H3K27ME3_subsample-7.5e6.cc.plot.pdf

./E043-H3K27ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E043-H3K27ME3_subsample-7.5e6.tagAlign.gz 14999503 220 0.176708713743811 35 0.1785602 1500 0.1735445 1.018233 0.6308571 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E043-H3K36ME3_merged.cc.plot.pdf

./E043-H3K36ME3_merged.cc.plot.pdf

./E043-H3K36ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E043-H3K36ME3_merged.tagAlign.gz 38590439 240 0.379215183349734 35 0.3858151 1500 0.3690506 1.027543 0.606315 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E043-H3K36ME3_subsample-0.1e6.cc.plot.pdf

./E043-H3K36ME3_subsample-0.1e6.cc.plot.pdf

./E043-H3K36ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E043-H3K36ME3_subsample-0.1e6.tagAlign.gz 199989 225 0.0035189695147068 30 0.003372896 1500 0.003215988 1.094211 1.930949 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E043-H3K36ME3_subsample-0.25e6.cc.plot.pdf

./E043-H3K36ME3_subsample-0.25e6.cc.plot.pdf

./E043-H3K36ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E043-H3K36ME3_subsample-0.25e6.tagAlign.gz 499992 310 0.00824731555993504 35 0.008171506 1500 0.007921973 1.041068 1.303803 1 E043-H3K36ME3_subsample-0.25e6.tagAlign.gz 499994 210 0.00824505267955125 35 0.008276548 1500 0.007828796 1.05317 0.9296588 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E043-H3K36ME3_subsample-0.5e6.cc.plot.pdf

./E043-H3K36ME3_subsample-0.5e6.cc.plot.pdf

./E043-H3K36ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E043-H3K36ME3_subsample-0.5e6.tagAlign.gz 999979 255 0.0162022259051275 35 0.01637288 1500 0.01558159 1.039831 0.7843378 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E043-H3K36ME3_subsample-10e6.cc.plot.pdf

./E043-H3K36ME3_subsample-10e6.cc.plot.pdf

./E043-H3K36ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E043-H3K36ME3_subsample-10e6.tagAlign.gz 19999586 240 0.242722156640901 35 0.2468899 1500 0.2361216 1.027954 0.6129575 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E043-H3K36ME3_subsample-1e6.cc.plot.pdf

./E043-H3K36ME3_subsample-1e6.cc.plot.pdf

./E043-H3K36ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E043-H3K36ME3_subsample-1e6.tagAlign.gz 1999955 250 0.0315915514513272 35 0.03194653 1500 0.03056666 1.03353 0.7427434 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E043-H3K36ME3_subsample-2.5e6.cc.plot.pdf

./E043-H3K36ME3_subsample-2.5e6.cc.plot.pdf

./E043-H3K36ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E043-H3K36ME3_subsample-2.5e6.tagAlign.gz 4999903 240 0.0750804245918705 35 0.07623883 1500 0.07303855 1.027956 0.6380298 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E043-H3K36ME3_subsample-5e6.cc.plot.pdf

./E043-H3K36ME3_subsample-5e6.cc.plot.pdf

./E043-H3K36ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E043-H3K36ME3_subsample-5e6.tagAlign.gz 9999811 250 0.13903266616074 35 0.1414758 1500 0.1351753 1.028536 0.6122286 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E043-H3K36ME3_subsample-7.5e6.cc.plot.pdf

./E043-H3K36ME3_subsample-7.5e6.cc.plot.pdf

./E043-H3K36ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E043-H3K36ME3_subsample-7.5e6.tagAlign.gz 14999704 235 0.194362879461181 35 0.1977092 1500 0.1890859 1.027908 0.6119434 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E043-H3K4ME1_merged.cc.plot.pdf

./E043-H3K4ME1_merged.cc.plot.pdf

./E043-H3K4ME1_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E043-H3K4ME1_merged.tagAlign.gz 23863651 225 0.302180167798331 35 0.3037167 1500 0.2771908 1.090152 0.9420727 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E043-H3K4ME1_subsample-0.1e6.cc.plot.pdf

./E043-H3K4ME1_subsample-0.1e6.cc.plot.pdf

./E043-H3K4ME1_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E043-H3K4ME1_subsample-0.1e6.tagAlign.gz 199994 220 0.00398104332618878 40 0.003767575 1500 0.003381576 1.177274 1.553029 2 E043-H3K4ME1_subsample-0.1e6.tagAlign.gz 199993 335 0.00392809510249528 30 0.003864433 1500 0.003390419 1.158587 1.134305 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E043-H3K4ME1_subsample-0.25e6.cc.plot.pdf

./E043-H3K4ME1_subsample-0.25e6.cc.plot.pdf

./E043-H3K4ME1_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E043-H3K4ME1_subsample-0.25e6.tagAlign.gz 499965 210 0.00943627356013796 40 0.009238316 1500 0.008390211 1.124676 1.233412 1 E043-H3K4ME1_subsample-0.25e6.tagAlign.gz 499975 195 0.00937471141084167 40 0.009299418 1500 0.008373412 1.119581 1.08131 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E043-H3K4ME1_subsample-0.5e6.cc.plot.pdf

./E043-H3K4ME1_subsample-0.5e6.cc.plot.pdf

./E043-H3K4ME1_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E043-H3K4ME1_subsample-0.5e6.tagAlign.gz 999945 260 0.0183982371326601 35 0.01850981 1500 0.01677235 1.096938 0.9357845 0 E043-H3K4ME1_subsample-0.5e6.tagAlign.gz 999949 320 0.018337925840437 35 0.01837444 1500 0.01664717 1.101564 0.978859 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E043-H3K4ME1_subsample-10e6.cc.plot.pdf

./E043-H3K4ME1_subsample-10e6.cc.plot.pdf

./E043-H3K4ME1_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E043-H3K4ME1_subsample-10e6.tagAlign.gz 19998943 225 0.267023585272776 35 0.2683665 1500 0.2448531 1.090546 0.9428863 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E043-H3K4ME1_subsample-1e6.cc.plot.pdf

./E043-H3K4ME1_subsample-1e6.cc.plot.pdf

./E043-H3K4ME1_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E043-H3K4ME1_subsample-1e6.tagAlign.gz 1999885 200 0.0359749510017488 35 0.03601603 1500 0.0328676 1.094541 0.9869531 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E043-H3K4ME1_subsample-2.5e6.cc.plot.pdf

./E043-H3K4ME1_subsample-2.5e6.cc.plot.pdf

./E043-H3K4ME1_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E043-H3K4ME1_subsample-2.5e6.tagAlign.gz 4999734 230 0.0847275254855533 35 0.0851729 1500 0.07750102 1.093244 0.9419468 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E043-H3K4ME1_subsample-5e6.cc.plot.pdf

./E043-H3K4ME1_subsample-5e6.cc.plot.pdf

./E043-H3K4ME1_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E043-H3K4ME1_subsample-5e6.tagAlign.gz 9999493 240 0.155473435395721 35 0.1560232 1500 0.1425532 1.090634 0.9591837 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E043-H3K4ME1_subsample-7.5e6.cc.plot.pdf

./E043-H3K4ME1_subsample-7.5e6.cc.plot.pdf

./E043-H3K4ME1_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E043-H3K4ME1_subsample-7.5e6.tagAlign.gz 14999200 225 0.215401010344117 35 0.2164644 1500 0.197577 1.090213 0.9436965 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E043-H3K4ME3_merged.cc.plot.pdf

./E043-H3K4ME3_merged.cc.plot.pdf

./E043-H3K4ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E043-H3K4ME3_merged.tagAlign.gz 15737826 240 0.375387695067366 35 0.3373874 1500 0.203103 1.848262 1.282983 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E043-H3K4ME3_subsample-0.1e6.cc.plot.pdf

./E043-H3K4ME3_subsample-0.1e6.cc.plot.pdf

./E043-H3K4ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E043-H3K4ME3_subsample-0.1e6.tagAlign.gz 199979 285 0.0083896655192752 30 0.007198851 1500 0.003960106 2.118546 1.367678 1 E043-H3K4ME3_subsample-0.1e6.tagAlign.gz 199976 250 0.00836507223917593 35 0.007295509 1500 0.004173167 2.00449 1.342552 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E043-H3K4ME3_subsample-0.25e6.cc.plot.pdf

./E043-H3K4ME3_subsample-0.25e6.cc.plot.pdf

./E043-H3K4ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E043-H3K4ME3_subsample-0.25e6.tagAlign.gz 499948 225 0.019706975596198 40 0.01749158 1500 0.01023245 1.925929 1.305188 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E043-H3K4ME3_subsample-0.5e6.cc.plot.pdf

./E043-H3K4ME3_subsample-0.5e6.cc.plot.pdf

./E043-H3K4ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E043-H3K4ME3_subsample-0.5e6.tagAlign.gz 999890 270 0.038011129576467 40 0.03418544 1500 0.02031067 1.871486 1.27573 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E043-H3K4ME3_subsample-1e6.cc.plot.pdf

./E043-H3K4ME3_subsample-1e6.cc.plot.pdf

./E043-H3K4ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E043-H3K4ME3_subsample-1e6.tagAlign.gz 1999801 260 0.0729068002183525 35 0.06546794 1500 0.0390966 1.864786 1.282081 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E043-H3K4ME3_subsample-2.5e6.cc.plot.pdf

./E043-H3K4ME3_subsample-2.5e6.cc.plot.pdf

./E043-H3K4ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E043-H3K4ME3_subsample-2.5e6.tagAlign.gz 4999456 240 0.163002738018507 35 0.146339 1500 0.08805937 1.851055 1.285928 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E043-H3K4ME3_subsample-5e6.cc.plot.pdf

./E043-H3K4ME3_subsample-5e6.cc.plot.pdf

./E043-H3K4ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E043-H3K4ME3_subsample-5e6.tagAlign.gz 9998947 245 0.278170559577781 35 0.2500916 1500 0.1504157 1.849345 1.281703 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E043-H3K4ME3_subsample-7.5e6.cc.plot.pdf

./E043-H3K4ME3_subsample-7.5e6.cc.plot.pdf

./E043-H3K4ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E043-H3K4ME3_subsample-7.5e6.tagAlign.gz 14998403 240 0.364390458585038 35 0.3275625 1500 0.1971822 1.847989 1.282465 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E043-H3K9ME3_merged.cc.plot.pdf

./E043-H3K9ME3_merged.cc.plot.pdf

./E043-H3K9ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E043-H3K9ME3_merged.tagAlign.gz 37710621 235 0.347568584787271 35 0.3692683 1500 0.3397783 1.022927 0.2641659 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E043-H3K9ME3_subsample-0.1e6.cc.plot.pdf

./E043-H3K9ME3_subsample-0.1e6.cc.plot.pdf

./E043-H3K9ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E043-H3K9ME3_subsample-0.1e6.tagAlign.gz 200000 55 0.00330467464976045 40 0.003295583 1500 0.003063117 1.07886 1.03911 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E043-H3K9ME3_subsample-0.25e6.cc.plot.pdf

./E043-H3K9ME3_subsample-0.25e6.cc.plot.pdf

./E043-H3K9ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E043-H3K9ME3_subsample-0.25e6.tagAlign.gz 499996 65 0.00744801156749811 35 0.007832227 1500 0.007146187 1.042236 0.4399517 -1 E043-H3K9ME3_subsample-0.25e6.tagAlign.gz 499994 260 0.00744260828271876 35 0.007834265 1500 0.007081766 1.050954 0.4795257 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E043-H3K9ME3_subsample-0.5e6.cc.plot.pdf

./E043-H3K9ME3_subsample-0.5e6.cc.plot.pdf

./E043-H3K9ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E043-H3K9ME3_subsample-0.5e6.tagAlign.gz 999989 250 0.0145535310241906 35 0.01553527 1500 0.01413605 1.029533 0.2983656 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E043-H3K9ME3_subsample-10e6.cc.plot.pdf

./E043-H3K9ME3_subsample-10e6.cc.plot.pdf

./E043-H3K9ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E043-H3K9ME3_subsample-10e6.tagAlign.gz 19999753 225 0.223343882141419 35 0.2376275 1500 0.2182919 1.023143 0.2612766 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E043-H3K9ME3_subsample-1e6.cc.plot.pdf

./E043-H3K9ME3_subsample-1e6.cc.plot.pdf

./E043-H3K9ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E043-H3K9ME3_subsample-1e6.tagAlign.gz 1999972 235 0.0285777673627888 35 0.0305427 1500 0.02789683 1.024409 0.2573571 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E043-H3K9ME3_subsample-2.5e6.cc.plot.pdf

./E043-H3K9ME3_subsample-2.5e6.cc.plot.pdf

./E043-H3K9ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E043-H3K9ME3_subsample-2.5e6.tagAlign.gz 4999941 215 0.0682309281875656 35 0.07273617 1500 0.0666516 1.023695 0.2595625 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E043-H3K9ME3_subsample-5e6.cc.plot.pdf

./E043-H3K9ME3_subsample-5e6.cc.plot.pdf

./E043-H3K9ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E043-H3K9ME3_subsample-5e6.tagAlign.gz 9999868 235 0.126933005087595 35 0.1353406 1500 0.1240413 1.023313 0.2559204 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E043-H3K9ME3_subsample-7.5e6.cc.plot.pdf

./E043-H3K9ME3_subsample-7.5e6.cc.plot.pdf

./E043-H3K9ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E043-H3K9ME3_subsample-7.5e6.tagAlign.gz 14999809 230 0.178284157063131 35 0.1897273 1500 0.1742219 1.023316 0.2619882 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E044-H3K27AC_merged.cc.plot.pdf

./E044-H3K27AC_merged.cc.plot.pdf

./E044-H3K27AC_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E044-H3K27AC_merged.tagAlign.gz 8349447 225 0.32128711035121 40 0.2695934 1500 0.1758042 1.827528 1.551168 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E044-H3K27AC_subsample-0.1e6.cc.plot.pdf

./E044-H3K27AC_subsample-0.1e6.cc.plot.pdf

./E044-H3K27AC_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E044-H3K27AC_subsample-0.1e6.tagAlign.gz 199990 250 0.0115866544637461 40 0.009567891 1500 0.006273298 1.84698 1.612751 2 E044-H3K27AC_subsample-0.1e6.tagAlign.gz 199989 265 0.0115751425705392 30 0.009607806 1500 0.006205678 1.86525 1.578266 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E044-H3K27AC_subsample-0.25e6.cc.plot.pdf

./E044-H3K27AC_subsample-0.25e6.cc.plot.pdf

./E044-H3K27AC_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E044-H3K27AC_subsample-0.25e6.tagAlign.gz 499968 220 0.0278965122113192 40 0.02318217 1500 0.01492403 1.869235 1.570873 2 E044-H3K27AC_subsample-0.25e6.tagAlign.gz 499976 225 0.0277005807958076 40 0.02305835 1500 0.01489554 1.859657 1.568704 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E044-H3K27AC_subsample-0.5e6.cc.plot.pdf

./E044-H3K27AC_subsample-0.5e6.cc.plot.pdf

./E044-H3K27AC_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E044-H3K27AC_subsample-0.5e6.tagAlign.gz 999925 225 0.053914783280983 40 0.04495704 1500 0.02911976 1.851484 1.565611 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E044-H3K27AC_subsample-1e6.cc.plot.pdf

./E044-H3K27AC_subsample-1e6.cc.plot.pdf

./E044-H3K27AC_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E044-H3K27AC_subsample-1e6.tagAlign.gz 1999879 210 0.101537630499668 40 0.08519607 1500 0.05561133 1.825844 1.552364 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E044-H3K27AC_subsample-2.5e6.cc.plot.pdf

./E044-H3K27AC_subsample-2.5e6.cc.plot.pdf

./E044-H3K27AC_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E044-H3K27AC_subsample-2.5e6.tagAlign.gz 4999715 225 0.22029673589378 40 0.1845425 1500 0.1206264 1.826273 1.559392 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E044-H3K27ME3_merged.cc.plot.pdf

./E044-H3K27ME3_merged.cc.plot.pdf

./E044-H3K27ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E044-H3K27ME3_merged.tagAlign.gz 36029747 210 0.34014857154065 35 0.3440355 1500 0.3334431 1.02011 0.6330474 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E044-H3K27ME3_subsample-0.1e6.cc.plot.pdf

./E044-H3K27ME3_subsample-0.1e6.cc.plot.pdf

./E044-H3K27ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E044-H3K27ME3_subsample-0.1e6.tagAlign.gz 199996 1205 0.00324422193090111 40 0.003204675 1500 0.00307141 1.056265 1.296754 1 E044-H3K27ME3_subsample-0.1e6.tagAlign.gz 199996 480 0.00322571861430876 35 0.003152715 1500 0.003039775 1.06117 1.646398 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E044-H3K27ME3_subsample-0.25e6.cc.plot.pdf

./E044-H3K27ME3_subsample-0.25e6.cc.plot.pdf

./E044-H3K27ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E044-H3K27ME3_subsample-0.25e6.tagAlign.gz 499995 240 0.00736927373253257 40 0.007254145 1500 0.007042363 1.046421 1.543617 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E044-H3K27ME3_subsample-0.5e6.cc.plot.pdf

./E044-H3K27ME3_subsample-0.5e6.cc.plot.pdf

./E044-H3K27ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E044-H3K27ME3_subsample-0.5e6.tagAlign.gz 999983 245 0.0144197721703438 35 0.01458917 1500 0.01402952 1.027817 0.6973205 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E044-H3K27ME3_subsample-10e6.cc.plot.pdf

./E044-H3K27ME3_subsample-10e6.cc.plot.pdf

./E044-H3K27ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E044-H3K27ME3_subsample-10e6.tagAlign.gz 19999587 210 0.223695172783001 35 0.2262281 1500 0.2192299 1.020368 0.638057 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E044-H3K27ME3_subsample-1e6.cc.plot.pdf

./E044-H3K27ME3_subsample-1e6.cc.plot.pdf

./E044-H3K27ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E044-H3K27ME3_subsample-1e6.tagAlign.gz 1999953 200 0.028266953590474 35 0.02848664 1500 0.02769412 1.020684 0.7228004 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E044-H3K27ME3_subsample-2.5e6.cc.plot.pdf

./E044-H3K27ME3_subsample-2.5e6.cc.plot.pdf

./E044-H3K27ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E044-H3K27ME3_subsample-2.5e6.tagAlign.gz 4999894 220 0.0676757633853222 35 0.06828704 1500 0.06633101 1.020273 0.6874897 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E044-H3K27ME3_subsample-5e6.cc.plot.pdf

./E044-H3K27ME3_subsample-5e6.cc.plot.pdf

./E044-H3K27ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E044-H3K27ME3_subsample-5e6.tagAlign.gz 9999828 220 0.126357230554537 35 0.1278764 1500 0.1239389 1.019513 0.6141816 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E044-H3K27ME3_subsample-7.5e6.cc.plot.pdf

./E044-H3K27ME3_subsample-7.5e6.cc.plot.pdf

./E044-H3K27ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E044-H3K27ME3_subsample-7.5e6.tagAlign.gz 14999684 210 0.178014320565932 35 0.1800466 1500 0.1744665 1.020335 0.6358034 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E044-H3K36ME3_merged.cc.plot.pdf

./E044-H3K36ME3_merged.cc.plot.pdf

./E044-H3K36ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E044-H3K36ME3_merged.tagAlign.gz 29366378 210 0.317659464889164 35 0.3238644 1500 0.3079144 1.031649 0.610976 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E044-H3K36ME3_subsample-0.1e6.cc.plot.pdf

./E044-H3K36ME3_subsample-0.1e6.cc.plot.pdf

./E044-H3K36ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E044-H3K36ME3_subsample-0.1e6.tagAlign.gz 199992 380 0.00345608875529341 40 0.003480742 1500 0.003217259 1.074234 0.9064323 0 E044-H3K36ME3_subsample-0.1e6.tagAlign.gz 199993 285 0.00343890177421735 35 0.00337386 1500 0.003191195 1.077622 1.356071 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E044-H3K36ME3_subsample-0.25e6.cc.plot.pdf

./E044-H3K36ME3_subsample-0.25e6.cc.plot.pdf

./E044-H3K36ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E044-H3K36ME3_subsample-0.25e6.tagAlign.gz 499991 195 0.00822938144545033 35 0.008181211 1500 0.007733001 1.06419 1.107474 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E044-H3K36ME3_subsample-0.5e6.cc.plot.pdf

./E044-H3K36ME3_subsample-0.5e6.cc.plot.pdf

./E044-H3K36ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E044-H3K36ME3_subsample-0.5e6.tagAlign.gz 999974 190 0.0161658035643504 35 0.01643837 1500 0.01555646 1.03917 0.6909388 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E044-H3K36ME3_subsample-10e6.cc.plot.pdf

./E044-H3K36ME3_subsample-10e6.cc.plot.pdf

./E044-H3K36ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E044-H3K36ME3_subsample-10e6.tagAlign.gz 19999552 205 0.241995795905539 35 0.2467242 1500 0.2346456 1.031325 0.6085298 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E044-H3K36ME3_subsample-1e6.cc.plot.pdf

./E044-H3K36ME3_subsample-1e6.cc.plot.pdf

./E044-H3K36ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E044-H3K36ME3_subsample-1e6.tagAlign.gz 1999955 205 0.0315681371509826 35 0.03199524 1500 0.0304237 1.037616 0.728224 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E044-H3K36ME3_subsample-2.5e6.cc.plot.pdf

./E044-H3K36ME3_subsample-2.5e6.cc.plot.pdf

./E044-H3K36ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E044-H3K36ME3_subsample-2.5e6.tagAlign.gz 4999863 205 0.074909889260506 35 0.07635091 1500 0.07241302 1.034481 0.6340628 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E044-H3K36ME3_subsample-5e6.cc.plot.pdf

./E044-H3K36ME3_subsample-5e6.cc.plot.pdf

./E044-H3K36ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E044-H3K36ME3_subsample-5e6.tagAlign.gz 9999768 220 0.1387118601781 35 0.1414083 1500 0.1344406 1.03177 0.6130072 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E044-H3K36ME3_subsample-7.5e6.cc.plot.pdf

./E044-H3K36ME3_subsample-7.5e6.cc.plot.pdf

./E044-H3K36ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E044-H3K36ME3_subsample-7.5e6.tagAlign.gz 14999660 210 0.193860801958177 35 0.1976646 1500 0.187806 1.03224 0.6141605 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E044-H3K4ME1_merged.cc.plot.pdf

./E044-H3K4ME1_merged.cc.plot.pdf

./E044-H3K4ME1_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E044-H3K4ME1_merged.tagAlign.gz 17250888 205 0.222038217941863 35 0.2234121 1500 0.2038686 1.089124 0.9296996 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E044-H3K4ME1_subsample-0.1e6.cc.plot.pdf

./E044-H3K4ME1_subsample-0.1e6.cc.plot.pdf

./E044-H3K4ME1_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E044-H3K4ME1_subsample-0.1e6.tagAlign.gz 199991 -45 0.00355533375091573 30 0.003524878 1500 0.003236997 1.098343 1.105791 1 E044-H3K4ME1_subsample-0.1e6.tagAlign.gz 199992 390 0.00354558178990988 40 0.003475502 1500 0.003235048 1.095991 1.291449 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E044-H3K4ME1_subsample-0.25e6.cc.plot.pdf

./E044-H3K4ME1_subsample-0.25e6.cc.plot.pdf

./E044-H3K4ME1_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E044-H3K4ME1_subsample-0.25e6.tagAlign.gz 499972 235 0.00849428861460738 40 0.008438473 1500 0.007713663 1.1012 1.077007 1 E044-H3K4ME1_subsample-0.25e6.tagAlign.gz 499976 210 0.00850346395231117 30 0.008627279 1500 0.007799199 1.0903 0.8504791 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E044-H3K4ME1_subsample-0.5e6.cc.plot.pdf

./E044-H3K4ME1_subsample-0.5e6.cc.plot.pdf

./E044-H3K4ME1_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E044-H3K4ME1_subsample-0.5e6.tagAlign.gz 999947 225 0.016773051428564 35 0.01692194 1500 0.01539388 1.089592 0.9025609 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E044-H3K4ME1_subsample-1e6.cc.plot.pdf

./E044-H3K4ME1_subsample-1e6.cc.plot.pdf

./E044-H3K4ME1_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E044-H3K4ME1_subsample-1e6.tagAlign.gz 1999895 195 0.0328866487210299 35 0.03305942 1500 0.03031426 1.084857 0.9370623 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E044-H3K4ME1_subsample-2.5e6.cc.plot.pdf

./E044-H3K4ME1_subsample-2.5e6.cc.plot.pdf

./E044-H3K4ME1_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E044-H3K4ME1_subsample-2.5e6.tagAlign.gz 4999722 215 0.077964387070502 35 0.07846434 1500 0.07155151 1.089626 0.9276776 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E044-H3K4ME1_subsample-5e6.cc.plot.pdf

./E044-H3K4ME1_subsample-5e6.cc.plot.pdf

./E044-H3K4ME1_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E044-H3K4ME1_subsample-5e6.tagAlign.gz 9999444 215 0.143398095717829 35 0.144325 1500 0.1316522 1.089219 0.9268621 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E044-H3K4ME1_subsample-7.5e6.cc.plot.pdf

./E044-H3K4ME1_subsample-7.5e6.cc.plot.pdf

./E044-H3K4ME1_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E044-H3K4ME1_subsample-7.5e6.tagAlign.gz 14999178 205 0.199409349797673 35 0.2006995 1500 0.1831072 1.089031 0.9266665 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E044-H3K4ME3_merged.cc.plot.pdf

./E044-H3K4ME3_merged.cc.plot.pdf

./E044-H3K4ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E044-H3K4ME3_merged.tagAlign.gz 15079188 230 0.409533387699929 35 0.3647428 1500 0.2036286 2.011178 1.278005 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E044-H3K4ME3_subsample-0.1e6.cc.plot.pdf

./E044-H3K4ME3_subsample-0.1e6.cc.plot.pdf

./E044-H3K4ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E044-H3K4ME3_subsample-0.1e6.tagAlign.gz 199995 255 0.00970866860967542 35 0.008689585 1500 0.004730542 2.052338 1.257407 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E044-H3K4ME3_subsample-0.25e6.cc.plot.pdf

./E044-H3K4ME3_subsample-0.25e6.cc.plot.pdf

./E044-H3K4ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E044-H3K4ME3_subsample-0.25e6.tagAlign.gz 499987 265 0.0234164240533788 40 0.02089605 1500 0.01144198 2.046536 1.266591 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E044-H3K4ME3_subsample-0.5e6.cc.plot.pdf

./E044-H3K4ME3_subsample-0.5e6.cc.plot.pdf

./E044-H3K4ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E044-H3K4ME3_subsample-0.5e6.tagAlign.gz 999981 225 0.0455162331471908 35 0.04040761 1500 0.02255315 2.018176 1.286126 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E044-H3K4ME3_subsample-1e6.cc.plot.pdf

./E044-H3K4ME3_subsample-1e6.cc.plot.pdf

./E044-H3K4ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E044-H3K4ME3_subsample-1e6.tagAlign.gz 1999945 230 0.0867815423602935 35 0.07728059 1500 0.04310447 2.013284 1.278 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E044-H3K4ME3_subsample-2.5e6.cc.plot.pdf

./E044-H3K4ME3_subsample-2.5e6.cc.plot.pdf

./E044-H3K4ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E044-H3K4ME3_subsample-2.5e6.tagAlign.gz 4999868 220 0.19041769142965 35 0.1692573 1500 0.09464018 2.012017 1.283586 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E044-H3K4ME3_subsample-5e6.cc.plot.pdf

./E044-H3K4ME3_subsample-5e6.cc.plot.pdf

./E044-H3K4ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E044-H3K4ME3_subsample-5e6.tagAlign.gz 9999731 230 0.317086716234887 35 0.2826482 1500 0.1575854 2.012158 1.27537 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E044-H3K4ME3_subsample-7.5e6.cc.plot.pdf

./E044-H3K4ME3_subsample-7.5e6.cc.plot.pdf

./E044-H3K4ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E044-H3K4ME3_subsample-7.5e6.tagAlign.gz 14999610 230 0.408308693675739 35 0.3636002 1500 0.2029875 2.011497 1.278362 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E044-H3K9ME3_merged.cc.plot.pdf

./E044-H3K9ME3_merged.cc.plot.pdf

./E044-H3K9ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E044-H3K9ME3_merged.tagAlign.gz 38390180 225 0.35357520221411 35 0.3782767 1500 0.3453483 1.023822 0.2498418 -2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E044-H3K9ME3_subsample-0.1e6.cc.plot.pdf

./E044-H3K9ME3_subsample-0.1e6.cc.plot.pdf

./E044-H3K9ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E044-H3K9ME3_subsample-0.1e6.tagAlign.gz 199999 200 0.00333318439075654 40 0.003261906 1500 0.003146832 1.059219 1.619409 2 E044-H3K9ME3_subsample-0.1e6.tagAlign.gz 199999 1220 0.00328051426008133 40 0.003346327 1500 0.003091665 1.061083 0.741567 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E044-H3K9ME3_subsample-0.25e6.cc.plot.pdf

./E044-H3K9ME3_subsample-0.25e6.cc.plot.pdf

./E044-H3K9ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E044-H3K9ME3_subsample-0.25e6.tagAlign.gz 499996 175 0.00756553529660732 35 0.007905455 1500 0.007266232 1.041191 0.4682295 -1 E044-H3K9ME3_subsample-0.25e6.tagAlign.gz 499987 260 0.00753849308985549 35 0.007926405 1500 0.007272664 1.036552 0.4066273 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E044-H3K9ME3_subsample-0.5e6.cc.plot.pdf

./E044-H3K9ME3_subsample-0.5e6.cc.plot.pdf

./E044-H3K9ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E044-H3K9ME3_subsample-0.5e6.tagAlign.gz 999981 50 0.0150950645235379 35 0.01582982 1500 0.01430619 1.055142 0.5177574 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E044-H3K9ME3_subsample-10e6.cc.plot.pdf

./E044-H3K9ME3_subsample-10e6.cc.plot.pdf

./E044-H3K9ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E044-H3K9ME3_subsample-10e6.tagAlign.gz 19999720 230 0.225315034734887 35 0.2414024 1500 0.2201348 1.023532 0.2435753 -2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E044-H3K9ME3_subsample-1e6.cc.plot.pdf

./E044-H3K9ME3_subsample-1e6.cc.plot.pdf

./E044-H3K9ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E044-H3K9ME3_subsample-1e6.tagAlign.gz 1999977 210 0.0290585465906472 35 0.03104363 1500 0.02827873 1.027576 0.2820421 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E044-H3K9ME3_subsample-2.5e6.cc.plot.pdf

./E044-H3K9ME3_subsample-2.5e6.cc.plot.pdf

./E044-H3K9ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E044-H3K9ME3_subsample-2.5e6.tagAlign.gz 4999917 230 0.0690601215999579 35 0.0740151 1500 0.06743952 1.02403 0.2464575 -2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E044-H3K9ME3_subsample-5e6.cc.plot.pdf

./E044-H3K9ME3_subsample-5e6.cc.plot.pdf

./E044-H3K9ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E044-H3K9ME3_subsample-5e6.tagAlign.gz 9999852 225 0.12837165369343 35 0.1378431 1500 0.1253093 1.024438 0.244327 -2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E044-H3K9ME3_subsample-7.5e6.cc.plot.pdf

./E044-H3K9ME3_subsample-7.5e6.cc.plot.pdf

./E044-H3K9ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E044-H3K9ME3_subsample-7.5e6.tagAlign.gz 14999789 215 0.179905091114341 35 0.1929448 1500 0.1756724 1.024094 0.2450543 -2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E045-H3K27AC_merged.cc.plot.pdf

./E045-H3K27AC_merged.cc.plot.pdf

./E045-H3K27AC_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E045-H3K27AC_merged.tagAlign.gz 16065925 200 0.300557060737363 35 0.2728443 1500 0.2069202 1.452526 1.420374 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E045-H3K27AC_subsample-0.1e6.cc.plot.pdf

./E045-H3K27AC_subsample-0.1e6.cc.plot.pdf

./E045-H3K27AC_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E045-H3K27AC_subsample-0.1e6.tagAlign.gz 199991 260 0.00589838482405145 40 0.005033881 1500 0.003791479 1.555695 1.695832 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E045-H3K27AC_subsample-5e6.cc.plot.pdf

./E045-H3K27AC_subsample-5e6.cc.plot.pdf

./E045-H3K27AC_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E045-H3K27AC_subsample-5e6.tagAlign.gz 9999673 200 0.211851857110248 35 0.1920881 1500 0.1457184 1.453844 1.426221 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E045-H3K27ME3_merged.cc.plot.pdf

./E045-H3K27ME3_merged.cc.plot.pdf

./E045-H3K27ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E045-H3K27ME3_merged.tagAlign.gz 20213184 195 0.224688776187732 35 0.2272738 1500 0.2163174 1.038699 0.7640642 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E045-H3K27ME3_subsample-0.1e6.cc.plot.pdf

./E045-H3K27ME3_subsample-0.1e6.cc.plot.pdf

./E045-H3K27ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E045-H3K27ME3_subsample-0.1e6.tagAlign.gz 199997 1185 0.00325088543046354 35 0.003174382 1500 0.003023145 1.075332 1.505847 2 E045-H3K27ME3_subsample-0.1e6.tagAlign.gz 199996 1295 0.00324303290688 30 0.003173948 1500 0.003010909 1.077094 1.423732 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E045-H3K27ME3_subsample-0.25e6.cc.plot.pdf

./E045-H3K27ME3_subsample-0.25e6.cc.plot.pdf

./E045-H3K27ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E045-H3K27ME3_subsample-0.25e6.tagAlign.gz 499980 195 0.00733344441435825 35 0.00731165 1500 0.006960386 1.053597 1.062047 1 E045-H3K27ME3_subsample-0.25e6.tagAlign.gz 499984 175 0.00730821557420101 35 0.007383482 1500 0.006991395 1.045316 0.8080371 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E045-H3K27ME3_subsample-0.5e6.cc.plot.pdf

./E045-H3K27ME3_subsample-0.5e6.cc.plot.pdf

./E045-H3K27ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E045-H3K27ME3_subsample-0.5e6.tagAlign.gz 999973 195 0.0143736485184826 35 0.01444354 1500 0.01366832 1.051603 0.9098401 0 E045-H3K27ME3_subsample-0.5e6.tagAlign.gz 999963 170 0.0143320568543361 35 0.01463326 1500 0.01365037 1.049939 0.6935515 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E045-H3K36ME3_merged.cc.plot.pdf

./E045-H3K36ME3_merged.cc.plot.pdf

./E045-H3K36ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E045-H3K36ME3_merged.tagAlign.gz 31791122 220 0.318589549733602 35 0.3260479 1500 0.311546 1.022608 0.4856993 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E045-H3K4ME1_merged.cc.plot.pdf

./E045-H3K4ME1_merged.cc.plot.pdf

./E045-H3K4ME1_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E045-H3K4ME1_merged.tagAlign.gz 18273764 210 0.216520315356816 35 0.2222325 1500 0.2063427 1.049324 0.6405126 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E045-H3K4ME1_subsample-0.1e6.cc.plot.pdf

./E045-H3K4ME1_subsample-0.1e6.cc.plot.pdf

./E045-H3K4ME1_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E045-H3K4ME1_subsample-0.1e6.tagAlign.gz 199989 450 0.00328528289422125 40 0.003312823 1500 0.00312407 1.051603 0.854096 0 E045-H3K4ME1_subsample-0.1e6.tagAlign.gz 199987 265 0.0033568758144366 30 0.003292633 1500 0.00309797 1.083573 1.330023 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E045-H3K4ME1_subsample-7.5e6.cc.plot.pdf

./E045-H3K4ME1_subsample-7.5e6.cc.plot.pdf

./E045-H3K4ME1_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E045-H3K4ME1_subsample-7.5e6.tagAlign.gz 14999120 210 0.185298134267788 35 0.1902103 1500 0.1766115 1.049185 0.6387761 0 E045-H3K4ME1_subsample-7.5e6.tagAlign.gz 14999162 210 0.18534194832181 35 0.1902138 1500 0.1765902 1.049559 0.6423929 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E045-H3K4ME3_merged.cc.plot.pdf

./E045-H3K4ME3_merged.cc.plot.pdf

./E045-H3K4ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E045-H3K4ME3_merged.tagAlign.gz 23905745 220 0.305551716511109 35 0.3021709 1500 0.2483623 1.230266 1.06283 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E045-H3K4ME3_subsample-0.1e6.cc.plot.pdf

./E045-H3K4ME3_subsample-0.1e6.cc.plot.pdf

./E045-H3K4ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E045-H3K4ME3_subsample-0.1e6.tagAlign.gz 199990 190 0.00401624050451547 35 0.003906754 1500 0.003174567 1.26513 1.149534 1 E045-H3K4ME3_subsample-0.1e6.tagAlign.gz 199993 345 0.00392151855437738 35 0.003664301 1500 0.003170462 1.236892 1.520852 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E045-H3K4ME3_subsample-0.25e6.cc.plot.pdf

./E045-H3K4ME3_subsample-0.25e6.cc.plot.pdf

./E045-H3K4ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E045-H3K4ME3_subsample-0.25e6.tagAlign.gz 499979 235 0.00938903658133939 30 0.009201453 1500 0.007531674 1.246607 1.11234 1 E045-H3K4ME3_subsample-0.25e6.tagAlign.gz 499987 230 0.00940060987113677 35 0.009155045 1500 0.00757863 1.24041 1.155774 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E045-H3K4ME3_subsample-0.5e6.cc.plot.pdf

./E045-H3K4ME3_subsample-0.5e6.cc.plot.pdf

./E045-H3K4ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E045-H3K4ME3_subsample-0.5e6.tagAlign.gz 999974 205 0.0185331950321736 35 0.01824996 1500 0.0150344 1.232719 1.088083 1 E045-H3K4ME3_subsample-0.5e6.tagAlign.gz 999963 215 0.0186412386078868 35 0.01810377 1500 0.01488097 1.25269 1.166771 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E045-H3K4ME3_subsample-10e6.cc.plot.pdf

./E045-H3K4ME3_subsample-10e6.cc.plot.pdf

./E045-H3K4ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E045-H3K4ME3_subsample-10e6.tagAlign.gz 19999373 220 0.26957024495418 35 0.2665762 1500 0.2190569 1.230595 1.063008 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E045-H3K4ME3_subsample-1e6.cc.plot.pdf

./E045-H3K4ME3_subsample-1e6.cc.plot.pdf

./E045-H3K4ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E045-H3K4ME3_subsample-1e6.tagAlign.gz 1999922 205 0.0362139920107557 35 0.0357314 1500 0.0292564 1.237814 1.074531 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E045-H3K4ME3_subsample-2.5e6.cc.plot.pdf

./E045-H3K4ME3_subsample-2.5e6.cc.plot.pdf

./E045-H3K4ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E045-H3K4ME3_subsample-2.5e6.tagAlign.gz 4999838 210 0.085447580324883 35 0.08468187 1500 0.06949125 1.229616 1.050407 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E045-H3K4ME3_subsample-5e6.cc.plot.pdf

./E045-H3K4ME3_subsample-5e6.cc.plot.pdf

./E045-H3K4ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E045-H3K4ME3_subsample-5e6.tagAlign.gz 9999692 210 0.156752945600696 35 0.1551278 1500 0.1273595 1.230791 1.058526 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E045-H3K4ME3_subsample-7.5e6.cc.plot.pdf

./E045-H3K4ME3_subsample-7.5e6.cc.plot.pdf

./E045-H3K4ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E045-H3K4ME3_subsample-7.5e6.tagAlign.gz 14999543 220 0.217416760508771 35 0.2151043 1500 0.1765867 1.231218 1.060037 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E045-H3K9ME3_merged.cc.plot.pdf

./E045-H3K9ME3_merged.cc.plot.pdf

./E045-H3K9ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E045-H3K9ME3_merged.tagAlign.gz 26489206 225 0.270823220460567 35 0.2906274 1500 0.2647681 1.022869 0.2341562 -2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E045-H3K9ME3_subsample-0.1e6.cc.plot.pdf

./E045-H3K9ME3_subsample-0.1e6.cc.plot.pdf

./E045-H3K9ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E045-H3K9ME3_subsample-0.1e6.tagAlign.gz 199998 495 0.00327260824401948 40 0.003190832 1500 0.003010833 1.086945 1.454314 1 E045-H3K9ME3_subsample-0.1e6.tagAlign.gz 199994 165 0.00326364494348639 35 0.003299608 1500 0.003040885 1.073255 0.8609978 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E045-H3K9ME3_subsample-0.25e6.cc.plot.pdf

./E045-H3K9ME3_subsample-0.25e6.cc.plot.pdf

./E045-H3K9ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E045-H3K9ME3_subsample-0.25e6.tagAlign.gz 499981 120 0.00727952325575014 35 0.007623855 1500 0.007086104 1.027296 0.3596823 -1 E045-H3K9ME3_subsample-0.25e6.tagAlign.gz 499983 65 0.00729398830980827 35 0.007796091 1500 0.007077043 1.030655 0.3017115 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E045-H3K9ME3_subsample-0.5e6.cc.plot.pdf

./E045-H3K9ME3_subsample-0.5e6.cc.plot.pdf

./E045-H3K9ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E045-H3K9ME3_subsample-0.5e6.tagAlign.gz 999973 295 0.0142563714945656 35 0.0153006 1500 0.01390863 1.025002 0.2498208 -2 E045-H3K9ME3_subsample-0.5e6.tagAlign.gz 999964 205 0.0143407424244213 35 0.01534785 1500 0.01391169 1.030841 0.298751 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E045-H3K9ME3_subsample-10e6.cc.plot.pdf

./E045-H3K9ME3_subsample-10e6.cc.plot.pdf

./E045-H3K9ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E045-H3K9ME3_subsample-10e6.tagAlign.gz 19999468 225 0.220169278789915 35 0.2364236 1500 0.215227 1.022963 0.2331659 -2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E045-H3K9ME3_subsample-1e6.cc.plot.pdf

./E045-H3K9ME3_subsample-1e6.cc.plot.pdf

./E045-H3K9ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E045-H3K9ME3_subsample-1e6.tagAlign.gz 1999933 210 0.0280431843762169 35 0.03013855 1500 0.02727804 1.02805 0.2674859 -1 E045-H3K9ME3_subsample-1e6.tagAlign.gz 1999945 240 0.0281875545455013 35 0.03024608 1500 0.02739649 1.028875 0.2776073 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E045-H3K9ME3_subsample-2.5e6.cc.plot.pdf

./E045-H3K9ME3_subsample-2.5e6.cc.plot.pdf

./E045-H3K9ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E045-H3K9ME3_subsample-2.5e6.tagAlign.gz 4999876 215 0.067043006156387 35 0.07217138 1500 0.06542677 1.024703 0.2396335 -2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E045-H3K9ME3_subsample-5e6.cc.plot.pdf

./E045-H3K9ME3_subsample-5e6.cc.plot.pdf

./E045-H3K9ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E045-H3K9ME3_subsample-5e6.tagAlign.gz 9999715 230 0.124958254630851 35 0.1344721 1500 0.122073 1.023635 0.2326972 -2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E045-H3K9ME3_subsample-7.5e6.cc.plot.pdf

./E045-H3K9ME3_subsample-7.5e6.cc.plot.pdf

./E045-H3K9ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E045-H3K9ME3_subsample-7.5e6.tagAlign.gz 14999607 225 0.175595910454924 35 0.188588 1500 0.1716252 1.023136 0.2340853 -2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E046-H3K27AC_merged.cc.plot.pdf

./E046-H3K27AC_merged.cc.plot.pdf

./E046-H3K27AC_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E046-H3K27AC_merged.tagAlign.gz 26442225 175 0.501358457981543 40 0.4556883 1500 0.3042337 1.647939 1.301544 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E046-H3K27AC_subsample-0.1e6.cc.plot.pdf

./E046-H3K27AC_subsample-0.1e6.cc.plot.pdf

./E046-H3K27AC_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E046-H3K27AC_subsample-0.1e6.tagAlign.gz 199956 185 0.00735094364170709 30 0.006546962 1500 0.004471548 1.643937 1.387384 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E046-H3K27AC_subsample-0.25e6.cc.plot.pdf

./E046-H3K27AC_subsample-0.25e6.cc.plot.pdf

./E046-H3K27AC_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E046-H3K27AC_subsample-0.25e6.tagAlign.gz 499913 195 0.0179053385749798 35 0.01616403 1500 0.01082046 1.654767 1.32587 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E046-H3K27AC_subsample-0.5e6.cc.plot.pdf

./E046-H3K27AC_subsample-0.5e6.cc.plot.pdf

./E046-H3K27AC_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E046-H3K27AC_subsample-0.5e6.tagAlign.gz 999771 190 0.0351107293716709 40 0.0318894 1500 0.02079661 1.688291 1.290399 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E046-H3K27AC_subsample-10e6.cc.plot.pdf

./E046-H3K27AC_subsample-10e6.cc.plot.pdf

./E046-H3K27AC_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E046-H3K27AC_subsample-10e6.tagAlign.gz 19995977 175 0.427691353601253 40 0.3886842 1500 0.2593367 1.649174 1.301568 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E046-H3K27AC_subsample-1e6.cc.plot.pdf

./E046-H3K27AC_subsample-1e6.cc.plot.pdf

./E046-H3K27AC_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E046-H3K27AC_subsample-1e6.tagAlign.gz 1999578 175 0.0666693787675059 35 0.06077046 1500 0.04039386 1.650483 1.289495 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E046-H3K27AC_subsample-2.5e6.cc.plot.pdf

./E046-H3K27AC_subsample-2.5e6.cc.plot.pdf

./E046-H3K27AC_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E046-H3K27AC_subsample-2.5e6.tagAlign.gz 4998959 170 0.15284609956791 40 0.1387447 1500 0.09247928 1.65276 1.304794 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E046-H3K27AC_subsample-5e6.cc.plot.pdf

./E046-H3K27AC_subsample-5e6.cc.plot.pdf

./E046-H3K27AC_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E046-H3K27AC_subsample-5e6.tagAlign.gz 9997938 175 0.266711168320656 40 0.2427128 1500 0.161834 1.648054 1.296721 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E046-H3K27AC_subsample-7.5e6.cc.plot.pdf

./E046-H3K27AC_subsample-7.5e6.cc.plot.pdf

./E046-H3K27AC_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E046-H3K27AC_subsample-7.5e6.tagAlign.gz 14996999 170 0.356242558025823 40 0.3234662 1500 0.2160575 1.648832 1.305155 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E046-H3K27ME3_merged.cc.plot.pdf

./E046-H3K27ME3_merged.cc.plot.pdf

./E046-H3K27ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E046-H3K27ME3_merged.tagAlign.gz 28108586 160 0.290058848185355 35 0.2930773 1500 0.2855053 1.015949 0.6013653 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E046-H3K27ME3_subsample-0.1e6.cc.plot.pdf

./E046-H3K27ME3_subsample-0.1e6.cc.plot.pdf

./E046-H3K27ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E046-H3K27ME3_subsample-0.1e6.tagAlign.gz 199995 920 0.00328080965043197 30 0.00317344 1500 0.003098728 1.05876 2.437118 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E046-H3K27ME3_subsample-0.25e6.cc.plot.pdf

./E046-H3K27ME3_subsample-0.25e6.cc.plot.pdf

./E046-H3K27ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E046-H3K27ME3_subsample-0.25e6.tagAlign.gz 499983 130 0.0073320146036862 35 0.00724938 1500 0.007191006 1.019609 2.415591 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E046-H3K27ME3_subsample-0.5e6.cc.plot.pdf

./E046-H3K27ME3_subsample-0.5e6.cc.plot.pdf

./E046-H3K27ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E046-H3K27ME3_subsample-0.5e6.tagAlign.gz 999974 50 0.0144883780909987 35 0.0145259 1500 0.01415315 1.023686 0.8993496 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E046-H3K27ME3_subsample-10e6.cc.plot.pdf

./E046-H3K27ME3_subsample-10e6.cc.plot.pdf

./E046-H3K27ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E046-H3K27ME3_subsample-10e6.tagAlign.gz 19999483 165 0.225289881343914 35 0.227619 1500 0.2217231 1.016087 0.6049603 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E046-H3K27ME3_subsample-1e6.cc.plot.pdf

./E046-H3K27ME3_subsample-1e6.cc.plot.pdf

./E046-H3K27ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E046-H3K27ME3_subsample-1e6.tagAlign.gz 1999949 150 0.0283708203281382 35 0.02868413 1500 0.02772096 1.023443 0.6747085 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E046-H3K27ME3_subsample-2.5e6.cc.plot.pdf

./E046-H3K27ME3_subsample-2.5e6.cc.plot.pdf

./E046-H3K27ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E046-H3K27ME3_subsample-2.5e6.tagAlign.gz 4999864 170 0.0679084155874709 35 0.06854741 1500 0.06676192 1.017173 0.6421192 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E046-H3K27ME3_subsample-5e6.cc.plot.pdf

./E046-H3K27ME3_subsample-5e6.cc.plot.pdf

./E046-H3K27ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E046-H3K27ME3_subsample-5e6.tagAlign.gz 9999716 150 0.127067702088639 35 0.1282708 1500 0.1250554 1.016091 0.6258411 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E046-H3K27ME3_subsample-7.5e6.cc.plot.pdf

./E046-H3K27ME3_subsample-7.5e6.cc.plot.pdf

./E046-H3K27ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E046-H3K27ME3_subsample-7.5e6.tagAlign.gz 14999614 170 0.179142055693493 35 0.1809069 1500 0.1762583 1.016361 0.6203558 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E046-H3K36ME3_merged.cc.plot.pdf

./E046-H3K36ME3_merged.cc.plot.pdf

./E046-H3K36ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E046-H3K36ME3_merged.tagAlign.gz 33892507 160 0.364049260315495 35 0.3688045 1500 0.3538815 1.028732 0.6813469 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E046-H3K36ME3_subsample-0.1e6.cc.plot.pdf

./E046-H3K36ME3_subsample-0.1e6.cc.plot.pdf

./E046-H3K36ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E046-H3K36ME3_subsample-0.1e6.tagAlign.gz 199995 335 0.00362078658973125 40 0.00355989 1500 0.003490363 1.037367 1.875861 2 E046-H3K36ME3_subsample-0.1e6.tagAlign.gz 199996 -90 0.00364902924302403 35 0.003404366 1500 0.00324336 1.125077 2.519601 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E046-H3K36ME3_subsample-0.25e6.cc.plot.pdf

./E046-H3K36ME3_subsample-0.25e6.cc.plot.pdf

./E046-H3K36ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E046-H3K36ME3_subsample-0.25e6.tagAlign.gz 499984 155 0.00857207951459204 35 0.008615191 1500 0.008182717 1.047584 0.9003145 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E046-H3K36ME3_subsample-0.5e6.cc.plot.pdf

./E046-H3K36ME3_subsample-0.5e6.cc.plot.pdf

./E046-H3K36ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E046-H3K36ME3_subsample-0.5e6.tagAlign.gz 999980 215 0.0168274370933584 30 0.01692158 1500 0.01615984 1.041312 0.8764129 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E046-H3K36ME3_subsample-10e6.cc.plot.pdf

./E046-H3K36ME3_subsample-10e6.cc.plot.pdf

./E046-H3K36ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E046-H3K36ME3_subsample-10e6.tagAlign.gz 19999382 160 0.252499602199047 35 0.2558016 1500 0.2454384 1.02877 0.6813726 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E046-H3K36ME3_subsample-1e6.cc.plot.pdf

./E046-H3K36ME3_subsample-1e6.cc.plot.pdf

./E046-H3K36ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E046-H3K36ME3_subsample-1e6.tagAlign.gz 1999939 195 0.0329479075967532 35 0.03320373 1500 0.03186363 1.034029 0.8090992 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E046-H3K36ME3_subsample-2.5e6.cc.plot.pdf

./E046-H3K36ME3_subsample-2.5e6.cc.plot.pdf

./E046-H3K36ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E046-H3K36ME3_subsample-2.5e6.tagAlign.gz 4999842 160 0.0780908539814604 35 0.0791137 1500 0.07587639 1.029185 0.6840443 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E046-H3K36ME3_subsample-5e6.cc.plot.pdf

./E046-H3K36ME3_subsample-5e6.cc.plot.pdf

./E046-H3K36ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E046-H3K36ME3_subsample-5e6.tagAlign.gz 9999710 180 0.144840688510862 35 0.1464806 1500 0.1405891 1.030241 0.7216445 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E046-H3K36ME3_subsample-7.5e6.cc.plot.pdf

./E046-H3K36ME3_subsample-7.5e6.cc.plot.pdf

./E046-H3K36ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E046-H3K36ME3_subsample-7.5e6.tagAlign.gz 14999555 145 0.20221916179587 35 0.204838 1500 0.1966025 1.028569 0.6820055 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E046-H3K4ME1_merged.cc.plot.pdf

./E046-H3K4ME1_merged.cc.plot.pdf

./E046-H3K4ME1_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E046-H3K4ME1_merged.tagAlign.gz 22437041 195 0.410468643283238 35 0.3824009 1500 0.3069145 1.337404 1.371825 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E046-H3K4ME1_subsample-0.1e6.cc.plot.pdf

./E046-H3K4ME1_subsample-0.1e6.cc.plot.pdf

./E046-H3K4ME1_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E046-H3K4ME1_subsample-0.1e6.tagAlign.gz 199995 215 0.00651520991885285 40 0.005998349 1500 0.004864277 1.339399 1.455757 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E046-H3K4ME1_subsample-0.25e6.cc.plot.pdf

./E046-H3K4ME1_subsample-0.25e6.cc.plot.pdf

./E046-H3K4ME1_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E046-H3K4ME1_subsample-0.25e6.tagAlign.gz 499990 220 0.0155766823054358 30 0.01432555 1500 0.01170802 1.330428 1.477984 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E046-H3K4ME1_subsample-0.5e6.cc.plot.pdf

./E046-H3K4ME1_subsample-0.5e6.cc.plot.pdf

./E046-H3K4ME1_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E046-H3K4ME1_subsample-0.5e6.tagAlign.gz 999976 205 0.0303873387517478 40 0.02808498 1500 0.02279441 1.333105 1.435182 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E046-H3K4ME1_subsample-10e6.cc.plot.pdf

./E046-H3K4ME1_subsample-10e6.cc.plot.pdf

./E046-H3K4ME1_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E046-H3K4ME1_subsample-10e6.tagAlign.gz 19999515 195 0.382587255611088 35 0.3564605 1500 0.2861936 1.336813 1.371822 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E046-H3K4ME1_subsample-1e6.cc.plot.pdf

./E046-H3K4ME1_subsample-1e6.cc.plot.pdf

./E046-H3K4ME1_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E046-H3K4ME1_subsample-1e6.tagAlign.gz 1999969 195 0.058705141572117 40 0.05444716 1500 0.04371945 1.342769 1.396914 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E046-H3K4ME1_subsample-2.5e6.cc.plot.pdf

./E046-H3K4ME1_subsample-2.5e6.cc.plot.pdf

./E046-H3K4ME1_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E046-H3K4ME1_subsample-2.5e6.tagAlign.gz 4999858 195 0.133783818243481 35 0.1247934 1500 0.10033 1.333438 1.367503 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E046-H3K4ME1_subsample-5e6.cc.plot.pdf

./E046-H3K4ME1_subsample-5e6.cc.plot.pdf

./E046-H3K4ME1_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E046-H3K4ME1_subsample-5e6.tagAlign.gz 9999757 200 0.235795677972872 35 0.2201117 1500 0.1768597 1.333236 1.362618 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E046-H3K4ME1_subsample-7.5e6.cc.plot.pdf

./E046-H3K4ME1_subsample-7.5e6.cc.plot.pdf

./E046-H3K4ME1_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E046-H3K4ME1_subsample-7.5e6.tagAlign.gz 14999635 190 0.316698230877425 35 0.2951844 1500 0.2372039 1.335131 1.371053 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E046-H3K4ME3_merged.cc.plot.pdf

./E046-H3K4ME3_merged.cc.plot.pdf

./E046-H3K4ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E046-H3K4ME3_merged.tagAlign.gz 21938055 195 0.458324855242459 40 0.3944678 1500 0.2267596 2.021193 1.380762 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E046-H3K4ME3_subsample-0.1e6.cc.plot.pdf

./E046-H3K4ME3_subsample-0.1e6.cc.plot.pdf

./E046-H3K4ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E046-H3K4ME3_subsample-0.1e6.tagAlign.gz 199992 230 0.00757394474732556 40 0.006542096 1500 0.003677171 2.059721 1.360166 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E046-H3K4ME3_subsample-0.25e6.cc.plot.pdf

./E046-H3K4ME3_subsample-0.25e6.cc.plot.pdf

./E046-H3K4ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E046-H3K4ME3_subsample-0.25e6.tagAlign.gz 499976 190 0.0181976684036171 40 0.01554791 1500 0.008854445 2.055202 1.395873 1 E046-H3K4ME3_subsample-0.25e6.tagAlign.gz 499970 195 0.018510541377428 35 0.01560262 1500 0.008850424 2.091486 1.430664 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E046-H3K4ME3_subsample-0.5e6.cc.plot.pdf

./E046-H3K4ME3_subsample-0.5e6.cc.plot.pdf

./E046-H3K4ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E046-H3K4ME3_subsample-0.5e6.tagAlign.gz 999931 210 0.0355159098610982 40 0.03069495 1500 0.01744223 2.036203 1.363771 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E046-H3K4ME3_subsample-10e6.cc.plot.pdf

./E046-H3K4ME3_subsample-10e6.cc.plot.pdf

./E046-H3K4ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E046-H3K4ME3_subsample-10e6.tagAlign.gz 19998725 195 0.434142743344819 40 0.3736569 1500 0.214727 2.021836 1.380582 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E046-H3K4ME3_subsample-1e6.cc.plot.pdf

./E046-H3K4ME3_subsample-1e6.cc.plot.pdf

./E046-H3K4ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E046-H3K4ME3_subsample-1e6.tagAlign.gz 1999900 190 0.0688584528080646 40 0.05898828 1500 0.03381876 2.036102 1.392148 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E046-H3K4ME3_subsample-2.5e6.cc.plot.pdf

./E046-H3K4ME3_subsample-2.5e6.cc.plot.pdf

./E046-H3K4ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E046-H3K4ME3_subsample-2.5e6.tagAlign.gz 4999704 195 0.155964128759821 40 0.1339969 1500 0.07690965 2.027888 1.384802 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E046-H3K4ME3_subsample-5e6.cc.plot.pdf

./E046-H3K4ME3_subsample-5e6.cc.plot.pdf

./E046-H3K4ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E046-H3K4ME3_subsample-5e6.tagAlign.gz 9999329 195 0.272102371908802 40 0.2341036 1500 0.1344303 2.024114 1.381234 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E046-H3K4ME3_subsample-7.5e6.cc.plot.pdf

./E046-H3K4ME3_subsample-7.5e6.cc.plot.pdf

./E046-H3K4ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E046-H3K4ME3_subsample-7.5e6.tagAlign.gz 14999037 190 0.361983739982285 40 0.3114694 1500 0.178993 2.022335 1.381309 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E046-H3K9ME3_merged.cc.plot.pdf

./E046-H3K9ME3_merged.cc.plot.pdf

./E046-H3K9ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E046-H3K9ME3_merged.tagAlign.gz 16242228 180 0.204642489260887 35 0.2174082 1500 0.1867082 1.096055 0.5841788 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E046-H3K9ME3_subsample-0.1e6.cc.plot.pdf

./E046-H3K9ME3_subsample-0.1e6.cc.plot.pdf

./E046-H3K9ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E046-H3K9ME3_subsample-0.1e6.tagAlign.gz 199989 165 0.00340978537469165 40 0.003523069 1500 0.003164487 1.077516 0.6840794 0 E046-H3K9ME3_subsample-0.1e6.tagAlign.gz 199991 200 0.00350984498722939 35 0.003583456 1500 0.003081135 1.13914 0.8534577 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E046-H3K9ME3_subsample-0.25e6.cc.plot.pdf

./E046-H3K9ME3_subsample-0.25e6.cc.plot.pdf

./E046-H3K9ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E046-H3K9ME3_subsample-0.25e6.tagAlign.gz 499980 165 0.0081977526392271 35 0.008585191 1500 0.007317744 1.120257 0.694316 0 E046-H3K9ME3_subsample-0.25e6.tagAlign.gz 499976 170 0.00817286221060692 35 0.008607129 1500 0.007320681 1.116407 0.6624296 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E046-H3K9ME3_subsample-0.5e6.cc.plot.pdf

./E046-H3K9ME3_subsample-0.5e6.cc.plot.pdf

./E046-H3K9ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E046-H3K9ME3_subsample-0.5e6.tagAlign.gz 999945 150 0.0160433473993282 35 0.01710451 1500 0.01457265 1.100922 0.5808771 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E046-H3K9ME3_subsample-1e6.cc.plot.pdf

./E046-H3K9ME3_subsample-1e6.cc.plot.pdf

./E046-H3K9ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E046-H3K9ME3_subsample-1e6.tagAlign.gz 1999894 175 0.0314063708930071 35 0.03329362 1500 0.02860397 1.097972 0.5975709 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E046-H3K9ME3_subsample-2.5e6.cc.plot.pdf

./E046-H3K9ME3_subsample-2.5e6.cc.plot.pdf

./E046-H3K9ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E046-H3K9ME3_subsample-2.5e6.tagAlign.gz 4999715 170 0.0744546671482891 35 0.07921203 1500 0.06792699 1.096098 0.5784363 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E046-H3K9ME3_subsample-5e6.cc.plot.pdf

./E046-H3K9ME3_subsample-5e6.cc.plot.pdf

./E046-H3K9ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E046-H3K9ME3_subsample-5e6.tagAlign.gz 9999407 180 0.137730529442347 35 0.1465491 1500 0.1256383 1.096247 0.5782764 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E046-H3K9ME3_subsample-7.5e6.cc.plot.pdf

./E046-H3K9ME3_subsample-7.5e6.cc.plot.pdf

./E046-H3K9ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E046-H3K9ME3_subsample-7.5e6.tagAlign.gz 14999162 180 0.192231865869305 35 0.2042206 1500 0.1753743 1.096123 0.5843912 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E047-H3K27AC_merged.cc.plot.pdf

./E047-H3K27AC_merged.cc.plot.pdf

./E047-H3K27AC_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E047-H3K27AC_merged.tagAlign.gz 34949542 225 0.41026099823234 35 0.380631 1500 0.3160443 1.298112 1.458764 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E047-H3K27AC_subsample-0.1e6.cc.plot.pdf

./E047-H3K27AC_subsample-0.1e6.cc.plot.pdf

./E047-H3K27AC_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E047-H3K27AC_subsample-0.1e6.tagAlign.gz 199992 265 0.00421494408488674 30 0.003885993 1500 0.003088719 1.364625 1.412596 1 E047-H3K27AC_subsample-0.1e6.tagAlign.gz 199993 235 0.00434241291213403 40 0.003648731 1500 0.003111297 1.395692 2.290731 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E047-H3K27AC_subsample-0.25e6.cc.plot.pdf

./E047-H3K27AC_subsample-0.25e6.cc.plot.pdf

./E047-H3K27AC_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E047-H3K27AC_subsample-0.25e6.tagAlign.gz 499970 220 0.0101514564802141 35 0.009217693 1500 0.007671302 1.323303 1.603834 2 E047-H3K27AC_subsample-0.25e6.tagAlign.gz 499980 235 0.0102922209864409 35 0.009243018 1500 0.007714868 1.334076 1.686584 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E047-H3K27AC_subsample-0.5e6.cc.plot.pdf

./E047-H3K27AC_subsample-0.5e6.cc.plot.pdf

./E047-H3K27AC_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E047-H3K27AC_subsample-0.5e6.tagAlign.gz 999950 210 0.0199159168925135 35 0.01825603 1500 0.015264 1.304764 1.554767 2 E047-H3K27AC_subsample-0.5e6.tagAlign.gz 999954 230 0.0199225735647753 40 0.01872102 1500 0.01524914 1.306472 1.346081 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E047-H3K27AC_subsample-10e6.cc.plot.pdf

./E047-H3K27AC_subsample-10e6.cc.plot.pdf

./E047-H3K27AC_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E047-H3K27AC_subsample-10e6.tagAlign.gz 19998901 235 0.285907323449809 35 0.2651589 1500 0.2200921 1.299035 1.460392 1 E047-H3K27AC_subsample-10e6.tagAlign.gz 19998891 235 0.285962090574764 35 0.265147 1500 0.220175 1.298795 1.462846 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E047-H3K27AC_subsample-1e6.cc.plot.pdf

./E047-H3K27AC_subsample-1e6.cc.plot.pdf

./E047-H3K27AC_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E047-H3K27AC_subsample-1e6.tagAlign.gz 1999890 215 0.0389633336260549 35 0.03588943 1500 0.02996675 1.300219 1.519005 2 E047-H3K27AC_subsample-1e6.tagAlign.gz 1999890 215 0.0389633336260549 35 0.03588943 1500 0.02996675 1.300219 1.519005 2 E047-H3K27AC_subsample-1e6.tagAlign.gz 1999889 210 0.0389868662290015 35 0.03609279 1500 0.02985851 1.305721 1.46422 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E047-H3K27AC_subsample-2.5e6.cc.plot.pdf

./E047-H3K27AC_subsample-2.5e6.cc.plot.pdf

./E047-H3K27AC_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E047-H3K27AC_subsample-2.5e6.tagAlign.gz 4999757 220 0.0916923968141034 35 0.08488539 1500 0.07045961 1.301347 1.471864 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E047-H3K27AC_subsample-5e6.cc.plot.pdf

./E047-H3K27AC_subsample-5e6.cc.plot.pdf

./E047-H3K27AC_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E047-H3K27AC_subsample-5e6.tagAlign.gz 9999459 225 0.167559895639922 35 0.1552882 1500 0.1287918 1.301013 1.463146 1 E047-H3K27AC_subsample-5e6.tagAlign.gz 9999476 235 0.16756094416028 35 0.1551556 1500 0.1288684 1.300249 1.471914 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E047-H3K27AC_subsample-7.5e6.cc.plot.pdf

./E047-H3K27AC_subsample-7.5e6.cc.plot.pdf

./E047-H3K27AC_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E047-H3K27AC_subsample-7.5e6.tagAlign.gz 14999193 230 0.231377846869212 35 0.2142695 1500 0.1779414 1.300303 1.470939 1 E047-H3K27AC_subsample-7.5e6.tagAlign.gz 14999165 235 0.231458706259133 35 0.2145415 1500 0.1779883 1.300415 1.462809 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E047-H3K27ME3_merged.cc.plot.pdf

./E047-H3K27ME3_merged.cc.plot.pdf

./E047-H3K27ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E047-H3K27ME3_merged.tagAlign.gz 49936456 155 0.41329103181111 35 0.4147035 1500 0.4054118 1.019435 0.8479882 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E047-H3K27ME3_subsample-0.1e6.cc.plot.pdf

./E047-H3K27ME3_subsample-0.1e6.cc.plot.pdf

./E047-H3K27ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E047-H3K27ME3_subsample-0.1e6.tagAlign.gz 199995 1255 0.0032692228761549 30 0.003188718 1500 0.002991079 1.092991 1.407329 1 E047-H3K27ME3_subsample-0.1e6.tagAlign.gz 199991 125 0.0033385687678758 35 0.003138714 1500 0.00299881 1.113298 2.428507 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E047-H3K27ME3_subsample-0.25e6.cc.plot.pdf

./E047-H3K27ME3_subsample-0.25e6.cc.plot.pdf

./E047-H3K27ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E047-H3K27ME3_subsample-0.25e6.tagAlign.gz 499986 175 0.00723404467450438 30 0.00723724 1500 0.007079181 1.021876 0.9797863 0 E047-H3K27ME3_subsample-0.25e6.tagAlign.gz 499982 145 0.0072582258751863 35 0.007257303 1500 0.006968985 1.041504 1.003201 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E047-H3K27ME3_subsample-0.5e6.cc.plot.pdf

./E047-H3K27ME3_subsample-0.5e6.cc.plot.pdf

./E047-H3K27ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E047-H3K27ME3_subsample-0.5e6.tagAlign.gz 999963 90 0.014283046245714 35 0.01436979 1500 0.01380989 1.034262 0.8450704 0 E047-H3K27ME3_subsample-0.5e6.tagAlign.gz 999971 105 0.0142604500193481 35 0.01434514 1500 0.0138307 1.031072 0.8353716 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E047-H3K27ME3_subsample-10e6.cc.plot.pdf

./E047-H3K27ME3_subsample-10e6.cc.plot.pdf

./E047-H3K27ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E047-H3K27ME3_subsample-10e6.tagAlign.gz 19999247 155 0.222068552222362 35 0.224265 1500 0.217421 1.021376 0.6790693 0 E047-H3K27ME3_subsample-10e6.tagAlign.gz 19999231 165 0.222134266694765 35 0.2242491 1500 0.2175043 1.021287 0.6864474 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E047-H3K27ME3_subsample-1e6.cc.plot.pdf

./E047-H3K27ME3_subsample-1e6.cc.plot.pdf

./E047-H3K27ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E047-H3K27ME3_subsample-1e6.tagAlign.gz 1999935 155 0.028050569991765 35 0.02830733 1500 0.02742377 1.022856 0.7094023 0 E047-H3K27ME3_subsample-1e6.tagAlign.gz 1999923 155 0.0280860682540884 35 0.02820782 1500 0.02733965 1.027302 0.8597565 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E047-H3K27ME3_subsample-2.5e6.cc.plot.pdf

./E047-H3K27ME3_subsample-2.5e6.cc.plot.pdf

./E047-H3K27ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E047-H3K27ME3_subsample-2.5e6.tagAlign.gz 4999784 150 0.0671074093621908 35 0.06772966 1500 0.06563156 1.022487 0.7034229 0 E047-H3K27ME3_subsample-2.5e6.tagAlign.gz 4999816 175 0.0670742787610356 35 0.06762111 1500 0.06559031 1.022625 0.7307298 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E047-H3K27ME3_subsample-20e6.cc.plot.pdf

./E047-H3K27ME3_subsample-20e6.cc.plot.pdf

./E047-H3K27ME3_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E047-H3K27ME3_subsample-20e6.tagAlign.gz 39998417 165 0.361449361547315 35 0.363643 1500 0.3542729 1.020257 0.7658865 0 E047-H3K27ME3_subsample-20e6.tagAlign.gz 39998451 160 0.361454472446758 35 0.3636425 1500 0.3543037 1.020183 0.7657022 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E047-H3K27ME3_subsample-5e6.cc.plot.pdf

./E047-H3K27ME3_subsample-5e6.cc.plot.pdf

./E047-H3K27ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E047-H3K27ME3_subsample-5e6.tagAlign.gz 9999588 150 0.125417835862022 35 0.1265405 1500 0.1226988 1.02216 0.7077635 0 E047-H3K27ME3_subsample-5e6.tagAlign.gz 9999602 165 0.12542202425087 35 0.1265871 1500 0.1227486 1.021779 0.6964745 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E047-H3K27ME3_subsample-7.5e6.cc.plot.pdf

./E047-H3K27ME3_subsample-7.5e6.cc.plot.pdf

./E047-H3K27ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E047-H3K27ME3_subsample-7.5e6.tagAlign.gz 14999433 160 0.176641725873783 35 0.1784398 1500 0.1729478 1.021359 0.6726033 0 E047-H3K27ME3_subsample-7.5e6.tagAlign.gz 14999408 155 0.176699018283037 35 0.1786552 1500 0.1729385 1.021745 0.6578124 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E047-H3K36ME3_merged.cc.plot.pdf

./E047-H3K36ME3_merged.cc.plot.pdf

./E047-H3K36ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E047-H3K36ME3_merged.tagAlign.gz 63080878 195 0.470314261683829 35 0.4751322 1500 0.4633386 1.015055 0.5914787 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E047-H3K36ME3_subsample-0.1e6.cc.plot.pdf

./E047-H3K36ME3_subsample-0.1e6.cc.plot.pdf

./E047-H3K36ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E047-H3K36ME3_subsample-0.1e6.tagAlign.gz 199975 505 0.0032469050591099 30 0.003145341 1500 0.003113161 1.042961 4.156099 2 E047-H3K36ME3_subsample-0.1e6.tagAlign.gz 199987 1360 0.0032435804626391 35 0.003203819 1500 0.003082788 1.052158 1.328523 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E047-H3K36ME3_subsample-0.25e6.cc.plot.pdf

./E047-H3K36ME3_subsample-0.25e6.cc.plot.pdf

./E047-H3K36ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E047-H3K36ME3_subsample-0.25e6.tagAlign.gz 499969 270 0.00735262397031633 35 0.007328725 1500 0.00714618 1.028889 1.130923 1 E047-H3K36ME3_subsample-0.25e6.tagAlign.gz 499955 380 0.00734181507262271 35 0.007297313 1500 0.007063933 1.039338 1.190686 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E047-H3K36ME3_subsample-0.5e6.cc.plot.pdf

./E047-H3K36ME3_subsample-0.5e6.cc.plot.pdf

./E047-H3K36ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E047-H3K36ME3_subsample-0.5e6.tagAlign.gz 999915 245 0.0144201334162637 35 0.01463097 1500 0.01393337 1.034935 0.6977726 0 E047-H3K36ME3_subsample-0.5e6.tagAlign.gz 999912 75 0.0143889780289704 35 0.0144462 1500 0.01405791 1.023551 0.8526304 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E047-H3K36ME3_subsample-10e6.cc.plot.pdf

./E047-H3K36ME3_subsample-10e6.cc.plot.pdf

./E047-H3K36ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E047-H3K36ME3_subsample-10e6.tagAlign.gz 19998197 205 0.222907094815657 35 0.2263549 1500 0.2192363 1.016744 0.5156644 0 E047-H3K36ME3_subsample-10e6.tagAlign.gz 19998237 195 0.222868365892336 35 0.2264975 1500 0.2193213 1.016173 0.4942798 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E047-H3K36ME3_subsample-1e6.cc.plot.pdf

./E047-H3K36ME3_subsample-1e6.cc.plot.pdf

./E047-H3K36ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E047-H3K36ME3_subsample-1e6.tagAlign.gz 1999804 190 0.0281872541901584 35 0.02863973 1500 0.02772425 1.0167 0.5057493 0 E047-H3K36ME3_subsample-1e6.tagAlign.gz 1999805 220 0.0282489111064502 35 0.0285709 1500 0.02764097 1.021994 0.6537475 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E047-H3K36ME3_subsample-2.5e6.cc.plot.pdf

./E047-H3K36ME3_subsample-2.5e6.cc.plot.pdf

./E047-H3K36ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E047-H3K36ME3_subsample-2.5e6.tagAlign.gz 4999552 150 0.0674422121298977 35 0.06838771 1500 0.06625558 1.01791 0.5565473 0 E047-H3K36ME3_subsample-2.5e6.tagAlign.gz 4999562 195 0.0674427389872805 35 0.06845472 1500 0.066334 1.016715 0.5228139 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E047-H3K36ME3_subsample-20e6.cc.plot.pdf

./E047-H3K36ME3_subsample-20e6.cc.plot.pdf

./E047-H3K36ME3_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E047-H3K36ME3_subsample-20e6.tagAlign.gz 39996447 205 0.362175854300827 35 0.3673736 1500 0.3565057 1.015905 0.5217343 0 E047-H3K36ME3_subsample-20e6.tagAlign.gz 39996371 190 0.362227451251747 35 0.367339 1500 0.3565161 1.01602 0.5277132 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E047-H3K36ME3_subsample-30e6.cc.plot.pdf

./E047-H3K36ME3_subsample-30e6.cc.plot.pdf

./E047-H3K36ME3_subsample-30e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E047-H3K36ME3_subsample-30e6.tagAlign.gz 59994646 190 0.458082903591448 35 0.4629599 1500 0.4512551 1.015131 0.5833345 0 E047-H3K36ME3_subsample-30e6.tagAlign.gz 59994622 195 0.458090092413085 35 0.4629491 1500 0.4512597 1.015136 0.5843229 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E047-H3K36ME3_subsample-5e6.cc.plot.pdf

./E047-H3K36ME3_subsample-5e6.cc.plot.pdf

./E047-H3K36ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E047-H3K36ME3_subsample-5e6.tagAlign.gz 9999107 225 0.126022797990776 35 0.1279654 1500 0.1239034 1.017105 0.5217528 0 E047-H3K36ME3_subsample-5e6.tagAlign.gz 9999044 215 0.125951714465435 35 0.1279723 1500 0.1238496 1.016973 0.5098885 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E047-H3K36ME3_subsample-7.5e6.cc.plot.pdf

./E047-H3K36ME3_subsample-7.5e6.cc.plot.pdf

./E047-H3K36ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E047-H3K36ME3_subsample-7.5e6.tagAlign.gz 14998647 210 0.177376862637946 35 0.1801642 1500 0.1742886 1.017719 0.5256081 0 E047-H3K36ME3_subsample-7.5e6.tagAlign.gz 14998684 175 0.177392616577571 35 0.1802814 1500 0.1744973 1.016592 0.5005645 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E047-H3K4ME1_merged.cc.plot.pdf

./E047-H3K4ME1_merged.cc.plot.pdf

./E047-H3K4ME1_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E047-H3K4ME1_merged.tagAlign.gz 61416249 310 0.495733101039944 35 0.494154 1500 0.4670643 1.061381 1.058292 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E047-H3K4ME1_subsample-0.1e6.cc.plot.pdf

./E047-H3K4ME1_subsample-0.1e6.cc.plot.pdf

./E047-H3K4ME1_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E047-H3K4ME1_subsample-0.1e6.tagAlign.gz 199990 0 0.00357336585946351 40 0.003346917 1500 0.003279406 1.089638 4.354266 2 E047-H3K4ME1_subsample-0.1e6.tagAlign.gz 199992 215 0.00351034840314606 30 0.003426502 1500 0.003348898 1.04821 2.080443 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E047-H3K4ME1_subsample-0.25e6.cc.plot.pdf

./E047-H3K4ME1_subsample-0.25e6.cc.plot.pdf

./E047-H3K4ME1_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E047-H3K4ME1_subsample-0.25e6.tagAlign.gz 499957 415 0.00832758220116094 40 0.008165429 1500 0.007618734 1.09304 1.296606 1 E047-H3K4ME1_subsample-0.25e6.tagAlign.gz 499974 235 0.00836431033172775 30 0.008240241 1500 0.007728694 1.082241 1.242538 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E047-H3K4ME1_subsample-0.5e6.cc.plot.pdf

./E047-H3K4ME1_subsample-0.5e6.cc.plot.pdf

./E047-H3K4ME1_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E047-H3K4ME1_subsample-0.5e6.tagAlign.gz 999941 255 0.0163470729184624 35 0.01639061 1500 0.01533692 1.065864 0.958685 0 E047-H3K4ME1_subsample-0.5e6.tagAlign.gz 999941 315 0.0163742930481961 35 0.01640572 1500 0.01518476 1.078338 0.9742585 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E047-H3K4ME1_subsample-10e6.cc.plot.pdf

./E047-H3K4ME1_subsample-10e6.cc.plot.pdf

./E047-H3K4ME1_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E047-H3K4ME1_subsample-10e6.tagAlign.gz 19998699 315 0.245888432043497 35 0.2461595 1500 0.2315472 1.061937 0.981452 0 E047-H3K4ME1_subsample-10e6.tagAlign.gz 19998721 305 0.245907271576838 35 0.245994 1500 0.231457 1.062432 0.994035 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E047-H3K4ME1_subsample-1e6.cc.plot.pdf

./E047-H3K4ME1_subsample-1e6.cc.plot.pdf

./E047-H3K4ME1_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E047-H3K4ME1_subsample-1e6.tagAlign.gz 1999874 220 0.0320475117001789 35 0.03182526 1500 0.02988689 1.072293 1.114657 1 E047-H3K4ME1_subsample-1e6.tagAlign.gz 1999874 315 0.0320949109627312 35 0.03203223 1500 0.029968 1.070973 1.030367 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E047-H3K4ME1_subsample-2.5e6.cc.plot.pdf

./E047-H3K4ME1_subsample-2.5e6.cc.plot.pdf

./E047-H3K4ME1_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E047-H3K4ME1_subsample-2.5e6.tagAlign.gz 4999680 320 0.0760567349554417 35 0.07601546 1500 0.07167978 1.061063 1.00952 1 E047-H3K4ME1_subsample-2.5e6.tagAlign.gz 4999698 300 0.0760742183119028 35 0.07618058 1500 0.07143301 1.064973 0.9775976 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E047-H3K4ME1_subsample-20e6.cc.plot.pdf

./E047-H3K4ME1_subsample-20e6.cc.plot.pdf

./E047-H3K4ME1_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E047-H3K4ME1_subsample-20e6.tagAlign.gz 39997448 310 0.392387471575383 35 0.3921032 1500 0.3694285 1.062147 1.012538 1 E047-H3K4ME1_subsample-20e6.tagAlign.gz 39997457 305 0.392335864350342 35 0.3920704 1500 0.3694575 1.061924 1.011739 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E047-H3K4ME1_subsample-30e6.cc.plot.pdf

./E047-H3K4ME1_subsample-30e6.cc.plot.pdf

./E047-H3K4ME1_subsample-30e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E047-H3K4ME1_subsample-30e6.tagAlign.gz 59996181 310 0.490004525085278 35 0.4884634 1500 0.4616562 1.061406 1.057488 1 E047-H3K4ME1_subsample-30e6.tagAlign.gz 59996207 310 0.490016581438548 35 0.4884759 1500 0.4616664 1.061408 1.057467 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E047-H3K4ME1_subsample-5e6.cc.plot.pdf

./E047-H3K4ME1_subsample-5e6.cc.plot.pdf

./E047-H3K4ME1_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E047-H3K4ME1_subsample-5e6.tagAlign.gz 9999356 310 0.140948690112379 35 0.1409479 1500 0.1326426 1.06262 1.000096 1 E047-H3K4ME1_subsample-5e6.tagAlign.gz 9999380 305 0.141001833111985 35 0.1409261 1500 0.1326255 1.063158 1.009123 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E047-H3K4ME1_subsample-7.5e6.cc.plot.pdf

./E047-H3K4ME1_subsample-7.5e6.cc.plot.pdf

./E047-H3K4ME1_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E047-H3K4ME1_subsample-7.5e6.tagAlign.gz 14999062 310 0.197125421428223 35 0.1971073 1500 0.1853983 1.063253 1.00155 1 E047-H3K4ME1_subsample-7.5e6.tagAlign.gz 14999010 330 0.197114089865049 35 0.1971095 1500 0.1853604 1.06341 1.000391 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E047-H3K4ME3_merged.cc.plot.pdf

./E047-H3K4ME3_merged.cc.plot.pdf

./E047-H3K4ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E047-H3K4ME3_merged.tagAlign.gz 71939177 210 0.571472996142125 35 0.5465072 1500 0.459443 1.243839 1.286751 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E047-H3K4ME3_subsample-0.1e6.cc.plot.pdf

./E047-H3K4ME3_subsample-0.1e6.cc.plot.pdf

./E047-H3K4ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E047-H3K4ME3_subsample-0.1e6.tagAlign.gz 199927 200 0.00415720538397894 35 0.003792246 1500 0.003159782 1.315662 1.577043 2 E047-H3K4ME3_subsample-0.1e6.tagAlign.gz 199926 210 0.00402944298643188 30 0.003881607 1500 0.003096384 1.301338 1.188272 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E047-H3K4ME3_subsample-0.25e6.cc.plot.pdf

./E047-H3K4ME3_subsample-0.25e6.cc.plot.pdf

./E047-H3K4ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E047-H3K4ME3_subsample-0.25e6.tagAlign.gz 499801 240 0.00981270382304368 40 0.009186782 1500 0.007650264 1.282662 1.407364 1 E047-H3K4ME3_subsample-0.25e6.tagAlign.gz 499807 210 0.00970852430854036 35 0.009090699 1500 0.007692449 1.262085 1.441856 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E047-H3K4ME3_subsample-0.5e6.cc.plot.pdf

./E047-H3K4ME3_subsample-0.5e6.cc.plot.pdf

./E047-H3K4ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E047-H3K4ME3_subsample-0.5e6.tagAlign.gz 999609 210 0.0189874450520643 40 0.018244 1500 0.01501288 1.264744 1.230087 1 E047-H3K4ME3_subsample-0.5e6.tagAlign.gz 999642 225 0.0190599883051239 40 0.01822316 1500 0.0150944 1.26272 1.267463 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E047-H3K4ME3_subsample-10e6.cc.plot.pdf

./E047-H3K4ME3_subsample-10e6.cc.plot.pdf

./E047-H3K4ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E047-H3K4ME3_subsample-10e6.tagAlign.gz 19992723 210 0.27509744890853 35 0.2644824 1500 0.2204562 1.247855 1.241107 1 E047-H3K4ME3_subsample-10e6.tagAlign.gz 19992667 205 0.275053795398266 35 0.2642438 1500 0.2203764 1.248109 1.246423 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E047-H3K4ME3_subsample-1e6.cc.plot.pdf

./E047-H3K4ME3_subsample-1e6.cc.plot.pdf

./E047-H3K4ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E047-H3K4ME3_subsample-1e6.tagAlign.gz 1999249 245 0.0371047670648353 40 0.03557248 1500 0.02969962 1.249335 1.260909 1 E047-H3K4ME3_subsample-1e6.tagAlign.gz 1999301 225 0.0370817987762889 35 0.03543833 1500 0.02959846 1.252829 1.281423 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E047-H3K4ME3_subsample-2.5e6.cc.plot.pdf

./E047-H3K4ME3_subsample-2.5e6.cc.plot.pdf

./E047-H3K4ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E047-H3K4ME3_subsample-2.5e6.tagAlign.gz 4998221 210 0.0875682569150814 35 0.08396158 1500 0.07001102 1.250778 1.258533 1 E047-H3K4ME3_subsample-2.5e6.tagAlign.gz 4998149 215 0.0874870440118365 35 0.08391236 1500 0.07010512 1.247941 1.2589 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E047-H3K4ME3_subsample-20e6.cc.plot.pdf

./E047-H3K4ME3_subsample-20e6.cc.plot.pdf

./E047-H3K4ME3_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E047-H3K4ME3_subsample-20e6.tagAlign.gz 39985546 205 0.428615532115454 35 0.4112376 1500 0.3440624 1.245749 1.258695 1 E047-H3K4ME3_subsample-20e6.tagAlign.gz 39985277 210 0.42860615602201 35 0.4111859 1500 0.344049 1.245771 1.259473 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E047-H3K4ME3_subsample-30e6.cc.plot.pdf

./E047-H3K4ME3_subsample-30e6.cc.plot.pdf

./E047-H3K4ME3_subsample-30e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E047-H3K4ME3_subsample-30e6.tagAlign.gz 59978160 210 0.527521041734992 35 0.5048232 1500 0.4238102 1.24471 1.280176 1 E047-H3K4ME3_subsample-30e6.tagAlign.gz 59978114 210 0.527469313735829 35 0.5047895 1500 0.4238137 1.244578 1.280082 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E047-H3K4ME3_subsample-5e6.cc.plot.pdf

./E047-H3K4ME3_subsample-5e6.cc.plot.pdf

./E047-H3K4ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E047-H3K4ME3_subsample-5e6.tagAlign.gz 9996337 215 0.160319255086336 35 0.1541372 1500 0.1284178 1.248419 1.240366 1 E047-H3K4ME3_subsample-5e6.tagAlign.gz 9996371 215 0.160323695422725 35 0.1541974 1500 0.1285233 1.247429 1.238617 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E047-H3K4ME3_subsample-7.5e6.cc.plot.pdf

./E047-H3K4ME3_subsample-7.5e6.cc.plot.pdf

./E047-H3K4ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E047-H3K4ME3_subsample-7.5e6.tagAlign.gz 14994591 220 0.222075265924856 35 0.213553 1500 0.1778331 1.248785 1.238587 1 E047-H3K4ME3_subsample-7.5e6.tagAlign.gz 14994603 215 0.221990237223975 35 0.213526 1500 0.1779079 1.247782 1.23764 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E047-H3K9ME3_merged.cc.plot.pdf

./E047-H3K9ME3_merged.cc.plot.pdf

./E047-H3K9ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E047-H3K9ME3_merged.tagAlign.gz 58513431 310 0.448129311248269 35 0.4575674 1500 0.4411296 1.015868 0.4258297 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E047-H3K9ME3_subsample-0.1e6.cc.plot.pdf

./E047-H3K9ME3_subsample-0.1e6.cc.plot.pdf

./E047-H3K9ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E047-H3K9ME3_subsample-0.1e6.tagAlign.gz 199973 60 0.00327212986655578 35 0.003129581 1500 0.003043577 1.075094 2.657463 2 E047-H3K9ME3_subsample-0.1e6.tagAlign.gz 199982 -170 0.00332578204602574 35 0.003178576 1500 0.002999687 1.10871 1.822887 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E047-H3K9ME3_subsample-0.25e6.cc.plot.pdf

./E047-H3K9ME3_subsample-0.25e6.cc.plot.pdf

./E047-H3K9ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E047-H3K9ME3_subsample-0.25e6.tagAlign.gz 499940 90 0.00730665373560469 35 0.007512775 1500 0.007053893 1.035833 0.5508189 0 E047-H3K9ME3_subsample-0.25e6.tagAlign.gz 499936 50 0.00733907933274324 35 0.007561336 1500 0.007054246 1.040378 0.5617015 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E047-H3K9ME3_subsample-0.5e6.cc.plot.pdf

./E047-H3K9ME3_subsample-0.5e6.cc.plot.pdf

./E047-H3K9ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E047-H3K9ME3_subsample-0.5e6.tagAlign.gz 999875 65 0.0143452237073721 35 0.01468538 1500 0.01398314 1.025894 0.5156097 0 E047-H3K9ME3_subsample-0.5e6.tagAlign.gz 999893 310 0.0143604982867913 35 0.0148144 1500 0.01405933 1.021422 0.3988672 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E047-H3K9ME3_subsample-10e6.cc.plot.pdf

./E047-H3K9ME3_subsample-10e6.cc.plot.pdf

./E047-H3K9ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E047-H3K9ME3_subsample-10e6.tagAlign.gz 19997609 315 0.221379741043677 35 0.2297824 1500 0.217224 1.019131 0.3309148 -1 E047-H3K9ME3_subsample-10e6.tagAlign.gz 19997559 310 0.221297629252704 35 0.2298121 1500 0.2173343 1.018236 0.3176289 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E047-H3K9ME3_subsample-1e6.cc.plot.pdf

./E047-H3K9ME3_subsample-1e6.cc.plot.pdf

./E047-H3K9ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E047-H3K9ME3_subsample-1e6.tagAlign.gz 1999747 65 0.0281927334271867 35 0.02910496 1500 0.02755546 1.023127 0.4112769 -1 E047-H3K9ME3_subsample-1e6.tagAlign.gz 1999754 245 0.0281029766008365 35 0.02918221 1500 0.02751774 1.021268 0.3516069 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E047-H3K9ME3_subsample-2.5e6.cc.plot.pdf

./E047-H3K9ME3_subsample-2.5e6.cc.plot.pdf

./E047-H3K9ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E047-H3K9ME3_subsample-2.5e6.tagAlign.gz 4999418 315 0.0671696646600104 35 0.06976217 1500 0.06581132 1.02064 0.3438117 -1 E047-H3K9ME3_subsample-2.5e6.tagAlign.gz 4999391 325 0.0670985119411137 35 0.06967289 1500 0.06578991 1.019891 0.3370093 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E047-H3K9ME3_subsample-20e6.cc.plot.pdf

./E047-H3K9ME3_subsample-20e6.cc.plot.pdf

./E047-H3K9ME3_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E047-H3K9ME3_subsample-20e6.tagAlign.gz 39995203 310 0.359021787520676 35 0.3702454 1500 0.3529036 1.017337 0.3527997 -1 E047-H3K9ME3_subsample-20e6.tagAlign.gz 39995194 310 0.359074414744653 35 0.3701887 1500 0.3529324 1.017403 0.3559294 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E047-H3K9ME3_subsample-5e6.cc.plot.pdf

./E047-H3K9ME3_subsample-5e6.cc.plot.pdf

./E047-H3K9ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E047-H3K9ME3_subsample-5e6.tagAlign.gz 9998791 305 0.125344695079297 35 0.1301611 1500 0.123003 1.019038 0.3271415 -1 E047-H3K9ME3_subsample-5e6.tagAlign.gz 9998857 315 0.125403891604198 35 0.130265 1500 0.1230102 1.019459 0.3299471 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E047-H3K9ME3_subsample-7.5e6.cc.plot.pdf

./E047-H3K9ME3_subsample-7.5e6.cc.plot.pdf

./E047-H3K9ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E047-H3K9ME3_subsample-7.5e6.tagAlign.gz 14998193 315 0.176320042417109 35 0.1831883 1500 0.1730728 1.018762 0.3210142 -1 E047-H3K9ME3_subsample-7.5e6.tagAlign.gz 14998184 320 0.176311315277328 35 0.1831358 1500 0.1730517 1.018836 0.3232414 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E048-H3K27AC_merged.cc.plot.pdf

./E048-H3K27AC_merged.cc.plot.pdf

./E048-H3K27AC_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E048-H3K27AC_merged.tagAlign.gz 13922362 250 0.216858239536207 35 0.2038765 1500 0.1745108 1.242664 1.44207 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E048-H3K27AC_subsample-0.1e6.cc.plot.pdf

./E048-H3K27AC_subsample-0.1e6.cc.plot.pdf

./E048-H3K27AC_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E048-H3K27AC_subsample-0.1e6.tagAlign.gz 199982 230 0.00414481278428958 35 0.003875952 1500 0.003319087 1.248781 1.482812 1 E048-H3K27AC_subsample-0.1e6.tagAlign.gz 199983 215 0.00421158861777781 35 0.003904096 1500 0.003283282 1.282738 1.495304 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E048-H3K27AC_subsample-0.25e6.cc.plot.pdf

./E048-H3K27AC_subsample-0.25e6.cc.plot.pdf

./E048-H3K27AC_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E048-H3K27AC_subsample-0.25e6.tagAlign.gz 499959 270 0.0100569391465509 40 0.009248661 1500 0.008010032 1.255543 1.652559 2 E048-H3K27AC_subsample-0.25e6.tagAlign.gz 499962 295 0.0101096471682397 40 0.009345334 1500 0.00798754 1.265677 1.562907 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E048-H3K27AC_subsample-0.5e6.cc.plot.pdf

./E048-H3K27AC_subsample-0.5e6.cc.plot.pdf

./E048-H3K27AC_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E048-H3K27AC_subsample-0.5e6.tagAlign.gz 999920 210 0.0197029797493757 30 0.01845599 1500 0.01575042 1.250949 1.460898 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E048-H3K27AC_subsample-1e6.cc.plot.pdf

./E048-H3K27AC_subsample-1e6.cc.plot.pdf

./E048-H3K27AC_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E048-H3K27AC_subsample-1e6.tagAlign.gz 1999833 250 0.0384558959636292 35 0.03594157 1500 0.03082514 1.24755 1.491423 1 E048-H3K27AC_subsample-1e6.tagAlign.gz 1999826 250 0.0385878060943533 35 0.03605455 1500 0.03079532 1.253041 1.481677 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E048-H3K27AC_subsample-2.5e6.cc.plot.pdf

./E048-H3K27AC_subsample-2.5e6.cc.plot.pdf

./E048-H3K27AC_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E048-H3K27AC_subsample-2.5e6.tagAlign.gz 4999589 235 0.0906430075490798 35 0.08532692 1500 0.07291101 1.243201 1.428168 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E048-H3K27AC_subsample-5e6.cc.plot.pdf

./E048-H3K27AC_subsample-5e6.cc.plot.pdf

./E048-H3K27AC_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E048-H3K27AC_subsample-5e6.tagAlign.gz 9999185 245 0.165995149709755 35 0.1559464 1500 0.1335495 1.242949 1.448665 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E048-H3K27ME3_merged.cc.plot.pdf

./E048-H3K27ME3_merged.cc.plot.pdf

./E048-H3K27ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E048-H3K27ME3_merged.tagAlign.gz 41413085 215 0.366013362448926 35 0.37164 1500 0.359834 1.017173 0.523405 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E048-H3K27ME3_subsample-0.1e6.cc.plot.pdf

./E048-H3K27ME3_subsample-0.1e6.cc.plot.pdf

./E048-H3K27ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E048-H3K27ME3_subsample-0.1e6.tagAlign.gz 199988 1035 0.00325894946479882 35 0.003127391 1500 0.003073428 1.060363 3.437945 2 E048-H3K27ME3_subsample-0.1e6.tagAlign.gz 199987 665 0.003268278266484 35 0.00318814 1500 0.003065676 1.066087 1.654378 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E048-H3K27ME3_subsample-0.25e6.cc.plot.pdf

./E048-H3K27ME3_subsample-0.25e6.cc.plot.pdf

./E048-H3K27ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E048-H3K27ME3_subsample-0.25e6.tagAlign.gz 499971 -95 0.00720288923701661 30 0.007125451 1500 0.007007262 1.027918 1.655206 2 E048-H3K27ME3_subsample-0.25e6.tagAlign.gz 499971 225 0.0071582886737012 35 0.007155373 1500 0.006897977 1.037737 1.011326 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E048-H3K27ME3_subsample-0.5e6.cc.plot.pdf

./E048-H3K27ME3_subsample-0.5e6.cc.plot.pdf

./E048-H3K27ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E048-H3K27ME3_subsample-0.5e6.tagAlign.gz 999940 245 0.0140495660200258 35 0.01427651 1500 0.01369673 1.025761 0.6085705 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E048-H3K27ME3_subsample-10e6.cc.plot.pdf

./E048-H3K27ME3_subsample-10e6.cc.plot.pdf

./E048-H3K27ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E048-H3K27ME3_subsample-10e6.tagAlign.gz 19998887 220 0.219556951800028 35 0.2229438 1500 0.215871 1.017075 0.5211403 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E048-H3K27ME3_subsample-1e6.cc.plot.pdf

./E048-H3K27ME3_subsample-1e6.cc.plot.pdf

./E048-H3K27ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E048-H3K27ME3_subsample-1e6.tagAlign.gz 1999904 235 0.0276073671891791 35 0.02800001 1500 0.02711261 1.018248 0.5575316 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E048-H3K27ME3_subsample-2.5e6.cc.plot.pdf

./E048-H3K27ME3_subsample-2.5e6.cc.plot.pdf

./E048-H3K27ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E048-H3K27ME3_subsample-2.5e6.tagAlign.gz 4999719 225 0.0661956369418222 35 0.06713711 1500 0.06496095 1.019007 0.5673688 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E048-H3K27ME3_subsample-20e6.cc.plot.pdf

./E048-H3K27ME3_subsample-20e6.cc.plot.pdf

./E048-H3K27ME3_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E048-H3K27ME3_subsample-20e6.tagAlign.gz 39997799 215 0.358112361540963 35 0.3636153 1500 0.3520818 1.017128 0.5228758 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E048-H3K27ME3_subsample-5e6.cc.plot.pdf

./E048-H3K27ME3_subsample-5e6.cc.plot.pdf

./E048-H3K27ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E048-H3K27ME3_subsample-5e6.tagAlign.gz 9999454 235 0.123804230489658 35 0.125619 1500 0.1217096 1.01721 0.5357863 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E048-H3K27ME3_subsample-7.5e6.cc.plot.pdf

./E048-H3K27ME3_subsample-7.5e6.cc.plot.pdf

./E048-H3K27ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E048-H3K27ME3_subsample-7.5e6.tagAlign.gz 14999171 225 0.174609927545993 35 0.1771857 1500 0.1715576 1.017792 0.5423299 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E048-H3K36ME3_merged.cc.plot.pdf

./E048-H3K36ME3_merged.cc.plot.pdf

./E048-H3K36ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E048-H3K36ME3_merged.tagAlign.gz 47372333 235 0.401221145205599 35 0.4087223 1500 0.3945223 1.01698 0.4717495 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E048-H3K36ME3_subsample-0.1e6.cc.plot.pdf

./E048-H3K36ME3_subsample-0.1e6.cc.plot.pdf

./E048-H3K36ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E048-H3K36ME3_subsample-0.1e6.tagAlign.gz 199985 -300 0.00322413872646328 30 0.003199295 1500 0.00306322 1.052532 1.182572 1 E048-H3K36ME3_subsample-0.1e6.tagAlign.gz 199989 1200 0.00322112227237357 40 0.003239985 1500 0.003131983 1.028461 0.8253498 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E048-H3K36ME3_subsample-0.25e6.cc.plot.pdf

./E048-H3K36ME3_subsample-0.25e6.cc.plot.pdf

./E048-H3K36ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E048-H3K36ME3_subsample-0.25e6.tagAlign.gz 499970 185 0.00725605534576395 35 0.00726411 1500 0.007068085 1.026594 0.9589121 0 E048-H3K36ME3_subsample-0.25e6.tagAlign.gz 499970 250 0.00726585561161948 35 0.007397874 1500 0.007050648 1.030523 0.6197905 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E048-H3K36ME3_subsample-0.5e6.cc.plot.pdf

./E048-H3K36ME3_subsample-0.5e6.cc.plot.pdf

./E048-H3K36ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E048-H3K36ME3_subsample-0.5e6.tagAlign.gz 999954 225 0.0142670381557876 35 0.01441103 1500 0.01390838 1.025787 0.7135414 0 E048-H3K36ME3_subsample-0.5e6.tagAlign.gz 999944 195 0.014321822988374 35 0.01447551 1500 0.01401244 1.022079 0.6681089 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E048-H3K36ME3_subsample-10e6.cc.plot.pdf

./E048-H3K36ME3_subsample-10e6.cc.plot.pdf

./E048-H3K36ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E048-H3K36ME3_subsample-10e6.tagAlign.gz 19998886 230 0.222234670201117 35 0.2263992 1500 0.2185272 1.016966 0.4709687 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E048-H3K36ME3_subsample-1e6.cc.plot.pdf

./E048-H3K36ME3_subsample-1e6.cc.plot.pdf

./E048-H3K36ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E048-H3K36ME3_subsample-1e6.tagAlign.gz 1999879 230 0.0281244064995497 35 0.02853934 1500 0.02757293 1.020001 0.570647 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E048-H3K36ME3_subsample-2.5e6.cc.plot.pdf

./E048-H3K36ME3_subsample-2.5e6.cc.plot.pdf

./E048-H3K36ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E048-H3K36ME3_subsample-2.5e6.tagAlign.gz 4999718 220 0.0671302868824916 35 0.06825901 1500 0.06597156 1.017564 0.5065574 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E048-H3K36ME3_subsample-20e6.cc.plot.pdf

./E048-H3K36ME3_subsample-20e6.cc.plot.pdf

./E048-H3K36ME3_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E048-H3K36ME3_subsample-20e6.tagAlign.gz 39997734 235 0.361932738970969 35 0.3686755 1500 0.355868 1.017042 0.4735324 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E048-H3K36ME3_subsample-5e6.cc.plot.pdf

./E048-H3K36ME3_subsample-5e6.cc.plot.pdf

./E048-H3K36ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E048-H3K36ME3_subsample-5e6.tagAlign.gz 9999429 205 0.125569984274856 35 0.1278093 1500 0.1232731 1.018633 0.506343 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E048-H3K36ME3_subsample-7.5e6.cc.plot.pdf

./E048-H3K36ME3_subsample-7.5e6.cc.plot.pdf

./E048-H3K36ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E048-H3K36ME3_subsample-7.5e6.tagAlign.gz 14999129 230 0.176827432256617 35 0.180068 1500 0.173815 1.017331 0.4817545 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E048-H3K4ME1_merged.cc.plot.pdf

./E048-H3K4ME1_merged.cc.plot.pdf

./E048-H3K4ME1_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E048-H3K4ME1_merged.tagAlign.gz 42856582 220 0.397263758282409 35 0.4000848 1500 0.3788377 1.048638 0.8672285 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E048-H3K4ME1_subsample-0.1e6.cc.plot.pdf

./E048-H3K4ME1_subsample-0.1e6.cc.plot.pdf

./E048-H3K4ME1_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E048-H3K4ME1_subsample-0.1e6.tagAlign.gz 199983 195 0.0033671059777663 40 0.003314574 1500 0.003187254 1.056428 1.412597 1 E048-H3K4ME1_subsample-0.1e6.tagAlign.gz 199988 235 0.00336866635830571 40 0.003313209 1500 0.003077399 1.094647 1.235176 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E048-H3K4ME1_subsample-0.25e6.cc.plot.pdf

./E048-H3K4ME1_subsample-0.25e6.cc.plot.pdf

./E048-H3K4ME1_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E048-H3K4ME1_subsample-0.25e6.tagAlign.gz 499978 225 0.00798315975670915 30 0.007816209 1500 0.007383877 1.081161 1.386163 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E048-H3K4ME1_subsample-0.5e6.cc.plot.pdf

./E048-H3K4ME1_subsample-0.5e6.cc.plot.pdf

./E048-H3K4ME1_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E048-H3K4ME1_subsample-0.5e6.tagAlign.gz 999966 215 0.0156220771642067 35 0.01562245 1500 0.01464571 1.066666 0.9996215 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E048-H3K4ME1_subsample-10e6.cc.plot.pdf

./E048-H3K4ME1_subsample-10e6.cc.plot.pdf

./E048-H3K4ME1_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E048-H3K4ME1_subsample-10e6.tagAlign.gz 19999114 235 0.236979303777042 35 0.2386336 1500 0.2259603 1.048765 0.8694659 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E048-H3K4ME1_subsample-1e6.cc.plot.pdf

./E048-H3K4ME1_subsample-1e6.cc.plot.pdf

./E048-H3K4ME1_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E048-H3K4ME1_subsample-1e6.tagAlign.gz 1999910 210 0.0304976287438749 35 0.03063965 1500 0.02896675 1.05285 0.9151049 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E048-H3K4ME1_subsample-2.5e6.cc.plot.pdf

./E048-H3K4ME1_subsample-2.5e6.cc.plot.pdf

./E048-H3K4ME1_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E048-H3K4ME1_subsample-2.5e6.tagAlign.gz 4999793 250 0.0726277988865285 35 0.0729348 1500 0.06912324 1.0507 0.9194558 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E048-H3K4ME1_subsample-20e6.cc.plot.pdf

./E048-H3K4ME1_subsample-20e6.cc.plot.pdf

./E048-H3K4ME1_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E048-H3K4ME1_subsample-20e6.tagAlign.gz 39998216 220 0.381149242435554 35 0.3838538 1500 0.3634584 1.048674 0.8673924 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E048-H3K4ME1_subsample-5e6.cc.plot.pdf

./E048-H3K4ME1_subsample-5e6.cc.plot.pdf

./E048-H3K4ME1_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E048-H3K4ME1_subsample-5e6.tagAlign.gz 9999547 230 0.134918428020316 35 0.1359117 1500 0.1287285 1.048085 0.8617265 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E048-H3K4ME1_subsample-7.5e6.cc.plot.pdf

./E048-H3K4ME1_subsample-7.5e6.cc.plot.pdf

./E048-H3K4ME1_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E048-H3K4ME1_subsample-7.5e6.tagAlign.gz 14999277 220 0.189273877919154 35 0.1906022 1500 0.1805591 1.048266 0.8677354 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E048-H3K4ME3_merged.cc.plot.pdf

./E048-H3K4ME3_merged.cc.plot.pdf

./E048-H3K4ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E048-H3K4ME3_merged.tagAlign.gz 61040029 225 0.47549118645973 35 0.4779097 1500 0.449865 1.056964 0.9137614 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E048-H3K4ME3_subsample-0.1e6.cc.plot.pdf

./E048-H3K4ME3_subsample-0.1e6.cc.plot.pdf

./E048-H3K4ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E048-H3K4ME3_subsample-0.1e6.tagAlign.gz 199988 195 0.00332051684014148 40 0.003147007 1500 0.003115357 1.065854 6.482161 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E048-H3K4ME3_subsample-0.25e6.cc.plot.pdf

./E048-H3K4ME3_subsample-0.25e6.cc.plot.pdf

./E048-H3K4ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E048-H3K4ME3_subsample-0.25e6.tagAlign.gz 499976 285 0.00760252157669667 35 0.007554879 1500 0.007082606 1.073407 1.10088 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E048-H3K4ME3_subsample-0.5e6.cc.plot.pdf

./E048-H3K4ME3_subsample-0.5e6.cc.plot.pdf

./E048-H3K4ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E048-H3K4ME3_subsample-0.5e6.tagAlign.gz 999951 235 0.0150517347985907 35 0.01504952 1500 0.014071 1.069699 1.002266 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E048-H3K4ME3_subsample-10e6.cc.plot.pdf

./E048-H3K4ME3_subsample-10e6.cc.plot.pdf

./E048-H3K4ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E048-H3K4ME3_subsample-10e6.tagAlign.gz 19999004 225 0.231373426458407 35 0.2325503 1500 0.2188313 1.057314 0.9142165 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E048-H3K4ME3_subsample-1e6.cc.plot.pdf

./E048-H3K4ME3_subsample-1e6.cc.plot.pdf

./E048-H3K4ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E048-H3K4ME3_subsample-1e6.tagAlign.gz 1999916 245 0.0294611936939435 35 0.02953543 1500 0.02773364 1.062291 0.9587989 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E048-H3K4ME3_subsample-2.5e6.cc.plot.pdf

./E048-H3K4ME3_subsample-2.5e6.cc.plot.pdf

./E048-H3K4ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E048-H3K4ME3_subsample-2.5e6.tagAlign.gz 4999766 225 0.0704606138656692 35 0.07078725 1500 0.06655716 1.058648 0.9227836 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E048-H3K4ME3_subsample-20e6.cc.plot.pdf

./E048-H3K4ME3_subsample-20e6.cc.plot.pdf

./E048-H3K4ME3_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E048-H3K4ME3_subsample-20e6.tagAlign.gz 39998023 225 0.374220412694997 35 0.3761421 1500 0.3540352 1.057015 0.9130726 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E048-H3K4ME3_subsample-5e6.cc.plot.pdf

./E048-H3K4ME3_subsample-5e6.cc.plot.pdf

./E048-H3K4ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E048-H3K4ME3_subsample-5e6.tagAlign.gz 9999491 235 0.13132946470738 35 0.1318759 1500 0.1242118 1.057302 0.9287035 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E048-H3K4ME3_subsample-7.5e6.cc.plot.pdf

./E048-H3K4ME3_subsample-7.5e6.cc.plot.pdf

./E048-H3K4ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E048-H3K4ME3_subsample-7.5e6.tagAlign.gz 14999211 215 0.184441350039487 35 0.1854166 1500 0.1744574 1.057228 0.9110093 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E048-H3K9ME3_merged.cc.plot.pdf

./E048-H3K9ME3_merged.cc.plot.pdf

./E048-H3K9ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E048-H3K9ME3_merged.tagAlign.gz 48062130 225 0.399903163580892 35 0.4148782 1500 0.3931938 1.017064 0.3094107 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E048-H3K9ME3_subsample-0.1e6.cc.plot.pdf

./E048-H3K9ME3_subsample-0.1e6.cc.plot.pdf

./E048-H3K9ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E048-H3K9ME3_subsample-0.1e6.tagAlign.gz 199990 875 0.00329333080323016 30 0.003120123 1500 0.003186685 1.033466 -1.602217 NA
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E048-H3K9ME3_subsample-0.25e6.cc.plot.pdf

./E048-H3K9ME3_subsample-0.25e6.cc.plot.pdf

./E048-H3K9ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E048-H3K9ME3_subsample-0.25e6.tagAlign.gz 499983 250 0.00726684905904289 35 0.007357188 1500 0.006979917 1.041108 0.7605456 0 E048-H3K9ME3_subsample-0.25e6.tagAlign.gz 499970 215 0.0072691564575541 35 0.007437387 1500 0.006949194 1.046043 0.6554012 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E048-H3K9ME3_subsample-0.5e6.cc.plot.pdf

./E048-H3K9ME3_subsample-0.5e6.cc.plot.pdf

./E048-H3K9ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E048-H3K9ME3_subsample-0.5e6.tagAlign.gz 999951 240 0.0141943191695841 35 0.01465614 1500 0.01386146 1.024013 0.4188591 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E048-H3K9ME3_subsample-10e6.cc.plot.pdf

./E048-H3K9ME3_subsample-10e6.cc.plot.pdf

./E048-H3K9ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E048-H3K9ME3_subsample-10e6.tagAlign.gz 19998968 245 0.219986435882744 35 0.228347 1500 0.2162667 1.0172 0.307916 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E048-H3K9ME3_subsample-1e6.cc.plot.pdf

./E048-H3K9ME3_subsample-1e6.cc.plot.pdf

./E048-H3K9ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E048-H3K9ME3_subsample-1e6.tagAlign.gz 1999904 240 0.0278414309656425 35 0.02881312 1500 0.0273356 1.018505 0.3423526 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E048-H3K9ME3_subsample-2.5e6.cc.plot.pdf

./E048-H3K9ME3_subsample-2.5e6.cc.plot.pdf

./E048-H3K9ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E048-H3K9ME3_subsample-2.5e6.tagAlign.gz 4999750 235 0.0665299846979474 35 0.06917 1500 0.06530914 1.018693 0.3162117 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E048-H3K9ME3_subsample-20e6.cc.plot.pdf

./E048-H3K9ME3_subsample-20e6.cc.plot.pdf

./E048-H3K9ME3_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E048-H3K9ME3_subsample-20e6.tagAlign.gz 39997945 220 0.357800755164464 35 0.3712757 1500 0.351809 1.017031 0.3077958 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E048-H3K9ME3_subsample-5e6.cc.plot.pdf

./E048-H3K9ME3_subsample-5e6.cc.plot.pdf

./E048-H3K9ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E048-H3K9ME3_subsample-5e6.tagAlign.gz 9999487 220 0.124314807331736 35 0.1290816 1500 0.1221676 1.017576 0.3105616 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E048-H3K9ME3_subsample-7.5e6.cc.plot.pdf

./E048-H3K9ME3_subsample-7.5e6.cc.plot.pdf

./E048-H3K9ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E048-H3K9ME3_subsample-7.5e6.tagAlign.gz 14999242 225 0.175048411189944 35 0.1818622 1500 0.1720572 1.017385 0.3050709 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E049-H3K27AC_merged.cc.plot.pdf

./E049-H3K27AC_merged.cc.plot.pdf

./E049-H3K27AC_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E049-H3K27AC_merged.tagAlign.gz 79490124 265 0.707500652569405 40 0.6026061 1500 0.4577307 1.54567 1.724033 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E049-H3K27AC_subsample-0.1e6.cc.plot.pdf

./E049-H3K27AC_subsample-0.1e6.cc.plot.pdf

./E049-H3K27AC_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E049-H3K27AC_subsample-0.1e6.tagAlign.gz 199966 280 0.00697087905319634 35 0.005609288 1500 0.00429542 1.622863 2.036322 2 E049-H3K27AC_subsample-0.1e6.tagAlign.gz 199972 295 0.00685096630611387 40 0.005608795 1500 0.004028973 1.700425 1.786272 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E049-H3K27AC_subsample-0.25e6.cc.plot.pdf

./E049-H3K27AC_subsample-0.25e6.cc.plot.pdf

./E049-H3K27AC_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E049-H3K27AC_subsample-0.25e6.tagAlign.gz 499914 235 0.01635422028655 35 0.01369333 1500 0.01028907 1.589474 1.781637 2 E049-H3K27AC_subsample-0.25e6.tagAlign.gz 499909 275 0.0164109138231793 35 0.01392432 1500 0.010469 1.567573 1.719642 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E049-H3K27AC_subsample-0.5e6.cc.plot.pdf

./E049-H3K27AC_subsample-0.5e6.cc.plot.pdf

./E049-H3K27AC_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E049-H3K27AC_subsample-0.5e6.tagAlign.gz 999812 250 0.0318857436904213 40 0.02693892 1500 0.02029411 1.571182 1.744466 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E049-H3K27AC_subsample-10e6.cc.plot.pdf

./E049-H3K27AC_subsample-10e6.cc.plot.pdf

./E049-H3K27AC_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E049-H3K27AC_subsample-10e6.tagAlign.gz 19996518 275 0.392573662953886 40 0.330952 1500 0.2506175 1.566426 1.767064 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E049-H3K27AC_subsample-1e6.cc.plot.pdf

./E049-H3K27AC_subsample-1e6.cc.plot.pdf

./E049-H3K27AC_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E049-H3K27AC_subsample-1e6.tagAlign.gz 1999666 275 0.0615771973306754 40 0.05178691 1500 0.03921814 1.57012 1.778938 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E049-H3K27AC_subsample-2.5e6.cc.plot.pdf

./E049-H3K27AC_subsample-2.5e6.cc.plot.pdf

./E049-H3K27AC_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E049-H3K27AC_subsample-2.5e6.tagAlign.gz 4999171 255 0.140194481901247 40 0.1183434 1500 0.08965053 1.563789 1.761551 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E049-H3K27AC_subsample-20e6.cc.plot.pdf

./E049-H3K27AC_subsample-20e6.cc.plot.pdf

./E049-H3K27AC_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E049-H3K27AC_subsample-20e6.tagAlign.gz 39993118 265 0.560731069367717 40 0.4731388 1500 0.3583106 1.56493 1.762812 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E049-H3K27AC_subsample-30e6.cc.plot.pdf

./E049-H3K27AC_subsample-30e6.cc.plot.pdf

./E049-H3K27AC_subsample-30e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E049-H3K27AC_subsample-30e6.tagAlign.gz 59989742 265 0.653527609212217 40 0.5527212 1500 0.4188456 1.560307 1.752986 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E049-H3K27AC_subsample-5e6.cc.plot.pdf

./E049-H3K27AC_subsample-5e6.cc.plot.pdf

./E049-H3K27AC_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E049-H3K27AC_subsample-5e6.tagAlign.gz 9998318 275 0.24524011270125 40 0.2068142 1500 0.1567562 1.564468 1.767629 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E049-H3K27AC_subsample-7.5e6.cc.plot.pdf

./E049-H3K27AC_subsample-7.5e6.cc.plot.pdf

./E049-H3K27AC_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E049-H3K27AC_subsample-7.5e6.tagAlign.gz 14997505 260 0.327024125000054 40 0.2753595 1500 0.2087967 1.566232 1.776178 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E049-H3K27ME3_merged.cc.plot.pdf

./E049-H3K27ME3_merged.cc.plot.pdf

./E049-H3K27ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E049-H3K27ME3_merged.tagAlign.gz 118665980 190 0.637298320815602 35 0.6375544 1500 0.6234291 1.022247 0.9818703 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E049-H3K27ME3_subsample-0.1e6.cc.plot.pdf

./E049-H3K27ME3_subsample-0.1e6.cc.plot.pdf

./E049-H3K27ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E049-H3K27ME3_subsample-0.1e6.tagAlign.gz 199982 -265 0.0032522565346703 35 0.003217104 1500 0.003003221 1.082923 1.164354 1 E049-H3K27ME3_subsample-0.1e6.tagAlign.gz 199982 410 0.00329213091251489 40 0.00316591 1500 0.003204175 1.02745 -2.298562 NA
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E049-H3K27ME3_subsample-0.25e6.cc.plot.pdf

./E049-H3K27ME3_subsample-0.25e6.cc.plot.pdf

./E049-H3K27ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E049-H3K27ME3_subsample-0.25e6.tagAlign.gz 499952 -195 0.00757598165113828 30 0.007584072 1500 0.007266429 1.0426 0.974531 0 E049-H3K27ME3_subsample-0.25e6.tagAlign.gz 499957 155 0.00769736863723049 30 0.007522724 1500 0.007331958 1.049838 1.915492 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E049-H3K27ME3_subsample-0.5e6.cc.plot.pdf

./E049-H3K27ME3_subsample-0.5e6.cc.plot.pdf

./E049-H3K27ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E049-H3K27ME3_subsample-0.5e6.tagAlign.gz 999903 135 0.0149262771032066 35 0.01492623 1500 0.0144634 1.032003 1.000093 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E049-H3K27ME3_subsample-10e6.cc.plot.pdf

./E049-H3K27ME3_subsample-10e6.cc.plot.pdf

./E049-H3K27ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E049-H3K27ME3_subsample-10e6.tagAlign.gz 19997833 195 0.230409045073483 35 0.231301 1500 0.2253595 1.022406 0.8498825 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E049-H3K27ME3_subsample-1e6.cc.plot.pdf

./E049-H3K27ME3_subsample-1e6.cc.plot.pdf

./E049-H3K27ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E049-H3K27ME3_subsample-1e6.tagAlign.gz 1999755 190 0.0292265925448545 35 0.02934997 1500 0.02854274 1.023959 0.8471616 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E049-H3K27ME3_subsample-2.5e6.cc.plot.pdf

./E049-H3K27ME3_subsample-2.5e6.cc.plot.pdf

./E049-H3K27ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E049-H3K27ME3_subsample-2.5e6.tagAlign.gz 4999469 205 0.069851128343687 35 0.07018116 1500 0.06832667 1.022311 0.8220378 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E049-H3K27ME3_subsample-20e6.cc.plot.pdf

./E049-H3K27ME3_subsample-20e6.cc.plot.pdf

./E049-H3K27ME3_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E049-H3K27ME3_subsample-20e6.tagAlign.gz 39995697 190 0.373750787597538 35 0.3752506 1500 0.3653274 1.023057 0.8488535 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E049-H3K27ME3_subsample-30e6.cc.plot.pdf

./E049-H3K27ME3_subsample-30e6.cc.plot.pdf

./E049-H3K27ME3_subsample-30e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E049-H3K27ME3_subsample-30e6.tagAlign.gz 59993666 195 0.471632263572334 35 0.4728725 1500 0.4612335 1.022546 0.8934418 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E049-H3K27ME3_subsample-5e6.cc.plot.pdf

./E049-H3K27ME3_subsample-5e6.cc.plot.pdf

./E049-H3K27ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E049-H3K27ME3_subsample-5e6.tagAlign.gz 9998946 195 0.130588396028737 35 0.1309408 1500 0.1275548 1.023783 0.8959311 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E049-H3K27ME3_subsample-7.5e6.cc.plot.pdf

./E049-H3K27ME3_subsample-7.5e6.cc.plot.pdf

./E049-H3K27ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E049-H3K27ME3_subsample-7.5e6.tagAlign.gz 14998364 200 0.183534705978632 35 0.1843925 1500 0.1794441 1.022796 0.8266605 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E049-H3K36ME3_merged.cc.plot.pdf

./E049-H3K36ME3_merged.cc.plot.pdf

./E049-H3K36ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E049-H3K36ME3_merged.tagAlign.gz 114783655 190 0.644741287613192 35 0.6513423 1500 0.6249513 1.031666 0.7498778 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E049-H3K36ME3_subsample-0.1e6.cc.plot.pdf

./E049-H3K36ME3_subsample-0.1e6.cc.plot.pdf

./E049-H3K36ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E049-H3K36ME3_subsample-0.1e6.tagAlign.gz 199989 140 0.00357011167643315 30 0.003538219 1500 0.003377856 1.056917 1.198875 1 E049-H3K36ME3_subsample-0.1e6.tagAlign.gz 199979 190 0.00353046030771136 35 0.003568796 1500 0.003278242 1.076937 0.86806 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E049-H3K36ME3_subsample-0.25e6.cc.plot.pdf

./E049-H3K36ME3_subsample-0.25e6.cc.plot.pdf

./E049-H3K36ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E049-H3K36ME3_subsample-0.25e6.tagAlign.gz 499956 180 0.00845115560514236 35 0.008415297 1500 0.0080466 1.050277 1.097258 1 E049-H3K36ME3_subsample-0.25e6.tagAlign.gz 499959 175 0.0084819183260614 30 0.008383034 1500 0.007930891 1.069479 1.218702 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E049-H3K36ME3_subsample-0.5e6.cc.plot.pdf

./E049-H3K36ME3_subsample-0.5e6.cc.plot.pdf

./E049-H3K36ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E049-H3K36ME3_subsample-0.5e6.tagAlign.gz 999914 150 0.0165949681886245 35 0.01676544 1500 0.01589272 1.044187 0.8046704 0 E049-H3K36ME3_subsample-0.5e6.tagAlign.gz 999914 230 0.0165505303797217 35 0.01671198 1500 0.01589249 1.041406 0.8029865 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E049-H3K36ME3_subsample-10e6.cc.plot.pdf

./E049-H3K36ME3_subsample-10e6.cc.plot.pdf

./E049-H3K36ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E049-H3K36ME3_subsample-10e6.tagAlign.gz 19998368 190 0.247515185225576 35 0.2510366 1500 0.2397204 1.032516 0.6888135 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E049-H3K36ME3_subsample-1e6.cc.plot.pdf

./E049-H3K36ME3_subsample-1e6.cc.plot.pdf

./E049-H3K36ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E049-H3K36ME3_subsample-1e6.tagAlign.gz 1999822 120 0.0323897870747992 35 0.03275925 1500 0.03124388 1.036676 0.7561904 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E049-H3K36ME3_subsample-2.5e6.cc.plot.pdf

./E049-H3K36ME3_subsample-2.5e6.cc.plot.pdf

./E049-H3K36ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E049-H3K36ME3_subsample-2.5e6.tagAlign.gz 4999578 210 0.0768381481235034 35 0.07789592 1500 0.07439254 1.032874 0.6980716 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E049-H3K36ME3_subsample-20e6.cc.plot.pdf

./E049-H3K36ME3_subsample-20e6.cc.plot.pdf

./E049-H3K36ME3_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E049-H3K36ME3_subsample-20e6.tagAlign.gz 39996718 185 0.393924710535976 35 0.3998304 1500 0.3815475 1.032439 0.6769831 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E049-H3K36ME3_subsample-30e6.cc.plot.pdf

./E049-H3K36ME3_subsample-30e6.cc.plot.pdf

./E049-H3K36ME3_subsample-30e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E049-H3K36ME3_subsample-30e6.tagAlign.gz 59995049 190 0.491168919927115 35 0.4977224 1500 0.4759368 1.032005 0.6991826 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E049-H3K36ME3_subsample-5e6.cc.plot.pdf

./E049-H3K36ME3_subsample-5e6.cc.plot.pdf

./E049-H3K36ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E049-H3K36ME3_subsample-5e6.tagAlign.gz 9999145 200 0.142120228217456 35 0.1442312 1500 0.1376217 1.032688 0.6806158 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E049-H3K36ME3_subsample-7.5e6.cc.plot.pdf

./E049-H3K36ME3_subsample-7.5e6.cc.plot.pdf

./E049-H3K36ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E049-H3K36ME3_subsample-7.5e6.tagAlign.gz 14998733 205 0.198480499924442 35 0.2014112 1500 0.1921885 1.032738 0.6822297 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E049-H3K4ME1_merged.cc.plot.pdf

./E049-H3K4ME1_merged.cc.plot.pdf

./E049-H3K4ME1_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E049-H3K4ME1_merged.tagAlign.gz 112306554 200 0.666868542366906 35 0.6510982 1500 0.5802598 1.149258 1.222623 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E049-H3K4ME1_subsample-0.1e6.cc.plot.pdf

./E049-H3K4ME1_subsample-0.1e6.cc.plot.pdf

./E049-H3K4ME1_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E049-H3K4ME1_subsample-0.1e6.tagAlign.gz 199983 185 0.00393241345158015 40 0.003584627 1500 0.003279098 1.199236 2.138309 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E049-H3K4ME1_subsample-0.25e6.cc.plot.pdf

./E049-H3K4ME1_subsample-0.25e6.cc.plot.pdf

./E049-H3K4ME1_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E049-H3K4ME1_subsample-0.25e6.tagAlign.gz 499938 180 0.00921555185463226 35 0.008843259 1500 0.007824164 1.177832 1.365317 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E049-H3K4ME1_subsample-0.5e6.cc.plot.pdf

./E049-H3K4ME1_subsample-0.5e6.cc.plot.pdf

./E049-H3K4ME1_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E049-H3K4ME1_subsample-0.5e6.tagAlign.gz 999898 225 0.0180729286448753 35 0.01746857 1500 0.01562297 1.156818 1.327461 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E049-H3K4ME1_subsample-10e6.cc.plot.pdf

./E049-H3K4ME1_subsample-10e6.cc.plot.pdf

./E049-H3K4ME1_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E049-H3K4ME1_subsample-10e6.tagAlign.gz 19998048 195 0.265951534927166 35 0.2598769 1500 0.2313484 1.149572 1.212934 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E049-H3K4ME1_subsample-1e6.cc.plot.pdf

./E049-H3K4ME1_subsample-1e6.cc.plot.pdf

./E049-H3K4ME1_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E049-H3K4ME1_subsample-1e6.tagAlign.gz 1999803 210 0.0353123949722027 40 0.03438631 1500 0.0305431 1.15615 1.240966 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E049-H3K4ME1_subsample-2.5e6.cc.plot.pdf

./E049-H3K4ME1_subsample-2.5e6.cc.plot.pdf

./E049-H3K4ME1_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E049-H3K4ME1_subsample-2.5e6.tagAlign.gz 4999489 195 0.0834725104304397 35 0.08150452 1500 0.07251728 1.151071 1.218976 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E049-H3K4ME1_subsample-20e6.cc.plot.pdf

./E049-H3K4ME1_subsample-20e6.cc.plot.pdf

./E049-H3K4ME1_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E049-H3K4ME1_subsample-20e6.tagAlign.gz 39996012 195 0.418907354203449 35 0.4095398 1500 0.3643645 1.149693 1.207361 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E049-H3K4ME1_subsample-30e6.cc.plot.pdf

./E049-H3K4ME1_subsample-30e6.cc.plot.pdf

./E049-H3K4ME1_subsample-30e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E049-H3K4ME1_subsample-30e6.tagAlign.gz 59994175 200 0.518436207056188 35 0.506787 1500 0.4511226 1.149214 1.209275 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E049-H3K4ME1_subsample-5e6.cc.plot.pdf

./E049-H3K4ME1_subsample-5e6.cc.plot.pdf

./E049-H3K4ME1_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E049-H3K4ME1_subsample-5e6.tagAlign.gz 9999013 190 0.153713595599317 35 0.1503382 1500 0.1336524 1.1501 1.202289 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E049-H3K4ME1_subsample-7.5e6.cc.plot.pdf

./E049-H3K4ME1_subsample-7.5e6.cc.plot.pdf

./E049-H3K4ME1_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E049-H3K4ME1_subsample-7.5e6.tagAlign.gz 14998535 200 0.213943768359487 35 0.2091015 1500 0.1861633 1.149226 1.211102 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E049-H3K4ME3_merged.cc.plot.pdf

./E049-H3K4ME3_merged.cc.plot.pdf

./E049-H3K4ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E049-H3K4ME3_merged.tagAlign.gz 101784917 190 0.797169854670395 35 0.7221986 1500 0.4679992 1.703357 1.294931 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E049-H3K4ME3_subsample-0.1e6.cc.plot.pdf

./E049-H3K4ME3_subsample-0.1e6.cc.plot.pdf

./E049-H3K4ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E049-H3K4ME3_subsample-0.1e6.tagAlign.gz 199989 185 0.0083217936786817 30 0.007370459 1500 0.004593196 1.811765 1.342544 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E049-H3K4ME3_subsample-0.25e6.cc.plot.pdf

./E049-H3K4ME3_subsample-0.25e6.cc.plot.pdf

./E049-H3K4ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E049-H3K4ME3_subsample-0.25e6.tagAlign.gz 499957 190 0.0198091729882115 35 0.01790687 1500 0.01150199 1.722239 1.297008 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E049-H3K4ME3_subsample-0.5e6.cc.plot.pdf

./E049-H3K4ME3_subsample-0.5e6.cc.plot.pdf

./E049-H3K4ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E049-H3K4ME3_subsample-0.5e6.tagAlign.gz 999921 190 0.0390238259767634 40 0.03515447 1500 0.02255052 1.730506 1.306996 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E049-H3K4ME3_subsample-10e6.cc.plot.pdf

./E049-H3K4ME3_subsample-10e6.cc.plot.pdf

./E049-H3K4ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E049-H3K4ME3_subsample-10e6.tagAlign.gz 19998477 190 0.441642785109371 35 0.3997581 1500 0.2581817 1.710589 1.295846 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E049-H3K4ME3_subsample-1e6.cc.plot.pdf

./E049-H3K4ME3_subsample-1e6.cc.plot.pdf

./E049-H3K4ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E049-H3K4ME3_subsample-1e6.tagAlign.gz 1999844 195 0.0745580129913296 40 0.06730035 1500 0.04362817 1.708942 1.30659 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E049-H3K4ME3_subsample-2.5e6.cc.plot.pdf

./E049-H3K4ME3_subsample-2.5e6.cc.plot.pdf

./E049-H3K4ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E049-H3K4ME3_subsample-2.5e6.tagAlign.gz 4999613 185 0.166956340326908 35 0.1507583 1500 0.09759651 1.710679 1.304693 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E049-H3K4ME3_subsample-20e6.cc.plot.pdf

./E049-H3K4ME3_subsample-20e6.cc.plot.pdf

./E049-H3K4ME3_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E049-H3K4ME3_subsample-20e6.tagAlign.gz 39996976 190 0.611401722195078 35 0.5534735 1500 0.3572793 1.711271 1.29526 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E049-H3K4ME3_subsample-30e6.cc.plot.pdf

./E049-H3K4ME3_subsample-30e6.cc.plot.pdf

./E049-H3K4ME3_subsample-30e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E049-H3K4ME3_subsample-30e6.tagAlign.gz 59995596 190 0.701323982736091 35 0.6347896 1500 0.4099851 1.710608 1.295966 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E049-H3K4ME3_subsample-5e6.cc.plot.pdf

./E049-H3K4ME3_subsample-5e6.cc.plot.pdf

./E049-H3K4ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E049-H3K4ME3_subsample-5e6.tagAlign.gz 9999220 185 0.285120236559098 35 0.2578154 1500 0.1664154 1.713305 1.29874 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E049-H3K4ME3_subsample-7.5e6.cc.plot.pdf

./E049-H3K4ME3_subsample-7.5e6.cc.plot.pdf

./E049-H3K4ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E049-H3K4ME3_subsample-7.5e6.tagAlign.gz 14998913 190 0.373206804903576 35 0.3379085 1500 0.2181165 1.711044 1.294663 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E049-H3K9ME3_merged.cc.plot.pdf

./E049-H3K9ME3_merged.cc.plot.pdf

./E049-H3K9ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E049-H3K9ME3_merged.tagAlign.gz 87280619 180 0.544926967419308 35 0.5578491 1500 0.5338474 1.020754 0.4616152 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E049-H3K9ME3_subsample-0.1e6.cc.plot.pdf

./E049-H3K9ME3_subsample-0.1e6.cc.plot.pdf

./E049-H3K9ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E049-H3K9ME3_subsample-0.1e6.tagAlign.gz 199968 -45 0.0033580023104202 40 0.003241402 1500 0.003163358 1.061531 2.494022 2 E049-H3K9ME3_subsample-0.1e6.tagAlign.gz 199967 -150 0.00325075012907434 35 0.003249443 1500 0.003000819 1.083287 1.005256 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E049-H3K9ME3_subsample-0.25e6.cc.plot.pdf

./E049-H3K9ME3_subsample-0.25e6.cc.plot.pdf

./E049-H3K9ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E049-H3K9ME3_subsample-0.25e6.tagAlign.gz 499911 105 0.00743255733822461 35 0.007765286 1500 0.007216848 1.02989 0.3933166 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E049-H3K9ME3_subsample-0.5e6.cc.plot.pdf

./E049-H3K9ME3_subsample-0.5e6.cc.plot.pdf

./E049-H3K9ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E049-H3K9ME3_subsample-0.5e6.tagAlign.gz 999826 195 0.0146495996515794 35 0.01538223 1500 0.01418392 1.032832 0.3886159 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E049-H3K9ME3_subsample-10e6.cc.plot.pdf

./E049-H3K9ME3_subsample-10e6.cc.plot.pdf

./E049-H3K9ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E049-H3K9ME3_subsample-10e6.tagAlign.gz 19996672 185 0.224048791963734 35 0.2362919 1500 0.2186046 1.024904 0.3078011 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E049-H3K9ME3_subsample-1e6.cc.plot.pdf

./E049-H3K9ME3_subsample-1e6.cc.plot.pdf

./E049-H3K9ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E049-H3K9ME3_subsample-1e6.tagAlign.gz 1999712 160 0.0287140118220763 35 0.03031605 1500 0.02801335 1.025012 0.3042771 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E049-H3K9ME3_subsample-2.5e6.cc.plot.pdf

./E049-H3K9ME3_subsample-2.5e6.cc.plot.pdf

./E049-H3K9ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E049-H3K9ME3_subsample-2.5e6.tagAlign.gz 4999197 180 0.0685104391689566 35 0.07234676 1500 0.06672076 1.026823 0.3181082 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E049-H3K9ME3_subsample-20e6.cc.plot.pdf

./E049-H3K9ME3_subsample-20e6.cc.plot.pdf

./E049-H3K9ME3_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E049-H3K9ME3_subsample-20e6.tagAlign.gz 39993539 190 0.361187507714638 35 0.3784589 1500 0.3529377 1.023375 0.3232534 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E049-H3K9ME3_subsample-30e6.cc.plot.pdf

./E049-H3K9ME3_subsample-30e6.cc.plot.pdf

./E049-H3K9ME3_subsample-30e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E049-H3K9ME3_subsample-30e6.tagAlign.gz 59990401 180 0.454952385720707 35 0.4700339 1500 0.44535 1.021561 0.3890144 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E049-H3K9ME3_subsample-5e6.cc.plot.pdf

./E049-H3K9ME3_subsample-5e6.cc.plot.pdf

./E049-H3K9ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E049-H3K9ME3_subsample-5e6.tagAlign.gz 9998451 190 0.127392971021523 35 0.1344391 1500 0.1243467 1.024498 0.3018397 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E049-H3K9ME3_subsample-7.5e6.cc.plot.pdf

./E049-H3K9ME3_subsample-7.5e6.cc.plot.pdf

./E049-H3K9ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E049-H3K9ME3_subsample-7.5e6.tagAlign.gz 14997630 180 0.178902776460398 35 0.1887325 1500 0.1744601 1.025465 0.3112764 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E050-H3K27AC_merged.cc.plot.pdf

./E050-H3K27AC_merged.cc.plot.pdf

./E050-H3K27AC_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E050-H3K27AC_merged.tagAlign.gz 27467735 225 0.360894844031099 35 0.3322668 1500 0.272345 1.325138 1.477757 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E050-H3K27AC_subsample-0.1e6.cc.plot.pdf

./E050-H3K27AC_subsample-0.1e6.cc.plot.pdf

./E050-H3K27AC_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E050-H3K27AC_subsample-0.1e6.tagAlign.gz 199986 300 0.00445132103298529 35 0.004072494 1500 0.003353748 1.327268 1.527067 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E050-H3K27AC_subsample-0.25e6.cc.plot.pdf

./E050-H3K27AC_subsample-0.25e6.cc.plot.pdf

./E050-H3K27AC_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E050-H3K27AC_subsample-0.25e6.tagAlign.gz 499972 250 0.0107476972169357 30 0.009750868 1500 0.007857099 1.367896 1.526373 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E050-H3K27AC_subsample-0.5e6.cc.plot.pdf

./E050-H3K27AC_subsample-0.5e6.cc.plot.pdf

./E050-H3K27AC_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E050-H3K27AC_subsample-0.5e6.tagAlign.gz 999943 225 0.0211247461011037 40 0.0192281 1500 0.01575446 1.340874 1.546012 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E050-H3K27AC_subsample-10e6.cc.plot.pdf

./E050-H3K27AC_subsample-10e6.cc.plot.pdf

./E050-H3K27AC_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E050-H3K27AC_subsample-10e6.tagAlign.gz 19998895 225 0.293707570297458 35 0.2708619 1500 0.2205844 1.331497 1.454391 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E050-H3K27AC_subsample-1e6.cc.plot.pdf

./E050-H3K27AC_subsample-1e6.cc.plot.pdf

./E050-H3K27AC_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E050-H3K27AC_subsample-1e6.tagAlign.gz 1999898 210 0.0409586360620741 35 0.03782896 1500 0.03054068 1.341117 1.429412 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E050-H3K27AC_subsample-2.5e6.cc.plot.pdf

./E050-H3K27AC_subsample-2.5e6.cc.plot.pdf

./E050-H3K27AC_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E050-H3K27AC_subsample-2.5e6.tagAlign.gz 4999707 225 0.0960611061178733 35 0.08852729 1500 0.07177444 1.338375 1.449704 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E050-H3K27AC_subsample-5e6.cc.plot.pdf

./E050-H3K27AC_subsample-5e6.cc.plot.pdf

./E050-H3K27AC_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E050-H3K27AC_subsample-5e6.tagAlign.gz 9999444 220 0.174134789981219 35 0.1610579 1500 0.1301385 1.338073 1.422932 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E050-H3K27AC_subsample-7.5e6.cc.plot.pdf

./E050-H3K27AC_subsample-7.5e6.cc.plot.pdf

./E050-H3K27AC_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E050-H3K27AC_subsample-7.5e6.tagAlign.gz 14999201 225 0.23900655979499 35 0.2210052 1500 0.1789061 1.335933 1.427594 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E050-H3K27ME3_merged.cc.plot.pdf

./E050-H3K27ME3_merged.cc.plot.pdf

./E050-H3K27ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E050-H3K27ME3_merged.tagAlign.gz 96927667 195 0.585344906955894 35 0.5871624 1500 0.5721456 1.02307 0.8789682 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E050-H3K27ME3_subsample-0.1e6.cc.plot.pdf

./E050-H3K27ME3_subsample-0.1e6.cc.plot.pdf

./E050-H3K27ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E050-H3K27ME3_subsample-0.1e6.tagAlign.gz 199991 60 0.00330584573005602 30 0.003241143 1500 0.00318763 1.037086 2.209104 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E050-H3K27ME3_subsample-0.25e6.cc.plot.pdf

./E050-H3K27ME3_subsample-0.25e6.cc.plot.pdf

./E050-H3K27ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E050-H3K27ME3_subsample-0.25e6.tagAlign.gz 499967 175 0.00764591583657829 40 0.007641711 1500 0.007336132 1.042227 1.01376 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E050-H3K27ME3_subsample-0.5e6.cc.plot.pdf

./E050-H3K27ME3_subsample-0.5e6.cc.plot.pdf

./E050-H3K27ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E050-H3K27ME3_subsample-0.5e6.tagAlign.gz 999943 225 0.0149958164555903 35 0.01517204 1500 0.01453649 1.031598 0.7227197 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E050-H3K27ME3_subsample-10e6.cc.plot.pdf

./E050-H3K27ME3_subsample-10e6.cc.plot.pdf

./E050-H3K27ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E050-H3K27ME3_subsample-10e6.tagAlign.gz 19998767 200 0.230142848933222 35 0.2343201 1500 0.2243027 1.026037 0.5829999 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E050-H3K27ME3_subsample-1e6.cc.plot.pdf

./E050-H3K27ME3_subsample-1e6.cc.plot.pdf

./E050-H3K27ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E050-H3K27ME3_subsample-1e6.tagAlign.gz 1999860 205 0.0294257140046301 35 0.02983786 1500 0.02867918 1.026031 0.6443003 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E050-H3K27ME3_subsample-2.5e6.cc.plot.pdf

./E050-H3K27ME3_subsample-2.5e6.cc.plot.pdf

./E050-H3K27ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E050-H3K27ME3_subsample-2.5e6.tagAlign.gz 4999694 215 0.0702022935117992 35 0.07154317 1500 0.06834967 1.027105 0.5801241 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E050-H3K27ME3_subsample-20e6.cc.plot.pdf

./E050-H3K27ME3_subsample-20e6.cc.plot.pdf

./E050-H3K27ME3_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E050-H3K27ME3_subsample-20e6.tagAlign.gz 39997560 185 0.371780937954988 35 0.375765 1500 0.3627742 1.024827 0.6933142 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E050-H3K27ME3_subsample-30e6.cc.plot.pdf

./E050-H3K27ME3_subsample-30e6.cc.plot.pdf

./E050-H3K27ME3_subsample-30e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E050-H3K27ME3_subsample-30e6.tagAlign.gz 59996258 185 0.468582627702977 35 0.4713961 1500 0.4578358 1.023473 0.7925194 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E050-H3K27ME3_subsample-5e6.cc.plot.pdf

./E050-H3K27ME3_subsample-5e6.cc.plot.pdf

./E050-H3K27ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E050-H3K27ME3_subsample-5e6.tagAlign.gz 9999392 185 0.130811837645965 35 0.1333195 1500 0.1274115 1.026688 0.5755414 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E050-H3K27ME3_subsample-7.5e6.cc.plot.pdf

./E050-H3K27ME3_subsample-7.5e6.cc.plot.pdf

./E050-H3K27ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E050-H3K27ME3_subsample-7.5e6.tagAlign.gz 14999088 190 0.1836800832224 35 0.1869693 1500 0.1789316 1.026538 0.5907793 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E050-H3K36ME3_merged.cc.plot.pdf

./E050-H3K36ME3_merged.cc.plot.pdf

./E050-H3K36ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E050-H3K36ME3_merged.tagAlign.gz 86085219 190 0.569665879646585 35 0.5748455 1500 0.5530919 1.029966 0.761896 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E050-H3K36ME3_subsample-0.1e6.cc.plot.pdf

./E050-H3K36ME3_subsample-0.1e6.cc.plot.pdf

./E050-H3K36ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E050-H3K36ME3_subsample-0.1e6.tagAlign.gz 199985 855 0.00348455805287685 30 0.003419467 1500 0.003220945 1.081843 1.327882 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E050-H3K36ME3_subsample-0.25e6.cc.plot.pdf

./E050-H3K36ME3_subsample-0.25e6.cc.plot.pdf

./E050-H3K36ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E050-H3K36ME3_subsample-0.25e6.tagAlign.gz 499973 140 0.00822942740271872 40 0.008304995 1500 0.007765615 1.059726 0.8598984 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E050-H3K36ME3_subsample-0.5e6.cc.plot.pdf

./E050-H3K36ME3_subsample-0.5e6.cc.plot.pdf

./E050-H3K36ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E050-H3K36ME3_subsample-0.5e6.tagAlign.gz 999918 175 0.0162028667424176 35 0.01639616 1500 0.01558259 1.039805 0.76241 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E050-H3K36ME3_subsample-10e6.cc.plot.pdf

./E050-H3K36ME3_subsample-10e6.cc.plot.pdf

./E050-H3K36ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E050-H3K36ME3_subsample-10e6.tagAlign.gz 19998607 170 0.242952422509593 35 0.2467832 1500 0.2355608 1.031379 0.6586485 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E050-H3K36ME3_subsample-1e6.cc.plot.pdf

./E050-H3K36ME3_subsample-1e6.cc.plot.pdf

./E050-H3K36ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E050-H3K36ME3_subsample-1e6.tagAlign.gz 1999857 200 0.0316955642028264 35 0.03216119 1500 0.03069073 1.032741 0.6833463 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E050-H3K36ME3_subsample-2.5e6.cc.plot.pdf

./E050-H3K36ME3_subsample-2.5e6.cc.plot.pdf

./E050-H3K36ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E050-H3K36ME3_subsample-2.5e6.tagAlign.gz 4999651 190 0.0753068470353647 35 0.0765426 1500 0.07296624 1.032078 0.6544675 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E050-H3K36ME3_subsample-20e6.cc.plot.pdf

./E050-H3K36ME3_subsample-20e6.cc.plot.pdf

./E050-H3K36ME3_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E050-H3K36ME3_subsample-20e6.tagAlign.gz 39997180 185 0.387022896760322 35 0.3920402 1500 0.3755889 1.030443 0.6950218 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E050-H3K36ME3_subsample-30e6.cc.plot.pdf

./E050-H3K36ME3_subsample-30e6.cc.plot.pdf

./E050-H3K36ME3_subsample-30e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E050-H3K36ME3_subsample-30e6.tagAlign.gz 59995779 190 0.483226973001768 35 0.4883714 1500 0.4691677 1.029966 0.7321137 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E050-H3K36ME3_subsample-5e6.cc.plot.pdf

./E050-H3K36ME3_subsample-5e6.cc.plot.pdf

./E050-H3K36ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E050-H3K36ME3_subsample-5e6.tagAlign.gz 9999299 180 0.139400563995555 35 0.141521 1500 0.1351261 1.031633 0.6684146 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E050-H3K36ME3_subsample-7.5e6.cc.plot.pdf

./E050-H3K36ME3_subsample-7.5e6.cc.plot.pdf

./E050-H3K36ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E050-H3K36ME3_subsample-7.5e6.tagAlign.gz 14998929 185 0.194702061378604 35 0.1976985 1500 0.1887428 1.031574 0.6654179 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E050-H3K4ME1_merged.cc.plot.pdf

./E050-H3K4ME1_merged.cc.plot.pdf

./E050-H3K4ME1_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E050-H3K4ME1_merged.tagAlign.gz 44597997 210 0.452722297129646 35 0.4483666 1500 0.3931261 1.151596 1.07885 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E050-H3K4ME1_subsample-0.1e6.cc.plot.pdf

./E050-H3K4ME1_subsample-0.1e6.cc.plot.pdf

./E050-H3K4ME1_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E050-H3K4ME1_subsample-0.1e6.tagAlign.gz 199980 55 0.00423791356799133 40 0.00384006 1500 0.003343981 1.267326 1.801998 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E050-H3K4ME1_subsample-0.25e6.cc.plot.pdf

./E050-H3K4ME1_subsample-0.25e6.cc.plot.pdf

./E050-H3K4ME1_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E050-H3K4ME1_subsample-0.25e6.tagAlign.gz 499950 250 0.00995437584185127 30 0.009744354 1500 0.008481772 1.17362 1.166343 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E050-H3K4ME1_subsample-0.5e6.cc.plot.pdf

./E050-H3K4ME1_subsample-0.5e6.cc.plot.pdf

./E050-H3K4ME1_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E050-H3K4ME1_subsample-0.5e6.tagAlign.gz 999878 260 0.0192862805344813 35 0.01902797 1500 0.01672695 1.153007 1.112259 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E050-H3K4ME1_subsample-10e6.cc.plot.pdf

./E050-H3K4ME1_subsample-10e6.cc.plot.pdf

./E050-H3K4ME1_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E050-H3K4ME1_subsample-10e6.tagAlign.gz 19997705 220 0.275521582972112 35 0.2741195 1500 0.2390294 1.152668 1.039958 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E050-H3K4ME1_subsample-1e6.cc.plot.pdf

./E050-H3K4ME1_subsample-1e6.cc.plot.pdf

./E050-H3K4ME1_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E050-H3K4ME1_subsample-1e6.tagAlign.gz 1999772 210 0.0376853574570923 35 0.0373305 1500 0.03258723 1.156446 1.074814 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E050-H3K4ME1_subsample-2.5e6.cc.plot.pdf

./E050-H3K4ME1_subsample-2.5e6.cc.plot.pdf

./E050-H3K4ME1_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E050-H3K4ME1_subsample-2.5e6.tagAlign.gz 4999423 210 0.088446673140714 35 0.0882955 1500 0.07667684 1.153499 1.013012 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E050-H3K4ME1_subsample-20e6.cc.plot.pdf

./E050-H3K4ME1_subsample-20e6.cc.plot.pdf

./E050-H3K4ME1_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E050-H3K4ME1_subsample-20e6.tagAlign.gz 39995465 210 0.426968279262883 35 0.4230987 1500 0.37071 1.151758 1.073863 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E050-H3K4ME1_subsample-5e6.cc.plot.pdf

./E050-H3K4ME1_subsample-5e6.cc.plot.pdf

./E050-H3K4ME1_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E050-H3K4ME1_subsample-5e6.tagAlign.gz 9998826 195 0.161487208085668 35 0.1610302 1500 0.1401009 1.152649 1.021835 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E050-H3K4ME1_subsample-7.5e6.cc.plot.pdf

./E050-H3K4ME1_subsample-7.5e6.cc.plot.pdf

./E050-H3K4ME1_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E050-H3K4ME1_subsample-7.5e6.tagAlign.gz 14998289 210 0.223208670787735 35 0.2221451 1500 0.1933874 1.154205 1.036982 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E050-H3K4ME3_merged.cc.plot.pdf

./E050-H3K4ME3_merged.cc.plot.pdf

./E050-H3K4ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E050-H3K4ME3_merged.tagAlign.gz 53979705 175 0.594133262244673 35 0.5622711 1500 0.3797314 1.564614 1.174549 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E050-H3K4ME3_subsample-0.1e6.cc.plot.pdf

./E050-H3K4ME3_subsample-0.1e6.cc.plot.pdf

./E050-H3K4ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E050-H3K4ME3_subsample-0.1e6.tagAlign.gz 199984 170 0.00591093764800462 40 0.005413744 1500 0.003573595 1.654059 1.270192 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E050-H3K4ME3_subsample-0.25e6.cc.plot.pdf

./E050-H3K4ME3_subsample-0.25e6.cc.plot.pdf

./E050-H3K4ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E050-H3K4ME3_subsample-0.25e6.tagAlign.gz 499964 185 0.0140762392148673 35 0.01311002 1500 0.008717498 1.614711 1.21997 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E050-H3K4ME3_subsample-0.5e6.cc.plot.pdf

./E050-H3K4ME3_subsample-0.5e6.cc.plot.pdf

./E050-H3K4ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E050-H3K4ME3_subsample-0.5e6.tagAlign.gz 999926 205 0.0275850192873451 35 0.02618122 1500 0.01735651 1.589318 1.159076 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E050-H3K4ME3_subsample-10e6.cc.plot.pdf

./E050-H3K4ME3_subsample-10e6.cc.plot.pdf

./E050-H3K4ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E050-H3K4ME3_subsample-10e6.tagAlign.gz 19998653 175 0.355446697415443 35 0.3384978 1500 0.2264757 1.569469 1.1513 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E050-H3K4ME3_subsample-1e6.cc.plot.pdf

./E050-H3K4ME3_subsample-1e6.cc.plot.pdf

./E050-H3K4ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E050-H3K4ME3_subsample-1e6.tagAlign.gz 1999857 190 0.0532576213458929 35 0.05059233 1500 0.03384428 1.573608 1.15914 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E050-H3K4ME3_subsample-2.5e6.cc.plot.pdf

./E050-H3K4ME3_subsample-2.5e6.cc.plot.pdf

./E050-H3K4ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E050-H3K4ME3_subsample-2.5e6.tagAlign.gz 4999636 185 0.122955209725415 35 0.1169167 1500 0.07805631 1.575212 1.155389 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E050-H3K4ME3_subsample-20e6.cc.plot.pdf

./E050-H3K4ME3_subsample-20e6.cc.plot.pdf

./E050-H3K4ME3_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E050-H3K4ME3_subsample-20e6.tagAlign.gz 39997229 170 0.521332411860163 35 0.4946266 1500 0.3329619 1.565742 1.165193 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E050-H3K4ME3_subsample-5e6.cc.plot.pdf

./E050-H3K4ME3_subsample-5e6.cc.plot.pdf

./E050-H3K4ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E050-H3K4ME3_subsample-5e6.tagAlign.gz 9999314 180 0.217838109720997 35 0.2073313 1500 0.1385968 1.571739 1.152861 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E050-H3K4ME3_subsample-7.5e6.cc.plot.pdf

./E050-H3K4ME3_subsample-7.5e6.cc.plot.pdf

./E050-H3K4ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E050-H3K4ME3_subsample-7.5e6.tagAlign.gz 14999011 185 0.293520817500394 35 0.2797067 1500 0.1869352 1.570174 1.148905 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E050-H3K9ME3_merged.cc.plot.pdf

./E050-H3K9ME3_merged.cc.plot.pdf

./E050-H3K9ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E050-H3K9ME3_merged.tagAlign.gz 60066623 155 0.456615755596581 35 0.4725919 1500 0.4420615 1.032924 0.4767131 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E050-H3K9ME3_subsample-0.1e6.cc.plot.pdf

./E050-H3K9ME3_subsample-0.1e6.cc.plot.pdf

./E050-H3K9ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E050-H3K9ME3_subsample-0.1e6.tagAlign.gz 199979 695 0.00331495150556616 35 0.0036627 1500 0.003092534 1.071921 0.3900928 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E050-H3K9ME3_subsample-0.25e6.cc.plot.pdf

./E050-H3K9ME3_subsample-0.25e6.cc.plot.pdf

./E050-H3K9ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E050-H3K9ME3_subsample-0.25e6.tagAlign.gz 499962 50 0.00798683063679672 35 0.008453391 1500 0.007259045 1.100259 0.6093592 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E050-H3K9ME3_subsample-0.5e6.cc.plot.pdf

./E050-H3K9ME3_subsample-0.5e6.cc.plot.pdf

./E050-H3K9ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E050-H3K9ME3_subsample-0.5e6.tagAlign.gz 999926 155 0.0152766985870208 35 0.01682165 1500 0.01449926 1.053619 0.3347584 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E050-H3K9ME3_subsample-10e6.cc.plot.pdf

./E050-H3K9ME3_subsample-10e6.cc.plot.pdf

./E050-H3K9ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E050-H3K9ME3_subsample-10e6.tagAlign.gz 19998541 140 0.22691440449692 35 0.2495296 1500 0.2177005 1.042324 0.2894811 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E050-H3K9ME3_subsample-1e6.cc.plot.pdf

./E050-H3K9ME3_subsample-1e6.cc.plot.pdf

./E050-H3K9ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E050-H3K9ME3_subsample-1e6.tagAlign.gz 1999856 135 0.0298335048685679 35 0.03321088 1500 0.02848337 1.047401 0.2855906 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E050-H3K9ME3_subsample-2.5e6.cc.plot.pdf

./E050-H3K9ME3_subsample-2.5e6.cc.plot.pdf

./E050-H3K9ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E050-H3K9ME3_subsample-2.5e6.tagAlign.gz 4999654 175 0.0705140813253784 35 0.07863257 1500 0.06744729 1.045469 0.2741808 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E050-H3K9ME3_subsample-20e6.cc.plot.pdf

./E050-H3K9ME3_subsample-20e6.cc.plot.pdf

./E050-H3K9ME3_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E050-H3K9ME3_subsample-20e6.tagAlign.gz 39997216 160 0.362437164323442 35 0.3808348 1500 0.3502273 1.034863 0.3989178 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E050-H3K9ME3_subsample-30e6.cc.plot.pdf

./E050-H3K9ME3_subsample-30e6.cc.plot.pdf

./E050-H3K9ME3_subsample-30e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E050-H3K9ME3_subsample-30e6.tagAlign.gz 59995795 155 0.456333524931815 35 0.472323 1500 0.4417865 1.032928 0.4763808 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E050-H3K9ME3_subsample-5e6.cc.plot.pdf

./E050-H3K9ME3_subsample-5e6.cc.plot.pdf

./E050-H3K9ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E050-H3K9ME3_subsample-5e6.tagAlign.gz 9999279 145 0.130622697355674 35 0.1454139 1500 0.1250149 1.044857 0.274905 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E050-H3K9ME3_subsample-7.5e6.cc.plot.pdf

./E050-H3K9ME3_subsample-7.5e6.cc.plot.pdf

./E050-H3K9ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E050-H3K9ME3_subsample-7.5e6.tagAlign.gz 14998931 135 0.18213995203636 35 0.2023096 1500 0.174442 1.044129 0.2762326 -1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E055-H3K27AC_merged.cc.plot.pdf

./E055-H3K27AC_merged.cc.plot.pdf

./E055-H3K27AC_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E055-H3K27AC_merged.tagAlign.gz 27117745 160 0.359348725232038 40 0.3186777 1500 0.2831505 1.269108 2.144788 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E055-H3K27AC_subsample-0.1e6.cc.plot.pdf

./E055-H3K27AC_subsample-0.1e6.cc.plot.pdf

./E055-H3K27AC_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E055-H3K27AC_subsample-0.1e6.tagAlign.gz 199960 150 0.00399439906341037 40 0.003495866 1500 0.003207128 1.245475 2.726591 2 E055-H3K27AC_subsample-0.1e6.tagAlign.gz 199975 150 0.00417907696372256 40 0.003686742 1500 0.00315073 1.326384 1.918513 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E055-H3K27AC_subsample-0.25e6.cc.plot.pdf

./E055-H3K27AC_subsample-0.25e6.cc.plot.pdf

./E055-H3K27AC_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E055-H3K27AC_subsample-0.25e6.tagAlign.gz 499908 165 0.0100560314637116 40 0.008798859 1500 0.007692785 1.307203 2.136607 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E055-H3K27AC_subsample-0.5e6.cc.plot.pdf

./E055-H3K27AC_subsample-0.5e6.cc.plot.pdf

./E055-H3K27AC_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E055-H3K27AC_subsample-0.5e6.tagAlign.gz 999785 165 0.0193553897102534 35 0.01714757 1500 0.01526204 1.268204 2.170926 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E055-H3K27AC_subsample-10e6.cc.plot.pdf

./E055-H3K27AC_subsample-10e6.cc.plot.pdf

./E055-H3K27AC_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E055-H3K27AC_subsample-10e6.tagAlign.gz 19996110 160 0.289570801025158 40 0.2569057 1500 0.2282452 1.268683 2.139721 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E055-H3K27AC_subsample-1e6.cc.plot.pdf

./E055-H3K27AC_subsample-1e6.cc.plot.pdf

./E055-H3K27AC_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E055-H3K27AC_subsample-1e6.tagAlign.gz 1999568 160 0.0379612158025007 40 0.03369957 1500 0.02980276 1.273748 2.093626 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E055-H3K27AC_subsample-2.5e6.cc.plot.pdf

./E055-H3K27AC_subsample-2.5e6.cc.plot.pdf

./E055-H3K27AC_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E055-H3K27AC_subsample-2.5e6.tagAlign.gz 4999034 160 0.0901453114184646 35 0.07993711 1500 0.0710938 1.267977 2.154342 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E055-H3K27AC_subsample-5e6.cc.plot.pdf

./E055-H3K27AC_subsample-5e6.cc.plot.pdf

./E055-H3K27AC_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E055-H3K27AC_subsample-5e6.tagAlign.gz 9998083 160 0.166700768571398 40 0.1478014 1500 0.1313301 1.269327 2.147406 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E055-H3K27AC_subsample-7.5e6.cc.plot.pdf

./E055-H3K27AC_subsample-7.5e6.cc.plot.pdf

./E055-H3K27AC_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E055-H3K27AC_subsample-7.5e6.tagAlign.gz 14997058 160 0.232338105649264 40 0.2061432 1500 0.1831744 1.268398 2.140451 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E055-H3K27ME3_merged.cc.plot.pdf

./E055-H3K27ME3_merged.cc.plot.pdf

./E055-H3K27ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E055-H3K27ME3_merged.tagAlign.gz 53348732 185 0.462809361323819 35 0.4610711 1500 0.4468791 1.035648 1.122482 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E055-H3K27ME3_subsample-0.1e6.cc.plot.pdf

./E055-H3K27ME3_subsample-0.1e6.cc.plot.pdf

./E055-H3K27ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E055-H3K27ME3_subsample-0.1e6.tagAlign.gz 199994 150 0.00349369452445359 40 0.003340747 1500 0.003278542 1.065624 3.458801 2 E055-H3K27ME3_subsample-0.1e6.tagAlign.gz 199997 290 0.00346674692400967 30 0.003284179 1500 0.003282519 1.056124 110.9905 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E055-H3K27ME3_subsample-0.25e6.cc.plot.pdf

./E055-H3K27ME3_subsample-0.25e6.cc.plot.pdf

./E055-H3K27ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E055-H3K27ME3_subsample-0.25e6.tagAlign.gz 499987 240 0.00819556188068093 30 0.008108333 1500 0.007754857 1.05683 1.246776 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E055-H3K27ME3_subsample-0.5e6.cc.plot.pdf

./E055-H3K27ME3_subsample-0.5e6.cc.plot.pdf

./E055-H3K27ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E055-H3K27ME3_subsample-0.5e6.tagAlign.gz 999987 175 0.0161524776908981 35 0.01605032 1500 0.01530449 1.055408 1.136974 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E055-H3K27ME3_subsample-10e6.cc.plot.pdf

./E055-H3K27ME3_subsample-10e6.cc.plot.pdf

./E055-H3K27ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E055-H3K27ME3_subsample-10e6.tagAlign.gz 19999643 190 0.244172898361806 35 0.243216 1500 0.2357591 1.035688 1.128328 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E055-H3K27ME3_subsample-1e6.cc.plot.pdf

./E055-H3K27ME3_subsample-1e6.cc.plot.pdf

./E055-H3K27ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E055-H3K27ME3_subsample-1e6.tagAlign.gz 1999963 170 0.031517969671429 35 0.0312194 1500 0.03038364 1.037334 1.35724 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E055-H3K27ME3_subsample-2.5e6.cc.plot.pdf

./E055-H3K27ME3_subsample-2.5e6.cc.plot.pdf

./E055-H3K27ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E055-H3K27ME3_subsample-2.5e6.tagAlign.gz 4999904 180 0.0750123605604462 35 0.07462431 1500 0.0724242 1.035736 1.176377 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E055-H3K27ME3_subsample-20e6.cc.plot.pdf

./E055-H3K27ME3_subsample-20e6.cc.plot.pdf

./E055-H3K27ME3_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E055-H3K27ME3_subsample-20e6.tagAlign.gz 39999321 190 0.392278332312735 35 0.3907469 1500 0.3787957 1.035593 1.128145 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E055-H3K27ME3_subsample-5e6.cc.plot.pdf

./E055-H3K27ME3_subsample-5e6.cc.plot.pdf

./E055-H3K27ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E055-H3K27ME3_subsample-5e6.tagAlign.gz 9999827 185 0.139355763144454 35 0.1387465 1500 0.1344894 1.036184 1.143105 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E055-H3K27ME3_subsample-7.5e6.cc.plot.pdf

./E055-H3K27ME3_subsample-7.5e6.cc.plot.pdf

./E055-H3K27ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E055-H3K27ME3_subsample-7.5e6.tagAlign.gz 14999744 185 0.195245584566615 35 0.1944085 1500 0.1884305 1.036167 1.140026 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E055-H3K36ME3_merged.cc.plot.pdf

./E055-H3K36ME3_merged.cc.plot.pdf

./E055-H3K36ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E055-H3K36ME3_merged.tagAlign.gz 53271709 190 0.460324788512369 35 0.4606291 1500 0.4451047 1.034194 0.9803989 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E055-H3K36ME3_subsample-0.1e6.cc.plot.pdf

./E055-H3K36ME3_subsample-0.1e6.cc.plot.pdf

./E055-H3K36ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E055-H3K36ME3_subsample-0.1e6.tagAlign.gz 199998 445 0.00352275460073321 30 0.003301816 1500 0.003246097 1.085228 4.965196 2 E055-H3K36ME3_subsample-0.1e6.tagAlign.gz 200000 180 0.00356583277875123 35 0.003401851 1500 0.003355604 1.06265 4.545734 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E055-H3K36ME3_subsample-0.25e6.cc.plot.pdf

./E055-H3K36ME3_subsample-0.25e6.cc.plot.pdf

./E055-H3K36ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E055-H3K36ME3_subsample-0.25e6.tagAlign.gz 499997 105 0.00819883147678079 30 0.008133523 1500 0.007824536 1.047836 1.211364 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E055-H3K36ME3_subsample-0.5e6.cc.plot.pdf

./E055-H3K36ME3_subsample-0.5e6.cc.plot.pdf

./E055-H3K36ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E055-H3K36ME3_subsample-0.5e6.tagAlign.gz 999991 210 0.0160878754643071 35 0.01605883 1500 0.01548861 1.038691 1.050946 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E055-H3K36ME3_subsample-10e6.cc.plot.pdf

./E055-H3K36ME3_subsample-10e6.cc.plot.pdf

./E055-H3K36ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E055-H3K36ME3_subsample-10e6.tagAlign.gz 19999820 190 0.243783531325183 35 0.2439633 1500 0.2356013 1.034729 0.978505 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E055-H3K36ME3_subsample-1e6.cc.plot.pdf

./E055-H3K36ME3_subsample-1e6.cc.plot.pdf

./E055-H3K36ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E055-H3K36ME3_subsample-1e6.tagAlign.gz 1999983 180 0.0316470779305898 40 0.0315756 1500 0.03049398 1.037814 1.06608 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E055-H3K36ME3_subsample-2.5e6.cc.plot.pdf

./E055-H3K36ME3_subsample-2.5e6.cc.plot.pdf

./E055-H3K36ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E055-H3K36ME3_subsample-2.5e6.tagAlign.gz 4999961 180 0.0751560947324631 35 0.07523395 1500 0.07264954 1.034502 0.9698736 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E055-H3K36ME3_subsample-20e6.cc.plot.pdf

./E055-H3K36ME3_subsample-20e6.cc.plot.pdf

./E055-H3K36ME3_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E055-H3K36ME3_subsample-20e6.tagAlign.gz 39999657 190 0.390717952969872 35 0.3910103 1500 0.3778256 1.034123 0.9778256 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E055-H3K36ME3_subsample-5e6.cc.plot.pdf

./E055-H3K36ME3_subsample-5e6.cc.plot.pdf

./E055-H3K36ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E055-H3K36ME3_subsample-5e6.tagAlign.gz 9999910 195 0.139342110105621 35 0.1393679 1500 0.1347177 1.034327 0.9944458 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E055-H3K36ME3_subsample-7.5e6.cc.plot.pdf

./E055-H3K36ME3_subsample-7.5e6.cc.plot.pdf

./E055-H3K36ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E055-H3K36ME3_subsample-7.5e6.tagAlign.gz 14999878 195 0.195002673413492 35 0.1951286 1500 0.1884966 1.034515 0.981014 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E055-H3K4ME1_merged.cc.plot.pdf

./E055-H3K4ME1_merged.cc.plot.pdf

./E055-H3K4ME1_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E055-H3K4ME1_merged.tagAlign.gz 77275939 180 0.56146214347495 35 0.555396 1500 0.526048 1.067321 1.206697 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E055-H3K4ME1_subsample-0.1e6.cc.plot.pdf

./E055-H3K4ME1_subsample-0.1e6.cc.plot.pdf

./E055-H3K4ME1_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E055-H3K4ME1_subsample-0.1e6.tagAlign.gz 199996 155 0.00351566418063817 30 0.003317426 1500 0.003204768 1.09701 2.759651 2 E055-H3K4ME1_subsample-0.1e6.tagAlign.gz 199998 55 0.00349215540698073 40 0.003349325 1500 0.003342614 1.044738 22.28252 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E055-H3K4ME1_subsample-0.25e6.cc.plot.pdf

./E055-H3K4ME1_subsample-0.25e6.cc.plot.pdf

./E055-H3K4ME1_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E055-H3K4ME1_subsample-0.25e6.tagAlign.gz 499996 145 0.00827052233927106 40 0.008123595 1500 0.007607953 1.087089 1.28494 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E055-H3K4ME1_subsample-0.5e6.cc.plot.pdf

./E055-H3K4ME1_subsample-0.5e6.cc.plot.pdf

./E055-H3K4ME1_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E055-H3K4ME1_subsample-0.5e6.tagAlign.gz 999992 240 0.0161946799100308 40 0.015962 1500 0.01515547 1.06857 1.288496 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E055-H3K4ME1_subsample-10e6.cc.plot.pdf

./E055-H3K4ME1_subsample-10e6.cc.plot.pdf

./E055-H3K4ME1_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E055-H3K4ME1_subsample-10e6.tagAlign.gz 19999823 195 0.246766408808545 35 0.2440467 1500 0.231192 1.067366 1.211573 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E055-H3K4ME1_subsample-1e6.cc.plot.pdf

./E055-H3K4ME1_subsample-1e6.cc.plot.pdf

./E055-H3K4ME1_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E055-H3K4ME1_subsample-1e6.tagAlign.gz 1999981 145 0.0317778048024901 35 0.03145586 1500 0.02977668 1.067204 1.191729 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E055-H3K4ME1_subsample-2.5e6.cc.plot.pdf

./E055-H3K4ME1_subsample-2.5e6.cc.plot.pdf

./E055-H3K4ME1_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E055-H3K4ME1_subsample-2.5e6.tagAlign.gz 4999964 190 0.0756630956431629 35 0.07485127 1500 0.07087514 1.067555 1.204174 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E055-H3K4ME1_subsample-20e6.cc.plot.pdf

./E055-H3K4ME1_subsample-20e6.cc.plot.pdf

./E055-H3K4ME1_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E055-H3K4ME1_subsample-20e6.tagAlign.gz 39999631 180 0.396516001975582 35 0.3922232 1500 0.3715282 1.067257 1.20743 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E055-H3K4ME1_subsample-5e6.cc.plot.pdf

./E055-H3K4ME1_subsample-5e6.cc.plot.pdf

./E055-H3K4ME1_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E055-H3K4ME1_subsample-5e6.tagAlign.gz 9999918 160 0.1406926764671 35 0.1392479 1500 0.1318799 1.066824 1.196087 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E055-H3K4ME1_subsample-7.5e6.cc.plot.pdf

./E055-H3K4ME1_subsample-7.5e6.cc.plot.pdf

./E055-H3K4ME1_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E055-H3K4ME1_subsample-7.5e6.tagAlign.gz 14999844 170 0.197172734894985 35 0.1950838 1500 0.1847602 1.067182 1.202343 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E055-H3K4ME3_merged.cc.plot.pdf

./E055-H3K4ME3_merged.cc.plot.pdf

./E055-H3K4ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E055-H3K4ME3_merged.tagAlign.gz 42330252 160 0.662557283060576 40 0.6327237 1500 0.3938118 1.682421 1.124873 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E055-H3K4ME3_subsample-0.1e6.cc.plot.pdf

./E055-H3K4ME3_subsample-0.1e6.cc.plot.pdf

./E055-H3K4ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E055-H3K4ME3_subsample-0.1e6.tagAlign.gz 199994 150 0.00870930081021886 30 0.008144594 1500 0.005116795 1.702101 1.186507 1 E055-H3K4ME3_subsample-0.1e6.tagAlign.gz 199982 175 0.00856879717050553 35 0.008003031 1500 0.005194001 1.649749 1.20141 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E055-H3K4ME3_subsample-0.25e6.cc.plot.pdf

./E055-H3K4ME3_subsample-0.25e6.cc.plot.pdf

./E055-H3K4ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E055-H3K4ME3_subsample-0.25e6.tagAlign.gz 499970 135 0.0204003914690359 35 0.01920428 1500 0.01203802 1.694663 1.166909 1 E055-H3K4ME3_subsample-0.25e6.tagAlign.gz 499979 150 0.0205206534261763 40 0.01912331 1500 0.01189931 1.724525 1.193431 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E055-H3K4ME3_subsample-0.5e6.cc.plot.pdf

./E055-H3K4ME3_subsample-0.5e6.cc.plot.pdf

./E055-H3K4ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E055-H3K4ME3_subsample-0.5e6.tagAlign.gz 999965 185 0.0397978407749359 40 0.0377254 1500 0.02328915 1.708858 1.143558 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E055-H3K4ME3_subsample-10e6.cc.plot.pdf

./E055-H3K4ME3_subsample-10e6.cc.plot.pdf

./E055-H3K4ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E055-H3K4ME3_subsample-10e6.tagAlign.gz 19999188 160 0.461904235465506 40 0.4411802 1500 0.2752407 1.678183 1.124889 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E055-H3K4ME3_subsample-1e6.cc.plot.pdf

./E055-H3K4ME3_subsample-1e6.cc.plot.pdf

./E055-H3K4ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E055-H3K4ME3_subsample-1e6.tagAlign.gz 1999915 175 0.0761102160099297 35 0.07228297 1500 0.04508345 1.688207 1.14071 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E055-H3K4ME3_subsample-2.5e6.cc.plot.pdf

./E055-H3K4ME3_subsample-2.5e6.cc.plot.pdf

./E055-H3K4ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E055-H3K4ME3_subsample-2.5e6.tagAlign.gz 4999791 160 0.170832217380821 40 0.1627812 1500 0.102429 1.667811 1.133401 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E055-H3K4ME3_subsample-20e6.cc.plot.pdf

./E055-H3K4ME3_subsample-20e6.cc.plot.pdf

./E055-H3K4ME3_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E055-H3K4ME3_subsample-20e6.tagAlign.gz 39998372 160 0.647783458404843 40 0.6186548 1500 0.385118 1.682039 1.124728 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E055-H3K4ME3_subsample-5e6.cc.plot.pdf

./E055-H3K4ME3_subsample-5e6.cc.plot.pdf

./E055-H3K4ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E055-H3K4ME3_subsample-5e6.tagAlign.gz 9999606 160 0.294279145603268 40 0.2811255 1500 0.1757103 1.674797 1.12478 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E055-H3K4ME3_subsample-7.5e6.cc.plot.pdf

./E055-H3K4ME3_subsample-7.5e6.cc.plot.pdf

./E055-H3K4ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E055-H3K4ME3_subsample-7.5e6.tagAlign.gz 14999358 165 0.388028651363053 40 0.3709197 1500 0.2314172 1.676749 1.122643 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E055-H3K9ME3_merged.cc.plot.pdf

./E055-H3K9ME3_merged.cc.plot.pdf

./E055-H3K9ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E055-H3K9ME3_merged.tagAlign.gz 32464149 135 0.33392311948785 35 0.3306356 1500 0.3159547 1.05687 1.223929 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E055-H3K9ME3_subsample-0.1e6.cc.plot.pdf

./E055-H3K9ME3_subsample-0.1e6.cc.plot.pdf

./E055-H3K9ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E055-H3K9ME3_subsample-0.1e6.tagAlign.gz 199992 175 0.00336689849815177 30 0.003242581 1500 0.003094864 1.087899 1.84159 2 E055-H3K9ME3_subsample-0.1e6.tagAlign.gz 199991 200 0.00330636534574614 30 0.003152712 1500 0.003103809 1.06526 4.141986 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E055-H3K9ME3_subsample-0.25e6.cc.plot.pdf

./E055-H3K9ME3_subsample-0.25e6.cc.plot.pdf

./E055-H3K9ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E055-H3K9ME3_subsample-0.25e6.tagAlign.gz 499979 145 0.00783353593375229 35 0.007544384 1500 0.007183142 1.090545 1.80044 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E055-H3K9ME3_subsample-0.5e6.cc.plot.pdf

./E055-H3K9ME3_subsample-0.5e6.cc.plot.pdf

./E055-H3K9ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E055-H3K9ME3_subsample-0.5e6.tagAlign.gz 999957 160 0.0152941460782418 40 0.01506006 1500 0.01434128 1.066443 1.325666 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E055-H3K9ME3_subsample-10e6.cc.plot.pdf

./E055-H3K9ME3_subsample-10e6.cc.plot.pdf

./E055-H3K9ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E055-H3K9ME3_subsample-10e6.tagAlign.gz 19999214 140 0.235887607871471 35 0.2336092 1500 0.2231943 1.056871 1.218766 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E055-H3K9ME3_subsample-1e6.cc.plot.pdf

./E055-H3K9ME3_subsample-1e6.cc.plot.pdf

./E055-H3K9ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E055-H3K9ME3_subsample-1e6.tagAlign.gz 1999911 140 0.0300402620719019 35 0.02968514 1500 0.02838983 1.058134 1.274163 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E055-H3K9ME3_subsample-2.5e6.cc.plot.pdf

./E055-H3K9ME3_subsample-2.5e6.cc.plot.pdf

./E055-H3K9ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E055-H3K9ME3_subsample-2.5e6.tagAlign.gz 4999810 145 0.0717834625342615 40 0.0710174 1500 0.06782779 1.058319 1.240175 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E055-H3K9ME3_subsample-5e6.cc.plot.pdf

./E055-H3K9ME3_subsample-5e6.cc.plot.pdf

./E055-H3K9ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E055-H3K9ME3_subsample-5e6.tagAlign.gz 9999594 150 0.133820761998393 35 0.1324453 1500 0.1265211 1.057695 1.232184 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E055-H3K9ME3_subsample-7.5e6.cc.plot.pdf

./E055-H3K9ME3_subsample-7.5e6.cc.plot.pdf

./E055-H3K9ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E055-H3K9ME3_subsample-7.5e6.tagAlign.gz 14999424 135 0.188163524019788 35 0.1861824 1500 0.1778778 1.057825 1.238564 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E056-H3K27AC_merged.cc.plot.pdf

./E056-H3K27AC_merged.cc.plot.pdf

./E056-H3K27AC_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E056-H3K27AC_merged.tagAlign.gz 28345699 155 0.340188218800696 35 0.307909 1500 0.2866218 1.186889 2.516369 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E056-H3K27AC_subsample-0.1e6.cc.plot.pdf

./E056-H3K27AC_subsample-0.1e6.cc.plot.pdf

./E056-H3K27AC_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E056-H3K27AC_subsample-0.1e6.tagAlign.gz 199965 175 0.00376544969445423 35 0.003349897 1500 0.00318796 1.181147 3.566139 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E056-H3K27AC_subsample-0.25e6.cc.plot.pdf

./E056-H3K27AC_subsample-0.25e6.cc.plot.pdf

./E056-H3K27AC_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E056-H3K27AC_subsample-0.25e6.tagAlign.gz 499894 160 0.00908917697250705 35 0.00814538 1500 0.007613864 1.193767 2.775671 2 E056-H3K27AC_subsample-0.25e6.tagAlign.gz 499893 185 0.00894039568613152 30 0.007889228 1500 0.00754015 1.185705 4.01127 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E056-H3K27AC_subsample-0.5e6.cc.plot.pdf

./E056-H3K27AC_subsample-0.5e6.cc.plot.pdf

./E056-H3K27AC_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E056-H3K27AC_subsample-0.5e6.tagAlign.gz 999805 155 0.0176422216782386 40 0.01593652 1500 0.01478881 1.192944 2.486188 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E056-H3K27AC_subsample-10e6.cc.plot.pdf

./E056-H3K27AC_subsample-10e6.cc.plot.pdf

./E056-H3K27AC_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E056-H3K27AC_subsample-10e6.tagAlign.gz 19996092 155 0.265289349037141 35 0.2402454 1500 0.2236866 1.185987 2.51243 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E056-H3K27AC_subsample-1e6.cc.plot.pdf

./E056-H3K27AC_subsample-1e6.cc.plot.pdf

./E056-H3K27AC_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E056-H3K27AC_subsample-1e6.tagAlign.gz 1999588 160 0.0346264047801109 40 0.031232 1500 0.02909818 1.189985 2.590764 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E056-H3K27AC_subsample-2.5e6.cc.plot.pdf

./E056-H3K27AC_subsample-2.5e6.cc.plot.pdf

./E056-H3K27AC_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E056-H3K27AC_subsample-2.5e6.tagAlign.gz 4999000 160 0.0820017264209127 35 0.07430409 1500 0.06913932 1.186036 2.490415 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E056-H3K27AC_subsample-5e6.cc.plot.pdf

./E056-H3K27AC_subsample-5e6.cc.plot.pdf

./E056-H3K27AC_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E056-H3K27AC_subsample-5e6.tagAlign.gz 9998014 155 0.15205583919329 40 0.1376977 1500 0.1281701 1.18636 2.507008 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E056-H3K27AC_subsample-7.5e6.cc.plot.pdf

./E056-H3K27AC_subsample-7.5e6.cc.plot.pdf

./E056-H3K27AC_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E056-H3K27AC_subsample-7.5e6.tagAlign.gz 14997060 160 0.212554934457681 35 0.1925048 1500 0.1791391 1.186536 2.500125 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E056-H3K27ME3_merged.cc.plot.pdf

./E056-H3K27ME3_merged.cc.plot.pdf

./E056-H3K27ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E056-H3K27ME3_merged.tagAlign.gz 70832210 175 0.520623974409629 35 0.51847 1500 0.5069136 1.027047 1.186389 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E056-H3K27ME3_subsample-0.1e6.cc.plot.pdf

./E056-H3K27ME3_subsample-0.1e6.cc.plot.pdf

./E056-H3K27ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E056-H3K27ME3_subsample-0.1e6.tagAlign.gz 199998 135 0.0033626316836148 35 0.003225976 1500 0.003169101 1.061068 3.40277 2 E056-H3K27ME3_subsample-0.1e6.tagAlign.gz 199996 120 0.00337647226462895 40 0.003204457 1500 0.003150156 1.071843 4.167818 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E056-H3K27ME3_subsample-0.25e6.cc.plot.pdf

./E056-H3K27ME3_subsample-0.25e6.cc.plot.pdf

./E056-H3K27ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E056-H3K27ME3_subsample-0.25e6.tagAlign.gz 499993 160 0.00783432083080187 30 0.007687546 1500 0.007481119 1.047212 1.711026 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E056-H3K27ME3_subsample-0.5e6.cc.plot.pdf

./E056-H3K27ME3_subsample-0.5e6.cc.plot.pdf

./E056-H3K27ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E056-H3K27ME3_subsample-0.5e6.tagAlign.gz 999977 210 0.0153853280848697 35 0.0151842 1500 0.01486152 1.035246 1.62331 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E056-H3K27ME3_subsample-10e6.cc.plot.pdf

./E056-H3K27ME3_subsample-10e6.cc.plot.pdf

./E056-H3K27ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E056-H3K27ME3_subsample-10e6.tagAlign.gz 19999582 175 0.235007784158927 35 0.2338693 1500 0.2287929 1.027164 1.224265 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E056-H3K27ME3_subsample-1e6.cc.plot.pdf

./E056-H3K27ME3_subsample-1e6.cc.plot.pdf

./E056-H3K27ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E056-H3K27ME3_subsample-1e6.tagAlign.gz 1999959 165 0.0300624899429851 35 0.02989925 1500 0.02920676 1.029299 1.235722 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E056-H3K27ME3_subsample-2.5e6.cc.plot.pdf

./E056-H3K27ME3_subsample-2.5e6.cc.plot.pdf

./E056-H3K27ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E056-H3K27ME3_subsample-2.5e6.tagAlign.gz 4999913 165 0.0715842351501389 35 0.07127656 1500 0.06967606 1.027386 1.192236 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E056-H3K27ME3_subsample-20e6.cc.plot.pdf

./E056-H3K27ME3_subsample-20e6.cc.plot.pdf

./E056-H3K27ME3_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E056-H3K27ME3_subsample-20e6.tagAlign.gz 39999183 175 0.380049901964072 35 0.3784692 1500 0.3700398 1.027051 1.187525 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E056-H3K27ME3_subsample-5e6.cc.plot.pdf

./E056-H3K27ME3_subsample-5e6.cc.plot.pdf

./E056-H3K27ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E056-H3K27ME3_subsample-5e6.tagAlign.gz 9999766 185 0.133413891432752 35 0.1328772 1500 0.1298878 1.027147 1.179543 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E056-H3K27ME3_subsample-7.5e6.cc.plot.pdf

./E056-H3K27ME3_subsample-7.5e6.cc.plot.pdf

./E056-H3K27ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E056-H3K27ME3_subsample-7.5e6.tagAlign.gz 14999702 180 0.187428808956304 35 0.186549 1500 0.1824747 1.02715 1.215944 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E056-H3K36ME3_merged.cc.plot.pdf

./E056-H3K36ME3_merged.cc.plot.pdf

./E056-H3K36ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E056-H3K36ME3_merged.tagAlign.gz 60065176 135 0.487457527388466 35 0.4856432 1500 0.4705531 1.035925 1.120236 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E056-H3K36ME3_subsample-0.1e6.cc.plot.pdf

./E056-H3K36ME3_subsample-0.1e6.cc.plot.pdf

./E056-H3K36ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E056-H3K36ME3_subsample-0.1e6.tagAlign.gz 199996 -255 0.00355125614878676 30 0.003473642 1500 0.003282521 1.081868 1.406102 1 E056-H3K36ME3_subsample-0.1e6.tagAlign.gz 199993 230 0.00349377084499118 30 0.003410979 1500 0.003341764 1.045487 2.196157 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E056-H3K36ME3_subsample-0.25e6.cc.plot.pdf

./E056-H3K36ME3_subsample-0.25e6.cc.plot.pdf

./E056-H3K36ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E056-H3K36ME3_subsample-0.25e6.tagAlign.gz 499986 150 0.00815396774375078 30 0.008046178 1500 0.007702047 1.058675 1.313225 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E056-H3K36ME3_subsample-0.5e6.cc.plot.pdf

./E056-H3K36ME3_subsample-0.5e6.cc.plot.pdf

./E056-H3K36ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E056-H3K36ME3_subsample-0.5e6.tagAlign.gz 999969 205 0.0159974947557536 40 0.01605304 1500 0.01537875 1.040234 0.9176224 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E056-H3K36ME3_subsample-10e6.cc.plot.pdf

./E056-H3K36ME3_subsample-10e6.cc.plot.pdf

./E056-H3K36ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E056-H3K36ME3_subsample-10e6.tagAlign.gz 19999545 135 0.242189683240919 35 0.241217 1500 0.2336593 1.036508 1.128701 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E056-H3K36ME3_subsample-1e6.cc.plot.pdf

./E056-H3K36ME3_subsample-1e6.cc.plot.pdf

./E056-H3K36ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E056-H3K36ME3_subsample-1e6.tagAlign.gz 1999955 135 0.0314345009017123 40 0.03122065 1500 0.03023023 1.039836 1.215921 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E056-H3K36ME3_subsample-2.5e6.cc.plot.pdf

./E056-H3K36ME3_subsample-2.5e6.cc.plot.pdf

./E056-H3K36ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E056-H3K36ME3_subsample-2.5e6.tagAlign.gz 4999893 125 0.0746602499450483 35 0.07445875 1500 0.07201732 1.036698 1.082532 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E056-H3K36ME3_subsample-20e6.cc.plot.pdf

./E056-H3K36ME3_subsample-20e6.cc.plot.pdf

./E056-H3K36ME3_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E056-H3K36ME3_subsample-20e6.tagAlign.gz 39999076 140 0.388277857032264 35 0.3868357 1500 0.3748241 1.035893 1.120063 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E056-H3K36ME3_subsample-5e6.cc.plot.pdf

./E056-H3K36ME3_subsample-5e6.cc.plot.pdf

./E056-H3K36ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E056-H3K36ME3_subsample-5e6.tagAlign.gz 9999774 135 0.138470719961977 35 0.1378944 1500 0.1335406 1.036919 1.13236 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E056-H3K36ME3_subsample-7.5e6.cc.plot.pdf

./E056-H3K36ME3_subsample-7.5e6.cc.plot.pdf

./E056-H3K36ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E056-H3K36ME3_subsample-7.5e6.tagAlign.gz 14999641 150 0.193625628732387 35 0.1929127 1500 0.1868417 1.036308 1.117424 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E056-H3K4ME1_merged.cc.plot.pdf

./E056-H3K4ME1_merged.cc.plot.pdf

./E056-H3K4ME1_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E056-H3K4ME1_merged.tagAlign.gz 65738458 180 0.502613637791459 35 0.5007029 1500 0.4862199 1.033717 1.131931 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E056-H3K4ME1_subsample-0.1e6.cc.plot.pdf

./E056-H3K4ME1_subsample-0.1e6.cc.plot.pdf

./E056-H3K4ME1_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E056-H3K4ME1_subsample-0.1e6.tagAlign.gz 199996 1485 0.00338105812368111 40 0.003195229 1500 0.003250931 1.040028 -2.33613 NA E056-H3K4ME1_subsample-0.1e6.tagAlign.gz 199999 -310 0.00335490306678037 30 0.003258669 1500 0.003170072 1.058305 2.086211 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E056-H3K4ME1_subsample-0.25e6.cc.plot.pdf

./E056-H3K4ME1_subsample-0.25e6.cc.plot.pdf

./E056-H3K4ME1_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E056-H3K4ME1_subsample-0.25e6.tagAlign.gz 499995 220 0.00775462247623058 40 0.007585705 1500 0.007439337 1.042381 2.154064 2 E056-H3K4ME1_subsample-0.25e6.tagAlign.gz 499996 420 0.00778875124401175 40 0.007675085 1500 0.007403743 1.052002 1.418901 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E056-H3K4ME1_subsample-0.5e6.cc.plot.pdf

./E056-H3K4ME1_subsample-0.5e6.cc.plot.pdf

./E056-H3K4ME1_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E056-H3K4ME1_subsample-0.5e6.tagAlign.gz 999989 145 0.0152890765551804 35 0.01515511 1500 0.01467492 1.041851 1.27899 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E056-H3K4ME1_subsample-10e6.cc.plot.pdf

./E056-H3K4ME1_subsample-10e6.cc.plot.pdf

./E056-H3K4ME1_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E056-H3K4ME1_subsample-10e6.tagAlign.gz 19999744 180 0.234858873407178 35 0.2339279 1500 0.2271895 1.033758 1.138162 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E056-H3K4ME1_subsample-1e6.cc.plot.pdf

./E056-H3K4ME1_subsample-1e6.cc.plot.pdf

./E056-H3K4ME1_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E056-H3K4ME1_subsample-1e6.tagAlign.gz 1999978 160 0.0299747921727891 40 0.02985141 1500 0.02879753 1.040881 1.117073 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E056-H3K4ME1_subsample-2.5e6.cc.plot.pdf

./E056-H3K4ME1_subsample-2.5e6.cc.plot.pdf

./E056-H3K4ME1_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E056-H3K4ME1_subsample-2.5e6.tagAlign.gz 4999951 165 0.0714582193477621 35 0.07111687 1500 0.06905946 1.034735 1.165912 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E056-H3K4ME1_subsample-20e6.cc.plot.pdf

./E056-H3K4ME1_subsample-20e6.cc.plot.pdf

./E056-H3K4ME1_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E056-H3K4ME1_subsample-20e6.tagAlign.gz 39999535 180 0.380301680541834 35 0.3789246 1500 0.3679262 1.033636 1.125204 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E056-H3K4ME1_subsample-5e6.cc.plot.pdf

./E056-H3K4ME1_subsample-5e6.cc.plot.pdf

./E056-H3K4ME1_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E056-H3K4ME1_subsample-5e6.tagAlign.gz 9999896 180 0.133222328095969 40 0.132704 1500 0.128925 1.033332 1.137158 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E056-H3K4ME1_subsample-7.5e6.cc.plot.pdf

./E056-H3K4ME1_subsample-7.5e6.cc.plot.pdf

./E056-H3K4ME1_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E056-H3K4ME1_subsample-7.5e6.tagAlign.gz 14999845 180 0.187265502202545 35 0.1865026 1500 0.1811217 1.033921 1.141781 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E056-H3K4ME3_merged.cc.plot.pdf

./E056-H3K4ME3_merged.cc.plot.pdf

./E056-H3K4ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E056-H3K4ME3_merged.tagAlign.gz 46705271 160 0.628963602499181 40 0.5973852 1500 0.3966668 1.585622 1.157327 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E056-H3K4ME3_subsample-0.1e6.cc.plot.pdf

./E056-H3K4ME3_subsample-0.1e6.cc.plot.pdf

./E056-H3K4ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E056-H3K4ME3_subsample-0.1e6.tagAlign.gz 199989 180 0.00687660471907211 35 0.006349552 1500 0.004102879 1.676044 1.234593 1 E056-H3K4ME3_subsample-0.1e6.tagAlign.gz 199987 210 0.00677161675975315 30 0.006254369 1500 0.004232759 1.599812 1.255859 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E056-H3K4ME3_subsample-0.25e6.cc.plot.pdf

./E056-H3K4ME3_subsample-0.25e6.cc.plot.pdf

./E056-H3K4ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E056-H3K4ME3_subsample-0.25e6.tagAlign.gz 499965 150 0.0161017436331994 30 0.01524093 1500 0.0101635 1.584272 1.169538 1 E056-H3K4ME3_subsample-0.25e6.tagAlign.gz 499969 170 0.0160199390453094 35 0.01540129 1500 0.01019574 1.571238 1.118845 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E056-H3K4ME3_subsample-0.5e6.cc.plot.pdf

./E056-H3K4ME3_subsample-0.5e6.cc.plot.pdf

./E056-H3K4ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E056-H3K4ME3_subsample-0.5e6.tagAlign.gz 999946 145 0.0317195551681249 40 0.0301574 1500 0.02008329 1.5794 1.155067 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E056-H3K4ME3_subsample-10e6.cc.plot.pdf

./E056-H3K4ME3_subsample-10e6.cc.plot.pdf

./E056-H3K4ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E056-H3K4ME3_subsample-10e6.tagAlign.gz 19998825 165 0.402455177929942 40 0.3823903 1500 0.2545781 1.580871 1.156987 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E056-H3K4ME3_subsample-1e6.cc.plot.pdf

./E056-H3K4ME3_subsample-1e6.cc.plot.pdf

./E056-H3K4ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E056-H3K4ME3_subsample-1e6.tagAlign.gz 1999858 155 0.0612551192717431 40 0.05824649 1500 0.03897403 1.571691 1.15611 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E056-H3K4ME3_subsample-2.5e6.cc.plot.pdf

./E056-H3K4ME3_subsample-2.5e6.cc.plot.pdf

./E056-H3K4ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E056-H3K4ME3_subsample-2.5e6.tagAlign.gz 4999675 165 0.140457891163812 35 0.1330804 1500 0.08908998 1.576585 1.167707 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E056-H3K4ME3_subsample-20e6.cc.plot.pdf

./E056-H3K4ME3_subsample-20e6.cc.plot.pdf

./E056-H3K4ME3_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E056-H3K4ME3_subsample-20e6.tagAlign.gz 39997627 160 0.587173298153848 40 0.5577289 1500 0.3705671 1.584526 1.157321 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E056-H3K4ME3_subsample-5e6.cc.plot.pdf

./E056-H3K4ME3_subsample-5e6.cc.plot.pdf

./E056-H3K4ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E056-H3K4ME3_subsample-5e6.tagAlign.gz 9999371 165 0.247677517033231 40 0.2354579 1500 0.1571094 1.576465 1.155964 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E056-H3K4ME3_subsample-7.5e6.cc.plot.pdf

./E056-H3K4ME3_subsample-7.5e6.cc.plot.pdf

./E056-H3K4ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E056-H3K4ME3_subsample-7.5e6.tagAlign.gz 14999120 160 0.332781877254937 40 0.316112 1500 0.2110288 1.57695 1.158635 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E056-H3K9ME3_merged.cc.plot.pdf

./E056-H3K9ME3_merged.cc.plot.pdf

./E056-H3K9ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E056-H3K9ME3_merged.tagAlign.gz 47506083 185 0.411458156598979 35 0.4119158 1500 0.4007478 1.026726 0.9590197 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E056-H3K9ME3_subsample-0.1e6.cc.plot.pdf

./E056-H3K9ME3_subsample-0.1e6.cc.plot.pdf

./E056-H3K9ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E056-H3K9ME3_subsample-0.1e6.tagAlign.gz 199994 1430 0.0032642329857602 35 0.003122082 1500 0.003100081 1.052951 7.461115 2 E056-H3K9ME3_subsample-0.1e6.tagAlign.gz 199998 795 0.00325478450580622 30 0.003166716 1500 0.003135445 1.038061 3.816306 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E056-H3K9ME3_subsample-0.25e6.cc.plot.pdf

./E056-H3K9ME3_subsample-0.25e6.cc.plot.pdf

./E056-H3K9ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E056-H3K9ME3_subsample-0.25e6.tagAlign.gz 499994 185 0.00750568565845592 35 0.007478075 1500 0.007140452 1.05115 1.081778 1 E056-H3K9ME3_subsample-0.25e6.tagAlign.gz 499994 175 0.00752725563848134 40 0.007396905 1500 0.007150133 1.052743 1.528222 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E056-H3K9ME3_subsample-0.5e6.cc.plot.pdf

./E056-H3K9ME3_subsample-0.5e6.cc.plot.pdf

./E056-H3K9ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E056-H3K9ME3_subsample-0.5e6.tagAlign.gz 999979 225 0.0147521292140417 40 0.01463592 1500 0.01412544 1.044366 1.227646 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E056-H3K9ME3_subsample-10e6.cc.plot.pdf

./E056-H3K9ME3_subsample-10e6.cc.plot.pdf

./E056-H3K9ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E056-H3K9ME3_subsample-10e6.tagAlign.gz 19999654 175 0.227730987096724 35 0.2278744 1500 0.2217434 1.027002 0.9766056 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E056-H3K9ME3_subsample-1e6.cc.plot.pdf

./E056-H3K9ME3_subsample-1e6.cc.plot.pdf

./E056-H3K9ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E056-H3K9ME3_subsample-1e6.tagAlign.gz 1999967 175 0.0288086666369731 40 0.02883447 1500 0.02792369 1.031693 0.971666 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E056-H3K9ME3_subsample-2.5e6.cc.plot.pdf

./E056-H3K9ME3_subsample-2.5e6.cc.plot.pdf

./E056-H3K9ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E056-H3K9ME3_subsample-2.5e6.tagAlign.gz 4999918 180 0.0688594437224918 35 0.06885881 1500 0.0670002 1.02775 1.000343 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E056-H3K9ME3_subsample-20e6.cc.plot.pdf

./E056-H3K9ME3_subsample-20e6.cc.plot.pdf

./E056-H3K9ME3_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E056-H3K9ME3_subsample-20e6.tagAlign.gz 39999312 185 0.370587184792928 35 0.3709543 1500 0.3609615 1.026667 0.9632584 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E056-H3K9ME3_subsample-5e6.cc.plot.pdf

./E056-H3K9ME3_subsample-5e6.cc.plot.pdf

./E056-H3K9ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E056-H3K9ME3_subsample-5e6.tagAlign.gz 9999826 185 0.128708230595574 40 0.1286732 1500 0.1252735 1.027418 1.010293 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E056-H3K9ME3_subsample-7.5e6.cc.plot.pdf

./E056-H3K9ME3_subsample-7.5e6.cc.plot.pdf

./E056-H3K9ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E056-H3K9ME3_subsample-7.5e6.tagAlign.gz 14999734 170 0.181162889638056 35 0.1813236 1500 0.1764183 1.026894 0.9672336 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E058-H3K27AC_merged.cc.plot.pdf

./E058-H3K27AC_merged.cc.plot.pdf

./E058-H3K27AC_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E058-H3K27AC_merged.tagAlign.gz 66279873 190 0.533895981632672 35 0.5131341 1500 0.4799655 1.112363 1.625951 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E058-H3K27AC_subsample-0.1e6.cc.plot.pdf

./E058-H3K27AC_subsample-0.1e6.cc.plot.pdf

./E058-H3K27AC_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E058-H3K27AC_subsample-0.1e6.tagAlign.gz 199989 200 0.00355396932587335 35 0.003330494 1500 0.003066928 1.158804 1.847893 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E058-H3K27AC_subsample-0.25e6.cc.plot.pdf

./E058-H3K27AC_subsample-0.25e6.cc.plot.pdf

./E058-H3K27AC_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E058-H3K27AC_subsample-0.25e6.tagAlign.gz 499967 180 0.00839507022653582 30 0.00798883 1500 0.00733978 1.143777 1.625901 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E058-H3K27AC_subsample-0.5e6.cc.plot.pdf

./E058-H3K27AC_subsample-0.5e6.cc.plot.pdf

./E058-H3K27AC_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E058-H3K27AC_subsample-0.5e6.tagAlign.gz 999940 170 0.0164433683223 35 0.01570869 1500 0.01465468 1.122056 1.697027 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E058-H3K27AC_subsample-10e6.cc.plot.pdf

./E058-H3K27AC_subsample-10e6.cc.plot.pdf

./E058-H3K27AC_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E058-H3K27AC_subsample-10e6.tagAlign.gz 19998952 185 0.251357901588539 35 0.2417001 1500 0.2259574 1.112413 1.613483 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E058-H3K27AC_subsample-1e6.cc.plot.pdf

./E058-H3K27AC_subsample-1e6.cc.plot.pdf

./E058-H3K27AC_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E058-H3K27AC_subsample-1e6.tagAlign.gz 1999894 180 0.0323558257694842 40 0.0309488 1500 0.02894335 1.117902 1.701602 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E058-H3K27AC_subsample-2.5e6.cc.plot.pdf

./E058-H3K27AC_subsample-2.5e6.cc.plot.pdf

./E058-H3K27AC_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E058-H3K27AC_subsample-2.5e6.tagAlign.gz 4999729 190 0.0769565757899439 35 0.07392171 1500 0.0691769 1.112461 1.639619 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E058-H3K27AC_subsample-5e6.cc.plot.pdf

./E058-H3K27AC_subsample-5e6.cc.plot.pdf

./E058-H3K27AC_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E058-H3K27AC_subsample-5e6.tagAlign.gz 9999481 195 0.143110791412279 40 0.1374534 1500 0.1285256 1.11348 1.633683 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E058-H3K27AC_subsample-7.5e6.cc.plot.pdf

./E058-H3K27AC_subsample-7.5e6.cc.plot.pdf

./E058-H3K27AC_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E058-H3K27AC_subsample-7.5e6.tagAlign.gz 14999213 180 0.200721232048909 35 0.19295 1500 0.1803545 1.112926 1.616988 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E058-H3K27ME3_merged.cc.plot.pdf

./E058-H3K27ME3_merged.cc.plot.pdf

./E058-H3K27ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E058-H3K27ME3_merged.tagAlign.gz 56015602 185 0.480881286187203 35 0.4655552 1500 0.452879 1.061832 2.20904 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E058-H3K27ME3_subsample-0.1e6.cc.plot.pdf

./E058-H3K27ME3_subsample-0.1e6.cc.plot.pdf

./E058-H3K27ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E058-H3K27ME3_subsample-0.1e6.tagAlign.gz 199970 255 0.00338898126958414 30 0.003224512 1500 0.003158195 1.073075 3.480046 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E058-H3K27ME3_subsample-0.25e6.cc.plot.pdf

./E058-H3K27ME3_subsample-0.25e6.cc.plot.pdf

./E058-H3K27ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E058-H3K27ME3_subsample-0.25e6.tagAlign.gz 499939 170 0.00806550119330371 40 0.007708394 1500 0.00748235 1.077937 2.579811 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E058-H3K27ME3_subsample-0.5e6.cc.plot.pdf

./E058-H3K27ME3_subsample-0.5e6.cc.plot.pdf

./E058-H3K27ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E058-H3K27ME3_subsample-0.5e6.tagAlign.gz 999868 170 0.015919250480269 30 0.01541375 1500 0.01504897 1.05783 2.38579 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E058-H3K27ME3_subsample-10e6.cc.plot.pdf

./E058-H3K27ME3_subsample-10e6.cc.plot.pdf

./E058-H3K27ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E058-H3K27ME3_subsample-10e6.tagAlign.gz 19997648 180 0.245066051105701 35 0.2372789 1500 0.2308047 1.06179 2.202795 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E058-H3K27ME3_subsample-1e6.cc.plot.pdf

./E058-H3K27ME3_subsample-1e6.cc.plot.pdf

./E058-H3K27ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E058-H3K27ME3_subsample-1e6.tagAlign.gz 1999762 170 0.0313041387811888 30 0.03025473 1500 0.02941148 1.064351 2.244472 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E058-H3K27ME3_subsample-2.5e6.cc.plot.pdf

./E058-H3K27ME3_subsample-2.5e6.cc.plot.pdf

./E058-H3K27ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E058-H3K27ME3_subsample-2.5e6.tagAlign.gz 4999424 185 0.0747119210908238 30 0.07223508 1500 0.07023177 1.063791 2.23637 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E058-H3K27ME3_subsample-5e6.cc.plot.pdf

./E058-H3K27ME3_subsample-5e6.cc.plot.pdf

./E058-H3K27ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E058-H3K27ME3_subsample-5e6.tagAlign.gz 9998822 185 0.139081319394425 35 0.1346959 1500 0.1308926 1.062561 2.153057 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E058-H3K27ME3_subsample-7.5e6.cc.plot.pdf

./E058-H3K27ME3_subsample-7.5e6.cc.plot.pdf

./E058-H3K27ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E058-H3K27ME3_subsample-7.5e6.tagAlign.gz 14998233 185 0.195376767197579 35 0.1891963 1500 0.1840245 1.061689 2.195032 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E058-H3K36ME3_merged.cc.plot.pdf

./E058-H3K36ME3_merged.cc.plot.pdf

./E058-H3K36ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E058-H3K36ME3_merged.tagAlign.gz 80493268 190 0.59381455500393 35 0.5899077 1500 0.5661744 1.048819 1.164613 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E058-H3K36ME3_subsample-0.1e6.cc.plot.pdf

./E058-H3K36ME3_subsample-0.1e6.cc.plot.pdf

./E058-H3K36ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E058-H3K36ME3_subsample-0.1e6.tagAlign.gz 199985 145 0.00380342505419976 40 0.003735485 1500 0.003421778 1.111535 1.216571 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E058-H3K36ME3_subsample-0.25e6.cc.plot.pdf

./E058-H3K36ME3_subsample-0.25e6.cc.plot.pdf

./E058-H3K36ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E058-H3K36ME3_subsample-0.25e6.tagAlign.gz 499978 175 0.00918016379593471 35 0.008907535 1500 0.008506266 1.079224 1.679414 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E058-H3K36ME3_subsample-0.5e6.cc.plot.pdf

./E058-H3K36ME3_subsample-0.5e6.cc.plot.pdf

./E058-H3K36ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E058-H3K36ME3_subsample-0.5e6.tagAlign.gz 999941 145 0.017818063834448 35 0.01768569 1500 0.01701323 1.047306 1.196855 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E058-H3K36ME3_subsample-10e6.cc.plot.pdf

./E058-H3K36ME3_subsample-10e6.cc.plot.pdf

./E058-H3K36ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E058-H3K36ME3_subsample-10e6.tagAlign.gz 19999119 175 0.263672237830259 35 0.26208 1500 0.2516521 1.047765 1.152686 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E058-H3K36ME3_subsample-1e6.cc.plot.pdf

./E058-H3K36ME3_subsample-1e6.cc.plot.pdf

./E058-H3K36ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E058-H3K36ME3_subsample-1e6.tagAlign.gz 1999906 190 0.0349304445172074 35 0.03466147 1500 0.03319596 1.05225 1.18354 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E058-H3K36ME3_subsample-2.5e6.cc.plot.pdf

./E058-H3K36ME3_subsample-2.5e6.cc.plot.pdf

./E058-H3K36ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E058-H3K36ME3_subsample-2.5e6.tagAlign.gz 4999744 190 0.0826180769124418 35 0.0820789 1500 0.07867076 1.050175 1.158203 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E058-H3K36ME3_subsample-5e6.cc.plot.pdf

./E058-H3K36ME3_subsample-5e6.cc.plot.pdf

./E058-H3K36ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E058-H3K36ME3_subsample-5e6.tagAlign.gz 9999542 180 0.152203718552605 35 0.1512697 1500 0.1451252 1.048775 1.152011 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E058-H3K36ME3_subsample-7.5e6.cc.plot.pdf

./E058-H3K36ME3_subsample-7.5e6.cc.plot.pdf

./E058-H3K36ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E058-H3K36ME3_subsample-7.5e6.tagAlign.gz 14999312 200 0.211805905246843 35 0.2105364 1500 0.202035 1.048363 1.149327 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E058-H3K4ME1_merged.cc.plot.pdf

./E058-H3K4ME1_merged.cc.plot.pdf

./E058-H3K4ME1_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E058-H3K4ME1_merged.tagAlign.gz 74017285 175 0.563287593829718 35 0.5462354 1500 0.5121179 1.099918 1.499805 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E058-H3K4ME1_subsample-0.1e6.cc.plot.pdf

./E058-H3K4ME1_subsample-0.1e6.cc.plot.pdf

./E058-H3K4ME1_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E058-H3K4ME1_subsample-0.1e6.tagAlign.gz 199997 255 0.00352068907325218 40 0.003285497 1500 0.003166369 1.111901 2.97429 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E058-H3K4ME1_subsample-0.25e6.cc.plot.pdf

./E058-H3K4ME1_subsample-0.25e6.cc.plot.pdf

./E058-H3K4ME1_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E058-H3K4ME1_subsample-0.25e6.tagAlign.gz 499980 170 0.00833552398562636 40 0.008113625 1500 0.007486764 1.113368 1.353983 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E058-H3K4ME1_subsample-0.5e6.cc.plot.pdf

./E058-H3K4ME1_subsample-0.5e6.cc.plot.pdf

./E058-H3K4ME1_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E058-H3K4ME1_subsample-0.5e6.tagAlign.gz 999969 200 0.0164795585360864 40 0.01593253 1500 0.0149606 1.10153 1.562832 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E058-H3K4ME1_subsample-10e6.cc.plot.pdf

./E058-H3K4ME1_subsample-10e6.cc.plot.pdf

./E058-H3K4ME1_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E058-H3K4ME1_subsample-10e6.tagAlign.gz 19999309 175 0.252018515907429 35 0.2445677 1500 0.2292901 1.099125 1.487698 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E058-H3K4ME1_subsample-1e6.cc.plot.pdf

./E058-H3K4ME1_subsample-1e6.cc.plot.pdf

./E058-H3K4ME1_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E058-H3K4ME1_subsample-1e6.tagAlign.gz 1999927 185 0.0324501432071168 40 0.03142404 1500 0.02938645 1.104255 1.503585 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E058-H3K4ME1_subsample-2.5e6.cc.plot.pdf

./E058-H3K4ME1_subsample-2.5e6.cc.plot.pdf

./E058-H3K4ME1_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E058-H3K4ME1_subsample-2.5e6.tagAlign.gz 4999837 175 0.0772501592561142 35 0.07491065 1500 0.07030299 1.098817 1.507745 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E058-H3K4ME1_subsample-5e6.cc.plot.pdf

./E058-H3K4ME1_subsample-5e6.cc.plot.pdf

./E058-H3K4ME1_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E058-H3K4ME1_subsample-5e6.tagAlign.gz 9999659 170 0.143686985669705 35 0.1393231 1500 0.1307759 1.098727 1.51056 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E058-H3K4ME1_subsample-7.5e6.cc.plot.pdf

./E058-H3K4ME1_subsample-7.5e6.cc.plot.pdf

./E058-H3K4ME1_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E058-H3K4ME1_subsample-7.5e6.tagAlign.gz 14999469 180 0.201347566856188 35 0.1953415 1500 0.1832195 1.098942 1.49547 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E058-H3K4ME3_merged.cc.plot.pdf

./E058-H3K4ME3_merged.cc.plot.pdf

./E058-H3K4ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E058-H3K4ME3_merged.tagAlign.gz 39258227 235 0.763701145956254 40 0.6984649 1500 0.3879159 1.968729 1.210068 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E058-H3K4ME3_subsample-0.1e6.cc.plot.pdf

./E058-H3K4ME3_subsample-0.1e6.cc.plot.pdf

./E058-H3K4ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E058-H3K4ME3_subsample-0.1e6.tagAlign.gz 199989 285 0.0122814706483853 30 0.01096487 1500 0.006057475 2.02749 1.268289 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E058-H3K4ME3_subsample-0.25e6.cc.plot.pdf

./E058-H3K4ME3_subsample-0.25e6.cc.plot.pdf

./E058-H3K4ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E058-H3K4ME3_subsample-0.25e6.tagAlign.gz 499975 245 0.0296679916202461 40 0.02645791 1500 0.0146662 2.022882 1.272232 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E058-H3K4ME3_subsample-0.5e6.cc.plot.pdf

./E058-H3K4ME3_subsample-0.5e6.cc.plot.pdf

./E058-H3K4ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E058-H3K4ME3_subsample-0.5e6.tagAlign.gz 999957 230 0.0565799659352389 40 0.05136298 1500 0.02852736 1.983358 1.228458 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E058-H3K4ME3_subsample-10e6.cc.plot.pdf

./E058-H3K4ME3_subsample-10e6.cc.plot.pdf

./E058-H3K4ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E058-H3K4ME3_subsample-10e6.tagAlign.gz 19999097 235 0.57915571009149 40 0.5298411 1500 0.294642 1.965625 1.209672 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E058-H3K4ME3_subsample-1e6.cc.plot.pdf

./E058-H3K4ME3_subsample-1e6.cc.plot.pdf

./E058-H3K4ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E058-H3K4ME3_subsample-1e6.tagAlign.gz 1999928 225 0.107271767177898 35 0.09796176 1500 0.05499652 1.950519 1.216687 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E058-H3K4ME3_subsample-2.5e6.cc.plot.pdf

./E058-H3K4ME3_subsample-2.5e6.cc.plot.pdf

./E058-H3K4ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E058-H3K4ME3_subsample-2.5e6.tagAlign.gz 4999775 220 0.235324448949778 40 0.2147711 1500 0.1193176 1.972253 1.215324 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E058-H3K4ME3_subsample-5e6.cc.plot.pdf

./E058-H3K4ME3_subsample-5e6.cc.plot.pdf

./E058-H3K4ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E058-H3K4ME3_subsample-5e6.tagAlign.gz 9999510 225 0.388576911020704 40 0.3556266 1500 0.1982069 1.960462 1.209315 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E058-H3K4ME3_subsample-7.5e6.cc.plot.pdf

./E058-H3K4ME3_subsample-7.5e6.cc.plot.pdf

./E058-H3K4ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E058-H3K4ME3_subsample-7.5e6.tagAlign.gz 14999327 235 0.497799503590386 40 0.4554029 1500 0.2531254 1.966612 1.209596 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E058-H3K9ME3_merged.cc.plot.pdf

./E058-H3K9ME3_merged.cc.plot.pdf

./E058-H3K9ME3_merged.cc.plot.png

./E058-H3K9ME3_merged.cc.plot.png

./E058-H3K9ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E058-H3K9ME3_merged.tagAlign.gz 44754285 180 0.412091115376246 35 0.4014942 1500 0.3865092 1.066187 1.707165 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E058-H3K9ME3_merged.pr1.cc.plot.pdf

./E058-H3K9ME3_merged.pr1.cc.plot.pdf

./E058-H3K9ME3_merged.pr1.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E058-H3K9ME3_merged.pr1.tagAlign.gz 22377123 180 0.258502129129995 35 0.2519419 1500 0.2424971 1.066001 1.694597 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E058-H3K9ME3_merged.pr2.cc.plot.pdf

./E058-H3K9ME3_merged.pr2.cc.plot.pdf

./E058-H3K9ME3_merged.pr2.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E058-H3K9ME3_merged.pr2.tagAlign.gz 22377162 180 0.258555228852732 35 0.251927 1500 0.2425326 1.066064 1.705543 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E058-H3K9ME3_subsample-0.1e6.cc.plot.pdf

./E058-H3K9ME3_subsample-0.1e6.cc.plot.pdf

./E058-H3K9ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E058-H3K9ME3_subsample-0.1e6.tagAlign.gz 199963 310 0.00335094959655358 35 0.003159956 1500 0.003162765 1.0595 -66.99994 NA
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E058-H3K9ME3_subsample-0.25e6.cc.plot.pdf

./E058-H3K9ME3_subsample-0.25e6.cc.plot.pdf

./E058-H3K9ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E058-H3K9ME3_subsample-0.25e6.tagAlign.gz 499920 175 0.00782978807644401 30 0.007551957 1500 0.007288561 1.074257 2.054804 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E058-H3K9ME3_subsample-0.5e6.cc.plot.pdf

./E058-H3K9ME3_subsample-0.5e6.cc.plot.pdf

./E058-H3K9ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E058-H3K9ME3_subsample-0.5e6.tagAlign.gz 999855 180 0.0154093141536081 35 0.01495759 1500 0.01441643 1.068872 1.834724 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E058-H3K9ME3_subsample-10e6.cc.plot.pdf

./E058-H3K9ME3_subsample-10e6.cc.plot.pdf

./E058-H3K9ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E058-H3K9ME3_subsample-10e6.tagAlign.gz 19996996 180 0.237394912220482 35 0.2314264 1500 0.2228675 1.065184 1.697339 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E058-H3K9ME3_subsample-1e6.cc.plot.pdf

./E058-H3K9ME3_subsample-1e6.cc.plot.pdf

./E058-H3K9ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E058-H3K9ME3_subsample-1e6.tagAlign.gz 1999701 180 0.0301812892606387 35 0.02941649 1500 0.0282822 1.067148 1.674261 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E058-H3K9ME3_subsample-2.5e6.cc.plot.pdf

./E058-H3K9ME3_subsample-2.5e6.cc.plot.pdf

./E058-H3K9ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E058-H3K9ME3_subsample-2.5e6.tagAlign.gz 4999254 180 0.0721762087318124 35 0.07032074 1500 0.06768921 1.066288 1.705094 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E058-H3K9ME3_subsample-5e6.cc.plot.pdf

./E058-H3K9ME3_subsample-5e6.cc.plot.pdf

./E058-H3K9ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E058-H3K9ME3_subsample-5e6.tagAlign.gz 9998441 180 0.134629963717875 35 0.1311317 1500 0.1262722 1.066188 1.719903 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E058-H3K9ME3_subsample-7.5e6.cc.plot.pdf

./E058-H3K9ME3_subsample-7.5e6.cc.plot.pdf

./E058-H3K9ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E058-H3K9ME3_subsample-7.5e6.tagAlign.gz 14997625 180 0.189302966531318 35 0.1845099 1500 0.1775175 1.066391 1.685459 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E059-H3K27AC_merged.cc.plot.pdf

./E059-H3K27AC_merged.cc.plot.pdf

./E059-H3K27AC_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E059-H3K27AC_merged.tagAlign.gz 37266041 140 0.376867576140038 35 0.3513281 1500 0.3384552 1.113493 2.983971 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E059-H3K27AC_subsample-0.1e6.cc.plot.pdf

./E059-H3K27AC_subsample-0.1e6.cc.plot.pdf

./E059-H3K27AC_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E059-H3K27AC_subsample-0.1e6.tagAlign.gz 199984 170 0.00336692615448904 40 0.003244832 1500 0.003138041 1.072939 2.143308 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E059-H3K27AC_subsample-0.25e6.cc.plot.pdf

./E059-H3K27AC_subsample-0.25e6.cc.plot.pdf

./E059-H3K27AC_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E059-H3K27AC_subsample-0.25e6.tagAlign.gz 499961 140 0.00813728064580696 35 0.007486744 1500 0.007164817 1.135728 3.020758 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E059-H3K27AC_subsample-0.5e6.cc.plot.pdf

./E059-H3K27AC_subsample-0.5e6.cc.plot.pdf

./E059-H3K27AC_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E059-H3K27AC_subsample-0.5e6.tagAlign.gz 999918 140 0.0158555136208122 40 0.01471936 1500 0.01419926 1.116644 3.184474 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E059-H3K27AC_subsample-1e6.cc.plot.pdf

./E059-H3K27AC_subsample-1e6.cc.plot.pdf

./E059-H3K27AC_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E059-H3K27AC_subsample-1e6.tagAlign.gz 1999832 145 0.0311135048083349 35 0.02901889 1500 0.02789723 1.11529 2.867441 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E059-H3K27AC_subsample-2.5e6.cc.plot.pdf

./E059-H3K27AC_subsample-2.5e6.cc.plot.pdf

./E059-H3K27AC_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E059-H3K27AC_subsample-2.5e6.tagAlign.gz 4999609 145 0.0743652754840718 40 0.06930432 1500 0.06664932 1.115769 2.906206 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E059-H3K27AC_subsample-5e6.cc.plot.pdf

./E059-H3K27AC_subsample-5e6.cc.plot.pdf

./E059-H3K27AC_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E059-H3K27AC_subsample-5e6.tagAlign.gz 9999110 140 0.138380712803122 35 0.1291245 1500 0.1243349 1.112968 2.932524 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E059-H3K27AC_subsample-7.5e6.cc.plot.pdf

./E059-H3K27AC_subsample-7.5e6.cc.plot.pdf

./E059-H3K27AC_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E059-H3K27AC_subsample-7.5e6.tagAlign.gz 14998684 140 0.194368838172574 35 0.1812774 1500 0.1746115 1.11315 2.96396 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E059-H3K27ME3_merged.cc.plot.pdf

./E059-H3K27ME3_merged.cc.plot.pdf

./E059-H3K27ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E059-H3K27ME3_merged.tagAlign.gz 32120251 145 0.32518240539794 35 0.3217245 1500 0.3143778 1.034368 1.470666 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E059-H3K27ME3_subsample-0.1e6.cc.plot.pdf

./E059-H3K27ME3_subsample-0.1e6.cc.plot.pdf

./E059-H3K27ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E059-H3K27ME3_subsample-0.1e6.tagAlign.gz 199995 -355 0.00329848897136481 30 0.003152868 1500 0.003105203 1.062246 4.055083 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E059-H3K27ME3_subsample-0.25e6.cc.plot.pdf

./E059-H3K27ME3_subsample-0.25e6.cc.plot.pdf

./E059-H3K27ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E059-H3K27ME3_subsample-0.25e6.tagAlign.gz 499987 240 0.00755921522344344 40 0.007452029 1500 0.007237543 1.044445 1.499733 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E059-H3K27ME3_subsample-0.5e6.cc.plot.pdf

./E059-H3K27ME3_subsample-0.5e6.cc.plot.pdf

./E059-H3K27ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E059-H3K27ME3_subsample-0.5e6.tagAlign.gz 999969 140 0.0148800170496706 40 0.01473583 1500 0.01442313 1.031677 1.461125 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E059-H3K27ME3_subsample-1e6.cc.plot.pdf

./E059-H3K27ME3_subsample-1e6.cc.plot.pdf

./E059-H3K27ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E059-H3K27ME3_subsample-1e6.tagAlign.gz 1999930 140 0.0292222820152897 35 0.02887654 1500 0.02817163 1.037295 1.490478 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E059-H3K27ME3_subsample-2.5e6.cc.plot.pdf

./E059-H3K27ME3_subsample-2.5e6.cc.plot.pdf

./E059-H3K27ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E059-H3K27ME3_subsample-2.5e6.tagAlign.gz 4999810 155 0.0698825485964089 40 0.06908725 1500 0.06753163 1.034812 1.51124 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E059-H3K27ME3_subsample-5e6.cc.plot.pdf

./E059-H3K27ME3_subsample-5e6.cc.plot.pdf

./E059-H3K27ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E059-H3K27ME3_subsample-5e6.tagAlign.gz 9999648 145 0.130465858731468 35 0.1291186 1500 0.126089 1.034713 1.444696 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E059-H3K27ME3_subsample-7.5e6.cc.plot.pdf

./E059-H3K27ME3_subsample-7.5e6.cc.plot.pdf

./E059-H3K27ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E059-H3K27ME3_subsample-7.5e6.tagAlign.gz 14999470 145 0.183696006802386 40 0.1816731 1500 0.1775822 1.034428 1.494493 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E059-H3K36ME3_merged.cc.plot.pdf

./E059-H3K36ME3_merged.cc.plot.pdf

./E059-H3K36ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E059-H3K36ME3_merged.tagAlign.gz 31272331 180 0.317537447418204 35 0.3180293 1500 0.3115948 1.019072 0.9235531 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E059-H3K36ME3_subsample-0.1e6.cc.plot.pdf

./E059-H3K36ME3_subsample-0.1e6.cc.plot.pdf

./E059-H3K36ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E059-H3K36ME3_subsample-0.1e6.tagAlign.gz 199990 245 0.0033257154184156 35 0.003168933 1500 0.003209589 1.036181 -2.856335 NA
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E059-H3K36ME3_subsample-0.25e6.cc.plot.pdf

./E059-H3K36ME3_subsample-0.25e6.cc.plot.pdf

./E059-H3K36ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E059-H3K36ME3_subsample-0.25e6.tagAlign.gz 499986 250 0.0075997658119411 35 0.007567533 1500 0.00718615 1.057557 1.084515 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E059-H3K36ME3_subsample-0.5e6.cc.plot.pdf

./E059-H3K36ME3_subsample-0.5e6.cc.plot.pdf

./E059-H3K36ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E059-H3K36ME3_subsample-0.5e6.tagAlign.gz 999963 255 0.0149431966605977 35 0.01486605 1500 0.01468693 1.017448 1.430732 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E059-H3K36ME3_subsample-1e6.cc.plot.pdf

./E059-H3K36ME3_subsample-1e6.cc.plot.pdf

./E059-H3K36ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E059-H3K36ME3_subsample-1e6.tagAlign.gz 1999939 230 0.0292843172731792 40 0.02925341 1500 0.02860891 1.023608 1.047957 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E059-H3K36ME3_subsample-2.5e6.cc.plot.pdf

./E059-H3K36ME3_subsample-2.5e6.cc.plot.pdf

./E059-H3K36ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E059-H3K36ME3_subsample-2.5e6.tagAlign.gz 4999846 170 0.0698338870605962 35 0.07002227 1500 0.06845451 1.02015 0.8798384 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E059-H3K36ME3_subsample-5e6.cc.plot.pdf

./E059-H3K36ME3_subsample-5e6.cc.plot.pdf

./E059-H3K36ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E059-H3K36ME3_subsample-5e6.tagAlign.gz 9999676 190 0.130259013131628 35 0.1304301 1500 0.1277799 1.019402 0.9354315 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E059-H3K36ME3_subsample-7.5e6.cc.plot.pdf

./E059-H3K36ME3_subsample-7.5e6.cc.plot.pdf

./E059-H3K36ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E059-H3K36ME3_subsample-7.5e6.tagAlign.gz 14999509 180 0.183162468517427 35 0.1833494 1500 0.1796455 1.019577 0.9495238 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E059-H3K4ME1_merged.cc.plot.pdf

./E059-H3K4ME1_merged.cc.plot.pdf

./E059-H3K4ME1_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E059-H3K4ME1_merged.tagAlign.gz 29534943 160 0.305402902403117 35 0.3040906 1500 0.2963399 1.030583 1.169319 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E059-H3K4ME1_subsample-0.1e6.cc.plot.pdf

./E059-H3K4ME1_subsample-0.1e6.cc.plot.pdf

./E059-H3K4ME1_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E059-H3K4ME1_subsample-0.1e6.tagAlign.gz 199993 1115 0.0033557229533815 35 0.003218751 1500 0.003056309 1.097966 1.843205 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E059-H3K4ME1_subsample-0.25e6.cc.plot.pdf

./E059-H3K4ME1_subsample-0.25e6.cc.plot.pdf

./E059-H3K4ME1_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E059-H3K4ME1_subsample-0.25e6.tagAlign.gz 499981 370 0.00754066947058625 30 0.007409501 1500 0.007218973 1.044563 1.688444 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E059-H3K4ME1_subsample-0.5e6.cc.plot.pdf

./E059-H3K4ME1_subsample-0.5e6.cc.plot.pdf

./E059-H3K4ME1_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E059-H3K4ME1_subsample-0.5e6.tagAlign.gz 999959 150 0.0148542799086506 40 0.01482592 1500 0.0143204 1.037281 1.056108 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E059-H3K4ME1_subsample-1e6.cc.plot.pdf

./E059-H3K4ME1_subsample-1e6.cc.plot.pdf

./E059-H3K4ME1_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E059-H3K4ME1_subsample-1e6.tagAlign.gz 1999930 225 0.0291741675028468 40 0.02897421 1500 0.02826146 1.032295 1.280547 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E059-H3K4ME1_subsample-2.5e6.cc.plot.pdf

./E059-H3K4ME1_subsample-2.5e6.cc.plot.pdf

./E059-H3K4ME1_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E059-H3K4ME1_subsample-2.5e6.tagAlign.gz 4999815 190 0.0696266028155817 35 0.06932575 1500 0.06750324 1.031456 1.165078 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E059-H3K4ME1_subsample-5e6.cc.plot.pdf

./E059-H3K4ME1_subsample-5e6.cc.plot.pdf

./E059-H3K4ME1_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E059-H3K4ME1_subsample-5e6.tagAlign.gz 9999618 190 0.130048182695476 35 0.1294111 1500 0.1261563 1.03085 1.195753 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E059-H3K4ME1_subsample-7.5e6.cc.plot.pdf

./E059-H3K4ME1_subsample-7.5e6.cc.plot.pdf

./E059-H3K4ME1_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E059-H3K4ME1_subsample-7.5e6.tagAlign.gz 14999389 190 0.182916451320406 35 0.1821416 1500 0.1774907 1.030569 1.166602 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E059-H3K4ME3_merged.cc.plot.pdf

./E059-H3K4ME3_merged.cc.plot.pdf

./E059-H3K4ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E059-H3K4ME3_merged.tagAlign.gz 20063963 180 0.426859186615801 40 0.3951885 1500 0.245294 1.740194 1.211287 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E059-H3K4ME3_subsample-0.1e6.cc.plot.pdf

./E059-H3K4ME3_subsample-0.1e6.cc.plot.pdf

./E059-H3K4ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E059-H3K4ME3_subsample-0.1e6.tagAlign.gz 199990 140 0.0073897603941134 35 0.006982526 1500 0.004157828 1.777313 1.144169 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E059-H3K4ME3_subsample-0.25e6.cc.plot.pdf

./E059-H3K4ME3_subsample-0.25e6.cc.plot.pdf

./E059-H3K4ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E059-H3K4ME3_subsample-0.25e6.tagAlign.gz 499984 185 0.017803717796539 40 0.01632222 1500 0.01017949 1.748979 1.24118 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E059-H3K4ME3_subsample-0.5e6.cc.plot.pdf

./E059-H3K4ME3_subsample-0.5e6.cc.plot.pdf

./E059-H3K4ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E059-H3K4ME3_subsample-0.5e6.tagAlign.gz 999949 210 0.0346358755979158 35 0.03189759 1500 0.01993577 1.737374 1.228919 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E059-H3K4ME3_subsample-1e6.cc.plot.pdf

./E059-H3K4ME3_subsample-1e6.cc.plot.pdf

./E059-H3K4ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E059-H3K4ME3_subsample-1e6.tagAlign.gz 1999912 185 0.0667964215588791 40 0.06178297 1500 0.03841923 1.73862 1.214582 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E059-H3K4ME3_subsample-2.5e6.cc.plot.pdf

./E059-H3K4ME3_subsample-2.5e6.cc.plot.pdf

./E059-H3K4ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E059-H3K4ME3_subsample-2.5e6.tagAlign.gz 4999784 180 0.152212852404901 40 0.1408713 1500 0.08746251 1.740321 1.212355 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E059-H3K4ME3_subsample-5e6.cc.plot.pdf

./E059-H3K4ME3_subsample-5e6.cc.plot.pdf

./E059-H3K4ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E059-H3K4ME3_subsample-5e6.tagAlign.gz 9999580 185 0.265592365636965 40 0.2459026 1500 0.1531691 1.733981 1.212326 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E059-H3K4ME3_subsample-7.5e6.cc.plot.pdf

./E059-H3K4ME3_subsample-7.5e6.cc.plot.pdf

./E059-H3K4ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E059-H3K4ME3_subsample-7.5e6.tagAlign.gz 14999331 180 0.354569137261999 40 0.3283229 1500 0.2039674 1.738362 1.211058 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E059-H3K9ME3_merged.cc.plot.pdf

./E059-H3K9ME3_merged.cc.plot.pdf

./E059-H3K9ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E059-H3K9ME3_merged.tagAlign.gz 20444946 145 0.233608135981635 35 0.2341267 1500 0.2246424 1.039911 0.94532 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E059-H3K9ME3_subsample-0.1e6.cc.plot.pdf

./E059-H3K9ME3_subsample-0.1e6.cc.plot.pdf

./E059-H3K9ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E059-H3K9ME3_subsample-0.1e6.tagAlign.gz 199990 95 0.00332074871305594 30 0.003198636 1500 0.003103198 1.070105 2.279494 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E059-H3K9ME3_subsample-0.25e6.cc.plot.pdf

./E059-H3K9ME3_subsample-0.25e6.cc.plot.pdf

./E059-H3K9ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E059-H3K9ME3_subsample-0.25e6.tagAlign.gz 499980 190 0.00757284315024911 40 0.007536843 1500 0.007284657 1.039561 1.14275 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E059-H3K9ME3_subsample-0.5e6.cc.plot.pdf

./E059-H3K9ME3_subsample-0.5e6.cc.plot.pdf

./E059-H3K9ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E059-H3K9ME3_subsample-0.5e6.tagAlign.gz 999963 150 0.014899458290907 35 0.01493492 1500 0.01433224 1.039576 0.9411654 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E059-H3K9ME3_subsample-1e6.cc.plot.pdf

./E059-H3K9ME3_subsample-1e6.cc.plot.pdf

./E059-H3K9ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E059-H3K9ME3_subsample-1e6.tagAlign.gz 1999917 145 0.0293260194986403 35 0.02922405 1500 0.02819988 1.039934 1.099564 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E059-H3K9ME3_subsample-2.5e6.cc.plot.pdf

./E059-H3K9ME3_subsample-2.5e6.cc.plot.pdf

./E059-H3K9ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E059-H3K9ME3_subsample-2.5e6.tagAlign.gz 4999793 145 0.0698697008105174 35 0.07000098 1500 0.06706532 1.041816 0.9552822 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E059-H3K9ME3_subsample-5e6.cc.plot.pdf

./E059-H3K9ME3_subsample-5e6.cc.plot.pdf

./E059-H3K9ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E059-H3K9ME3_subsample-5e6.tagAlign.gz 9999611 150 0.130309967392474 35 0.1305595 1500 0.1251738 1.041032 0.9536744 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E059-H3K9ME3_subsample-7.5e6.cc.plot.pdf

./E059-H3K9ME3_subsample-7.5e6.cc.plot.pdf

./E059-H3K9ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E059-H3K9ME3_subsample-7.5e6.tagAlign.gz 14999424 150 0.183039999251332 35 0.1834224 1500 0.1760304 1.039821 0.9482633 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E061-H3K27AC_merged.cc.plot.pdf

./E061-H3K27AC_merged.cc.plot.pdf

./E061-H3K27AC_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E061-H3K27AC_merged.tagAlign.gz 37394831 155 0.410945887526836 35 0.3847218 1500 0.3494197 1.176081 1.742847 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E061-H3K27AC_subsample-0.1e6.cc.plot.pdf

./E061-H3K27AC_subsample-0.1e6.cc.plot.pdf

./E061-H3K27AC_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E061-H3K27AC_subsample-0.1e6.tagAlign.gz 200000 190 0.0038092610105353 40 0.003501409 1500 0.003200963 1.190036 2.024653 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E061-H3K27AC_subsample-0.25e6.cc.plot.pdf

./E061-H3K27AC_subsample-0.25e6.cc.plot.pdf

./E061-H3K27AC_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E061-H3K27AC_subsample-0.25e6.tagAlign.gz 499995 140 0.00900822578681053 35 0.008424898 1500 0.007675658 1.17361 1.778559 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E061-H3K27AC_subsample-0.5e6.cc.plot.pdf

./E061-H3K27AC_subsample-0.5e6.cc.plot.pdf

./E061-H3K27AC_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E061-H3K27AC_subsample-0.5e6.tagAlign.gz 999992 150 0.0179934450022423 30 0.01675538 1500 0.01516331 1.186644 1.777647 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E061-H3K27AC_subsample-10e6.cc.plot.pdf

./E061-H3K27AC_subsample-10e6.cc.plot.pdf

./E061-H3K27AC_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E061-H3K27AC_subsample-10e6.tagAlign.gz 19999836 155 0.268489173396256 35 0.2514072 1500 0.2284035 1.175504 1.742578 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E061-H3K27AC_subsample-1e6.cc.plot.pdf

./E061-H3K27AC_subsample-1e6.cc.plot.pdf

./E061-H3K27AC_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E061-H3K27AC_subsample-1e6.tagAlign.gz 1999985 165 0.0350012624044419 35 0.03286052 1500 0.02976584 1.175887 1.691752 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E061-H3K27AC_subsample-2.5e6.cc.plot.pdf

./E061-H3K27AC_subsample-2.5e6.cc.plot.pdf

./E061-H3K27AC_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E061-H3K27AC_subsample-2.5e6.tagAlign.gz 4999954 155 0.0832950923760076 40 0.07801283 1500 0.07075904 1.177165 1.728207 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E061-H3K27AC_subsample-5e6.cc.plot.pdf

./E061-H3K27AC_subsample-5e6.cc.plot.pdf

./E061-H3K27AC_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E061-H3K27AC_subsample-5e6.tagAlign.gz 9999912 160 0.154085145233242 40 0.1443248 1500 0.1310786 1.175517 1.73684 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E061-H3K27AC_subsample-7.5e6.cc.plot.pdf

./E061-H3K27AC_subsample-7.5e6.cc.plot.pdf

./E061-H3K27AC_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E061-H3K27AC_subsample-7.5e6.tagAlign.gz 14999894 155 0.215121444836513 35 0.2014785 1500 0.1830112 1.175455 1.738764 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E061-H3K27ME3_merged.cc.plot.pdf

./E061-H3K27ME3_merged.cc.plot.pdf

./E061-H3K27ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E061-H3K27ME3_merged.tagAlign.gz 40487461 150 0.40140917607616 35 0.3821471 1500 0.3717226 1.079862 2.847777 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E061-H3K27ME3_subsample-0.1e6.cc.plot.pdf

./E061-H3K27ME3_subsample-0.1e6.cc.plot.pdf

./E061-H3K27ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E061-H3K27ME3_subsample-0.1e6.tagAlign.gz 199997 285 0.00342610044605013 30 0.003184493 1500 0.003249848 1.054234 -2.696848 NA
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E061-H3K27ME3_subsample-0.25e6.cc.plot.pdf

./E061-H3K27ME3_subsample-0.25e6.cc.plot.pdf

./E061-H3K27ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E061-H3K27ME3_subsample-0.25e6.tagAlign.gz 499995 175 0.00816779891343677 30 0.007683641 1500 0.007509295 1.087692 3.776982 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E061-H3K27ME3_subsample-0.5e6.cc.plot.pdf

./E061-H3K27ME3_subsample-0.5e6.cc.plot.pdf

./E061-H3K27ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E061-H3K27ME3_subsample-0.5e6.tagAlign.gz 999995 160 0.0160752274238613 35 0.01508406 1500 0.01484065 1.083189 5.07204 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E061-H3K27ME3_subsample-10e6.cc.plot.pdf

./E061-H3K27ME3_subsample-10e6.cc.plot.pdf

./E061-H3K27ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E061-H3K27ME3_subsample-10e6.tagAlign.gz 19999840 155 0.246238797704788 35 0.2343515 1500 0.2279243 1.080353 2.849547 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E061-H3K27ME3_subsample-1e6.cc.plot.pdf

./E061-H3K27ME3_subsample-1e6.cc.plot.pdf

./E061-H3K27ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E061-H3K27ME3_subsample-1e6.tagAlign.gz 1999990 165 0.0313390508918883 40 0.02990634 1500 0.02891947 1.083666 2.451765 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E061-H3K27ME3_subsample-2.5e6.cc.plot.pdf

./E061-H3K27ME3_subsample-2.5e6.cc.plot.pdf

./E061-H3K27ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E061-H3K27ME3_subsample-2.5e6.tagAlign.gz 4999948 150 0.0747780046980942 35 0.07131489 1500 0.06940757 1.077375 2.815695 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E061-H3K27ME3_subsample-20e6.cc.plot.pdf

./E061-H3K27ME3_subsample-20e6.cc.plot.pdf

./E061-H3K27ME3_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E061-H3K27ME3_subsample-20e6.tagAlign.gz 39999681 150 0.398419549735208 35 0.3793039 1500 0.3689474 1.079882 2.845766 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E061-H3K27ME3_subsample-5e6.cc.plot.pdf

./E061-H3K27ME3_subsample-5e6.cc.plot.pdf

./E061-H3K27ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E061-H3K27ME3_subsample-5e6.tagAlign.gz 9999916 160 0.139585751539321 35 0.132965 1500 0.1292904 1.07963 2.801751 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E061-H3K27ME3_subsample-7.5e6.cc.plot.pdf

./E061-H3K27ME3_subsample-7.5e6.cc.plot.pdf

./E061-H3K27ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E061-H3K27ME3_subsample-7.5e6.tagAlign.gz 14999877 150 0.19630561394008 35 0.1868795 1500 0.1817305 1.080202 2.830678 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E061-H3K36ME3_merged.cc.plot.pdf

./E061-H3K36ME3_merged.cc.plot.pdf

./E061-H3K36ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E061-H3K36ME3_merged.tagAlign.gz 41109872 175 0.422443034826155 35 0.4098216 1500 0.3936514 1.07314 1.780532 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E061-H3K36ME3_subsample-0.1e6.cc.plot.pdf

./E061-H3K36ME3_subsample-0.1e6.cc.plot.pdf

./E061-H3K36ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E061-H3K36ME3_subsample-0.1e6.tagAlign.gz 199999 180 0.00377155989631264 30 0.003507462 1500 0.003326601 1.133758 2.46023 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E061-H3K36ME3_subsample-0.25e6.cc.plot.pdf

./E061-H3K36ME3_subsample-0.25e6.cc.plot.pdf

./E061-H3K36ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E061-H3K36ME3_subsample-0.25e6.tagAlign.gz 499998 175 0.0089900382269798 30 0.008676187 1500 0.008291725 1.084218 1.816339 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E061-H3K36ME3_subsample-0.5e6.cc.plot.pdf

./E061-H3K36ME3_subsample-0.5e6.cc.plot.pdf

./E061-H3K36ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E061-H3K36ME3_subsample-0.5e6.tagAlign.gz 999997 190 0.0176329378002392 30 0.0169944 1500 0.01625693 1.084642 1.865841 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E061-H3K36ME3_subsample-10e6.cc.plot.pdf

./E061-H3K36ME3_subsample-10e6.cc.plot.pdf

./E061-H3K36ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E061-H3K36ME3_subsample-10e6.tagAlign.gz 19999878 175 0.261325111188505 35 0.2535879 1500 0.2435204 1.073114 1.768536 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E061-H3K36ME3_subsample-1e6.cc.plot.pdf

./E061-H3K36ME3_subsample-1e6.cc.plot.pdf

./E061-H3K36ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E061-H3K36ME3_subsample-1e6.tagAlign.gz 1999987 165 0.0342417267824357 35 0.03323883 1500 0.03197236 1.070979 1.791885 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E061-H3K36ME3_subsample-2.5e6.cc.plot.pdf

./E061-H3K36ME3_subsample-2.5e6.cc.plot.pdf

./E061-H3K36ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E061-H3K36ME3_subsample-2.5e6.tagAlign.gz 4999975 170 0.0813728267877763 35 0.07895031 1500 0.07576562 1.074007 1.760677 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E061-H3K36ME3_subsample-20e6.cc.plot.pdf

./E061-H3K36ME3_subsample-20e6.cc.plot.pdf

./E061-H3K36ME3_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E061-H3K36ME3_subsample-20e6.tagAlign.gz 39999752 175 0.415699570685745 35 0.4032515 1500 0.3873288 1.073247 1.781775 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E061-H3K36ME3_subsample-5e6.cc.plot.pdf

./E061-H3K36ME3_subsample-5e6.cc.plot.pdf

./E061-H3K36ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E061-H3K36ME3_subsample-5e6.tagAlign.gz 9999932 175 0.150163997871895 35 0.1459195 1500 0.1400713 1.072054 1.725771 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E061-H3K36ME3_subsample-7.5e6.cc.plot.pdf

./E061-H3K36ME3_subsample-7.5e6.cc.plot.pdf

./E061-H3K36ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E061-H3K36ME3_subsample-7.5e6.tagAlign.gz 14999924 175 0.209618768566667 35 0.2034182 1500 0.1954062 1.072733 1.773906 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E061-H3K4ME1_merged.cc.plot.pdf

./E061-H3K4ME1_merged.cc.plot.pdf

./E061-H3K4ME1_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E061-H3K4ME1_merged.tagAlign.gz 52283418 180 0.469041887252547 35 0.4535444 1500 0.4270428 1.098349 1.584777 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E061-H3K4ME1_subsample-0.1e6.cc.plot.pdf

./E061-H3K4ME1_subsample-0.1e6.cc.plot.pdf

./E061-H3K4ME1_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E061-H3K4ME1_subsample-0.1e6.tagAlign.gz 200000 220 0.00350624937111903 30 0.003265952 1500 0.003116003 1.12524 2.602515 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E061-H3K4ME1_subsample-0.25e6.cc.plot.pdf

./E061-H3K4ME1_subsample-0.25e6.cc.plot.pdf

./E061-H3K4ME1_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E061-H3K4ME1_subsample-0.25e6.tagAlign.gz 499998 275 0.00836941733549825 40 0.00799643 1500 0.007468689 1.120601 1.706763 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E061-H3K4ME1_subsample-0.5e6.cc.plot.pdf

./E061-H3K4ME1_subsample-0.5e6.cc.plot.pdf

./E061-H3K4ME1_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E061-H3K4ME1_subsample-0.5e6.tagAlign.gz 999997 160 0.016486718221606 40 0.01574243 1500 0.01484321 1.110725 1.827705 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E061-H3K4ME1_subsample-10e6.cc.plot.pdf

./E061-H3K4ME1_subsample-10e6.cc.plot.pdf

./E061-H3K4ME1_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E061-H3K4ME1_subsample-10e6.tagAlign.gz 19999912 180 0.249832673552803 35 0.2415764 1500 0.2274714 1.098303 1.585342 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E061-H3K4ME1_subsample-1e6.cc.plot.pdf

./E061-H3K4ME1_subsample-1e6.cc.plot.pdf

./E061-H3K4ME1_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E061-H3K4ME1_subsample-1e6.tagAlign.gz 1999988 210 0.0321728233951044 30 0.03100956 1500 0.02904209 1.1078 1.591251 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E061-H3K4ME1_subsample-2.5e6.cc.plot.pdf

./E061-H3K4ME1_subsample-2.5e6.cc.plot.pdf

./E061-H3K4ME1_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E061-H3K4ME1_subsample-2.5e6.tagAlign.gz 4999979 185 0.0765154112989789 40 0.07396571 1500 0.06965857 1.098435 1.591971 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E061-H3K4ME1_subsample-20e6.cc.plot.pdf

./E061-H3K4ME1_subsample-20e6.cc.plot.pdf

./E061-H3K4ME1_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E061-H3K4ME1_subsample-20e6.tagAlign.gz 39999861 180 0.401810291802575 35 0.3886071 1500 0.3658918 1.098167 1.58125 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E061-H3K4ME1_subsample-5e6.cc.plot.pdf

./E061-H3K4ME1_subsample-5e6.cc.plot.pdf

./E061-H3K4ME1_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E061-H3K4ME1_subsample-5e6.tagAlign.gz 9999962 180 0.142283341907793 35 0.1375318 1500 0.1294431 1.099196 1.587425 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E061-H3K4ME1_subsample-7.5e6.cc.plot.pdf

./E061-H3K4ME1_subsample-7.5e6.cc.plot.pdf

./E061-H3K4ME1_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E061-H3K4ME1_subsample-7.5e6.tagAlign.gz 14999946 180 0.199451729109207 35 0.1928518 1500 0.1815679 1.098497 1.584898 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E061-H3K4ME3_merged.cc.plot.pdf

./E061-H3K4ME3_merged.cc.plot.pdf

./E061-H3K4ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E061-H3K4ME3_merged.tagAlign.gz 35037999 175 0.658400673147967 40 0.607069 1500 0.3146458 2.092514 1.175539 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E061-H3K4ME3_subsample-0.1e6.cc.plot.pdf

./E061-H3K4ME3_subsample-0.1e6.cc.plot.pdf

./E061-H3K4ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E061-H3K4ME3_subsample-0.1e6.tagAlign.gz 199996 155 0.00937667654626466 40 0.00878272 1500 0.004260843 2.200662 1.131352 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E061-H3K4ME3_subsample-0.25e6.cc.plot.pdf

./E061-H3K4ME3_subsample-0.25e6.cc.plot.pdf

./E061-H3K4ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E061-H3K4ME3_subsample-0.25e6.tagAlign.gz 499986 180 0.0228599293558279 40 0.02062153 1500 0.01086272 2.104438 1.229372 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E061-H3K4ME3_subsample-0.5e6.cc.plot.pdf

./E061-H3K4ME3_subsample-0.5e6.cc.plot.pdf

./E061-H3K4ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E061-H3K4ME3_subsample-0.5e6.tagAlign.gz 999982 165 0.044038159864926 35 0.04041338 1500 0.02098113 2.098941 1.186534 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E061-H3K4ME3_subsample-10e6.cc.plot.pdf

./E061-H3K4ME3_subsample-10e6.cc.plot.pdf

./E061-H3K4ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E061-H3K4ME3_subsample-10e6.tagAlign.gz 19999726 175 0.501624033680097 40 0.4624375 1500 0.2400884 2.08933 1.176239 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E061-H3K4ME3_subsample-1e6.cc.plot.pdf

./E061-H3K4ME3_subsample-1e6.cc.plot.pdf

./E061-H3K4ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E061-H3K4ME3_subsample-1e6.tagAlign.gz 1999975 175 0.0846518027497858 40 0.07800605 1500 0.04064106 2.082913 1.17786 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E061-H3K4ME3_subsample-2.5e6.cc.plot.pdf

./E061-H3K4ME3_subsample-2.5e6.cc.plot.pdf

./E061-H3K4ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E061-H3K4ME3_subsample-2.5e6.tagAlign.gz 4999917 165 0.189114468105308 40 0.1745656 1500 0.09056121 2.08825 1.173192 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E061-H3K4ME3_subsample-5e6.cc.plot.pdf

./E061-H3K4ME3_subsample-5e6.cc.plot.pdf

./E061-H3K4ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E061-H3K4ME3_subsample-5e6.tagAlign.gz 9999868 185 0.323389948915103 40 0.297901 1500 0.1548019 2.089057 1.178121 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E061-H3K4ME3_subsample-7.5e6.cc.plot.pdf

./E061-H3K4ME3_subsample-7.5e6.cc.plot.pdf

./E061-H3K4ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E061-H3K4ME3_subsample-7.5e6.tagAlign.gz 14999794 175 0.423430106303947 40 0.3907045 1500 0.202872 2.087179 1.174227 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E061-H3K9ME3_merged.cc.plot.pdf

./E061-H3K9ME3_merged.cc.plot.pdf

./E061-H3K9ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E061-H3K9ME3_merged.tagAlign.gz 25013871 140 0.286508447059403 35 0.2742119 1500 0.260209 1.10107 1.87814 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E061-H3K9ME3_subsample-0.1e6.cc.plot.pdf

./E061-H3K9ME3_subsample-0.1e6.cc.plot.pdf

./E061-H3K9ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E061-H3K9ME3_subsample-0.1e6.tagAlign.gz 199984 130 0.00343294563368799 40 0.003254027 1500 0.003149215 1.090096 2.707049 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E061-H3K9ME3_subsample-0.25e6.cc.plot.pdf

./E061-H3K9ME3_subsample-0.25e6.cc.plot.pdf

./E061-H3K9ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E061-H3K9ME3_subsample-0.25e6.tagAlign.gz 499973 175 0.00804999880495781 40 0.007696231 1500 0.007165125 1.123497 1.666095 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E061-H3K9ME3_subsample-0.5e6.cc.plot.pdf

./E061-H3K9ME3_subsample-0.5e6.cc.plot.pdf

./E061-H3K9ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E061-H3K9ME3_subsample-0.5e6.tagAlign.gz 999943 135 0.0159347497239812 35 0.01515857 1500 0.01444815 1.102892 2.092547 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E061-H3K9ME3_subsample-10e6.cc.plot.pdf

./E061-H3K9ME3_subsample-10e6.cc.plot.pdf

./E061-H3K9ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E061-H3K9ME3_subsample-10e6.tagAlign.gz 19999013 140 0.242928649065546 35 0.2325748 1500 0.2206978 1.10073 1.871752 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E061-H3K9ME3_subsample-1e6.cc.plot.pdf

./E061-H3K9ME3_subsample-1e6.cc.plot.pdf

./E061-H3K9ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E061-H3K9ME3_subsample-1e6.tagAlign.gz 1999897 145 0.0312421237330605 40 0.02971039 1500 0.02827311 1.105012 2.065712 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E061-H3K9ME3_subsample-2.5e6.cc.plot.pdf

./E061-H3K9ME3_subsample-2.5e6.cc.plot.pdf

./E061-H3K9ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E061-H3K9ME3_subsample-2.5e6.tagAlign.gz 4999743 145 0.0744106493745544 35 0.0711269 1500 0.06757784 1.10111 1.925243 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E061-H3K9ME3_subsample-5e6.cc.plot.pdf

./E061-H3K9ME3_subsample-5e6.cc.plot.pdf

./E061-H3K9ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E061-H3K9ME3_subsample-5e6.tagAlign.gz 9999483 140 0.138286156552083 35 0.1323902 1500 0.125606 1.100952 1.869076 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E061-H3K9ME3_subsample-7.5e6.cc.plot.pdf

./E061-H3K9ME3_subsample-7.5e6.cc.plot.pdf

./E061-H3K9ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E061-H3K9ME3_subsample-7.5e6.tagAlign.gz 14999274 140 0.193989452688698 35 0.1856873 1500 0.1762012 1.100954 1.875191 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E062-H3K27AC_merged.cc.plot.pdf

./E062-H3K27AC_merged.cc.plot.pdf

./E062-H3K27AC_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E062-H3K27AC_merged.tagAlign.gz 42503618 185 0.379535453018707 35 0.3800457 1500 0.3682022 1.03078 0.9569138 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E062-H3K27AC_subsample-0.1e6.cc.plot.pdf

./E062-H3K27AC_subsample-0.1e6.cc.plot.pdf

./E062-H3K27AC_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E062-H3K27AC_subsample-0.1e6.tagAlign.gz 199999 1080 0.00329264355030479 30 0.003143817 1500 0.003002348 1.09669 2.052008 2 E062-H3K27AC_subsample-0.1e6.tagAlign.gz 200000 1310 0.0032365466665164 30 0.003173702 1500 0.003085479 1.048961 1.712343 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E062-H3K27AC_subsample-0.25e6.cc.plot.pdf

./E062-H3K27AC_subsample-0.25e6.cc.plot.pdf

./E062-H3K27AC_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E062-H3K27AC_subsample-0.25e6.tagAlign.gz 499996 180 0.0073200197262988 30 0.007252429 1500 0.006946746 1.053734 1.221112 1 E062-H3K27AC_subsample-0.25e6.tagAlign.gz 499995 125 0.00732786652960205 35 0.007285216 1500 0.006945293 1.055084 1.12547 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E062-H3K27AC_subsample-0.5e6.cc.plot.pdf

./E062-H3K27AC_subsample-0.5e6.cc.plot.pdf

./E062-H3K27AC_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E062-H3K27AC_subsample-0.5e6.tagAlign.gz 999988 195 0.0144668333701634 40 0.01434057 1500 0.01387178 1.042897 1.269343 1 E062-H3K27AC_subsample-0.5e6.tagAlign.gz 999991 200 0.0144430652758417 35 0.01443901 1500 0.01395451 1.035011 1.008376 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E062-H3K27AC_subsample-1e6.cc.plot.pdf

./E062-H3K27AC_subsample-1e6.cc.plot.pdf

./E062-H3K27AC_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E062-H3K27AC_subsample-1e6.tagAlign.gz 1999980 150 0.0282789490741584 40 0.02830274 1500 0.02739279 1.03235 0.9738494 0 E062-H3K27AC_subsample-1e6.tagAlign.gz 1999978 85 0.0282636000725818 35 0.02828126 1500 0.02736906 1.032684 0.980637 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E062-H3K27AC_subsample-2.5e6.cc.plot.pdf

./E062-H3K27AC_subsample-2.5e6.cc.plot.pdf

./E062-H3K27AC_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E062-H3K27AC_subsample-2.5e6.tagAlign.gz 4999955 185 0.0677145888961614 35 0.06770248 1500 0.06563981 1.031608 1.005868 1 E062-H3K27AC_subsample-2.5e6.tagAlign.gz 4999961 185 0.0676747731108077 35 0.06779972 1500 0.06551745 1.032927 0.9452512 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E062-H3K27AC_subsample-5e6.cc.plot.pdf

./E062-H3K27AC_subsample-5e6.cc.plot.pdf

./E062-H3K27AC_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E062-H3K27AC_subsample-5e6.tagAlign.gz 9999923 190 0.12659799806893 35 0.1267199 1500 0.1226598 1.032107 0.9699724 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E062-H3K27ME3_merged.cc.plot.pdf

./E062-H3K27ME3_merged.cc.plot.pdf

./E062-H3K27ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E062-H3K27ME3_merged.tagAlign.gz 60843565 295 0.46503407262035 35 0.4623259 1500 0.4531541 1.026216 1.295265 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E062-H3K36ME3_merged.cc.plot.pdf

./E062-H3K36ME3_merged.cc.plot.pdf

./E062-H3K36ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E062-H3K36ME3_merged.tagAlign.gz 35991208 180 0.390421816106185 35 0.3857522 1500 0.3632069 1.07493 1.207119 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E062-H3K36ME3_subsample-10e6.cc.plot.pdf

./E062-H3K36ME3_subsample-10e6.cc.plot.pdf

./E062-H3K36ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E062-H3K36ME3_subsample-10e6.tagAlign.gz 19999091 180 0.265235681305284 35 0.2620831 1500 0.2468792 1.074354 1.207353 1 E062-H3K36ME3_subsample-10e6.tagAlign.gz 19999098 180 0.265323900018377 35 0.2620819 1500 0.2469679 1.074325 1.214503 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E062-H3K36ME3_subsample-2.5e6.cc.plot.pdf

./E062-H3K36ME3_subsample-2.5e6.cc.plot.pdf

./E062-H3K36ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E062-H3K36ME3_subsample-2.5e6.tagAlign.gz 4999767 185 0.0843354942326485 35 0.08329222 1500 0.07853304 1.073886 1.219214 1 E062-H3K36ME3_subsample-2.5e6.tagAlign.gz 4999768 170 0.0843547367001111 35 0.08339199 1500 0.07850156 1.074561 1.196862 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E062-H3K4ME1_merged.cc.plot.pdf

./E062-H3K4ME1_merged.cc.plot.pdf

./E062-H3K4ME1_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E062-H3K4ME1_merged.tagAlign.gz 45041756 140 0.401104335322253 35 0.4004126 1500 0.3881902 1.033268 1.056592 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E062-H3K4ME1_subsample-0.1e6.cc.plot.pdf

./E062-H3K4ME1_subsample-0.1e6.cc.plot.pdf

./E062-H3K4ME1_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E062-H3K4ME1_subsample-0.1e6.tagAlign.gz 199991 1350 0.00330313262981944 35 0.003293208 1500 0.003161621 1.044759 1.075425 1 E062-H3K4ME1_subsample-0.1e6.tagAlign.gz 199987 -20 0.00331131923947155 35 0.003325956 1500 0.003125977 1.059291 0.92681 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E062-H3K4ME1_subsample-0.25e6.cc.plot.pdf

./E062-H3K4ME1_subsample-0.25e6.cc.plot.pdf

./E062-H3K4ME1_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E062-H3K4ME1_subsample-0.25e6.tagAlign.gz 499968 100 0.00760116345236823 40 0.007466928 1500 0.007324443 1.03778 1.942108 2 E062-H3K4ME1_subsample-0.25e6.tagAlign.gz 499968 170 0.00764908431102406 40 0.007608959 1500 0.007315751 1.045564 1.13685 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E062-H3K4ME1_subsample-0.5e6.cc.plot.pdf

./E062-H3K4ME1_subsample-0.5e6.cc.plot.pdf

./E062-H3K4ME1_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E062-H3K4ME1_subsample-0.5e6.tagAlign.gz 999954 135 0.015020943315437 35 0.01492828 1500 0.01443832 1.040352 1.189137 1 E062-H3K4ME1_subsample-0.5e6.tagAlign.gz 999935 145 0.015027576298215 40 0.01487413 1500 0.01440937 1.042903 1.33016 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E062-H3K4ME1_subsample-1e6.cc.plot.pdf

./E062-H3K4ME1_subsample-1e6.cc.plot.pdf

./E062-H3K4ME1_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E062-H3K4ME1_subsample-1e6.tagAlign.gz 1999868 150 0.029411491878981 35 0.02927339 1500 0.02834958 1.037458 1.149497 1 E062-H3K4ME1_subsample-1e6.tagAlign.gz 1999884 155 0.029452669440344 35 0.02936689 1500 0.028361 1.038492 1.08528 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E062-H3K4ME1_subsample-2.5e6.cc.plot.pdf

./E062-H3K4ME1_subsample-2.5e6.cc.plot.pdf

./E062-H3K4ME1_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E062-H3K4ME1_subsample-2.5e6.tagAlign.gz 4999675 155 0.0701908475544926 40 0.07008629 1500 0.06795879 1.032844 1.049144 1 E062-H3K4ME1_subsample-2.5e6.tagAlign.gz 4999714 165 0.0701163739876257 30 0.07000329 1500 0.06781601 1.033921 1.051703 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E062-H3K4ME1_subsample-5e6.cc.plot.pdf

./E062-H3K4ME1_subsample-5e6.cc.plot.pdf

./E062-H3K4ME1_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E062-H3K4ME1_subsample-5e6.tagAlign.gz 9999404 140 0.130866089628389 40 0.1305427 1500 0.126668 1.033142 1.083455 1 E062-H3K4ME1_subsample-5e6.tagAlign.gz 9999424 160 0.130850955766017 40 0.1306019 1500 0.1265531 1.033961 1.061522 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E062-H3K4ME1_subsample-7.5e6.cc.plot.pdf

./E062-H3K4ME1_subsample-7.5e6.cc.plot.pdf

./E062-H3K4ME1_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E062-H3K4ME1_subsample-7.5e6.tagAlign.gz 14999079 160 0.183845814176485 35 0.1836527 1500 0.1778633 1.033635 1.033362 1 E062-H3K4ME1_subsample-7.5e6.tagAlign.gz 14999108 160 0.183797071841562 40 0.1835319 1500 0.177875 1.033294 1.046877 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E062-H3K4ME3_merged.cc.plot.pdf

./E062-H3K4ME3_merged.cc.plot.pdf

./E062-H3K4ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E062-H3K4ME3_merged.tagAlign.gz 34330271 210 0.401224804943938 40 0.3857569 1500 0.3082572 1.301591 1.199587 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E062-H3K4ME3_subsample-0.1e6.cc.plot.pdf

./E062-H3K4ME3_subsample-0.1e6.cc.plot.pdf

./E062-H3K4ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E062-H3K4ME3_subsample-0.1e6.tagAlign.gz 199998 220 0.00416882079041161 30 0.00385995 1500 0.003164306 1.317452 1.444006 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E062-H3K4ME3_subsample-0.25e6.cc.plot.pdf

./E062-H3K4ME3_subsample-0.25e6.cc.plot.pdf

./E062-H3K4ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E062-H3K4ME3_subsample-0.25e6.tagAlign.gz 499992 225 0.0100279050349138 40 0.009323198 1500 0.007418652 1.351715 1.370013 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E062-H3K4ME3_subsample-0.5e6.cc.plot.pdf

./E062-H3K4ME3_subsample-0.5e6.cc.plot.pdf

./E062-H3K4ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E062-H3K4ME3_subsample-0.5e6.tagAlign.gz 999989 170 0.0195472286613261 30 0.01850097 1500 0.01478158 1.322404 1.2813 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E062-H3K4ME3_subsample-10e6.cc.plot.pdf

./E062-H3K4ME3_subsample-10e6.cc.plot.pdf

./E062-H3K4ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E062-H3K4ME3_subsample-10e6.tagAlign.gz 19999705 210 0.281262230006536 40 0.2702981 1500 0.2158018 1.303336 1.20119 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E062-H3K9ME3_merged.cc.plot.pdf

./E062-H3K9ME3_merged.cc.plot.pdf

./E062-H3K9ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E062-H3K9ME3_merged.tagAlign.gz 55068085 295 0.431154807994085 35 0.4352364 1500 0.4223459 1.020857 0.6833638 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E062-H3K9ME3_subsample-0.1e6.cc.plot.pdf

./E062-H3K9ME3_subsample-0.1e6.cc.plot.pdf

./E062-H3K9ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E062-H3K9ME3_subsample-0.1e6.tagAlign.gz 199990 -45 0.00330710569775723 30 0.003198039 1500 0.003118745 1.060396 2.375469 2 E062-H3K9ME3_subsample-0.1e6.tagAlign.gz 199991 1020 0.00325011005379894 40 0.003192746 1500 0.003142006 1.034406 2.130541 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E062-H3K9ME3_subsample-0.25e6.cc.plot.pdf

./E062-H3K9ME3_subsample-0.25e6.cc.plot.pdf

./E062-H3K9ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E062-H3K9ME3_subsample-0.25e6.tagAlign.gz 499976 65 0.00746845341443973 30 0.007581594 1500 0.007066444 1.05689 0.7803739 0 E062-H3K9ME3_subsample-0.25e6.tagAlign.gz 499971 80 0.00753747012807468 40 0.007656703 1500 0.0070473 1.069554 0.8043449 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E062-H3K9ME3_subsample-0.5e6.cc.plot.pdf

./E062-H3K9ME3_subsample-0.5e6.cc.plot.pdf

./E062-H3K9ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E062-H3K9ME3_subsample-0.5e6.tagAlign.gz 999939 60 0.0147735062160024 35 0.0150506 1500 0.01398915 1.056069 0.738946 0 E062-H3K9ME3_subsample-0.5e6.tagAlign.gz 999937 50 0.0149298492426359 35 0.01502434 1500 0.01400087 1.066351 0.9076762 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E062-H3K9ME3_subsample-2.5e6.cc.plot.pdf

./E062-H3K9ME3_subsample-2.5e6.cc.plot.pdf

./E062-H3K9ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E062-H3K9ME3_subsample-2.5e6.tagAlign.gz 4999633 75 0.068996904960528 35 0.07041216 1500 0.06590875 1.046855 0.6857372 0 E062-H3K9ME3_subsample-2.5e6.tagAlign.gz 4999687 75 0.0689190646234525 40 0.07035238 1500 0.06588166 1.046104 0.6793987 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./E062-H3K9ME3_subsample-20e6.cc.plot.pdf

./E062-H3K9ME3_subsample-20e6.cc.plot.pdf

./E062-H3K9ME3_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
E062-H3K9ME3_subsample-20e6.tagAlign.gz 39997347 300 0.357132146902765 35 0.3622793 1500 0.3495071 1.021817 0.5970041 0
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM10847-H3K27AC_merged.cc.plot.pdf

./GM10847-H3K27AC_merged.cc.plot.pdf

./GM10847-H3K27AC_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM10847-H3K27AC_merged.tagAlign.gz 124964664 275 0.739609994806601 105 0.6830372 1500 0.5538107 1.335492 1.43778 1 GM10847-H3K27AC_merged.tagAlign.gz 124964664 275 0.739609994806601 105 0.6830372 1500 0.5538107 1.335492 1.43778 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM10847-H3K27AC_subsample-0.1e6.cc.plot.pdf

./GM10847-H3K27AC_subsample-0.1e6.cc.plot.pdf

./GM10847-H3K27AC_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM10847-H3K27AC_subsample-0.1e6.tagAlign.gz 200000 255 0.0429500619205136 100 0.006801482 1500 0.004906794 8.753181 20.07891 2 GM10847-H3K27AC_subsample-0.1e6.tagAlign.gz 200000 250 0.0429439500003392 95 0.00650419 1500 0.004837553 8.877204 22.86425 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM10847-H3K27AC_subsample-0.25e6.cc.plot.pdf

./GM10847-H3K27AC_subsample-0.25e6.cc.plot.pdf

./GM10847-H3K27AC_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM10847-H3K27AC_subsample-0.25e6.tagAlign.gz 500000 250 0.0528480267749984 105 0.0161727 1500 0.01279188 4.131373 11.84806 2 GM10847-H3K27AC_subsample-0.25e6.tagAlign.gz 500000 250 0.0523927799248836 105 0.01647592 1500 0.01239851 4.225731 9.808745 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM10847-H3K27AC_subsample-0.5e6.cc.plot.pdf

./GM10847-H3K27AC_subsample-0.5e6.cc.plot.pdf

./GM10847-H3K27AC_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM10847-H3K27AC_subsample-0.5e6.tagAlign.gz 1000000 255 0.0690550144885345 100 0.03147143 1500 0.02462481 2.804286 6.489368 2 GM10847-H3K27AC_subsample-0.5e6.tagAlign.gz 1000000 255 0.069037028921033 105 0.03134132 1500 0.02455694 2.811305 6.556245 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM10847-H3K27AC_subsample-10e6.cc.plot.pdf

./GM10847-H3K27AC_subsample-10e6.cc.plot.pdf

./GM10847-H3K27AC_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM10847-H3K27AC_subsample-10e6.tagAlign.gz 20000000 265 0.421483679043772 105 0.3620281 1500 0.2824021 1.492495 1.746686 2 GM10847-H3K27AC_subsample-10e6.tagAlign.gz 20000000 265 0.421747037120996 105 0.3620505 1500 0.2825752 1.492513 1.751133 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM10847-H3K27AC_subsample-1e6.cc.plot.pdf

./GM10847-H3K27AC_subsample-1e6.cc.plot.pdf

./GM10847-H3K27AC_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM10847-H3K27AC_subsample-1e6.tagAlign.gz 2000000 260 0.100250545021841 105 0.06043281 1500 0.04731692 2.118704 4.03584 2 GM10847-H3K27AC_subsample-1e6.tagAlign.gz 2000000 245 0.100032200231566 105 0.06040399 1500 0.04714271 2.121902 3.988266 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM10847-H3K27AC_subsample-2.5e6.cc.plot.pdf

./GM10847-H3K27AC_subsample-2.5e6.cc.plot.pdf

./GM10847-H3K27AC_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM10847-H3K27AC_subsample-2.5e6.tagAlign.gz 5000000 260 0.180425841521453 105 0.1359103 1500 0.1059424 1.703057 2.485436 2 GM10847-H3K27AC_subsample-2.5e6.tagAlign.gz 5000000 260 0.180789830235493 105 0.1359006 1500 0.1057409 1.709743 2.488383 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM10847-H3K27AC_subsample-20e6.cc.plot.pdf

./GM10847-H3K27AC_subsample-20e6.cc.plot.pdf

./GM10847-H3K27AC_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM10847-H3K27AC_subsample-20e6.tagAlign.gz 40000000 265 0.568136011271718 105 0.5025274 1500 0.3944815 1.44021 1.607229 2 GM10847-H3K27AC_subsample-20e6.tagAlign.gz 40000000 270 0.567906699196435 105 0.5025747 1500 0.3945677 1.439314 1.604887 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM10847-H3K27AC_subsample-30e6.cc.plot.pdf

./GM10847-H3K27AC_subsample-30e6.cc.plot.pdf

./GM10847-H3K27AC_subsample-30e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM10847-H3K27AC_subsample-30e6.tagAlign.gz 60000000 275 0.64257676344689 105 0.5775453 1500 0.4567599 1.406815 1.538406 2 GM10847-H3K27AC_subsample-30e6.tagAlign.gz 60000000 265 0.642258448852692 105 0.5775433 1500 0.4570083 1.405354 1.536899 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM10847-H3K27AC_subsample-5e6.cc.plot.pdf

./GM10847-H3K27AC_subsample-5e6.cc.plot.pdf

./GM10847-H3K27AC_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM10847-H3K27AC_subsample-5e6.tagAlign.gz 10000000 260 0.283984246363145 105 0.2324888 1500 0.1815084 1.564579 2.010103 2 GM10847-H3K27AC_subsample-5e6.tagAlign.gz 10000000 265 0.283625716476001 105 0.2324292 1500 0.1813519 1.563952 2.002335 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM10847-H3K27AC_subsample-7.5e6.cc.plot.pdf

./GM10847-H3K27AC_subsample-7.5e6.cc.plot.pdf

./GM10847-H3K27AC_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM10847-H3K27AC_subsample-7.5e6.tagAlign.gz 15000000 265 0.361316431239469 105 0.305014 1500 0.2380098 1.518074 1.840281 2 GM10847-H3K27AC_subsample-7.5e6.tagAlign.gz 15000000 265 0.361328419254334 105 0.3048466 1500 0.2381284 1.517368 1.846572 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM10847-H3K27ME3_merged.cc.plot.pdf

./GM10847-H3K27ME3_merged.cc.plot.pdf

./GM10847-H3K27ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM10847-H3K27ME3_merged.tagAlign.gz 147202140 250 0.684187218509039 105 0.6687229 1500 0.6654397 1.028173 5.710148 2 GM10847-H3K27ME3_merged.tagAlign.gz 147202140 250 0.684187218509039 105 0.6687229 1500 0.6654397 1.028173 5.710148 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM10847-H3K27ME3_subsample-0.1e6.cc.plot.pdf

./GM10847-H3K27ME3_subsample-0.1e6.cc.plot.pdf

./GM10847-H3K27ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM10847-H3K27ME3_subsample-0.1e6.tagAlign.gz 200000 230 0.0414867649398913 105 0.003434839 1500 0.002956103 14.03427 80.4843 2 GM10847-H3K27ME3_subsample-0.1e6.tagAlign.gz 200000 235 0.0410771735125066 105 0.003244557 1500 0.002991532 13.73115 150.5214 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM10847-H3K27ME3_subsample-0.25e6.cc.plot.pdf

./GM10847-H3K27ME3_subsample-0.25e6.cc.plot.pdf

./GM10847-H3K27ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM10847-H3K27ME3_subsample-0.25e6.tagAlign.gz 500000 230 0.0449498430136146 105 0.007537177 1500 0.007092813 6.337379 85.19371 2 GM10847-H3K27ME3_subsample-0.25e6.tagAlign.gz 500000 230 0.0452477540953044 105 0.007788845 1500 0.00708082 6.390185 53.90623 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM10847-H3K27ME3_subsample-0.5e6.cc.plot.pdf

./GM10847-H3K27ME3_subsample-0.5e6.cc.plot.pdf

./GM10847-H3K27ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM10847-H3K27ME3_subsample-0.5e6.tagAlign.gz 1000000 230 0.0528008610695357 105 0.01468299 1500 0.01389463 3.800091 49.35078 2 GM10847-H3K27ME3_subsample-0.5e6.tagAlign.gz 1000000 230 0.0526436579558494 105 0.01497657 1500 0.01402805 3.752744 40.71105 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM10847-H3K27ME3_subsample-10e6.cc.plot.pdf

./GM10847-H3K27ME3_subsample-10e6.cc.plot.pdf

./GM10847-H3K27ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM10847-H3K27ME3_subsample-10e6.tagAlign.gz 20000000 235 0.250725141248812 105 0.2203746 1500 0.2186277 1.146813 18.37394 2 GM10847-H3K27ME3_subsample-10e6.tagAlign.gz 20000000 230 0.250659350183214 105 0.2203638 1500 0.2186504 1.146393 18.68104 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM10847-H3K27ME3_subsample-1e6.cc.plot.pdf

./GM10847-H3K27ME3_subsample-1e6.cc.plot.pdf

./GM10847-H3K27ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM10847-H3K27ME3_subsample-1e6.tagAlign.gz 2000000 230 0.0660978466180306 105 0.02905306 1500 0.02747376 2.405854 24.45646 2 GM10847-H3K27ME3_subsample-1e6.tagAlign.gz 2000000 230 0.0663504437640686 105 0.02900632 1500 0.02749741 2.41297 25.74916 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM10847-H3K27ME3_subsample-2.5e6.cc.plot.pdf

./GM10847-H3K27ME3_subsample-2.5e6.cc.plot.pdf

./GM10847-H3K27ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM10847-H3K27ME3_subsample-2.5e6.tagAlign.gz 5000000 230 0.104032429869201 105 0.06861188 1500 0.06600613 1.576102 14.59324 2 GM10847-H3K27ME3_subsample-2.5e6.tagAlign.gz 5000000 230 0.104123778478502 105 0.06845275 1500 0.06588491 1.580389 14.89141 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM10847-H3K27ME3_subsample-20e6.cc.plot.pdf

./GM10847-H3K27ME3_subsample-20e6.cc.plot.pdf

./GM10847-H3K27ME3_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM10847-H3K27ME3_subsample-20e6.tagAlign.gz 40000000 230 0.384756923370524 105 0.3589668 1500 0.3570213 1.077686 14.25629 2 GM10847-H3K27ME3_subsample-20e6.tagAlign.gz 40000000 240 0.384697312614167 105 0.3589149 1500 0.3570168 1.077533 14.58373 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM10847-H3K27ME3_subsample-30e6.cc.plot.pdf

./GM10847-H3K27ME3_subsample-30e6.cc.plot.pdf

./GM10847-H3K27ME3_subsample-30e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM10847-H3K27ME3_subsample-30e6.tagAlign.gz 60000000 230 0.478004074532915 105 0.4554219 1500 0.4529911 1.055217 10.29032 2 GM10847-H3K27ME3_subsample-30e6.tagAlign.gz 60000000 240 0.477941891135279 105 0.4554083 1500 0.4530549 1.054931 10.57507 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM10847-H3K27ME3_subsample-5e6.cc.plot.pdf

./GM10847-H3K27ME3_subsample-5e6.cc.plot.pdf

./GM10847-H3K27ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM10847-H3K27ME3_subsample-5e6.tagAlign.gz 10000000 235 0.159171727368412 105 0.1255547 1500 0.1235498 1.28832 17.76752 2 GM10847-H3K27ME3_subsample-5e6.tagAlign.gz 10000000 230 0.159249659509825 105 0.1255041 1500 0.1234972 1.2895 17.81451 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM10847-H3K27ME3_subsample-7.5e6.cc.plot.pdf

./GM10847-H3K27ME3_subsample-7.5e6.cc.plot.pdf

./GM10847-H3K27ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM10847-H3K27ME3_subsample-7.5e6.tagAlign.gz 15000000 230 0.207833500578083 105 0.1758539 1500 0.1740904 1.193825 19.13355 2 GM10847-H3K27ME3_subsample-7.5e6.tagAlign.gz 15000000 235 0.207634240173911 105 0.1757655 1500 0.1739617 1.193563 18.66766 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM10847-H3K36ME3_merged.cc.plot.pdf

./GM10847-H3K36ME3_merged.cc.plot.pdf

./GM10847-H3K36ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM10847-H3K36ME3_merged.tagAlign.gz 165196866 240 0.735688233931425 105 0.7203242 1500 0.7108778 1.034901 2.626438 2 GM10847-H3K36ME3_merged.tagAlign.gz 165196866 240 0.735688233931425 105 0.7203242 1500 0.7108778 1.034901 2.626438 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM10847-H3K36ME3_subsample-0.1e6.cc.plot.pdf

./GM10847-H3K36ME3_subsample-0.1e6.cc.plot.pdf

./GM10847-H3K36ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM10847-H3K36ME3_subsample-0.1e6.tagAlign.gz 200000 235 0.0403404654957094 100 0.003515985 1500 0.003459857 11.65957 657.0782 2 GM10847-H3K36ME3_subsample-0.1e6.tagAlign.gz 200000 230 0.039839305718243 95 0.003644549 1500 0.003338831 11.93211 119.3924 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM10847-H3K36ME3_subsample-0.25e6.cc.plot.pdf

./GM10847-H3K36ME3_subsample-0.25e6.cc.plot.pdf

./GM10847-H3K36ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM10847-H3K36ME3_subsample-0.25e6.tagAlign.gz 500000 240 0.04457806898285 100 0.008820558 1500 0.008510965 5.237722 116.4984 2 GM10847-H3K36ME3_subsample-0.25e6.tagAlign.gz 500000 240 0.0449234187825939 105 0.008731608 1500 0.008505281 5.281827 160.9089 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM10847-H3K36ME3_subsample-0.5e6.cc.plot.pdf

./GM10847-H3K36ME3_subsample-0.5e6.cc.plot.pdf

./GM10847-H3K36ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM10847-H3K36ME3_subsample-0.5e6.tagAlign.gz 1000000 230 0.0525798989764803 105 0.01723115 1500 0.01678742 3.132101 80.66346 2 GM10847-H3K36ME3_subsample-0.5e6.tagAlign.gz 1000000 230 0.052866405857033 105 0.01716234 1500 0.01665998 3.173257 72.07301 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM10847-H3K36ME3_subsample-10e6.cc.plot.pdf

./GM10847-H3K36ME3_subsample-10e6.cc.plot.pdf

./GM10847-H3K36ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM10847-H3K36ME3_subsample-10e6.tagAlign.gz 20000000 235 0.282459554704311 105 0.2536352 1500 0.2499106 1.130243 8.73874 2 GM10847-H3K36ME3_subsample-10e6.tagAlign.gz 20000000 235 0.282357455936759 105 0.2538957 1500 0.2498371 1.130166 8.01273 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM10847-H3K36ME3_subsample-1e6.cc.plot.pdf

./GM10847-H3K36ME3_subsample-1e6.cc.plot.pdf

./GM10847-H3K36ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM10847-H3K36ME3_subsample-1e6.tagAlign.gz 2000000 230 0.0688383075457939 105 0.03374542 1500 0.03293303 2.090251 44.19707 2 GM10847-H3K36ME3_subsample-1e6.tagAlign.gz 2000000 235 0.0690202023560871 105 0.03384002 1500 0.03299942 2.091558 42.85112 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM10847-H3K36ME3_subsample-2.5e6.cc.plot.pdf

./GM10847-H3K36ME3_subsample-2.5e6.cc.plot.pdf

./GM10847-H3K36ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM10847-H3K36ME3_subsample-2.5e6.tagAlign.gz 5000000 235 0.113887956743317 105 0.07987367 1500 0.07808715 1.458473 20.0394 2 GM10847-H3K36ME3_subsample-2.5e6.tagAlign.gz 5000000 230 0.11375330637742 105 0.07983826 1500 0.07817488 1.455113 21.38934 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM10847-H3K36ME3_subsample-20e6.cc.plot.pdf

./GM10847-H3K36ME3_subsample-20e6.cc.plot.pdf

./GM10847-H3K36ME3_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM10847-H3K36ME3_subsample-20e6.tagAlign.gz 40000000 235 0.425385943320208 105 0.4007348 1500 0.3952558 1.07623 5.499187 2 GM10847-H3K36ME3_subsample-20e6.tagAlign.gz 40000000 235 0.425336135702249 105 0.4008202 1500 0.3952511 1.076116 5.40215 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM10847-H3K36ME3_subsample-30e6.cc.plot.pdf

./GM10847-H3K36ME3_subsample-30e6.cc.plot.pdf

./GM10847-H3K36ME3_subsample-30e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM10847-H3K36ME3_subsample-30e6.tagAlign.gz 60000000 235 0.519182282545956 105 0.4975436 1500 0.4907491 1.057938 4.184739 2 GM10847-H3K36ME3_subsample-30e6.tagAlign.gz 60000000 235 0.519200841425517 105 0.4974641 1500 0.4907925 1.057883 4.258079 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM10847-H3K36ME3_subsample-5e6.cc.plot.pdf

./GM10847-H3K36ME3_subsample-5e6.cc.plot.pdf

./GM10847-H3K36ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM10847-H3K36ME3_subsample-5e6.tagAlign.gz 10000000 235 0.178799294735335 105 0.1469795 1500 0.1440354 1.241357 11.80811 2 GM10847-H3K36ME3_subsample-5e6.tagAlign.gz 10000000 235 0.178772871035571 105 0.1468943 1500 0.1440061 1.241426 12.03725 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM10847-H3K36ME3_subsample-7.5e6.cc.plot.pdf

./GM10847-H3K36ME3_subsample-7.5e6.cc.plot.pdf

./GM10847-H3K36ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM10847-H3K36ME3_subsample-7.5e6.tagAlign.gz 15000000 235 0.234406840715048 105 0.2041143 1500 0.2007041 1.167922 9.883052 2 GM10847-H3K36ME3_subsample-7.5e6.tagAlign.gz 15000000 235 0.234300544317314 105 0.2041968 1500 0.2007236 1.16728 9.667398 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM10847-H3K4ME1_merged.cc.plot.pdf

./GM10847-H3K4ME1_merged.cc.plot.pdf

./GM10847-H3K4ME1_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM10847-H3K4ME1_merged.tagAlign.gz 123325312 255 0.700553604806629 105 0.6731402 1500 0.6115469 1.145544 1.445072 1 GM10847-H3K4ME1_merged.tagAlign.gz 123325312 255 0.700553604806629 105 0.6731402 1500 0.6115469 1.145544 1.445072 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM10847-H3K4ME1_subsample-0.1e6.cc.plot.pdf

./GM10847-H3K4ME1_subsample-0.1e6.cc.plot.pdf

./GM10847-H3K4ME1_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM10847-H3K4ME1_subsample-0.1e6.tagAlign.gz 200000 230 0.0379846760072254 95 0.00396968 1500 0.003467361 10.95492 68.71589 2 GM10847-H3K4ME1_subsample-0.1e6.tagAlign.gz 200000 240 0.0382804496171096 100 0.003981018 1500 0.003585129 10.67757 87.63891 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM10847-H3K4ME1_subsample-0.25e6.cc.plot.pdf

./GM10847-H3K4ME1_subsample-0.25e6.cc.plot.pdf

./GM10847-H3K4ME1_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM10847-H3K4ME1_subsample-0.25e6.tagAlign.gz 500000 240 0.0434549194930629 105 0.00999101 1500 0.00886644 4.901056 30.75709 2 GM10847-H3K4ME1_subsample-0.25e6.tagAlign.gz 500000 250 0.0437377057903117 105 0.009940115 1500 0.008799879 4.970262 30.64088 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM10847-H3K4ME1_subsample-0.5e6.cc.plot.pdf

./GM10847-H3K4ME1_subsample-0.5e6.cc.plot.pdf

./GM10847-H3K4ME1_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM10847-H3K4ME1_subsample-0.5e6.tagAlign.gz 1000000 250 0.0525877254436588 105 0.01934352 1500 0.01708868 3.077343 15.7435 2 GM10847-H3K4ME1_subsample-0.5e6.tagAlign.gz 1000000 240 0.0530747642799044 105 0.01931532 1500 0.01733885 3.061031 18.08074 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM10847-H3K4ME1_subsample-10e6.cc.plot.pdf

./GM10847-H3K4ME1_subsample-10e6.cc.plot.pdf

./GM10847-H3K4ME1_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM10847-H3K4ME1_subsample-10e6.tagAlign.gz 20000000 250 0.305509726475527 105 0.2742898 1500 0.2487658 1.228102 2.223158 2 GM10847-H3K4ME1_subsample-10e6.tagAlign.gz 20000000 250 0.305648677477189 105 0.2745543 1500 0.2487841 1.22857 2.206596 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM10847-H3K4ME1_subsample-1e6.cc.plot.pdf

./GM10847-H3K4ME1_subsample-1e6.cc.plot.pdf

./GM10847-H3K4ME1_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM10847-H3K4ME1_subsample-1e6.tagAlign.gz 2000000 240 0.0708108150486919 105 0.03771631 1500 0.03401611 2.081685 9.943954 2 GM10847-H3K4ME1_subsample-1e6.tagAlign.gz 2000000 235 0.0710539730048466 105 0.03757046 1500 0.03393594 2.093768 10.21264 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM10847-H3K4ME1_subsample-2.5e6.cc.plot.pdf

./GM10847-H3K4ME1_subsample-2.5e6.cc.plot.pdf

./GM10847-H3K4ME1_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM10847-H3K4ME1_subsample-2.5e6.tagAlign.gz 5000000 245 0.121340691974557 105 0.08849511 1500 0.07982968 1.519995 4.790416 2 GM10847-H3K4ME1_subsample-2.5e6.tagAlign.gz 5000000 250 0.121487293120259 105 0.08841327 1500 0.07983453 1.521739 4.855347 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM10847-H3K4ME1_subsample-20e6.cc.plot.pdf

./GM10847-H3K4ME1_subsample-20e6.cc.plot.pdf

./GM10847-H3K4ME1_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM10847-H3K4ME1_subsample-20e6.tagAlign.gz 40000000 250 0.453565109911499 105 0.4237726 1500 0.3845994 1.179318 1.760533 2 GM10847-H3K4ME1_subsample-20e6.tagAlign.gz 40000000 250 0.453523249372044 105 0.4236967 1500 0.3845885 1.179243 1.762666 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM10847-H3K4ME1_subsample-30e6.cc.plot.pdf

./GM10847-H3K4ME1_subsample-30e6.cc.plot.pdf

./GM10847-H3K4ME1_subsample-30e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM10847-H3K4ME1_subsample-30e6.tagAlign.gz 60000000 250 0.54705628898186 105 0.5181519 1500 0.4705103 1.162687 1.606703 2 GM10847-H3K4ME1_subsample-30e6.tagAlign.gz 60000000 255 0.547146804915265 105 0.5181811 1500 0.4705256 1.162842 1.607813 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM10847-H3K4ME1_subsample-5e6.cc.plot.pdf

./GM10847-H3K4ME1_subsample-5e6.cc.plot.pdf

./GM10847-H3K4ME1_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM10847-H3K4ME1_subsample-5e6.tagAlign.gz 10000000 250 0.193367370015142 105 0.1612309 1500 0.145966 1.324742 3.105268 2 GM10847-H3K4ME1_subsample-5e6.tagAlign.gz 10000000 245 0.193506649173711 105 0.1615826 1500 0.1458887 1.326399 3.034163 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM10847-H3K4ME1_subsample-7.5e6.cc.plot.pdf

./GM10847-H3K4ME1_subsample-7.5e6.cc.plot.pdf

./GM10847-H3K4ME1_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM10847-H3K4ME1_subsample-7.5e6.tagAlign.gz 15000000 250 0.254017555403567 105 0.2224082 1500 0.2014215 1.261124 2.50616 2 GM10847-H3K4ME1_subsample-7.5e6.tagAlign.gz 15000000 245 0.253944495879726 105 0.2223416 1500 0.2014515 1.260574 2.512815 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM10847-H3K4ME3_merged.cc.plot.pdf

./GM10847-H3K4ME3_merged.cc.plot.pdf

./GM10847-H3K4ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM10847-H3K4ME3_merged.tagAlign.gz 120201324 255 0.791006881969854 105 0.724304 1500 0.4144479 1.90858 1.215271 1 GM10847-H3K4ME3_merged.tagAlign.gz 120201324 255 0.791006881969854 105 0.724304 1500 0.4144479 1.90858 1.215271 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM10847-H3K4ME3_subsample-0.1e6.cc.plot.pdf

./GM10847-H3K4ME3_subsample-0.1e6.cc.plot.pdf

./GM10847-H3K4ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM10847-H3K4ME3_subsample-0.1e6.tagAlign.gz 200000 235 0.05101211978047 105 0.01390832 1500 0.007787086 6.550861 7.061493 2 GM10847-H3K4ME3_subsample-0.1e6.tagAlign.gz 200000 235 0.0508270437029644 105 0.0140587 1500 0.007519963 6.758949 6.623153 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM10847-H3K4ME3_subsample-0.25e6.cc.plot.pdf

./GM10847-H3K4ME3_subsample-0.25e6.cc.plot.pdf

./GM10847-H3K4ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM10847-H3K4ME3_subsample-0.25e6.tagAlign.gz 500000 230 0.0722649331208516 105 0.03336997 1500 0.0185702 3.891447 3.628079 2 GM10847-H3K4ME3_subsample-0.25e6.tagAlign.gz 500000 245 0.0728910993203762 105 0.03416858 1500 0.01786031 4.081178 3.37441 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM10847-H3K4ME3_subsample-0.5e6.cc.plot.pdf

./GM10847-H3K4ME3_subsample-0.5e6.cc.plot.pdf

./GM10847-H3K4ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM10847-H3K4ME3_subsample-0.5e6.tagAlign.gz 1000000 230 0.105062115691213 100 0.06419647 1500 0.03481706 3.017547 2.390962 2 GM10847-H3K4ME3_subsample-0.5e6.tagAlign.gz 1000000 230 0.105249110144555 105 0.0644996 1500 0.03452639 3.048367 2.359531 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM10847-H3K4ME3_subsample-10e6.cc.plot.pdf

./GM10847-H3K4ME3_subsample-10e6.cc.plot.pdf

./GM10847-H3K4ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM10847-H3K4ME3_subsample-10e6.tagAlign.gz 20000000 250 0.582078838740005 105 0.5075901 1500 0.2719641 2.140278 1.316131 1 GM10847-H3K4ME3_subsample-10e6.tagAlign.gz 20000000 250 0.581197423232747 105 0.5072479 1500 0.272453 2.133202 1.314954 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM10847-H3K4ME3_subsample-1e6.cc.plot.pdf

./GM10847-H3K4ME3_subsample-1e6.cc.plot.pdf

./GM10847-H3K4ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM10847-H3K4ME3_subsample-1e6.tagAlign.gz 2000000 245 0.164027186781837 105 0.118971 1500 0.0636858 2.575569 1.814978 2 GM10847-H3K4ME3_subsample-1e6.tagAlign.gz 2000000 235 0.164383175495452 105 0.1195 1500 0.06373032 2.579356 1.804795 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM10847-H3K4ME3_subsample-2.5e6.cc.plot.pdf

./GM10847-H3K4ME3_subsample-2.5e6.cc.plot.pdf

./GM10847-H3K4ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM10847-H3K4ME3_subsample-2.5e6.tagAlign.gz 5000000 250 0.296765371703554 105 0.2421092 1500 0.1301013 2.281033 1.487967 1 GM10847-H3K4ME3_subsample-2.5e6.tagAlign.gz 5000000 240 0.297336604641471 105 0.2431333 1500 0.1302725 2.282421 1.480267 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM10847-H3K4ME3_subsample-20e6.cc.plot.pdf

./GM10847-H3K4ME3_subsample-20e6.cc.plot.pdf

./GM10847-H3K4ME3_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM10847-H3K4ME3_subsample-20e6.tagAlign.gz 40000000 250 0.703890863535123 105 0.6226843 1500 0.3348155 2.102325 1.282096 1 GM10847-H3K4ME3_subsample-20e6.tagAlign.gz 40000000 250 0.703988032023472 105 0.6228269 1500 0.3349638 2.101684 1.281944 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM10847-H3K4ME3_subsample-30e6.cc.plot.pdf

./GM10847-H3K4ME3_subsample-30e6.cc.plot.pdf

./GM10847-H3K4ME3_subsample-30e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM10847-H3K4ME3_subsample-30e6.tagAlign.gz 60000000 245 0.755369392895503 105 0.6753799 1500 0.3659711 2.064014 1.258524 1 GM10847-H3K4ME3_subsample-30e6.tagAlign.gz 60000000 250 0.755224348294904 105 0.6751528 1500 0.3660479 2.063184 1.259043 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM10847-H3K4ME3_subsample-5e6.cc.plot.pdf

./GM10847-H3K4ME3_subsample-5e6.cc.plot.pdf

./GM10847-H3K4ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM10847-H3K4ME3_subsample-5e6.tagAlign.gz 10000000 245 0.435448515696673 105 0.371334 1500 0.199329 2.184571 1.372748 1 GM10847-H3K4ME3_subsample-5e6.tagAlign.gz 10000000 240 0.43589311708602 105 0.3718527 1500 0.199547 2.184414 1.371667 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM10847-H3K4ME3_subsample-7.5e6.cc.plot.pdf

./GM10847-H3K4ME3_subsample-7.5e6.cc.plot.pdf

./GM10847-H3K4ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM10847-H3K4ME3_subsample-7.5e6.tagAlign.gz 15000000 240 0.522458567120999 105 0.4517307 1500 0.2425391 2.154121 1.338101 1 GM10847-H3K4ME3_subsample-7.5e6.tagAlign.gz 15000000 250 0.52245388682589 105 0.4517506 1500 0.2425048 2.154407 1.337896 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-H3K27AC_merged.cc.plot.pdf

./GM12878-H3K27AC_merged.cc.plot.pdf

./GM12878-H3K27AC_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-H3K27AC_merged.tagAlign.gz 326166840 300 0.834503003917834 105 0.7594291 1500 0.5972855 1.397159 1.463008 1 GM12878-H3K27AC_merged.tagAlign.gz 326166840 300 0.834503003917834 105 0.7594291 1500 0.5972855 1.397159 1.463008 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-H3K27AC_subsample-0.1e6.cc.plot.pdf

./GM12878-H3K27AC_subsample-0.1e6.cc.plot.pdf

./GM12878-H3K27AC_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-H3K27AC_subsample-0.1e6.tagAlign.gz 200000 300 0.0435206347477372 105 0.008662127 1500 0.006850763 6.35267 20.24433 2 GM12878-H3K27AC_subsample-0.1e6.tagAlign.gz 200000 295 0.0438582670671847 105 0.009142175 1500 0.006739423 6.507719 15.44847 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-H3K27AC_subsample-0.25e6.cc.plot.pdf

./GM12878-H3K27AC_subsample-0.25e6.cc.plot.pdf

./GM12878-H3K27AC_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-H3K27AC_subsample-0.25e6.tagAlign.gz 500000 285 0.0581210538424899 100 0.02202715 1500 0.01713492 3.391964 8.377808 2 GM12878-H3K27AC_subsample-0.25e6.tagAlign.gz 500000 285 0.0579872156943832 105 0.02182034 1500 0.01625955 3.566347 7.503919 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-H3K27AC_subsample-0.5e6.cc.plot.pdf

./GM12878-H3K27AC_subsample-0.5e6.cc.plot.pdf

./GM12878-H3K27AC_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-H3K27AC_subsample-0.5e6.tagAlign.gz 1000000 295 0.0811396126454158 105 0.04291514 1500 0.03175877 2.554873 4.426247 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-H3K27AC_subsample-10e6.cc.plot.pdf

./GM12878-H3K27AC_subsample-10e6.cc.plot.pdf

./GM12878-H3K27AC_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-H3K27AC_subsample-10e6.tagAlign.gz 20000000 300 0.510254350453935 105 0.427655 1500 0.3220622 1.584335 1.782243 2 GM12878-H3K27AC_subsample-10e6.tagAlign.gz 20000000 300 0.510126729908795 105 0.4276385 1500 0.322151 1.583502 1.781971 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-H3K27AC_subsample-15e6.cc.plot.pdf

./GM12878-H3K27AC_subsample-15e6.cc.plot.pdf

./GM12878-H3K27AC_subsample-15e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-H3K27AC_subsample-15e6.tagAlign.gz 30000000 300 0.599019468223816 105 0.5088823 1500 0.3837715 1.560875 1.720459 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-H3K27AC_subsample-1e6.cc.plot.pdf

./GM12878-H3K27AC_subsample-1e6.cc.plot.pdf

./GM12878-H3K27AC_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-H3K27AC_subsample-1e6.tagAlign.gz 2000000 285 0.123898875510181 105 0.08106369 1500 0.06092898 2.033497 3.12743 2 GM12878-H3K27AC_subsample-1e6.tagAlign.gz 2000000 295 0.124033877783669 105 0.08088427 1500 0.06109003 2.030346 3.179907 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-H3K27AC_subsample-2.5e6.cc.plot.pdf

./GM12878-H3K27AC_subsample-2.5e6.cc.plot.pdf

./GM12878-H3K27AC_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-H3K27AC_subsample-2.5e6.tagAlign.gz 5000000 290 0.229789720376889 105 0.1758543 1500 0.1323796 1.735839 2.240616 2 GM12878-H3K27AC_subsample-2.5e6.tagAlign.gz 5000000 295 0.230392787017222 105 0.1763704 1500 0.1328391 1.734375 2.241 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-H3K27AC_subsample-20e6.cc.plot.pdf

./GM12878-H3K27AC_subsample-20e6.cc.plot.pdf

./GM12878-H3K27AC_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-H3K27AC_subsample-20e6.tagAlign.gz 40000000 300 0.656209995723847 105 0.5634384 1500 0.4250038 1.54401 1.670148 2 GM12878-H3K27AC_subsample-20e6.tagAlign.gz 40000000 300 0.656084666673983 105 0.5632405 1500 0.4248022 1.544447 1.670654 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-H3K27AC_subsample-25e6.cc.plot.pdf

./GM12878-H3K27AC_subsample-25e6.cc.plot.pdf

./GM12878-H3K27AC_subsample-25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-H3K27AC_subsample-25e6.tagAlign.gz 50000000 300 0.694923300500402 105 0.6017045 1500 0.454506 1.528964 1.633286 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-H3K27AC_subsample-30e6.cc.plot.pdf

./GM12878-H3K27AC_subsample-30e6.cc.plot.pdf

./GM12878-H3K27AC_subsample-30e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-H3K27AC_subsample-30e6.tagAlign.gz 60000000 295 0.722881338251216 105 0.6299394 1500 0.4763981 1.517389 1.605322 2 GM12878-H3K27AC_subsample-30e6.tagAlign.gz 60000000 300 0.722889223863158 105 0.6299241 1500 0.4766331 1.516658 1.606461 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-H3K27AC_subsample-5e6.cc.plot.pdf

./GM12878-H3K27AC_subsample-5e6.cc.plot.pdf

./GM12878-H3K27AC_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-H3K27AC_subsample-5e6.tagAlign.gz 10000000 300 0.357041098698035 105 0.2900829 1500 0.2184926 1.634111 1.935298 2 GM12878-H3K27AC_subsample-5e6.tagAlign.gz 10000000 295 0.356449762759735 105 0.2896613 1500 0.2184129 1.632 1.937402 2 GM12878-H3K27AC_subsample-5e6.tagAlign.gz 10000000 295 0.356449762759735 105 0.2896613 1500 0.2184129 1.632 1.937402 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-H3K27AC_subsample-7.5e6.cc.plot.pdf

./GM12878-H3K27AC_subsample-7.5e6.cc.plot.pdf

./GM12878-H3K27AC_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-H3K27AC_subsample-7.5e6.tagAlign.gz 15000000 295 0.445114974886284 105 0.3692169 1500 0.2783215 1.599284 1.835004 2 GM12878-H3K27AC_subsample-7.5e6.tagAlign.gz 15000000 295 0.445140281097088 105 0.3689238 1500 0.2776861 1.603034 1.835361 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-H3K27ME3_merged.cc.plot.pdf

./GM12878-H3K27ME3_merged.cc.plot.pdf

./GM12878-H3K27ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-H3K27ME3_merged.tagAlign.gz 262545194 315 0.796903175428106 105 0.7863112 1500 0.7790246 1.02295 2.453625 2 GM12878-H3K27ME3_merged.tagAlign.gz 262545194 315 0.796903175428106 105 0.7863112 1500 0.7790246 1.02295 2.453625 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-H3K27ME3_subsample-0.1e6.cc.plot.pdf

./GM12878-H3K27ME3_subsample-0.1e6.cc.plot.pdf

./GM12878-H3K27ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-H3K27ME3_subsample-0.1e6.tagAlign.gz 200000 320 0.0353602792682672 100 0.003204891 1500 0.003034586 11.65242 189.8104 2 GM12878-H3K27ME3_subsample-0.1e6.tagAlign.gz 200000 310 0.0353845581979304 105 0.003247613 1500 0.003060903 11.56017 173.1223 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-H3K27ME3_subsample-0.25e6.cc.plot.pdf

./GM12878-H3K27ME3_subsample-0.25e6.cc.plot.pdf

./GM12878-H3K27ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-H3K27ME3_subsample-0.25e6.tagAlign.gz 500000 315 0.0388478971383241 100 0.007544225 1500 0.007210877 5.387403 94.90681 2 GM12878-H3K27ME3_subsample-0.25e6.tagAlign.gz 500000 315 0.0392452990855683 105 0.007637646 1500 0.007220879 5.434976 76.84013 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-H3K27ME3_subsample-0.5e6.cc.plot.pdf

./GM12878-H3K27ME3_subsample-0.5e6.cc.plot.pdf

./GM12878-H3K27ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-H3K27ME3_subsample-0.5e6.tagAlign.gz 1000000 325 0.0461303224735198 105 0.01485892 1500 0.01454456 3.171655 100.4771 2 GM12878-H3K27ME3_subsample-0.5e6.tagAlign.gz 1000000 305 0.0459613656949895 105 0.01488261 1500 0.01451646 3.166156 85.87963 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-H3K27ME3_subsample-10e6.cc.plot.pdf

./GM12878-H3K27ME3_subsample-10e6.cc.plot.pdf

./GM12878-H3K27ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-H3K27ME3_subsample-10e6.tagAlign.gz 20000000 315 0.254078263955272 105 0.2286622 1500 0.2257737 1.125367 9.799152 2 GM12878-H3K27ME3_subsample-10e6.tagAlign.gz 20000000 315 0.254196717584914 105 0.2286612 1500 0.2259954 1.124787 10.57882 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-H3K27ME3_subsample-15e6.cc.plot.pdf

./GM12878-H3K27ME3_subsample-15e6.cc.plot.pdf

./GM12878-H3K27ME3_subsample-15e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-H3K27ME3_subsample-15e6.tagAlign.gz 30000000 320 0.330171796863502 105 0.3067765 1500 0.3036023 1.087514 8.370571 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-H3K27ME3_subsample-1e6.cc.plot.pdf

./GM12878-H3K27ME3_subsample-1e6.cc.plot.pdf

./GM12878-H3K27ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-H3K27ME3_subsample-1e6.tagAlign.gz 2000000 315 0.0600711990326932 105 0.02916664 1500 0.02867148 2.095155 63.41393 2 GM12878-H3K27ME3_subsample-1e6.tagAlign.gz 2000000 310 0.060009197066375 105 0.02911054 1500 0.02859282 2.098751 60.68261 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-H3K27ME3_subsample-2.5e6.cc.plot.pdf

./GM12878-H3K27ME3_subsample-2.5e6.cc.plot.pdf

./GM12878-H3K27ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-H3K27ME3_subsample-2.5e6.tagAlign.gz 5000000 315 0.09936729320126 105 0.06948779 1500 0.06840855 1.452557 28.68581 2 GM12878-H3K27ME3_subsample-2.5e6.tagAlign.gz 5000000 315 0.0995980249697887 105 0.06963943 1500 0.068469 1.454644 26.59622 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-H3K27ME3_subsample-20e6.cc.plot.pdf

./GM12878-H3K27ME3_subsample-20e6.cc.plot.pdf

./GM12878-H3K27ME3_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-H3K27ME3_subsample-20e6.tagAlign.gz 40000000 315 0.392068827463832 105 0.3703146 1500 0.3666156 1.069427 6.881141 2 GM12878-H3K27ME3_subsample-20e6.tagAlign.gz 40000000 315 0.392018030074406 105 0.3702819 1500 0.3666261 1.069258 6.945747 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-H3K27ME3_subsample-25e6.cc.plot.pdf

./GM12878-H3K27ME3_subsample-25e6.cc.plot.pdf

./GM12878-H3K27ME3_subsample-25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-H3K27ME3_subsample-25e6.tagAlign.gz 50000000 315 0.443247589568195 105 0.422974 1500 0.418754 1.058492 5.80408 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-H3K27ME3_subsample-30e6.cc.plot.pdf

./GM12878-H3K27ME3_subsample-30e6.cc.plot.pdf

./GM12878-H3K27ME3_subsample-30e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-H3K27ME3_subsample-30e6.tagAlign.gz 60000000 315 0.486482357310421 105 0.4673831 1500 0.4627298 1.051331 5.104468 2 GM12878-H3K27ME3_subsample-30e6.tagAlign.gz 60000000 315 0.486513162799223 105 0.4674006 1500 0.4627784 1.051288 5.134888 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-H3K27ME3_subsample-5e6.cc.plot.pdf

./GM12878-H3K27ME3_subsample-5e6.cc.plot.pdf

./GM12878-H3K27ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-H3K27ME3_subsample-5e6.tagAlign.gz 10000000 315 0.157804730567975 105 0.1297005 1500 0.1278188 1.234597 15.93579 2 GM12878-H3K27ME3_subsample-5e6.tagAlign.gz 10000000 315 0.157631326292066 105 0.1296343 1500 0.1278382 1.233054 16.58777 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-H3K27ME3_subsample-7.5e6.cc.plot.pdf

./GM12878-H3K27ME3_subsample-7.5e6.cc.plot.pdf

./GM12878-H3K27ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-H3K27ME3_subsample-7.5e6.tagAlign.gz 15000000 315 0.208978120897263 105 0.1823361 1500 0.1799169 1.161526 12.01281 2 GM12878-H3K27ME3_subsample-7.5e6.tagAlign.gz 15000000 315 0.209044328718875 100 0.1822361 1500 0.1798295 1.162458 12.13972 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-H3K36ME3_merged.cc.plot.pdf

./GM12878-H3K36ME3_merged.cc.plot.pdf

./GM12878-H3K36ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-H3K36ME3_merged.tagAlign.gz 121235830 295 0.706406226203431 105 0.6874507 1500 0.6695273 1.055082 2.057584 2 GM12878-H3K36ME3_merged.tagAlign.gz 121235830 295 0.706406226203431 105 0.6874507 1500 0.6695273 1.055082 2.057584 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-H3K36ME3_subsample-0.1e6.cc.plot.pdf

./GM12878-H3K36ME3_subsample-0.1e6.cc.plot.pdf

./GM12878-H3K36ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-H3K36ME3_subsample-0.1e6.tagAlign.gz 200000 295 0.0417702428187541 105 0.003992618 1500 0.003951273 10.57134 914.7312 2 GM12878-H3K36ME3_subsample-0.1e6.tagAlign.gz 200000 295 0.041121983085074 100 0.004054197 1500 0.003900408 10.543 242.0295 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-H3K36ME3_subsample-0.25e6.cc.plot.pdf

./GM12878-H3K36ME3_subsample-0.25e6.cc.plot.pdf

./GM12878-H3K36ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-H3K36ME3_subsample-0.25e6.tagAlign.gz 500000 285 0.0473781937917926 100 0.01007218 1500 0.009751214 4.858697 117.2286 2 GM12878-H3K36ME3_subsample-0.25e6.tagAlign.gz 500000 295 0.0471248131530959 100 0.009864243 1500 0.009626616 4.895262 157.8027 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-H3K36ME3_subsample-0.5e6.cc.plot.pdf

./GM12878-H3K36ME3_subsample-0.5e6.cc.plot.pdf

./GM12878-H3K36ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-H3K36ME3_subsample-0.5e6.tagAlign.gz 1000000 285 0.0565452136573307 105 0.01955732 1500 0.01856997 3.044982 38.46168 2 GM12878-H3K36ME3_subsample-0.5e6.tagAlign.gz 1000000 285 0.0562117420763731 95 0.0194984 1500 0.01895938 2.964851 69.11202 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-H3K36ME3_subsample-10e6.cc.plot.pdf

./GM12878-H3K36ME3_subsample-10e6.cc.plot.pdf

./GM12878-H3K36ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-H3K36ME3_subsample-10e6.tagAlign.gz 20000000 295 0.30947922945681 105 0.2795372 1500 0.271889 1.138256 4.914938 2 GM12878-H3K36ME3_subsample-10e6.tagAlign.gz 20000000 290 0.309541172916914 100 0.2795766 1500 0.2721783 1.137273 5.050221 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-H3K36ME3_subsample-15e6.cc.plot.pdf

./GM12878-H3K36ME3_subsample-15e6.cc.plot.pdf

./GM12878-H3K36ME3_subsample-15e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-H3K36ME3_subsample-15e6.tagAlign.gz 30000000 290 0.393639027340563 105 0.3660098 1500 0.3562262 1.105025 3.824031 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-H3K36ME3_subsample-1e6.cc.plot.pdf

./GM12878-H3K36ME3_subsample-1e6.cc.plot.pdf

./GM12878-H3K36ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-H3K36ME3_subsample-1e6.tagAlign.gz 2000000 290 0.0744767998371919 105 0.03820834 1500 0.03713446 2.005598 34.77322 2 GM12878-H3K36ME3_subsample-1e6.tagAlign.gz 2000000 290 0.0747078234425874 105 0.03820644 1500 0.03697991 2.020227 30.75995 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-H3K36ME3_subsample-2.5e6.cc.plot.pdf

./GM12878-H3K36ME3_subsample-2.5e6.cc.plot.pdf

./GM12878-H3K36ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-H3K36ME3_subsample-2.5e6.tagAlign.gz 5000000 285 0.124341833608115 100 0.089654 1500 0.0871787 1.426287 15.01362 2 GM12878-H3K36ME3_subsample-2.5e6.tagAlign.gz 5000000 290 0.124501892952736 105 0.08951928 1500 0.08713316 1.428869 15.66091 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-H3K36ME3_subsample-20e6.cc.plot.pdf

./GM12878-H3K36ME3_subsample-20e6.cc.plot.pdf

./GM12878-H3K36ME3_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-H3K36ME3_subsample-20e6.tagAlign.gz 40000000 290 0.458925128483482 105 0.4331753 1500 0.421419 1.088999 3.190312 2 GM12878-H3K36ME3_subsample-20e6.tagAlign.gz 40000000 290 0.458804743039137 105 0.4329839 1500 0.4214222 1.088706 3.233318 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-H3K36ME3_subsample-25e6.cc.plot.pdf

./GM12878-H3K36ME3_subsample-25e6.cc.plot.pdf

./GM12878-H3K36ME3_subsample-25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-H3K36ME3_subsample-25e6.tagAlign.gz 50000000 295 0.511080961335783 105 0.4867474 1500 0.4737129 1.078883 2.866861 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-H3K36ME3_subsample-30e6.cc.plot.pdf

./GM12878-H3K36ME3_subsample-30e6.cc.plot.pdf

./GM12878-H3K36ME3_subsample-30e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-H3K36ME3_subsample-30e6.tagAlign.gz 60000000 295 0.553766431859139 105 0.5304879 1500 0.5162903 1.072587 2.639607 2 GM12878-H3K36ME3_subsample-30e6.tagAlign.gz 60000000 295 0.553746914530274 105 0.530506 1500 0.5163781 1.072367 2.64504 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-H3K36ME3_subsample-5e6.cc.plot.pdf

./GM12878-H3K36ME3_subsample-5e6.cc.plot.pdf

./GM12878-H3K36ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-H3K36ME3_subsample-5e6.tagAlign.gz 10000000 290 0.196696248153836 105 0.1636837 1500 0.1594263 1.233775 8.754259 2 GM12878-H3K36ME3_subsample-5e6.tagAlign.gz 10000000 290 0.196705098632781 105 0.1639459 1500 0.1592875 1.234906 8.032282 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-H3K36ME3_subsample-7.5e6.cc.plot.pdf

./GM12878-H3K36ME3_subsample-7.5e6.cc.plot.pdf

./GM12878-H3K36ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-H3K36ME3_subsample-7.5e6.tagAlign.gz 15000000 290 0.257393553842489 105 0.2263434 1500 0.2198901 1.170555 5.811495 2 GM12878-H3K36ME3_subsample-7.5e6.tagAlign.gz 15000000 300 0.257363983171524 105 0.2261196 1500 0.2199872 1.169904 6.094992 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-H3K4ME1_merged.cc.plot.pdf

./GM12878-H3K4ME1_merged.cc.plot.pdf

./GM12878-H3K4ME1_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-H3K4ME1_merged.tagAlign.gz 169901252 300 0.777993921564455 105 0.7411815 1500 0.6641852 1.171351 1.478106 1 GM12878-H3K4ME1_merged.tagAlign.gz 169901252 300 0.777993921564455 105 0.7411815 1500 0.6641852 1.171351 1.478106 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-H3K4ME1_subsample-0.1e6.cc.plot.pdf

./GM12878-H3K4ME1_subsample-0.1e6.cc.plot.pdf

./GM12878-H3K4ME1_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-H3K4ME1_subsample-0.1e6.tagAlign.gz 200000 305 0.0390498223673761 95 0.004288322 1500 0.003799533 10.27753 72.1176 2 GM12878-H3K4ME1_subsample-0.1e6.tagAlign.gz 200000 295 0.0390189637204698 95 0.004120568 1500 0.003579144 10.90176 65.45662 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-H3K4ME1_subsample-0.25e6.cc.plot.pdf

./GM12878-H3K4ME1_subsample-0.25e6.cc.plot.pdf

./GM12878-H3K4ME1_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-H3K4ME1_subsample-0.25e6.tagAlign.gz 500000 295 0.0451883009514248 100 0.01042585 1500 0.009409418 4.802455 35.20059 2 GM12878-H3K4ME1_subsample-0.25e6.tagAlign.gz 500000 295 0.0455669123144169 105 0.01039016 1500 0.009286638 4.906718 32.8768 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-H3K4ME1_subsample-0.5e6.cc.plot.pdf

./GM12878-H3K4ME1_subsample-0.5e6.cc.plot.pdf

./GM12878-H3K4ME1_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-H3K4ME1_subsample-0.5e6.tagAlign.gz 1000000 300 0.0553161658450965 105 0.02053132 1500 0.01824385 3.032045 16.20669 2 GM12878-H3K4ME1_subsample-0.5e6.tagAlign.gz 1000000 300 0.055430761867546 105 0.02064263 1500 0.01852701 2.991889 17.44351 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-H3K4ME1_subsample-10e6.cc.plot.pdf

./GM12878-H3K4ME1_subsample-10e6.cc.plot.pdf

./GM12878-H3K4ME1_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-H3K4ME1_subsample-10e6.tagAlign.gz 20000000 300 0.324460454623933 105 0.2885943 1500 0.2582845 1.256214 2.183318 2 GM12878-H3K4ME1_subsample-10e6.tagAlign.gz 20000000 300 0.324693629479701 105 0.2888971 1500 0.2586026 1.25557 2.18162 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-H3K4ME1_subsample-15e6.cc.plot.pdf

./GM12878-H3K4ME1_subsample-15e6.cc.plot.pdf

./GM12878-H3K4ME1_subsample-15e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-H3K4ME1_subsample-15e6.tagAlign.gz 30000000 300 0.411259992645729 105 0.3750176 1500 0.3358473 1.224545 1.925252 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-H3K4ME1_subsample-1e6.cc.plot.pdf

./GM12878-H3K4ME1_subsample-1e6.cc.plot.pdf

./GM12878-H3K4ME1_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-H3K4ME1_subsample-1e6.tagAlign.gz 2000000 300 0.0749850803505642 105 0.04039135 1500 0.03589969 2.088739 8.701764 2 GM12878-H3K4ME1_subsample-1e6.tagAlign.gz 2000000 300 0.0749475488349379 105 0.04019234 1500 0.03592877 2.086004 9.151671 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-H3K4ME1_subsample-2.5e6.cc.plot.pdf

./GM12878-H3K4ME1_subsample-2.5e6.cc.plot.pdf

./GM12878-H3K4ME1_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-H3K4ME1_subsample-2.5e6.tagAlign.gz 5000000 305 0.129217589880836 105 0.09415843 1500 0.08420458 1.534567 4.522169 2 GM12878-H3K4ME1_subsample-2.5e6.tagAlign.gz 5000000 295 0.129275887572784 105 0.09440727 1500 0.0842912 1.533682 4.446855 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-H3K4ME1_subsample-20e6.cc.plot.pdf

./GM12878-H3K4ME1_subsample-20e6.cc.plot.pdf

./GM12878-H3K4ME1_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-H3K4ME1_subsample-20e6.tagAlign.gz 40000000 305 0.477241218803214 105 0.4408181 1500 0.3947969 1.208827 1.791444 2 GM12878-H3K4ME1_subsample-20e6.tagAlign.gz 40000000 305 0.47726686923956 105 0.4409861 1500 0.3947054 1.209172 1.78393 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-H3K4ME1_subsample-25e6.cc.plot.pdf

./GM12878-H3K4ME1_subsample-25e6.cc.plot.pdf

./GM12878-H3K4ME1_subsample-25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-H3K4ME1_subsample-25e6.tagAlign.gz 50000000 300 0.529431418504549 105 0.4928524 1500 0.4413799 1.199492 1.710652 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-H3K4ME1_subsample-30e6.cc.plot.pdf

./GM12878-H3K4ME1_subsample-30e6.cc.plot.pdf

./GM12878-H3K4ME1_subsample-30e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-H3K4ME1_subsample-30e6.tagAlign.gz 60000000 300 0.5717286089963 105 0.5350302 1500 0.4792372 1.192997 1.65776 2 GM12878-H3K4ME1_subsample-30e6.tagAlign.gz 60000000 300 0.571784819098442 105 0.5350948 1500 0.479335 1.192871 1.658002 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-H3K4ME1_subsample-5e6.cc.plot.pdf

./GM12878-H3K4ME1_subsample-5e6.cc.plot.pdf

./GM12878-H3K4ME1_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-H3K4ME1_subsample-5e6.tagAlign.gz 10000000 300 0.206316416448258 105 0.1715055 1500 0.1532104 1.346622 2.902735 2 GM12878-H3K4ME1_subsample-5e6.tagAlign.gz 10000000 300 0.206314673892905 105 0.1710732 1500 0.1531243 1.347367 2.96344 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-H3K4ME1_subsample-7.5e6.cc.plot.pdf

./GM12878-H3K4ME1_subsample-7.5e6.cc.plot.pdf

./GM12878-H3K4ME1_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-H3K4ME1_subsample-7.5e6.tagAlign.gz 15000000 305 0.270561648160736 105 0.2350537 1500 0.2104419 1.285683 2.442723 2 GM12878-H3K4ME1_subsample-7.5e6.tagAlign.gz 15000000 295 0.27038803890989 105 0.2349715 1500 0.2101469 1.286662 2.426669 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-H3K4ME3_merged.cc.plot.pdf

./GM12878-H3K4ME3_merged.cc.plot.pdf

./GM12878-H3K4ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-H3K4ME3_merged.tagAlign.gz 166905330 320 0.883446828856825 105 0.7665556 1500 0.4648541 1.900482 1.38744 1 GM12878-H3K4ME3_merged.tagAlign.gz 166905330 320 0.883446828856825 105 0.7665556 1500 0.4648541 1.900482 1.38744 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-H3K4ME3_subsample-0.1e6.cc.plot.pdf

./GM12878-H3K4ME3_subsample-0.1e6.cc.plot.pdf

./GM12878-H3K4ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-H3K4ME3_subsample-0.1e6.tagAlign.gz 200000 305 0.0533687780714608 95 0.01508736 1500 0.008974448 5.946747 7.262383 2 GM12878-H3K4ME3_subsample-0.1e6.tagAlign.gz 200000 300 0.0551587088560485 105 0.01506634 1500 0.009654075 5.713516 8.407692 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-H3K4ME3_subsample-0.25e6.cc.plot.pdf

./GM12878-H3K4ME3_subsample-0.25e6.cc.plot.pdf

./GM12878-H3K4ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-H3K4ME3_subsample-0.25e6.tagAlign.gz 500000 300 0.0784386156923441 105 0.03612746 1500 0.02207535 3.553223 4.011016 2 GM12878-H3K4ME3_subsample-0.25e6.tagAlign.gz 500000 305 0.0787298805771867 105 0.03664371 1500 0.02154907 3.653516 3.788154 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-H3K4ME3_subsample-0.5e6.cc.plot.pdf

./GM12878-H3K4ME3_subsample-0.5e6.cc.plot.pdf

./GM12878-H3K4ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-H3K4ME3_subsample-0.5e6.tagAlign.gz 1000000 310 0.116841501078778 105 0.06974203 1500 0.04168751 2.802794 2.678855 2 GM12878-H3K4ME3_subsample-0.5e6.tagAlign.gz 1000000 310 0.116575808383903 105 0.06965607 1500 0.04173413 2.793297 2.680389 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-H3K4ME3_subsample-10e6.cc.plot.pdf

./GM12878-H3K4ME3_subsample-10e6.cc.plot.pdf

./GM12878-H3K4ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-H3K4ME3_subsample-10e6.tagAlign.gz 20000000 320 0.643942004633615 105 0.523853 1500 0.3116087 2.066509 1.565805 2 GM12878-H3K4ME3_subsample-10e6.tagAlign.gz 20000000 320 0.643865508186246 105 0.5239056 1500 0.3112749 2.068479 1.56417 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-H3K4ME3_subsample-1e6.cc.plot.pdf

./GM12878-H3K4ME3_subsample-1e6.cc.plot.pdf

./GM12878-H3K4ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-H3K4ME3_subsample-1e6.tagAlign.gz 2000000 310 0.184864056399926 105 0.1279392 1500 0.07607153 2.430135 2.097503 2 GM12878-H3K4ME3_subsample-1e6.tagAlign.gz 2000000 310 0.184254030810029 105 0.1280923 1500 0.07615598 2.41943 2.081359 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-H3K4ME3_subsample-2.5e6.cc.plot.pdf

./GM12878-H3K4ME3_subsample-2.5e6.cc.plot.pdf

./GM12878-H3K4ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-H3K4ME3_subsample-2.5e6.tagAlign.gz 5000000 315 0.334522224327566 105 0.2573384 1500 0.1531364 2.184472 1.740713 2 GM12878-H3K4ME3_subsample-2.5e6.tagAlign.gz 5000000 320 0.334161878991959 105 0.2581806 1500 0.1533651 2.178866 1.724905 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-H3K4ME3_subsample-20e6.cc.plot.pdf

./GM12878-H3K4ME3_subsample-20e6.cc.plot.pdf

./GM12878-H3K4ME3_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-H3K4ME3_subsample-20e6.tagAlign.gz 40000000 320 0.77041147527769 105 0.6345871 1500 0.3773965 2.041385 1.528108 2 GM12878-H3K4ME3_subsample-20e6.tagAlign.gz 40000000 320 0.770427050960696 105 0.6345486 1500 0.3773541 2.041656 1.52831 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-H3K4ME3_subsample-30e6.cc.plot.pdf

./GM12878-H3K4ME3_subsample-30e6.cc.plot.pdf

./GM12878-H3K4ME3_subsample-30e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-H3K4ME3_subsample-30e6.tagAlign.gz 60000000 320 0.823820634273955 105 0.6841547 1500 0.4070294 2.023983 1.503981 2 GM12878-H3K4ME3_subsample-30e6.tagAlign.gz 60000000 320 0.823705059188873 105 0.6842384 1500 0.4069365 2.024161 1.502941 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-H3K4ME3_subsample-5e6.cc.plot.pdf

./GM12878-H3K4ME3_subsample-5e6.cc.plot.pdf

./GM12878-H3K4ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-H3K4ME3_subsample-5e6.tagAlign.gz 10000000 320 0.487715647164461 105 0.3892644 1500 0.231529 2.106499 1.624154 2 GM12878-H3K4ME3_subsample-5e6.tagAlign.gz 10000000 315 0.48744286575004 105 0.3891001 1500 0.2316349 2.104358 1.624537 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-H3K4ME3_subsample-7.5e6.cc.plot.pdf

./GM12878-H3K4ME3_subsample-7.5e6.cc.plot.pdf

./GM12878-H3K4ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-H3K4ME3_subsample-7.5e6.tagAlign.gz 15000000 320 0.580899413732828 105 0.4694076 1500 0.2791141 2.081226 1.585894 2 GM12878-H3K4ME3_subsample-7.5e6.tagAlign.gz 15000000 320 0.581377952144469 105 0.4697647 1500 0.2790351 2.08353 1.585191 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-H3K9ME3_merged.cc.plot.pdf

./GM12878-H3K9ME3_merged.cc.plot.pdf

./GM12878-H3K9ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-H3K9ME3_merged.tagAlign.gz 216101732 295 0.759601394779537 105 0.7471835 1500 0.7329057 1.036425 1.869736 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-H3K9ME3_subsample-0.1e6.cc.plot.pdf

./GM12878-H3K9ME3_subsample-0.1e6.cc.plot.pdf

./GM12878-H3K9ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-H3K9ME3_subsample-0.1e6.tagAlign.gz 200000 285 0.0341085786659237 100 0.004593801 1500 0.003318577 10.27807 24.14477 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-H3K9ME3_subsample-0.25e6.cc.plot.pdf

./GM12878-H3K9ME3_subsample-0.25e6.cc.plot.pdf

./GM12878-H3K9ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-H3K9ME3_subsample-0.25e6.tagAlign.gz 500000 305 0.0400969835673952 100 0.01061007 1500 0.007597568 5.277607 10.78817 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-H3K9ME3_subsample-0.5e6.cc.plot.pdf

./GM12878-H3K9ME3_subsample-0.5e6.cc.plot.pdf

./GM12878-H3K9ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-H3K9ME3_subsample-0.5e6.tagAlign.gz 1000000 290 0.0508753120447053 105 0.02139814 1500 0.01527603 3.330401 5.814875 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-H3K9ME3_subsample-10e6.cc.plot.pdf

./GM12878-H3K9ME3_subsample-10e6.cc.plot.pdf

./GM12878-H3K9ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-H3K9ME3_subsample-10e6.tagAlign.gz 20000000 300 0.249948361063266 105 0.2261963 1500 0.2203636 1.134254 5.072171 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-H3K9ME3_subsample-15e6.cc.plot.pdf

./GM12878-H3K9ME3_subsample-15e6.cc.plot.pdf

./GM12878-H3K9ME3_subsample-15e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-H3K9ME3_subsample-15e6.tagAlign.gz 30000000 305 0.325234421933834 105 0.3030271 1500 0.2962247 1.097931 4.264634 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-H3K9ME3_subsample-1e6.cc.plot.pdf

./GM12878-H3K9ME3_subsample-1e6.cc.plot.pdf

./GM12878-H3K9ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-H3K9ME3_subsample-1e6.tagAlign.gz 2000000 295 0.0655243626215972 105 0.03702806 1500 0.02970544 2.205803 4.891543 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-H3K9ME3_subsample-2.5e6.cc.plot.pdf

./GM12878-H3K9ME3_subsample-2.5e6.cc.plot.pdf

./GM12878-H3K9ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-H3K9ME3_subsample-2.5e6.tagAlign.gz 5000000 305 0.102035823633188 105 0.0744124 1500 0.0695518 1.467048 6.68312 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-H3K9ME3_subsample-20e6.cc.plot.pdf

./GM12878-H3K9ME3_subsample-20e6.cc.plot.pdf

./GM12878-H3K9ME3_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-H3K9ME3_subsample-20e6.tagAlign.gz 40000000 295 0.386537485807375 105 0.3657133 1500 0.3579466 1.079875 3.68122 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-H3K9ME3_subsample-25e6.cc.plot.pdf

./GM12878-H3K9ME3_subsample-25e6.cc.plot.pdf

./GM12878-H3K9ME3_subsample-25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-H3K9ME3_subsample-25e6.tagAlign.gz 50000000 295 0.437435263776649 105 0.4178024 1500 0.4091729 1.069072 3.275085 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-H3K9ME3_subsample-30e6.cc.plot.pdf

./GM12878-H3K9ME3_subsample-30e6.cc.plot.pdf

./GM12878-H3K9ME3_subsample-30e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-H3K9ME3_subsample-30e6.tagAlign.gz 60000000 295 0.480377147124673 105 0.4616555 1500 0.4522903 1.062099 2.999075 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-H3K9ME3_subsample-5e6.cc.plot.pdf

./GM12878-H3K9ME3_subsample-5e6.cc.plot.pdf

./GM12878-H3K9ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-H3K9ME3_subsample-5e6.tagAlign.gz 10000000 310 0.15554404043151 105 0.1295491 1500 0.1251805 1.242558 6.950371 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM12878-H3K9ME3_subsample-7.5e6.cc.plot.pdf

./GM12878-H3K9ME3_subsample-7.5e6.cc.plot.pdf

./GM12878-H3K9ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM12878-H3K9ME3_subsample-7.5e6.tagAlign.gz 15000000 295 0.205430338307694 105 0.1804124 1500 0.1752938 1.17192 5.887693 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18505-H3K27AC_merged.cc.plot.pdf

./GM18505-H3K27AC_merged.cc.plot.pdf

./GM18505-H3K27AC_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18505-H3K27AC_merged.tagAlign.gz 129305994 265 0.758525214000103 105 0.6955399 1500 0.5479911 1.384193 1.426878 1 GM18505-H3K27AC_merged.tagAlign.gz 129305994 265 0.758525214000103 105 0.6955399 1500 0.5479911 1.384193 1.426878 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18505-H3K27AC_subsample-0.1e6.cc.plot.pdf

./GM18505-H3K27AC_subsample-0.1e6.cc.plot.pdf

./GM18505-H3K27AC_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18505-H3K27AC_subsample-0.1e6.tagAlign.gz 200000 235 0.045398864803121 100 0.007707235 1500 0.005666397 8.011946 19.4687 2 GM18505-H3K27AC_subsample-0.1e6.tagAlign.gz 200000 240 0.044752162850759 105 0.007535776 1500 0.005773115 7.751823 22.11376 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18505-H3K27AC_subsample-0.25e6.cc.plot.pdf

./GM18505-H3K27AC_subsample-0.25e6.cc.plot.pdf

./GM18505-H3K27AC_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18505-H3K27AC_subsample-0.25e6.tagAlign.gz 500000 245 0.0561780464022094 105 0.01887936 1500 0.01427393 3.935709 9.098851 2 GM18505-H3K27AC_subsample-0.25e6.tagAlign.gz 500000 235 0.056883570318646 95 0.01871824 1500 0.01439676 3.951136 9.831551 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18505-H3K27AC_subsample-0.5e6.cc.plot.pdf

./GM18505-H3K27AC_subsample-0.5e6.cc.plot.pdf

./GM18505-H3K27AC_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18505-H3K27AC_subsample-0.5e6.tagAlign.gz 1000000 240 0.0756134199483494 105 0.0363449 1500 0.02800195 2.700291 5.706792 2 GM18505-H3K27AC_subsample-0.5e6.tagAlign.gz 1000000 235 0.0754111650959158 105 0.03654554 1500 0.02736315 2.755938 5.23263 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18505-H3K27AC_subsample-10e6.cc.plot.pdf

./GM18505-H3K27AC_subsample-10e6.cc.plot.pdf

./GM18505-H3K27AC_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18505-H3K27AC_subsample-10e6.tagAlign.gz 20000000 255 0.460982639237286 105 0.3945443 1500 0.2990073 1.54171 1.695421 2 GM18505-H3K27AC_subsample-10e6.tagAlign.gz 20000000 255 0.460933244729077 105 0.394809 1500 0.2993096 1.539988 1.692404 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18505-H3K27AC_subsample-1e6.cc.plot.pdf

./GM18505-H3K27AC_subsample-1e6.cc.plot.pdf

./GM18505-H3K27AC_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18505-H3K27AC_subsample-1e6.tagAlign.gz 2000000 240 0.111653053493342 105 0.06991455 1500 0.05284187 2.112965 3.444754 2 GM18505-H3K27AC_subsample-1e6.tagAlign.gz 2000000 240 0.111900130793632 105 0.07024601 1500 0.05285916 2.116949 3.395726 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18505-H3K27AC_subsample-2.5e6.cc.plot.pdf

./GM18505-H3K27AC_subsample-2.5e6.cc.plot.pdf

./GM18505-H3K27AC_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18505-H3K27AC_subsample-2.5e6.tagAlign.gz 5000000 255 0.203364506950435 105 0.1549944 1500 0.1168545 1.740323 2.268229 2 GM18505-H3K27AC_subsample-2.5e6.tagAlign.gz 5000000 245 0.203462681029523 105 0.1549607 1500 0.1172119 1.735853 2.284864 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18505-H3K27AC_subsample-20e6.cc.plot.pdf

./GM18505-H3K27AC_subsample-20e6.cc.plot.pdf

./GM18505-H3K27AC_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18505-H3K27AC_subsample-20e6.tagAlign.gz 40000000 255 0.605387910225523 105 0.5328024 1500 0.4056685 1.492322 1.570937 2 GM18505-H3K27AC_subsample-20e6.tagAlign.gz 40000000 255 0.605176036114052 105 0.5328681 1500 0.4058217 1.491236 1.569146 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18505-H3K27AC_subsample-30e6.cc.plot.pdf

./GM18505-H3K27AC_subsample-30e6.cc.plot.pdf

./GM18505-H3K27AC_subsample-30e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18505-H3K27AC_subsample-30e6.tagAlign.gz 60000000 260 0.673838447714048 105 0.6022572 1500 0.4621935 1.457914 1.511062 2 GM18505-H3K27AC_subsample-30e6.tagAlign.gz 60000000 265 0.673978473566206 105 0.6024256 1500 0.4622383 1.458076 1.510409 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18505-H3K27AC_subsample-5e6.cc.plot.pdf

./GM18505-H3K27AC_subsample-5e6.cc.plot.pdf

./GM18505-H3K27AC_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18505-H3K27AC_subsample-5e6.tagAlign.gz 10000000 250 0.316119234993726 105 0.2601185 1500 0.1968521 1.605872 1.885156 2 GM18505-H3K27AC_subsample-5e6.tagAlign.gz 10000000 250 0.316268836708384 105 0.2600792 1500 0.1968502 1.606648 1.888669 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18505-H3K27AC_subsample-7.5e6.cc.plot.pdf

./GM18505-H3K27AC_subsample-7.5e6.cc.plot.pdf

./GM18505-H3K27AC_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18505-H3K27AC_subsample-7.5e6.tagAlign.gz 15000000 255 0.398845909987459 105 0.3365065 1500 0.2546966 1.565965 1.762003 2 GM18505-H3K27AC_subsample-7.5e6.tagAlign.gz 15000000 250 0.398413273587913 105 0.3361238 1500 0.2545131 1.565394 1.763251 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18505-H3K27ME3_merged.cc.plot.pdf

./GM18505-H3K27ME3_merged.cc.plot.pdf

./GM18505-H3K27ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18505-H3K27ME3_merged.tagAlign.gz 164534100 230 0.706460016131088 105 0.6921836 1500 0.6889595 1.025401 5.428115 2 GM18505-H3K27ME3_merged.tagAlign.gz 164534100 230 0.706460016131088 105 0.6921836 1500 0.6889595 1.025401 5.428115 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18505-H3K27ME3_subsample-0.1e6.cc.plot.pdf

./GM18505-H3K27ME3_subsample-0.1e6.cc.plot.pdf

./GM18505-H3K27ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18505-H3K27ME3_subsample-0.1e6.tagAlign.gz 200000 235 0.0410088164711281 100 0.00322851 1500 0.00310261 13.21752 301.0817 2 GM18505-H3K27ME3_subsample-0.1e6.tagAlign.gz 200000 225 0.0415333523230684 105 0.003364692 1500 0.002996056 13.86267 104.5405 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18505-H3K27ME3_subsample-0.25e6.cc.plot.pdf

./GM18505-H3K27ME3_subsample-0.25e6.cc.plot.pdf

./GM18505-H3K27ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18505-H3K27ME3_subsample-0.25e6.tagAlign.gz 500000 220 0.0445849463215318 105 0.00743825 1500 0.007039054 6.33394 94.05393 2 GM18505-H3K27ME3_subsample-0.25e6.tagAlign.gz 500000 225 0.0449965539665137 105 0.007598295 1500 0.006961461 6.463665 59.72536 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18505-H3K27ME3_subsample-0.5e6.cc.plot.pdf

./GM18505-H3K27ME3_subsample-0.5e6.cc.plot.pdf

./GM18505-H3K27ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18505-H3K27ME3_subsample-0.5e6.tagAlign.gz 1000000 220 0.0519561455677977 105 0.01467163 1500 0.01384619 3.752378 46.1696 2 GM18505-H3K27ME3_subsample-0.5e6.tagAlign.gz 1000000 230 0.0518216594018664 95 0.01463139 1500 0.01388452 3.732333 50.79498 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18505-H3K27ME3_subsample-10e6.cc.plot.pdf

./GM18505-H3K27ME3_subsample-10e6.cc.plot.pdf

./GM18505-H3K27ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18505-H3K27ME3_subsample-10e6.tagAlign.gz 20000000 230 0.249980314197804 105 0.2199018 1500 0.2181059 1.146142 17.74835 2 GM18505-H3K27ME3_subsample-10e6.tagAlign.gz 20000000 225 0.250074248515519 105 0.2199708 1500 0.2181053 1.146576 17.13665 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18505-H3K27ME3_subsample-1e6.cc.plot.pdf

./GM18505-H3K27ME3_subsample-1e6.cc.plot.pdf

./GM18505-H3K27ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18505-H3K27ME3_subsample-1e6.tagAlign.gz 2000000 225 0.0654947305457385 105 0.02872522 1500 0.02742166 2.388431 29.20703 2 GM18505-H3K27ME3_subsample-1e6.tagAlign.gz 2000000 225 0.0656813158551143 105 0.02858897 1500 0.02742213 2.395194 32.78876 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18505-H3K27ME3_subsample-2.5e6.cc.plot.pdf

./GM18505-H3K27ME3_subsample-2.5e6.cc.plot.pdf

./GM18505-H3K27ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18505-H3K27ME3_subsample-2.5e6.tagAlign.gz 5000000 225 0.102753771563758 95 0.06759269 1500 0.0656971 1.564053 19.54887 2 GM18505-H3K27ME3_subsample-2.5e6.tagAlign.gz 5000000 230 0.103084753957838 105 0.06771865 1500 0.06571611 1.568637 18.66061 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18505-H3K27ME3_subsample-20e6.cc.plot.pdf

./GM18505-H3K27ME3_subsample-20e6.cc.plot.pdf

./GM18505-H3K27ME3_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18505-H3K27ME3_subsample-20e6.tagAlign.gz 40000000 225 0.383725607399515 100 0.3582309 1500 0.3563818 1.076726 14.78754 2 GM18505-H3K27ME3_subsample-20e6.tagAlign.gz 40000000 230 0.383773705089164 105 0.3583629 1500 0.3564169 1.076755 14.0574 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18505-H3K27ME3_subsample-30e6.cc.plot.pdf

./GM18505-H3K27ME3_subsample-30e6.cc.plot.pdf

./GM18505-H3K27ME3_subsample-30e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18505-H3K27ME3_subsample-30e6.tagAlign.gz 60000000 225 0.477056278362373 105 0.4548335 1500 0.4525744 1.054095 10.83714 2 GM18505-H3K27ME3_subsample-30e6.tagAlign.gz 60000000 225 0.477026678159064 105 0.4548954 1500 0.4525728 1.054033 10.52864 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18505-H3K27ME3_subsample-5e6.cc.plot.pdf

./GM18505-H3K27ME3_subsample-5e6.cc.plot.pdf

./GM18505-H3K27ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18505-H3K27ME3_subsample-5e6.tagAlign.gz 10000000 225 0.158376879358486 105 0.1250435 1500 0.1230201 1.287406 17.47392 2 GM18505-H3K27ME3_subsample-5e6.tagAlign.gz 10000000 225 0.15832692933224 100 0.1250236 1500 0.1230655 1.286526 18.00821 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18505-H3K27ME3_subsample-7.5e6.cc.plot.pdf

./GM18505-H3K27ME3_subsample-7.5e6.cc.plot.pdf

./GM18505-H3K27ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18505-H3K27ME3_subsample-7.5e6.tagAlign.gz 15000000 225 0.206973784588222 105 0.175453 1500 0.1734712 1.193131 16.90515 2 GM18505-H3K27ME3_subsample-7.5e6.tagAlign.gz 15000000 225 0.207088076817914 105 0.175541 1500 0.1734672 1.193817 16.21201 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18505-H3K36ME3_merged.cc.plot.pdf

./GM18505-H3K36ME3_merged.cc.plot.pdf

./GM18505-H3K36ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18505-H3K36ME3_merged.tagAlign.gz 176925894 245 0.751701134605867 105 0.7357907 1500 0.7266542 1.034469 2.741416 2 GM18505-H3K36ME3_merged.tagAlign.gz 176925894 245 0.751701134605867 105 0.7357907 1500 0.7266542 1.034469 2.741416 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18505-H3K36ME3_subsample-0.1e6.cc.plot.pdf

./GM18505-H3K36ME3_subsample-0.1e6.cc.plot.pdf

./GM18505-H3K36ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18505-H3K36ME3_subsample-0.1e6.tagAlign.gz 200000 240 0.0411011298328216 100 0.00358166 1500 0.003508726 11.71398 515.4264 2 GM18505-H3K36ME3_subsample-0.1e6.tagAlign.gz 200000 245 0.041307613794924 105 0.003865287 1500 0.003573931 11.55803 129.5108 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18505-H3K36ME3_subsample-0.25e6.cc.plot.pdf

./GM18505-H3K36ME3_subsample-0.25e6.cc.plot.pdf

./GM18505-H3K36ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18505-H3K36ME3_subsample-0.25e6.tagAlign.gz 500000 225 0.0457755158909208 95 0.008876013 1500 0.008574575 5.338517 123.4116 2 GM18505-H3K36ME3_subsample-0.25e6.tagAlign.gz 500000 220 0.0456134204124025 105 0.009208978 1500 0.008657863 5.268439 67.05599 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18505-H3K36ME3_subsample-0.5e6.cc.plot.pdf

./GM18505-H3K36ME3_subsample-0.5e6.cc.plot.pdf

./GM18505-H3K36ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18505-H3K36ME3_subsample-0.5e6.tagAlign.gz 1000000 230 0.0539014342795346 100 0.01752614 1500 0.01703565 3.164037 75.16188 2 GM18505-H3K36ME3_subsample-0.5e6.tagAlign.gz 1000000 245 0.0537070838952747 105 0.01747657 1500 0.016984 3.162216 74.55378 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18505-H3K36ME3_subsample-10e6.cc.plot.pdf

./GM18505-H3K36ME3_subsample-10e6.cc.plot.pdf

./GM18505-H3K36ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18505-H3K36ME3_subsample-10e6.tagAlign.gz 20000000 245 0.286085209840365 105 0.2566544 1500 0.2529945 1.130796 9.041238 2 GM18505-H3K36ME3_subsample-10e6.tagAlign.gz 20000000 245 0.286126573874127 105 0.2567416 1500 0.2529555 1.131134 8.761303 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18505-H3K36ME3_subsample-1e6.cc.plot.pdf

./GM18505-H3K36ME3_subsample-1e6.cc.plot.pdf

./GM18505-H3K36ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18505-H3K36ME3_subsample-1e6.tagAlign.gz 2000000 245 0.070040118715512 105 0.03424452 1500 0.03354658 2.087846 52.28755 2 GM18505-H3K36ME3_subsample-1e6.tagAlign.gz 2000000 225 0.0701591664712049 105 0.03430381 1500 0.0333211 2.105548 37.48627 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18505-H3K36ME3_subsample-2.5e6.cc.plot.pdf

./GM18505-H3K36ME3_subsample-2.5e6.cc.plot.pdf

./GM18505-H3K36ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18505-H3K36ME3_subsample-2.5e6.tagAlign.gz 5000000 245 0.115323213161467 105 0.0809045 1500 0.07950314 1.450549 25.56096 2 GM18505-H3K36ME3_subsample-2.5e6.tagAlign.gz 5000000 245 0.115278790965045 95 0.08071896 1500 0.0792543 1.454543 24.59576 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18505-H3K36ME3_subsample-20e6.cc.plot.pdf

./GM18505-H3K36ME3_subsample-20e6.cc.plot.pdf

./GM18505-H3K36ME3_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18505-H3K36ME3_subsample-20e6.tagAlign.gz 40000000 245 0.429737357234841 105 0.4043168 1500 0.3990433 1.076919 5.820421 2 GM18505-H3K36ME3_subsample-20e6.tagAlign.gz 40000000 245 0.429629632316837 105 0.4042537 1500 0.3990015 1.076762 5.831457 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18505-H3K36ME3_subsample-30e6.cc.plot.pdf

./GM18505-H3K36ME3_subsample-30e6.cc.plot.pdf

./GM18505-H3K36ME3_subsample-30e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18505-H3K36ME3_subsample-30e6.tagAlign.gz 60000000 245 0.523518865837312 105 0.5010728 1500 0.4946482 1.058366 4.493748 2 GM18505-H3K36ME3_subsample-30e6.tagAlign.gz 60000000 245 0.523583723656571 105 0.5010632 1500 0.4947272 1.058328 4.554365 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18505-H3K36ME3_subsample-5e6.cc.plot.pdf

./GM18505-H3K36ME3_subsample-5e6.cc.plot.pdf

./GM18505-H3K36ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18505-H3K36ME3_subsample-5e6.tagAlign.gz 10000000 245 0.181106949575546 95 0.1485317 1500 0.1462284 1.238521 15.14302 2 GM18505-H3K36ME3_subsample-5e6.tagAlign.gz 10000000 245 0.181093886373146 105 0.1487769 1500 0.1461471 1.239121 13.28852 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18505-H3K36ME3_subsample-7.5e6.cc.plot.pdf

./GM18505-H3K36ME3_subsample-7.5e6.cc.plot.pdf

./GM18505-H3K36ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18505-H3K36ME3_subsample-7.5e6.tagAlign.gz 15000000 245 0.237408347530905 105 0.2066992 1500 0.2033492 1.167491 10.16672 2 GM18505-H3K36ME3_subsample-7.5e6.tagAlign.gz 15000000 240 0.237510156300126 105 0.2065319 1500 0.2033786 1.167823 10.82396 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18505-H3K4ME1_merged.cc.plot.pdf

./GM18505-H3K4ME1_merged.cc.plot.pdf

./GM18505-H3K4ME1_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18505-H3K4ME1_merged.tagAlign.gz 129992382 245 0.705454091391264 105 0.679287 1500 0.6207084 1.136531 1.4467 1 GM18505-H3K4ME1_merged.tagAlign.gz 129992382 245 0.705454091391264 105 0.679287 1500 0.6207084 1.136531 1.4467 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18505-H3K4ME1_subsample-0.1e6.cc.plot.pdf

./GM18505-H3K4ME1_subsample-0.1e6.cc.plot.pdf

./GM18505-H3K4ME1_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18505-H3K4ME1_subsample-0.1e6.tagAlign.gz 200000 230 0.0393885660896476 105 0.003968422 1500 0.003410489 11.54924 64.48452 2 GM18505-H3K4ME1_subsample-0.1e6.tagAlign.gz 200000 235 0.0389853871014658 100 0.003988961 1500 0.003251851 11.98867 48.47794 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18505-H3K4ME1_subsample-0.25e6.cc.plot.pdf

./GM18505-H3K4ME1_subsample-0.25e6.cc.plot.pdf

./GM18505-H3K4ME1_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18505-H3K4ME1_subsample-0.25e6.tagAlign.gz 500000 240 0.0444820575073999 105 0.009556259 1500 0.008467505 5.253266 33.07869 2 GM18505-H3K4ME1_subsample-0.25e6.tagAlign.gz 500000 230 0.044768034661168 100 0.009436768 1500 0.008375266 5.345267 34.28421 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18505-H3K4ME1_subsample-0.5e6.cc.plot.pdf

./GM18505-H3K4ME1_subsample-0.5e6.cc.plot.pdf

./GM18505-H3K4ME1_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18505-H3K4ME1_subsample-0.5e6.tagAlign.gz 1000000 235 0.0531338579066875 105 0.01862018 1500 0.01685048 3.153255 20.50255 2 GM18505-H3K4ME1_subsample-0.5e6.tagAlign.gz 1000000 230 0.0539498961394871 105 0.0187175 1500 0.01666561 3.237199 18.17071 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18505-H3K4ME1_subsample-10e6.cc.plot.pdf

./GM18505-H3K4ME1_subsample-10e6.cc.plot.pdf

./GM18505-H3K4ME1_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18505-H3K4ME1_subsample-10e6.tagAlign.gz 20000000 230 0.298594058384396 105 0.267233 1500 0.243729 1.225107 2.334281 2 GM18505-H3K4ME1_subsample-10e6.tagAlign.gz 20000000 235 0.298648417486344 105 0.2671825 1500 0.2436244 1.225856 2.335673 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18505-H3K4ME1_subsample-1e6.cc.plot.pdf

./GM18505-H3K4ME1_subsample-1e6.cc.plot.pdf

./GM18505-H3K4ME1_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18505-H3K4ME1_subsample-1e6.tagAlign.gz 2000000 235 0.0714108461501098 105 0.0363914 1500 0.03283278 2.174986 10.84074 2 GM18505-H3K4ME1_subsample-1e6.tagAlign.gz 2000000 230 0.0710200692828753 100 0.03633972 1500 0.0326955 2.172167 10.51652 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18505-H3K4ME1_subsample-2.5e6.cc.plot.pdf

./GM18505-H3K4ME1_subsample-2.5e6.cc.plot.pdf

./GM18505-H3K4ME1_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18505-H3K4ME1_subsample-2.5e6.tagAlign.gz 5000000 235 0.119227007997643 100 0.08537844 1500 0.07764452 1.535549 5.376637 2 GM18505-H3K4ME1_subsample-2.5e6.tagAlign.gz 5000000 230 0.119052175004437 105 0.08550534 1500 0.07739611 1.538219 5.13687 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18505-H3K4ME1_subsample-20e6.cc.plot.pdf

./GM18505-H3K4ME1_subsample-20e6.cc.plot.pdf

./GM18505-H3K4ME1_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18505-H3K4ME1_subsample-20e6.tagAlign.gz 40000000 235 0.445188491995929 105 0.4157431 1500 0.3796358 1.172673 1.815495 2 GM18505-H3K4ME1_subsample-20e6.tagAlign.gz 40000000 235 0.445354342783104 105 0.4157802 1500 0.3796147 1.173175 1.817744 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18505-H3K4ME1_subsample-30e6.cc.plot.pdf

./GM18505-H3K4ME1_subsample-30e6.cc.plot.pdf

./GM18505-H3K4ME1_subsample-30e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18505-H3K4ME1_subsample-30e6.tagAlign.gz 60000000 235 0.539113548752597 105 0.5108772 1500 0.4666516 1.155281 1.638463 2 GM18505-H3K4ME1_subsample-30e6.tagAlign.gz 60000000 235 0.539138502545417 105 0.5108341 1500 0.4666272 1.155395 1.640269 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18505-H3K4ME1_subsample-5e6.cc.plot.pdf

./GM18505-H3K4ME1_subsample-5e6.cc.plot.pdf

./GM18505-H3K4ME1_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18505-H3K4ME1_subsample-5e6.tagAlign.gz 10000000 235 0.189030496979085 105 0.1562628 1500 0.1420523 1.33071 3.305891 2 GM18505-H3K4ME1_subsample-5e6.tagAlign.gz 10000000 235 0.188945873505264 105 0.1563048 1500 0.1421204 1.329478 3.301182 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18505-H3K4ME1_subsample-7.5e6.cc.plot.pdf

./GM18505-H3K4ME1_subsample-7.5e6.cc.plot.pdf

./GM18505-H3K4ME1_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18505-H3K4ME1_subsample-7.5e6.tagAlign.gz 15000000 235 0.248003439753825 105 0.2158702 1500 0.1965912 1.261519 2.666751 2 GM18505-H3K4ME1_subsample-7.5e6.tagAlign.gz 15000000 230 0.248040265591252 105 0.2159543 1500 0.1967912 1.260423 2.674372 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18505-H3K4ME3_merged.cc.plot.pdf

./GM18505-H3K4ME3_merged.cc.plot.pdf

./GM18505-H3K4ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18505-H3K4ME3_merged.tagAlign.gz 143402704 260 0.805272699869062 105 0.736599 1500 0.4166692 1.932643 1.214652 1 GM18505-H3K4ME3_merged.tagAlign.gz 143402704 260 0.805272699869062 105 0.736599 1500 0.4166692 1.932643 1.214652 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18505-H3K4ME3_subsample-0.1e6.cc.plot.pdf

./GM18505-H3K4ME3_subsample-0.1e6.cc.plot.pdf

./GM18505-H3K4ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18505-H3K4ME3_subsample-0.1e6.tagAlign.gz 200000 245 0.0524592476570084 105 0.01455348 1500 0.007533657 6.963318 6.399818 2 GM18505-H3K4ME3_subsample-0.1e6.tagAlign.gz 200000 230 0.0526665465787429 95 0.01464487 1500 0.007833635 6.72313 6.582204 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18505-H3K4ME3_subsample-0.25e6.cc.plot.pdf

./GM18505-H3K4ME3_subsample-0.25e6.cc.plot.pdf

./GM18505-H3K4ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18505-H3K4ME3_subsample-0.25e6.tagAlign.gz 500000 245 0.0752591711260132 105 0.03540811 1500 0.0187346 4.017121 3.390082 2 GM18505-H3K4ME3_subsample-0.25e6.tagAlign.gz 500000 230 0.0747345326175251 105 0.03560283 1500 0.01829996 4.083864 3.261572 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18505-H3K4ME3_subsample-0.5e6.cc.plot.pdf

./GM18505-H3K4ME3_subsample-0.5e6.cc.plot.pdf

./GM18505-H3K4ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18505-H3K4ME3_subsample-0.5e6.tagAlign.gz 1000000 255 0.109945063932829 100 0.06813421 1500 0.03499485 3.14175 2.261668 2 GM18505-H3K4ME3_subsample-0.5e6.tagAlign.gz 1000000 245 0.110964270364212 95 0.06813043 1500 0.03509857 3.161504 2.296744 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18505-H3K4ME3_subsample-10e6.cc.plot.pdf

./GM18505-H3K4ME3_subsample-10e6.cc.plot.pdf

./GM18505-H3K4ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18505-H3K4ME3_subsample-10e6.tagAlign.gz 20000000 255 0.60440169696663 105 0.526315 1500 0.2709894 2.230352 1.305832 1 GM18505-H3K4ME3_subsample-10e6.tagAlign.gz 20000000 260 0.60405665241313 105 0.5261192 1500 0.2708846 2.229941 1.305356 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18505-H3K4ME3_subsample-1e6.cc.plot.pdf

./GM18505-H3K4ME3_subsample-1e6.cc.plot.pdf

./GM18505-H3K4ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18505-H3K4ME3_subsample-1e6.tagAlign.gz 2000000 250 0.172196272692179 105 0.1249808 1500 0.06440765 2.673537 1.77948 2 GM18505-H3K4ME3_subsample-1e6.tagAlign.gz 2000000 235 0.17095543697487 105 0.1255391 1500 0.06461341 2.64582 1.745439 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18505-H3K4ME3_subsample-2.5e6.cc.plot.pdf

./GM18505-H3K4ME3_subsample-2.5e6.cc.plot.pdf

./GM18505-H3K4ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18505-H3K4ME3_subsample-2.5e6.tagAlign.gz 5000000 250 0.310834846993422 105 0.2547191 1500 0.1310504 2.371873 1.453758 1 GM18505-H3K4ME3_subsample-2.5e6.tagAlign.gz 5000000 255 0.310610625644468 105 0.2541125 1500 0.1311076 2.369128 1.459316 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18505-H3K4ME3_subsample-20e6.cc.plot.pdf

./GM18505-H3K4ME3_subsample-20e6.cc.plot.pdf

./GM18505-H3K4ME3_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18505-H3K4ME3_subsample-20e6.tagAlign.gz 40000000 255 0.728719588720252 105 0.6427427 1500 0.3314321 2.198699 1.276177 1 GM18505-H3K4ME3_subsample-20e6.tagAlign.gz 40000000 265 0.728929249964332 105 0.6428065 1500 0.3314435 2.199256 1.276599 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18505-H3K4ME3_subsample-30e6.cc.plot.pdf

./GM18505-H3K4ME3_subsample-30e6.cc.plot.pdf

./GM18505-H3K4ME3_subsample-30e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18505-H3K4ME3_subsample-30e6.tagAlign.gz 60000000 255 0.780161085177113 105 0.6948607 1500 0.3608862 2.161792 1.25541 1 GM18505-H3K4ME3_subsample-30e6.tagAlign.gz 60000000 255 0.780333009563347 105 0.6949106 1500 0.3607159 2.16329 1.255607 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18505-H3K4ME3_subsample-5e6.cc.plot.pdf

./GM18505-H3K4ME3_subsample-5e6.cc.plot.pdf

./GM18505-H3K4ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18505-H3K4ME3_subsample-5e6.tagAlign.gz 10000000 250 0.454801832709529 105 0.3870204 1500 0.1996595 2.277887 1.361769 1 GM18505-H3K4ME3_subsample-5e6.tagAlign.gz 10000000 255 0.454913989723554 105 0.3873685 1500 0.1996846 2.278163 1.35989 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18505-H3K4ME3_subsample-7.5e6.cc.plot.pdf

./GM18505-H3K4ME3_subsample-7.5e6.cc.plot.pdf

./GM18505-H3K4ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18505-H3K4ME3_subsample-7.5e6.tagAlign.gz 15000000 250 0.543920739022742 105 0.4701578 1500 0.2421386 2.24632 1.323495 1 GM18505-H3K4ME3_subsample-7.5e6.tagAlign.gz 15000000 255 0.543569543828266 105 0.4701884 1500 0.2420382 2.2458 1.321635 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18526-H3K27AC_merged.cc.plot.pdf

./GM18526-H3K27AC_merged.cc.plot.pdf

./GM18526-H3K27AC_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18526-H3K27AC_merged.tagAlign.gz 142360082 260 0.767767141562637 105 0.7071182 1500 0.5576971 1.376674 1.405893 1 GM18526-H3K27AC_merged.tagAlign.gz 142360082 260 0.767767141562637 105 0.7071182 1500 0.5576971 1.376674 1.405893 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18526-H3K27AC_subsample-0.1e6.cc.plot.pdf

./GM18526-H3K27AC_subsample-0.1e6.cc.plot.pdf

./GM18526-H3K27AC_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18526-H3K27AC_subsample-0.1e6.tagAlign.gz 200000 230 0.0444288693536948 105 0.007992604 1500 0.00570384 7.789291 16.91962 2 GM18526-H3K27AC_subsample-0.1e6.tagAlign.gz 200000 245 0.0444393895915229 95 0.007351185 1500 0.00563643 7.884315 22.62886 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18526-H3K27AC_subsample-0.25e6.cc.plot.pdf

./GM18526-H3K27AC_subsample-0.25e6.cc.plot.pdf

./GM18526-H3K27AC_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18526-H3K27AC_subsample-0.25e6.tagAlign.gz 500000 240 0.0556798356357825 95 0.01850771 1500 0.01382108 4.028617 8.931518 2 GM18526-H3K27AC_subsample-0.25e6.tagAlign.gz 500000 235 0.0553651110766356 100 0.01835998 1500 0.0138424 3.999677 9.191345 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18526-H3K27AC_subsample-0.5e6.cc.plot.pdf

./GM18526-H3K27AC_subsample-0.5e6.cc.plot.pdf

./GM18526-H3K27AC_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18526-H3K27AC_subsample-0.5e6.tagAlign.gz 1000000 235 0.074314075147824 105 0.03583252 1500 0.02711621 2.740577 5.414892 2 GM18526-H3K27AC_subsample-0.5e6.tagAlign.gz 1000000 240 0.0742865854512021 100 0.03594025 1500 0.02732593 2.718538 5.451463 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18526-H3K27AC_subsample-10e6.cc.plot.pdf

./GM18526-H3K27AC_subsample-10e6.cc.plot.pdf

./GM18526-H3K27AC_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18526-H3K27AC_subsample-10e6.tagAlign.gz 20000000 250 0.454188405343817 105 0.3906775 1500 0.2973097 1.527661 1.680223 2 GM18526-H3K27AC_subsample-10e6.tagAlign.gz 20000000 255 0.453956748117344 105 0.3903774 1500 0.2974325 1.526252 1.684054 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18526-H3K27AC_subsample-1e6.cc.plot.pdf

./GM18526-H3K27AC_subsample-1e6.cc.plot.pdf

./GM18526-H3K27AC_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18526-H3K27AC_subsample-1e6.tagAlign.gz 2000000 245 0.108946486067516 105 0.06858006 1500 0.05228772 2.083596 3.477633 2 GM18526-H3K27AC_subsample-1e6.tagAlign.gz 2000000 240 0.109175600039591 105 0.06893198 1500 0.05206671 2.096841 3.386184 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18526-H3K27AC_subsample-2.5e6.cc.plot.pdf

./GM18526-H3K27AC_subsample-2.5e6.cc.plot.pdf

./GM18526-H3K27AC_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18526-H3K27AC_subsample-2.5e6.tagAlign.gz 5000000 245 0.198602070610664 105 0.1515952 1500 0.1156204 1.717707 2.306664 2 GM18526-H3K27AC_subsample-2.5e6.tagAlign.gz 5000000 250 0.198665495380646 105 0.1522945 1500 0.1156259 1.718174 2.264596 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18526-H3K27AC_subsample-20e6.cc.plot.pdf

./GM18526-H3K27AC_subsample-20e6.cc.plot.pdf

./GM18526-H3K27AC_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18526-H3K27AC_subsample-20e6.tagAlign.gz 40000000 260 0.600698461072531 105 0.5303306 1500 0.4053944 1.481763 1.563231 2 GM18526-H3K27AC_subsample-20e6.tagAlign.gz 40000000 260 0.600512105657885 105 0.5304091 1500 0.4054474 1.48111 1.560996 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18526-H3K27AC_subsample-30e6.cc.plot.pdf

./GM18526-H3K27AC_subsample-30e6.cc.plot.pdf

./GM18526-H3K27AC_subsample-30e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18526-H3K27AC_subsample-30e6.tagAlign.gz 60000000 260 0.672107811086144 105 0.6020562 1500 0.4625778 1.452962 1.50224 2 GM18526-H3K27AC_subsample-30e6.tagAlign.gz 60000000 260 0.671839482844861 105 0.6017451 1500 0.4623636 1.453054 1.502896 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18526-H3K27AC_subsample-5e6.cc.plot.pdf

./GM18526-H3K27AC_subsample-5e6.cc.plot.pdf

./GM18526-H3K27AC_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18526-H3K27AC_subsample-5e6.tagAlign.gz 10000000 250 0.310061053369645 105 0.2563625 1500 0.1952395 1.588106 1.878533 2 GM18526-H3K27AC_subsample-5e6.tagAlign.gz 10000000 245 0.309860767131184 105 0.2558585 1500 0.1951479 1.587825 1.889503 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18526-H3K27AC_subsample-7.5e6.cc.plot.pdf

./GM18526-H3K27AC_subsample-7.5e6.cc.plot.pdf

./GM18526-H3K27AC_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18526-H3K27AC_subsample-7.5e6.tagAlign.gz 15000000 255 0.391503968367137 105 0.3322569 1500 0.2529423 1.547799 1.746987 2 GM18526-H3K27AC_subsample-7.5e6.tagAlign.gz 15000000 255 0.392041791389022 105 0.3323121 1500 0.2529214 1.550054 1.75235 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18526-H3K27ME3_merged.cc.plot.pdf

./GM18526-H3K27ME3_merged.cc.plot.pdf

./GM18526-H3K27ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18526-H3K27ME3_merged.tagAlign.gz 122657078 245 0.644650878748293 105 0.628571 1500 0.6250742 1.031319 5.59852 2 GM18526-H3K27ME3_merged.tagAlign.gz 122657078 245 0.644650878748293 105 0.628571 1500 0.6250742 1.031319 5.59852 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18526-H3K27ME3_subsample-0.1e6.cc.plot.pdf

./GM18526-H3K27ME3_subsample-0.1e6.cc.plot.pdf

./GM18526-H3K27ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18526-H3K27ME3_subsample-0.1e6.tagAlign.gz 200000 250 0.0378723466973285 105 0.003195374 1500 0.003147792 12.0314 729.7842 2 GM18526-H3K27ME3_subsample-0.1e6.tagAlign.gz 200000 245 0.0378126106817253 105 0.003129644 1500 0.003030123 12.4789 349.4981 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18526-H3K27ME3_subsample-0.25e6.cc.plot.pdf

./GM18526-H3K27ME3_subsample-0.25e6.cc.plot.pdf

./GM18526-H3K27ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18526-H3K27ME3_subsample-0.25e6.tagAlign.gz 500000 245 0.0419044165874592 105 0.00744057 1500 0.007033929 5.957469 85.75249 2 GM18526-H3K27ME3_subsample-0.25e6.tagAlign.gz 500000 240 0.0421082626425246 105 0.007459961 1500 0.007012085 6.005099 78.36122 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18526-H3K27ME3_subsample-0.5e6.cc.plot.pdf

./GM18526-H3K27ME3_subsample-0.5e6.cc.plot.pdf

./GM18526-H3K27ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18526-H3K27ME3_subsample-0.5e6.tagAlign.gz 1000000 235 0.0491802067106415 105 0.01452908 1500 0.01394939 3.525617 60.77513 2 GM18526-H3K27ME3_subsample-0.5e6.tagAlign.gz 1000000 240 0.0493640308511624 105 0.01468705 1500 0.0139942 3.527463 51.04956 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18526-H3K27ME3_subsample-10e6.cc.plot.pdf

./GM18526-H3K27ME3_subsample-10e6.cc.plot.pdf

./GM18526-H3K27ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18526-H3K27ME3_subsample-10e6.tagAlign.gz 20000000 240 0.249061002697011 105 0.2209644 1500 0.2189957 1.137287 15.27209 2 GM18526-H3K27ME3_subsample-10e6.tagAlign.gz 20000000 240 0.249054888970968 105 0.2209273 1500 0.2190218 1.137124 15.76146 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18526-H3K27ME3_subsample-1e6.cc.plot.pdf

./GM18526-H3K27ME3_subsample-1e6.cc.plot.pdf

./GM18526-H3K27ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18526-H3K27ME3_subsample-1e6.tagAlign.gz 2000000 240 0.0626656974146224 105 0.02855956 1500 0.02755618 2.274107 34.99133 2 GM18526-H3K27ME3_subsample-1e6.tagAlign.gz 2000000 240 0.0625596831987669 105 0.02855831 1500 0.02756438 2.269585 35.20892 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18526-H3K27ME3_subsample-2.5e6.cc.plot.pdf

./GM18526-H3K27ME3_subsample-2.5e6.cc.plot.pdf

./GM18526-H3K27ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18526-H3K27ME3_subsample-2.5e6.tagAlign.gz 5000000 245 0.100501950348746 105 0.06769136 1500 0.06599961 1.522766 20.39447 2 GM18526-H3K27ME3_subsample-2.5e6.tagAlign.gz 5000000 245 0.100471242748658 105 0.06769762 1500 0.06588942 1.524846 19.12494 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18526-H3K27ME3_subsample-20e6.cc.plot.pdf

./GM18526-H3K27ME3_subsample-20e6.cc.plot.pdf

./GM18526-H3K27ME3_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18526-H3K27ME3_subsample-20e6.tagAlign.gz 40000000 245 0.383549398261553 105 0.3595696 1500 0.3574129 1.073127 12.11894 2 GM18526-H3K27ME3_subsample-20e6.tagAlign.gz 40000000 245 0.38364481846028 105 0.3595732 1500 0.3574236 1.073362 12.1985 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18526-H3K27ME3_subsample-30e6.cc.plot.pdf

./GM18526-H3K27ME3_subsample-30e6.cc.plot.pdf

./GM18526-H3K27ME3_subsample-30e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18526-H3K27ME3_subsample-30e6.tagAlign.gz 60000000 245 0.477187677540483 105 0.4559705 1500 0.4533538 1.052572 9.108265 2 GM18526-H3K27ME3_subsample-30e6.tagAlign.gz 60000000 245 0.477240211533907 105 0.4560625 1500 0.4534027 1.052575 8.96228 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18526-H3K27ME3_subsample-5e6.cc.plot.pdf

./GM18526-H3K27ME3_subsample-5e6.cc.plot.pdf

./GM18526-H3K27ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18526-H3K27ME3_subsample-5e6.tagAlign.gz 10000000 240 0.156400946487847 105 0.1254305 1500 0.1234456 1.266962 16.6035 2 GM18526-H3K27ME3_subsample-5e6.tagAlign.gz 10000000 245 0.156637304677122 100 0.1254508 1500 0.1234718 1.268607 16.759 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18526-H3K27ME3_subsample-7.5e6.cc.plot.pdf

./GM18526-H3K27ME3_subsample-7.5e6.cc.plot.pdf

./GM18526-H3K27ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18526-H3K27ME3_subsample-7.5e6.tagAlign.gz 15000000 245 0.205616303598158 105 0.1760957 1500 0.1741355 1.180783 16.06033 2 GM18526-H3K27ME3_subsample-7.5e6.tagAlign.gz 15000000 240 0.205424128988084 100 0.1760409 1500 0.1741381 1.179662 16.44178 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18526-H3K36ME3_merged.cc.plot.pdf

./GM18526-H3K36ME3_merged.cc.plot.pdf

./GM18526-H3K36ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18526-H3K36ME3_merged.tagAlign.gz 180326610 245 0.754300169302805 105 0.7389343 1500 0.7283063 1.035691 2.445784 2 GM18526-H3K36ME3_merged.tagAlign.gz 180326610 245 0.754300169302805 105 0.7389343 1500 0.7283063 1.035691 2.445784 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18526-H3K36ME3_subsample-0.1e6.cc.plot.pdf

./GM18526-H3K36ME3_subsample-0.1e6.cc.plot.pdf

./GM18526-H3K36ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18526-H3K36ME3_subsample-0.1e6.tagAlign.gz 200000 230 0.0405402614375778 95 0.00355971 1500 0.003549727 11.42067 3705.221 2 GM18526-H3K36ME3_subsample-0.1e6.tagAlign.gz 200000 250 0.0398461380331089 105 0.003810351 1500 0.003504778 11.36909 118.9286 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18526-H3K36ME3_subsample-0.25e6.cc.plot.pdf

./GM18526-H3K36ME3_subsample-0.25e6.cc.plot.pdf

./GM18526-H3K36ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18526-H3K36ME3_subsample-0.25e6.tagAlign.gz 500000 240 0.0450295845037015 105 0.008982515 1500 0.008669523 5.19401 116.1694 2 GM18526-H3K36ME3_subsample-0.25e6.tagAlign.gz 500000 245 0.044749612183438 95 0.008916135 1500 0.008614969 5.194402 119.9825 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18526-H3K36ME3_subsample-0.5e6.cc.plot.pdf

./GM18526-H3K36ME3_subsample-0.5e6.cc.plot.pdf

./GM18526-H3K36ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18526-H3K36ME3_subsample-0.5e6.tagAlign.gz 1000000 245 0.0530530161966666 105 0.01742196 1500 0.01694533 3.130835 75.75524 2 GM18526-H3K36ME3_subsample-0.5e6.tagAlign.gz 1000000 225 0.0532005988450755 100 0.01755493 1500 0.01706154 3.118158 73.24698 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18526-H3K36ME3_subsample-10e6.cc.plot.pdf

./GM18526-H3K36ME3_subsample-10e6.cc.plot.pdf

./GM18526-H3K36ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18526-H3K36ME3_subsample-10e6.tagAlign.gz 20000000 250 0.286617235907017 105 0.2578867 1500 0.2534374 1.130919 7.457308 2 GM18526-H3K36ME3_subsample-10e6.tagAlign.gz 20000000 245 0.286628458117052 105 0.2576418 1500 0.253386 1.131193 7.811153 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18526-H3K36ME3_subsample-1e6.cc.plot.pdf

./GM18526-H3K36ME3_subsample-1e6.cc.plot.pdf

./GM18526-H3K36ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18526-H3K36ME3_subsample-1e6.tagAlign.gz 2000000 245 0.0697914834285742 95 0.03434336 1500 0.03355286 2.080046 45.84288 2 GM18526-H3K36ME3_subsample-1e6.tagAlign.gz 2000000 245 0.0696416346072919 105 0.0343877 1500 0.03347607 2.080341 39.67126 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18526-H3K36ME3_subsample-2.5e6.cc.plot.pdf

./GM18526-H3K36ME3_subsample-2.5e6.cc.plot.pdf

./GM18526-H3K36ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18526-H3K36ME3_subsample-2.5e6.tagAlign.gz 5000000 245 0.115197814718634 105 0.0813329 1500 0.07953307 1.448427 19.81562 2 GM18526-H3K36ME3_subsample-2.5e6.tagAlign.gz 5000000 250 0.115071797682307 105 0.08124744 1500 0.07959849 1.445653 21.51263 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18526-H3K36ME3_subsample-20e6.cc.plot.pdf

./GM18526-H3K36ME3_subsample-20e6.cc.plot.pdf

./GM18526-H3K36ME3_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18526-H3K36ME3_subsample-20e6.tagAlign.gz 40000000 245 0.430189717941217 105 0.4053709 1500 0.3995221 1.076761 5.243346 2 GM18526-H3K36ME3_subsample-20e6.tagAlign.gz 40000000 245 0.430153839156939 105 0.4055138 1500 0.3994069 1.076982 5.034733 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18526-H3K36ME3_subsample-30e6.cc.plot.pdf

./GM18526-H3K36ME3_subsample-30e6.cc.plot.pdf

./GM18526-H3K36ME3_subsample-30e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18526-H3K36ME3_subsample-30e6.tagAlign.gz 60000000 245 0.52420841543028 105 0.5020372 1500 0.4947307 1.059583 4.034419 2 GM18526-H3K36ME3_subsample-30e6.tagAlign.gz 60000000 245 0.524117587594836 105 0.5021046 1500 0.4948501 1.059144 4.034377 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18526-H3K36ME3_subsample-5e6.cc.plot.pdf

./GM18526-H3K36ME3_subsample-5e6.cc.plot.pdf

./GM18526-H3K36ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18526-H3K36ME3_subsample-5e6.tagAlign.gz 10000000 245 0.181243099656971 105 0.1493169 1500 0.1464156 1.237867 12.00407 2 GM18526-H3K36ME3_subsample-5e6.tagAlign.gz 10000000 245 0.181258838727777 105 0.1492851 1500 0.1464945 1.237308 12.45746 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18526-H3K36ME3_subsample-7.5e6.cc.plot.pdf

./GM18526-H3K36ME3_subsample-7.5e6.cc.plot.pdf

./GM18526-H3K36ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18526-H3K36ME3_subsample-7.5e6.tagAlign.gz 15000000 245 0.237869130122974 105 0.2075173 1500 0.2037832 1.167265 9.128372 2 GM18526-H3K36ME3_subsample-7.5e6.tagAlign.gz 15000000 240 0.237731535151426 105 0.2074332 1500 0.2036872 1.16714 9.088168 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18526-H3K4ME1_merged.cc.plot.pdf

./GM18526-H3K4ME1_merged.cc.plot.pdf

./GM18526-H3K4ME1_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18526-H3K4ME1_merged.tagAlign.gz 140385206 255 0.731229141974026 105 0.7010019 1500 0.6292635 1.16204 1.421354 1 GM18526-H3K4ME1_merged.tagAlign.gz 140385206 255 0.731229141974026 105 0.7010019 1500 0.6292635 1.16204 1.421354 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18526-H3K4ME1_subsample-0.1e6.cc.plot.pdf

./GM18526-H3K4ME1_subsample-0.1e6.cc.plot.pdf

./GM18526-H3K4ME1_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18526-H3K4ME1_subsample-0.1e6.tagAlign.gz 200000 230 0.0410419443803588 105 0.004176116 1500 0.003617385 11.34575 66.98145 2 GM18526-H3K4ME1_subsample-0.1e6.tagAlign.gz 200000 230 0.0412055709008991 105 0.004023243 1500 0.003519791 11.70682 74.85479 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18526-H3K4ME1_subsample-0.25e6.cc.plot.pdf

./GM18526-H3K4ME1_subsample-0.25e6.cc.plot.pdf

./GM18526-H3K4ME1_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18526-H3K4ME1_subsample-0.25e6.tagAlign.gz 500000 235 0.0467917047424942 100 0.009909479 1500 0.008840854 5.292668 35.5137 2 GM18526-H3K4ME1_subsample-0.25e6.tagAlign.gz 500000 230 0.0467495358060135 95 0.01000324 1500 0.008843937 5.286055 32.69699 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18526-H3K4ME1_subsample-0.5e6.cc.plot.pdf

./GM18526-H3K4ME1_subsample-0.5e6.cc.plot.pdf

./GM18526-H3K4ME1_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18526-H3K4ME1_subsample-0.5e6.tagAlign.gz 1000000 235 0.0561021130590522 95 0.01959267 1500 0.01737664 3.228593 17.47521 2 GM18526-H3K4ME1_subsample-0.5e6.tagAlign.gz 1000000 225 0.0564580241128481 105 0.01942209 1500 0.01744718 3.235941 19.75318 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18526-H3K4ME1_subsample-10e6.cc.plot.pdf

./GM18526-H3K4ME1_subsample-10e6.cc.plot.pdf

./GM18526-H3K4ME1_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18526-H3K4ME1_subsample-10e6.tagAlign.gz 20000000 230 0.311677374649595 105 0.2779222 1500 0.2491284 1.251071 2.17231 2 GM18526-H3K4ME1_subsample-10e6.tagAlign.gz 20000000 235 0.311842649740477 105 0.2780748 1500 0.2491901 1.251425 2.169054 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18526-H3K4ME1_subsample-1e6.cc.plot.pdf

./GM18526-H3K4ME1_subsample-1e6.cc.plot.pdf

./GM18526-H3K4ME1_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18526-H3K4ME1_subsample-1e6.tagAlign.gz 2000000 225 0.0747210698639699 100 0.03823668 1500 0.03402023 2.196372 9.652866 2 GM18526-H3K4ME1_subsample-1e6.tagAlign.gz 2000000 225 0.0747088813330454 100 0.03821624 1500 0.03402493 2.19571 9.706756 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18526-H3K4ME1_subsample-2.5e6.cc.plot.pdf

./GM18526-H3K4ME1_subsample-2.5e6.cc.plot.pdf

./GM18526-H3K4ME1_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18526-H3K4ME1_subsample-2.5e6.tagAlign.gz 5000000 230 0.125687499270211 105 0.08964915 1500 0.08032478 1.564741 4.864966 2 GM18526-H3K4ME1_subsample-2.5e6.tagAlign.gz 5000000 230 0.126025058058273 105 0.08988306 1500 0.0801694 1.571984 4.720739 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18526-H3K4ME1_subsample-20e6.cc.plot.pdf

./GM18526-H3K4ME1_subsample-20e6.cc.plot.pdf

./GM18526-H3K4ME1_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18526-H3K4ME1_subsample-20e6.tagAlign.gz 40000000 250 0.460846576740653 105 0.4282482 1500 0.3841906 1.199526 1.739903 2 GM18526-H3K4ME1_subsample-20e6.tagAlign.gz 40000000 250 0.460851319513502 105 0.4283325 1500 0.3841831 1.199562 1.736563 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18526-H3K4ME1_subsample-30e6.cc.plot.pdf

./GM18526-H3K4ME1_subsample-30e6.cc.plot.pdf

./GM18526-H3K4ME1_subsample-30e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18526-H3K4ME1_subsample-30e6.tagAlign.gz 60000000 250 0.554636614220654 105 0.5229744 1500 0.4692346 1.182003 1.589177 2 GM18526-H3K4ME1_subsample-30e6.tagAlign.gz 60000000 255 0.554632278184491 105 0.5227891 1500 0.4691479 1.182212 1.593633 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18526-H3K4ME1_subsample-5e6.cc.plot.pdf

./GM18526-H3K4ME1_subsample-5e6.cc.plot.pdf

./GM18526-H3K4ME1_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18526-H3K4ME1_subsample-5e6.tagAlign.gz 10000000 230 0.198847767596179 105 0.1637578 1500 0.1464307 1.357965 3.025151 2 GM18526-H3K4ME1_subsample-5e6.tagAlign.gz 10000000 230 0.198554047755605 105 0.1634095 1500 0.1463964 1.356277 3.065736 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18526-H3K4ME1_subsample-7.5e6.cc.plot.pdf

./GM18526-H3K4ME1_subsample-7.5e6.cc.plot.pdf

./GM18526-H3K4ME1_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18526-H3K4ME1_subsample-7.5e6.tagAlign.gz 15000000 235 0.259669464652552 105 0.2254651 1500 0.201926 1.285963 2.453094 2 GM18526-H3K4ME1_subsample-7.5e6.tagAlign.gz 15000000 230 0.259926160125974 105 0.2255004 1500 0.2019515 1.287072 2.461883 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18526-H3K4ME3_merged.cc.plot.pdf

./GM18526-H3K4ME3_merged.cc.plot.pdf

./GM18526-H3K4ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18526-H3K4ME3_merged.tagAlign.gz 139871338 255 0.800693131878953 90 0.723723 1500 0.4052603 1.97575 1.241693 1 GM18526-H3K4ME3_merged.tagAlign.gz 139871338 255 0.800693131878953 90 0.723723 1500 0.4052603 1.97575 1.241693 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18526-H3K4ME3_subsample-0.1e6.cc.plot.pdf

./GM18526-H3K4ME3_subsample-0.1e6.cc.plot.pdf

./GM18526-H3K4ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18526-H3K4ME3_subsample-0.1e6.tagAlign.gz 200000 245 0.0531696320400071 95 0.01460812 1500 0.006892781 7.713815 5.998032 2 GM18526-H3K4ME3_subsample-0.1e6.tagAlign.gz 200000 250 0.0523513622830208 100 0.01491387 1500 0.007130914 7.341466 5.810191 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18526-H3K4ME3_subsample-0.25e6.cc.plot.pdf

./GM18526-H3K4ME3_subsample-0.25e6.cc.plot.pdf

./GM18526-H3K4ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18526-H3K4ME3_subsample-0.25e6.tagAlign.gz 500000 240 0.0747180651106814 105 0.03549575 1500 0.01811129 4.125497 3.256171 2 GM18526-H3K4ME3_subsample-0.25e6.tagAlign.gz 500000 240 0.0747661691379008 105 0.03551813 1500 0.01772339 4.218502 3.205598 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18526-H3K4ME3_subsample-0.5e6.cc.plot.pdf

./GM18526-H3K4ME3_subsample-0.5e6.cc.plot.pdf

./GM18526-H3K4ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18526-H3K4ME3_subsample-0.5e6.tagAlign.gz 1000000 245 0.109441769265834 100 0.06779565 1500 0.03389572 3.228779 2.228501 2 GM18526-H3K4ME3_subsample-0.5e6.tagAlign.gz 1000000 240 0.109933636666973 105 0.06811935 1500 0.03431938 3.203252 2.23711 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18526-H3K4ME3_subsample-10e6.cc.plot.pdf

./GM18526-H3K4ME3_subsample-10e6.cc.plot.pdf

./GM18526-H3K4ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18526-H3K4ME3_subsample-10e6.tagAlign.gz 20000000 255 0.600806527573391 105 0.5224469 1500 0.2640233 2.275581 1.303222 1 GM18526-H3K4ME3_subsample-10e6.tagAlign.gz 20000000 255 0.600745785026765 105 0.5226971 1500 0.2642697 2.27323 1.302014 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18526-H3K4ME3_subsample-1e6.cc.plot.pdf

./GM18526-H3K4ME3_subsample-1e6.cc.plot.pdf

./GM18526-H3K4ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18526-H3K4ME3_subsample-1e6.tagAlign.gz 2000000 235 0.171674065052008 105 0.1252395 1500 0.06366181 2.696657 1.75408 2 GM18526-H3K4ME3_subsample-1e6.tagAlign.gz 2000000 250 0.171344044028713 105 0.1257426 1500 0.063365 2.70408 1.731054 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18526-H3K4ME3_subsample-2.5e6.cc.plot.pdf

./GM18526-H3K4ME3_subsample-2.5e6.cc.plot.pdf

./GM18526-H3K4ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18526-H3K4ME3_subsample-2.5e6.tagAlign.gz 5000000 255 0.310495321227566 105 0.2538991 1500 0.1283376 2.419364 1.450746 1 GM18526-H3K4ME3_subsample-2.5e6.tagAlign.gz 5000000 250 0.310157801933669 105 0.253618 1500 0.1286403 2.411047 1.452399 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18526-H3K4ME3_subsample-20e6.cc.plot.pdf

./GM18526-H3K4ME3_subsample-20e6.cc.plot.pdf

./GM18526-H3K4ME3_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18526-H3K4ME3_subsample-20e6.tagAlign.gz 40000000 255 0.722877538317533 105 0.6373071 1500 0.3229828 2.23813 1.272236 1 GM18526-H3K4ME3_subsample-20e6.tagAlign.gz 40000000 255 0.722957161452678 105 0.6373552 1500 0.3231338 2.237331 1.272426 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18526-H3K4ME3_subsample-30e6.cc.plot.pdf

./GM18526-H3K4ME3_subsample-30e6.cc.plot.pdf

./GM18526-H3K4ME3_subsample-30e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18526-H3K4ME3_subsample-30e6.tagAlign.gz 60000000 255 0.773595528227352 105 0.6889254 1500 0.3516233 2.200069 1.251022 1 GM18526-H3K4ME3_subsample-30e6.tagAlign.gz 60000000 255 0.773480613128464 105 0.6889742 1500 0.3516369 2.199657 1.25051 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18526-H3K4ME3_subsample-5e6.cc.plot.pdf

./GM18526-H3K4ME3_subsample-5e6.cc.plot.pdf

./GM18526-H3K4ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18526-H3K4ME3_subsample-5e6.tagAlign.gz 10000000 245 0.452934923725446 105 0.3852193 1500 0.1951422 2.321051 1.356253 1 GM18526-H3K4ME3_subsample-5e6.tagAlign.gz 10000000 255 0.452590207103892 105 0.3853695 1500 0.1953035 2.317369 1.35367 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18526-H3K4ME3_subsample-7.5e6.cc.plot.pdf

./GM18526-H3K4ME3_subsample-7.5e6.cc.plot.pdf

./GM18526-H3K4ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18526-H3K4ME3_subsample-7.5e6.tagAlign.gz 15000000 255 0.540856225180982 105 0.4675125 1500 0.2364774 2.287137 1.317457 1 GM18526-H3K4ME3_subsample-7.5e6.tagAlign.gz 15000000 255 0.540668346952331 105 0.4674092 1500 0.2364145 2.286951 1.317147 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18951-H3K27AC_merged.cc.plot.pdf

./GM18951-H3K27AC_merged.cc.plot.pdf

./GM18951-H3K27AC_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18951-H3K27AC_merged.tagAlign.gz 124230312 260 0.734771139530621 105 0.6823322 1500 0.5611309 1.309447 1.43266 1 GM18951-H3K27AC_merged.tagAlign.gz 124230312 260 0.734771139530621 105 0.6823322 1500 0.5611309 1.309447 1.43266 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18951-H3K27AC_subsample-0.1e6.cc.plot.pdf

./GM18951-H3K27AC_subsample-0.1e6.cc.plot.pdf

./GM18951-H3K27AC_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18951-H3K27AC_subsample-0.1e6.tagAlign.gz 200000 240 0.0423723954295172 105 0.006232778 1500 0.004704211 9.007334 24.6428 2 GM18951-H3K27AC_subsample-0.1e6.tagAlign.gz 200000 245 0.0427247694085585 105 0.005681946 1500 0.004232786 10.09377 26.56158 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18951-H3K27AC_subsample-0.25e6.cc.plot.pdf

./GM18951-H3K27AC_subsample-0.25e6.cc.plot.pdf

./GM18951-H3K27AC_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18951-H3K27AC_subsample-0.25e6.tagAlign.gz 500000 240 0.0508013713505195 95 0.01465961 1500 0.01166328 4.355667 13.062 2 GM18951-H3K27AC_subsample-0.25e6.tagAlign.gz 500000 240 0.0515169475583111 105 0.01461649 1500 0.01140832 4.515734 12.50204 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18951-H3K27AC_subsample-0.5e6.cc.plot.pdf

./GM18951-H3K27AC_subsample-0.5e6.cc.plot.pdf

./GM18951-H3K27AC_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18951-H3K27AC_subsample-0.5e6.tagAlign.gz 1000000 245 0.0659567146411878 100 0.02870801 1500 0.02249639 2.93188 6.99662 2 GM18951-H3K27AC_subsample-0.5e6.tagAlign.gz 1000000 245 0.0657895459529268 105 0.02867133 1500 0.02260909 2.909871 7.122852 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18951-H3K27AC_subsample-10e6.cc.plot.pdf

./GM18951-H3K27AC_subsample-10e6.cc.plot.pdf

./GM18951-H3K27AC_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18951-H3K27AC_subsample-10e6.tagAlign.gz 20000000 250 0.39992356244293 105 0.3453321 1500 0.2745729 1.45653 1.77151 2 GM18951-H3K27AC_subsample-10e6.tagAlign.gz 20000000 255 0.39991586425774 105 0.3453233 1500 0.2747044 1.455805 1.773058 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18951-H3K27AC_subsample-1e6.cc.plot.pdf

./GM18951-H3K27AC_subsample-1e6.cc.plot.pdf

./GM18951-H3K27AC_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18951-H3K27AC_subsample-1e6.tagAlign.gz 2000000 250 0.0941007754125898 105 0.05544502 1500 0.04370334 2.153171 4.292184 2 GM18951-H3K27AC_subsample-1e6.tagAlign.gz 2000000 245 0.0941008045878698 105 0.05523787 1500 0.04362468 2.157054 4.346449 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18951-H3K27AC_subsample-2.5e6.cc.plot.pdf

./GM18951-H3K27AC_subsample-2.5e6.cc.plot.pdf

./GM18951-H3K27AC_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18951-H3K27AC_subsample-2.5e6.tagAlign.gz 5000000 245 0.168269060244266 105 0.1255729 1500 0.09947158 1.691629 2.635786 2 GM18951-H3K27AC_subsample-2.5e6.tagAlign.gz 5000000 250 0.167999699017584 105 0.1256282 1500 0.0995167 1.688156 2.622718 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18951-H3K27AC_subsample-20e6.cc.plot.pdf

./GM18951-H3K27AC_subsample-20e6.cc.plot.pdf

./GM18951-H3K27AC_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18951-H3K27AC_subsample-20e6.tagAlign.gz 40000000 255 0.549486474578249 105 0.4895826 1500 0.3910064 1.405313 1.607691 2 GM18951-H3K27AC_subsample-20e6.tagAlign.gz 40000000 250 0.5494558789543 105 0.4895343 1500 0.3912235 1.404455 1.609511 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18951-H3K27AC_subsample-30e6.cc.plot.pdf

./GM18951-H3K27AC_subsample-30e6.cc.plot.pdf

./GM18951-H3K27AC_subsample-30e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18951-H3K27AC_subsample-30e6.tagAlign.gz 60000000 255 0.628751677694927 105 0.5690101 1500 0.4575341 1.374218 1.535914 2 GM18951-H3K27AC_subsample-30e6.tagAlign.gz 60000000 260 0.628645074258972 105 0.5689651 1500 0.4576052 1.373772 1.535919 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18951-H3K27AC_subsample-5e6.cc.plot.pdf

./GM18951-H3K27AC_subsample-5e6.cc.plot.pdf

./GM18951-H3K27AC_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18951-H3K27AC_subsample-5e6.tagAlign.gz 10000000 245 0.265364781375289 105 0.2175578 1500 0.1729254 1.534563 2.071126 2 GM18951-H3K27AC_subsample-5e6.tagAlign.gz 10000000 250 0.265529558538612 105 0.2177103 1500 0.1728006 1.536624 2.064786 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18951-H3K27AC_subsample-7.5e6.cc.plot.pdf

./GM18951-H3K27AC_subsample-7.5e6.cc.plot.pdf

./GM18951-H3K27AC_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18951-H3K27AC_subsample-7.5e6.tagAlign.gz 15000000 245 0.340287666002216 105 0.2885857 1500 0.2293974 1.483398 1.873516 2 GM18951-H3K27AC_subsample-7.5e6.tagAlign.gz 15000000 255 0.340267007613643 105 0.2888558 1500 0.2296077 1.481949 1.867729 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18951-H3K27ME3_merged.cc.plot.pdf

./GM18951-H3K27ME3_merged.cc.plot.pdf

./GM18951-H3K27ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18951-H3K27ME3_merged.tagAlign.gz 136285026 260 0.666812431941207 105 0.6509384 1500 0.6479118 1.029172 6.244852 2 GM18951-H3K27ME3_merged.tagAlign.gz 136285026 260 0.666812431941207 105 0.6509384 1500 0.6479118 1.029172 6.244852 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18951-H3K27ME3_subsample-0.1e6.cc.plot.pdf

./GM18951-H3K27ME3_subsample-0.1e6.cc.plot.pdf

./GM18951-H3K27ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18951-H3K27ME3_subsample-0.1e6.tagAlign.gz 200000 250 0.0397083767423243 105 0.003232033 1500 0.003057681 12.98644 210.2102 2 GM18951-H3K27ME3_subsample-0.1e6.tagAlign.gz 200000 240 0.0390041307965098 105 0.00317293 1500 0.002979717 13.08988 186.4491 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18951-H3K27ME3_subsample-0.25e6.cc.plot.pdf

./GM18951-H3K27ME3_subsample-0.25e6.cc.plot.pdf

./GM18951-H3K27ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18951-H3K27ME3_subsample-0.25e6.tagAlign.gz 500000 235 0.043371635197223 105 0.007388786 1500 0.007098246 6.110191 124.8481 2 GM18951-H3K27ME3_subsample-0.25e6.tagAlign.gz 500000 250 0.0433346149961605 100 0.007399138 1500 0.007032159 6.162349 98.92221 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18951-H3K27ME3_subsample-0.5e6.cc.plot.pdf

./GM18951-H3K27ME3_subsample-0.5e6.cc.plot.pdf

./GM18951-H3K27ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18951-H3K27ME3_subsample-0.5e6.tagAlign.gz 1000000 240 0.0504774475277349 105 0.0146316 1500 0.01399833 3.605962 57.60453 2 GM18951-H3K27ME3_subsample-0.5e6.tagAlign.gz 1000000 245 0.0499295175322303 105 0.01458158 1500 0.01396165 3.576189 58.01948 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18951-H3K27ME3_subsample-10e6.cc.plot.pdf

./GM18951-H3K27ME3_subsample-10e6.cc.plot.pdf

./GM18951-H3K27ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18951-H3K27ME3_subsample-10e6.tagAlign.gz 20000000 255 0.248652705605866 105 0.2197537 1500 0.2180191 1.140509 17.66106 2 GM18951-H3K27ME3_subsample-10e6.tagAlign.gz 20000000 255 0.248821989121103 105 0.2197538 1500 0.2181584 1.140556 19.22053 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18951-H3K27ME3_subsample-1e6.cc.plot.pdf

./GM18951-H3K27ME3_subsample-1e6.cc.plot.pdf

./GM18951-H3K27ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18951-H3K27ME3_subsample-1e6.tagAlign.gz 2000000 260 0.0639138811768209 105 0.02839325 1500 0.02747336 2.326395 39.61396 2 GM18951-H3K27ME3_subsample-1e6.tagAlign.gz 2000000 250 0.0640249205505001 105 0.02865383 1500 0.02741628 2.335288 29.5815 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18951-H3K27ME3_subsample-2.5e6.cc.plot.pdf

./GM18951-H3K27ME3_subsample-2.5e6.cc.plot.pdf

./GM18951-H3K27ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18951-H3K27ME3_subsample-2.5e6.tagAlign.gz 5000000 240 0.10153013316305 105 0.0677188 1500 0.06568157 1.545793 17.59672 2 GM18951-H3K27ME3_subsample-2.5e6.tagAlign.gz 5000000 255 0.101640597612216 105 0.06759146 1500 0.06580484 1.544576 20.05786 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18951-H3K27ME3_subsample-20e6.cc.plot.pdf

./GM18951-H3K27ME3_subsample-20e6.cc.plot.pdf

./GM18951-H3K27ME3_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18951-H3K27ME3_subsample-20e6.tagAlign.gz 40000000 260 0.382863137133131 105 0.3580876 1500 0.3562523 1.074697 14.49942 2 GM18951-H3K27ME3_subsample-20e6.tagAlign.gz 40000000 260 0.382892033502785 105 0.358129 1500 0.3563149 1.074589 14.65048 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18951-H3K27ME3_subsample-30e6.cc.plot.pdf

./GM18951-H3K27ME3_subsample-30e6.cc.plot.pdf

./GM18951-H3K27ME3_subsample-30e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18951-H3K27ME3_subsample-30e6.tagAlign.gz 60000000 260 0.476316610685547 105 0.4545919 1500 0.4522953 1.05311 10.45922 2 GM18951-H3K27ME3_subsample-30e6.tagAlign.gz 60000000 255 0.476329377059727 105 0.4545274 1500 0.4523042 1.053117 10.80677 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18951-H3K27ME3_subsample-5e6.cc.plot.pdf

./GM18951-H3K27ME3_subsample-5e6.cc.plot.pdf

./GM18951-H3K27ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18951-H3K27ME3_subsample-5e6.tagAlign.gz 10000000 240 0.15712826551933 105 0.1252039 1500 0.1230702 1.276737 15.96251 2 GM18951-H3K27ME3_subsample-5e6.tagAlign.gz 10000000 245 0.157118439251747 100 0.1251943 1500 0.1231436 1.275896 16.5676 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18951-H3K27ME3_subsample-7.5e6.cc.plot.pdf

./GM18951-H3K27ME3_subsample-7.5e6.cc.plot.pdf

./GM18951-H3K27ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18951-H3K27ME3_subsample-7.5e6.tagAlign.gz 15000000 255 0.205688676299451 100 0.175269 1500 0.173398 1.186223 17.25865 2 GM18951-H3K27ME3_subsample-7.5e6.tagAlign.gz 15000000 260 0.205535395678788 105 0.1752614 1500 0.1734331 1.185099 17.55838 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18951-H3K36ME3_merged.cc.plot.pdf

./GM18951-H3K36ME3_merged.cc.plot.pdf

./GM18951-H3K36ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18951-H3K36ME3_merged.tagAlign.gz 220872354 240 0.782870545747706 105 0.7685939 1500 0.758948 1.031521 2.480065 2 GM18951-H3K36ME3_merged.tagAlign.gz 220872354 240 0.782870545747706 105 0.7685939 1500 0.758948 1.031521 2.480065 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18951-H3K36ME3_subsample-0.1e6.cc.plot.pdf

./GM18951-H3K36ME3_subsample-0.1e6.cc.plot.pdf

./GM18951-H3K36ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18951-H3K36ME3_subsample-0.1e6.tagAlign.gz 200000 225 0.0402179469027119 105 0.00355808 1500 0.003381594 11.89319 208.7217 2 GM18951-H3K36ME3_subsample-0.1e6.tagAlign.gz 200000 230 0.0402341015425753 95 0.003583668 1500 0.003329908 12.08265 145.4297 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18951-H3K36ME3_subsample-0.25e6.cc.plot.pdf

./GM18951-H3K36ME3_subsample-0.25e6.cc.plot.pdf

./GM18951-H3K36ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18951-H3K36ME3_subsample-0.25e6.tagAlign.gz 500000 230 0.0447837635383566 105 0.008669636 1500 0.008376481 5.34637 124.1912 2 GM18951-H3K36ME3_subsample-0.25e6.tagAlign.gz 500000 235 0.044520200951025 100 0.008563543 1500 0.008563407 5.198889 265151.5 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18951-H3K36ME3_subsample-0.5e6.cc.plot.pdf

./GM18951-H3K36ME3_subsample-0.5e6.cc.plot.pdf

./GM18951-H3K36ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18951-H3K36ME3_subsample-0.5e6.tagAlign.gz 1000000 235 0.0528746275517629 105 0.01717985 1500 0.01669911 3.166314 75.25023 2 GM18951-H3K36ME3_subsample-0.5e6.tagAlign.gz 1000000 235 0.0527086212468083 105 0.01721659 1500 0.01666255 3.163299 65.0598 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18951-H3K36ME3_subsample-10e6.cc.plot.pdf

./GM18951-H3K36ME3_subsample-10e6.cc.plot.pdf

./GM18951-H3K36ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18951-H3K36ME3_subsample-10e6.tagAlign.gz 20000000 235 0.281978392870183 105 0.2529787 1500 0.2492303 1.131397 8.73657 2 GM18951-H3K36ME3_subsample-10e6.tagAlign.gz 20000000 230 0.28203301696895 105 0.2530908 1500 0.2492232 1.131648 8.483308 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18951-H3K36ME3_subsample-1e6.cc.plot.pdf

./GM18951-H3K36ME3_subsample-1e6.cc.plot.pdf

./GM18951-H3K36ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18951-H3K36ME3_subsample-1e6.tagAlign.gz 2000000 240 0.0690123433721705 105 0.03367479 1500 0.03282277 2.102575 42.47508 2 GM18951-H3K36ME3_subsample-1e6.tagAlign.gz 2000000 225 0.0688643014601694 105 0.03362108 1500 0.03284709 2.096512 46.53429 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18951-H3K36ME3_subsample-2.5e6.cc.plot.pdf

./GM18951-H3K36ME3_subsample-2.5e6.cc.plot.pdf

./GM18951-H3K36ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18951-H3K36ME3_subsample-2.5e6.tagAlign.gz 5000000 220 0.113690122466767 95 0.07948282 1500 0.0778427 1.460511 21.85658 2 GM18951-H3K36ME3_subsample-2.5e6.tagAlign.gz 5000000 220 0.113554534386586 105 0.07963682 1500 0.07785222 1.458591 20.00582 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18951-H3K36ME3_subsample-20e6.cc.plot.pdf

./GM18951-H3K36ME3_subsample-20e6.cc.plot.pdf

./GM18951-H3K36ME3_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18951-H3K36ME3_subsample-20e6.tagAlign.gz 40000000 235 0.424396214557918 105 0.3996583 1500 0.3944008 1.076053 5.705213 2 GM18951-H3K36ME3_subsample-20e6.tagAlign.gz 40000000 235 0.424266578718438 105 0.399679 1500 0.3943632 1.075827 5.625414 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18951-H3K36ME3_subsample-30e6.cc.plot.pdf

./GM18951-H3K36ME3_subsample-30e6.cc.plot.pdf

./GM18951-H3K36ME3_subsample-30e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18951-H3K36ME3_subsample-30e6.tagAlign.gz 60000000 235 0.518055747852478 105 0.4961752 1500 0.4897371 1.057824 4.398617 2 GM18951-H3K36ME3_subsample-30e6.tagAlign.gz 60000000 235 0.518016054391499 105 0.4959825 1500 0.4896392 1.057955 4.473541 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18951-H3K36ME3_subsample-5e6.cc.plot.pdf

./GM18951-H3K36ME3_subsample-5e6.cc.plot.pdf

./GM18951-H3K36ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18951-H3K36ME3_subsample-5e6.tagAlign.gz 10000000 220 0.178526055596967 100 0.1465155 1500 0.1436934 1.24241 12.34282 2 GM18951-H3K36ME3_subsample-5e6.tagAlign.gz 10000000 220 0.178337651684109 105 0.1463021 1500 0.1437802 1.240349 13.70321 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18951-H3K36ME3_subsample-7.5e6.cc.plot.pdf

./GM18951-H3K36ME3_subsample-7.5e6.cc.plot.pdf

./GM18951-H3K36ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18951-H3K36ME3_subsample-7.5e6.tagAlign.gz 15000000 235 0.233923367885831 105 0.2035637 1500 0.2003316 1.167681 10.3934 2 GM18951-H3K36ME3_subsample-7.5e6.tagAlign.gz 15000000 220 0.233826885680146 105 0.203578 1500 0.2003026 1.167368 10.2352 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18951-H3K4ME1_merged.cc.plot.pdf

./GM18951-H3K4ME1_merged.cc.plot.pdf

./GM18951-H3K4ME1_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18951-H3K4ME1_merged.tagAlign.gz 118746162 260 0.690090547623016 105 0.6606212 1500 0.6036448 1.143206 1.51722 2 GM18951-H3K4ME1_merged.tagAlign.gz 118746162 260 0.690090547623016 105 0.6606212 1500 0.6036448 1.143206 1.51722 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18951-H3K4ME1_subsample-0.1e6.cc.plot.pdf

./GM18951-H3K4ME1_subsample-0.1e6.cc.plot.pdf

./GM18951-H3K4ME1_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18951-H3K4ME1_subsample-0.1e6.tagAlign.gz 200000 245 0.0431590096916051 100 0.004190382 1500 0.003378316 12.7753 48.98703 2 GM18951-H3K4ME1_subsample-0.1e6.tagAlign.gz 200000 250 0.043281175984641 95 0.004008895 1500 0.003650472 11.85632 110.5698 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18951-H3K4ME1_subsample-0.25e6.cc.plot.pdf

./GM18951-H3K4ME1_subsample-0.25e6.cc.plot.pdf

./GM18951-H3K4ME1_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18951-H3K4ME1_subsample-0.25e6.tagAlign.gz 500000 255 0.0488582601597184 105 0.009397439 1500 0.008411285 5.808656 41.01488 2 GM18951-H3K4ME1_subsample-0.25e6.tagAlign.gz 500000 235 0.0481547554481323 95 0.009579069 1500 0.008553172 5.630046 38.60191 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18951-H3K4ME1_subsample-0.5e6.cc.plot.pdf

./GM18951-H3K4ME1_subsample-0.5e6.cc.plot.pdf

./GM18951-H3K4ME1_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18951-H3K4ME1_subsample-0.5e6.tagAlign.gz 1000000 235 0.0574658751831893 105 0.01870721 1500 0.01675913 3.428929 20.89585 2 GM18951-H3K4ME1_subsample-0.5e6.tagAlign.gz 1000000 245 0.0571021668847145 105 0.01857225 1500 0.01688743 3.381342 23.8689 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18951-H3K4ME1_subsample-10e6.cc.plot.pdf

./GM18951-H3K4ME1_subsample-10e6.cc.plot.pdf

./GM18951-H3K4ME1_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18951-H3K4ME1_subsample-10e6.tagAlign.gz 20000000 250 0.302589254551242 105 0.2674006 1500 0.2438758 1.240752 2.495808 2 GM18951-H3K4ME1_subsample-10e6.tagAlign.gz 20000000 250 0.302483031328671 105 0.267342 1500 0.243908 1.240152 2.499574 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18951-H3K4ME1_subsample-1e6.cc.plot.pdf

./GM18951-H3K4ME1_subsample-1e6.cc.plot.pdf

./GM18951-H3K4ME1_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18951-H3K4ME1_subsample-1e6.tagAlign.gz 2000000 250 0.0749385995367712 105 0.0362092 1500 0.03285079 2.281181 12.53208 2 GM18951-H3K4ME1_subsample-1e6.tagAlign.gz 2000000 250 0.0747324264052712 100 0.03612689 1500 0.03266604 2.287771 12.15493 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18951-H3K4ME1_subsample-2.5e6.cc.plot.pdf

./GM18951-H3K4ME1_subsample-2.5e6.cc.plot.pdf

./GM18951-H3K4ME1_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18951-H3K4ME1_subsample-2.5e6.tagAlign.gz 5000000 245 0.12300120125145 100 0.0852274 1500 0.0775509 1.586071 5.920707 2 GM18951-H3K4ME1_subsample-2.5e6.tagAlign.gz 5000000 245 0.123290944165157 100 0.08530366 1500 0.07751093 1.590627 5.874703 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18951-H3K4ME1_subsample-20e6.cc.plot.pdf

./GM18951-H3K4ME1_subsample-20e6.cc.plot.pdf

./GM18951-H3K4ME1_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18951-H3K4ME1_subsample-20e6.tagAlign.gz 40000000 255 0.448843527343708 105 0.4158898 1500 0.3798628 1.181594 1.914696 2 GM18951-H3K4ME1_subsample-20e6.tagAlign.gz 40000000 250 0.448708770467272 105 0.4157294 1500 0.3797384 1.181626 1.916322 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18951-H3K4ME1_subsample-30e6.cc.plot.pdf

./GM18951-H3K4ME1_subsample-30e6.cc.plot.pdf

./GM18951-H3K4ME1_subsample-30e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18951-H3K4ME1_subsample-30e6.tagAlign.gz 60000000 260 0.542320435127347 105 0.5107984 1500 0.4666096 1.162257 1.713349 2 GM18951-H3K4ME1_subsample-30e6.tagAlign.gz 60000000 255 0.542378769236525 105 0.510734 1500 0.4665783 1.16246 1.716665 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18951-H3K4ME1_subsample-5e6.cc.plot.pdf

./GM18951-H3K4ME1_subsample-5e6.cc.plot.pdf

./GM18951-H3K4ME1_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18951-H3K4ME1_subsample-5e6.tagAlign.gz 10000000 250 0.192899178842279 105 0.1560897 1500 0.1420969 1.357519 3.630602 2 GM18951-H3K4ME1_subsample-5e6.tagAlign.gz 10000000 240 0.192944184441067 105 0.1561285 1500 0.1423789 1.355146 3.677586 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18951-H3K4ME1_subsample-7.5e6.cc.plot.pdf

./GM18951-H3K4ME1_subsample-7.5e6.cc.plot.pdf

./GM18951-H3K4ME1_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18951-H3K4ME1_subsample-7.5e6.tagAlign.gz 15000000 245 0.25192948534328 105 0.215935 1500 0.1970163 1.278724 2.902584 2 GM18951-H3K4ME1_subsample-7.5e6.tagAlign.gz 15000000 250 0.25190910288429 105 0.2160859 1500 0.197023 1.278577 2.87922 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18951-H3K4ME3_merged.cc.plot.pdf

./GM18951-H3K4ME3_merged.cc.plot.pdf

./GM18951-H3K4ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18951-H3K4ME3_merged.tagAlign.gz 135466058 260 0.794994980741913 80 0.7171338 1500 0.4248853 1.871081 1.266421 1 GM18951-H3K4ME3_merged.tagAlign.gz 135466058 260 0.794994980741913 80 0.7171338 1500 0.4248853 1.871081 1.266421 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18951-H3K4ME3_subsample-0.1e6.cc.plot.pdf

./GM18951-H3K4ME3_subsample-0.1e6.cc.plot.pdf

./GM18951-H3K4ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18951-H3K4ME3_subsample-0.1e6.tagAlign.gz 200000 240 0.0519864823161058 105 0.01356549 1500 0.007361994 7.061468 7.193441 2 GM18951-H3K4ME3_subsample-0.1e6.tagAlign.gz 200000 245 0.0515278859319482 100 0.01358257 1500 0.00710106 7.256366 6.854397 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18951-H3K4ME3_subsample-0.25e6.cc.plot.pdf

./GM18951-H3K4ME3_subsample-0.25e6.cc.plot.pdf

./GM18951-H3K4ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18951-H3K4ME3_subsample-0.25e6.tagAlign.gz 500000 240 0.0722085098603138 95 0.03193319 1500 0.01737414 4.156091 3.766342 2 GM18951-H3K4ME3_subsample-0.25e6.tagAlign.gz 500000 245 0.0713843939030972 105 0.03239734 1500 0.01718596 4.153646 3.56302 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18951-H3K4ME3_subsample-0.5e6.cc.plot.pdf

./GM18951-H3K4ME3_subsample-0.5e6.cc.plot.pdf

./GM18951-H3K4ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18951-H3K4ME3_subsample-0.5e6.tagAlign.gz 1000000 245 0.102949630499739 105 0.06231959 1500 0.03322225 3.098816 2.396349 2 GM18951-H3K4ME3_subsample-0.5e6.tagAlign.gz 1000000 245 0.103050585667531 100 0.06123479 1500 0.03329336 3.095229 2.496552 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18951-H3K4ME3_subsample-10e6.cc.plot.pdf

./GM18951-H3K4ME3_subsample-10e6.cc.plot.pdf

./GM18951-H3K4ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18951-H3K4ME3_subsample-10e6.tagAlign.gz 20000000 255 0.577141431102419 105 0.5021024 1500 0.2697618 2.139448 1.32297 1 GM18951-H3K4ME3_subsample-10e6.tagAlign.gz 20000000 255 0.577156097513596 105 0.5020628 1500 0.2696507 2.140384 1.323104 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18951-H3K4ME3_subsample-1e6.cc.plot.pdf

./GM18951-H3K4ME3_subsample-1e6.cc.plot.pdf

./GM18951-H3K4ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18951-H3K4ME3_subsample-1e6.tagAlign.gz 2000000 235 0.160121751195297 105 0.1147309 1500 0.06144098 2.606107 1.851771 2 GM18951-H3K4ME3_subsample-1e6.tagAlign.gz 2000000 245 0.159547345980157 105 0.1150183 1500 0.06134468 2.600834 1.829626 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18951-H3K4ME3_subsample-2.5e6.cc.plot.pdf

./GM18951-H3K4ME3_subsample-2.5e6.cc.plot.pdf

./GM18951-H3K4ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18951-H3K4ME3_subsample-2.5e6.tagAlign.gz 5000000 255 0.290059578609833 105 0.2359726 1500 0.126488 2.293179 1.494015 1 GM18951-H3K4ME3_subsample-2.5e6.tagAlign.gz 5000000 250 0.290476408570214 105 0.2353551 1500 0.1269571 2.287989 1.508509 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18951-H3K4ME3_subsample-20e6.cc.plot.pdf

./GM18951-H3K4ME3_subsample-20e6.cc.plot.pdf

./GM18951-H3K4ME3_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18951-H3K4ME3_subsample-20e6.tagAlign.gz 40000000 255 0.703458475792588 105 0.6210656 1500 0.3341276 2.105359 1.287145 1 GM18951-H3K4ME3_subsample-20e6.tagAlign.gz 40000000 255 0.703188570867161 105 0.6211768 1500 0.3343425 2.103198 1.285921 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18951-H3K4ME3_subsample-30e6.cc.plot.pdf

./GM18951-H3K4ME3_subsample-30e6.cc.plot.pdf

./GM18951-H3K4ME3_subsample-30e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18951-H3K4ME3_subsample-30e6.tagAlign.gz 60000000 255 0.757303016121738 105 0.6757761 1500 0.3661932 2.068042 1.263345 1 GM18951-H3K4ME3_subsample-30e6.tagAlign.gz 60000000 255 0.757395472976296 105 0.6758347 1500 0.3662418 2.06802 1.263445 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18951-H3K4ME3_subsample-5e6.cc.plot.pdf

./GM18951-H3K4ME3_subsample-5e6.cc.plot.pdf

./GM18951-H3K4ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18951-H3K4ME3_subsample-5e6.tagAlign.gz 10000000 245 0.428717850093766 105 0.3649063 1500 0.1958552 2.188953 1.377469 1 GM18951-H3K4ME3_subsample-5e6.tagAlign.gz 10000000 255 0.428550407637999 105 0.3645679 1500 0.1957373 2.189416 1.378975 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM18951-H3K4ME3_subsample-7.5e6.cc.plot.pdf

./GM18951-H3K4ME3_subsample-7.5e6.cc.plot.pdf

./GM18951-H3K4ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM18951-H3K4ME3_subsample-7.5e6.tagAlign.gz 15000000 255 0.516480053937805 105 0.4461196 1500 0.2397609 2.154146 1.340962 1 GM18951-H3K4ME3_subsample-7.5e6.tagAlign.gz 15000000 255 0.516405881149935 105 0.4460927 1500 0.2394586 2.156556 1.340278 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-H3K27AC_merged.cc.plot.pdf

./GM19239-H3K27AC_merged.cc.plot.pdf

./GM19239-H3K27AC_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-H3K27AC_merged.tagAlign.gz 178126856 310 0.845611430853438 105 0.7376353 1500 0.5554627 1.522355 1.592713 2 GM19239-H3K27AC_merged.tagAlign.gz 178126856 310 0.845611430853438 105 0.7376353 1500 0.5554627 1.522355 1.592713 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-H3K27AC_subsample-0.1e6.cc.plot.pdf

./GM19239-H3K27AC_subsample-0.1e6.cc.plot.pdf

./GM19239-H3K27AC_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-H3K27AC_subsample-0.1e6.tagAlign.gz 200000 295 0.0498954837226164 105 0.0102624 1500 0.007646456 6.525308 16.1506 2 GM19239-H3K27AC_subsample-0.1e6.tagAlign.gz 200000 305 0.0500814232057543 100 0.01016731 1500 0.007144832 7.009461 14.20578 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-H3K27AC_subsample-0.25e6.cc.plot.pdf

./GM19239-H3K27AC_subsample-0.25e6.cc.plot.pdf

./GM19239-H3K27AC_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-H3K27AC_subsample-0.25e6.tagAlign.gz 500000 305 0.0660347681961975 105 0.02442829 1500 0.01858697 3.552744 8.122789 2 GM19239-H3K27AC_subsample-0.25e6.tagAlign.gz 500000 305 0.066100713080117 105 0.0244525 1500 0.01826848 3.618294 7.734804 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-H3K27AC_subsample-0.5e6.cc.plot.pdf

./GM19239-H3K27AC_subsample-0.5e6.cc.plot.pdf

./GM19239-H3K27AC_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-H3K27AC_subsample-0.5e6.tagAlign.gz 1000000 310 0.0928529024414906 100 0.04736444 1500 0.03506348 2.648137 4.69796 2 GM19239-H3K27AC_subsample-0.5e6.tagAlign.gz 1000000 315 0.0923240013194811 100 0.04738338 1500 0.03517824 2.624464 4.682103 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-H3K27AC_subsample-10e6.cc.plot.pdf

./GM19239-H3K27AC_subsample-10e6.cc.plot.pdf

./GM19239-H3K27AC_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-H3K27AC_subsample-10e6.tagAlign.gz 20000000 310 0.549557388318079 105 0.4461787 1500 0.3308744 1.660924 1.896574 2 GM19239-H3K27AC_subsample-10e6.tagAlign.gz 20000000 310 0.549734743837595 105 0.4459206 1500 0.3309614 1.661024 1.903053 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-H3K27AC_subsample-15e6.cc.plot.pdf

./GM19239-H3K27AC_subsample-15e6.cc.plot.pdf

./GM19239-H3K27AC_subsample-15e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-H3K27AC_subsample-15e6.tagAlign.gz 30000000 310 0.637357550183749 105 0.5247709 1500 0.389075 1.638135 1.829698 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-H3K27AC_subsample-1e6.cc.plot.pdf

./GM19239-H3K27AC_subsample-1e6.cc.plot.pdf

./GM19239-H3K27AC_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-H3K27AC_subsample-1e6.tagAlign.gz 2000000 315 0.140837385900029 105 0.08946019 1500 0.06618577 2.12791 3.207454 2 GM19239-H3K27AC_subsample-1e6.tagAlign.gz 2000000 310 0.140896749704095 105 0.08912001 1500 0.06595835 2.136147 3.235451 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-H3K27AC_subsample-2.5e6.cc.plot.pdf

./GM19239-H3K27AC_subsample-2.5e6.cc.plot.pdf

./GM19239-H3K27AC_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-H3K27AC_subsample-2.5e6.tagAlign.gz 5000000 305 0.258008751429868 105 0.1916787 1500 0.1419877 1.81712 2.334851 2 GM19239-H3K27AC_subsample-2.5e6.tagAlign.gz 5000000 315 0.257640399732396 105 0.1915286 1500 0.1420986 1.81311 2.337486 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-H3K27AC_subsample-20e6.cc.plot.pdf

./GM19239-H3K27AC_subsample-20e6.cc.plot.pdf

./GM19239-H3K27AC_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-H3K27AC_subsample-20e6.tagAlign.gz 40000000 310 0.692702288517445 105 0.5758222 1500 0.427279 1.621194 1.786842 2 GM19239-H3K27AC_subsample-20e6.tagAlign.gz 40000000 310 0.692854484977641 105 0.5757883 1500 0.4271423 1.622069 1.787551 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-H3K27AC_subsample-25e6.cc.plot.pdf

./GM19239-H3K27AC_subsample-25e6.cc.plot.pdf

./GM19239-H3K27AC_subsample-25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-H3K27AC_subsample-25e6.tagAlign.gz 50000000 310 0.730014074367033 105 0.6115426 1500 0.45384 1.608528 1.751233 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-H3K27AC_subsample-30e6.cc.plot.pdf

./GM19239-H3K27AC_subsample-30e6.cc.plot.pdf

./GM19239-H3K27AC_subsample-30e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-H3K27AC_subsample-30e6.tagAlign.gz 60000000 310 0.756390336054063 105 0.638089 1500 0.4740686 1.595529 1.72126 2 GM19239-H3K27AC_subsample-30e6.tagAlign.gz 60000000 310 0.756413678969371 105 0.637976 1500 0.4740008 1.595807 1.72229 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-H3K27AC_subsample-40e6.cc.plot.pdf

./GM19239-H3K27AC_subsample-40e6.cc.plot.pdf

./GM19239-H3K27AC_subsample-40e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-H3K27AC_subsample-40e6.tagAlign.gz 80000000 310 0.790598746153484 105 0.673992 1500 0.502007 1.574876 1.678005 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-H3K27AC_subsample-5e6.cc.plot.pdf

./GM19239-H3K27AC_subsample-5e6.cc.plot.pdf

./GM19239-H3K27AC_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-H3K27AC_subsample-5e6.tagAlign.gz 10000000 310 0.392883468084381 105 0.3087471 1500 0.2288426 1.716828 2.052962 2 GM19239-H3K27AC_subsample-5e6.tagAlign.gz 10000000 315 0.392606288472542 105 0.3089443 1500 0.229219 1.7128 2.049378 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-H3K27AC_subsample-7.5e6.cc.plot.pdf

./GM19239-H3K27AC_subsample-7.5e6.cc.plot.pdf

./GM19239-H3K27AC_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-H3K27AC_subsample-7.5e6.tagAlign.gz 15000000 315 0.483456112641467 105 0.3884124 1500 0.2877378 1.680197 1.944068 2 GM19239-H3K27AC_subsample-7.5e6.tagAlign.gz 15000000 310 0.484049799331766 105 0.3885916 1500 0.2882163 1.679467 1.951013 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-H3K27ME3_merged.cc.plot.pdf

./GM19239-H3K27ME3_merged.cc.plot.pdf

./GM19239-H3K27ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-H3K27ME3_merged.tagAlign.gz 231939706 315 0.780846814444673 105 0.7681412 1500 0.7586407 1.029271 2.337367 2 GM19239-H3K27ME3_merged.tagAlign.gz 231939706 315 0.780846814444673 105 0.7681412 1500 0.7586407 1.029271 2.337367 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-H3K27ME3_subsample-0.1e6.cc.plot.pdf

./GM19239-H3K27ME3_subsample-0.1e6.cc.plot.pdf

./GM19239-H3K27ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-H3K27ME3_subsample-0.1e6.tagAlign.gz 200000 320 0.0382686236808969 105 0.003287725 1500 0.00312023 12.26468 209.8485 2 GM19239-H3K27ME3_subsample-0.1e6.tagAlign.gz 200000 305 0.0386071778541981 105 0.003288922 1500 0.003275026 11.78836 2542.701 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-H3K27ME3_subsample-0.25e6.cc.plot.pdf

./GM19239-H3K27ME3_subsample-0.25e6.cc.plot.pdf

./GM19239-H3K27ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-H3K27ME3_subsample-0.25e6.tagAlign.gz 500000 315 0.0426916346931833 100 0.007715758 1500 0.007512738 5.682567 173.2774 2 GM19239-H3K27ME3_subsample-0.25e6.tagAlign.gz 500000 310 0.0426702644159001 105 0.007839222 1500 0.007574765 5.633213 132.7077 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-H3K27ME3_subsample-0.5e6.cc.plot.pdf

./GM19239-H3K27ME3_subsample-0.5e6.cc.plot.pdf

./GM19239-H3K27ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-H3K27ME3_subsample-0.5e6.tagAlign.gz 1000000 310 0.0498014379740863 105 0.0152924 1500 0.01496776 3.327246 107.2997 2 GM19239-H3K27ME3_subsample-0.5e6.tagAlign.gz 1000000 315 0.0501972317131526 105 0.01531665 1500 0.01498799 3.349163 107.132 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-H3K27ME3_subsample-10e6.cc.plot.pdf

./GM19239-H3K27ME3_subsample-10e6.cc.plot.pdf

./GM19239-H3K27ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-H3K27ME3_subsample-10e6.tagAlign.gz 20000000 315 0.261769876262092 105 0.233454 1500 0.2299908 1.138176 9.176251 2 GM19239-H3K27ME3_subsample-10e6.tagAlign.gz 20000000 315 0.261767269294688 105 0.233401 1500 0.23003 1.13797 9.414667 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-H3K27ME3_subsample-15e6.cc.plot.pdf

./GM19239-H3K27ME3_subsample-15e6.cc.plot.pdf

./GM19239-H3K27ME3_subsample-15e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-H3K27ME3_subsample-15e6.tagAlign.gz 30000000 315 0.338507521106058 105 0.3123791 1500 0.3080901 1.098729 7.091978 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-H3K27ME3_subsample-1e6.cc.plot.pdf

./GM19239-H3K27ME3_subsample-1e6.cc.plot.pdf

./GM19239-H3K27ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-H3K27ME3_subsample-1e6.tagAlign.gz 2000000 320 0.0645158320588372 105 0.02992338 1500 0.02931453 2.200814 57.81562 2 GM19239-H3K27ME3_subsample-1e6.tagAlign.gz 2000000 315 0.0644918875446557 105 0.02990699 1500 0.02936774 2.196011 65.13514 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-H3K27ME3_subsample-2.5e6.cc.plot.pdf

./GM19239-H3K27ME3_subsample-2.5e6.cc.plot.pdf

./GM19239-H3K27ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-H3K27ME3_subsample-2.5e6.tagAlign.gz 5000000 320 0.104446246591564 100 0.07135764 1500 0.07017706 1.488325 29.02742 2 GM19239-H3K27ME3_subsample-2.5e6.tagAlign.gz 5000000 315 0.104629292938777 100 0.07142731 1500 0.07005617 1.493506 25.21481 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-H3K27ME3_subsample-20e6.cc.plot.pdf

./GM19239-H3K27ME3_subsample-20e6.cc.plot.pdf

./GM19239-H3K27ME3_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-H3K27ME3_subsample-20e6.tagAlign.gz 40000000 315 0.400468745058907 105 0.3762804 1500 0.3713827 1.078318 5.938612 2 GM19239-H3K27ME3_subsample-20e6.tagAlign.gz 40000000 315 0.400498245221857 105 0.3763611 1500 0.3712951 1.078652 5.764563 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-H3K27ME3_subsample-25e6.cc.plot.pdf

./GM19239-H3K27ME3_subsample-25e6.cc.plot.pdf

./GM19239-H3K27ME3_subsample-25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-H3K27ME3_subsample-25e6.tagAlign.gz 50000000 315 0.451640357886873 105 0.4289662 1500 0.4233864 1.066733 5.063647 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-H3K27ME3_subsample-30e6.cc.plot.pdf

./GM19239-H3K27ME3_subsample-30e6.cc.plot.pdf

./GM19239-H3K27ME3_subsample-30e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-H3K27ME3_subsample-30e6.tagAlign.gz 60000000 315 0.494587848479077 105 0.4731609 1500 0.4671385 1.058761 4.557856 2 GM19239-H3K27ME3_subsample-30e6.tagAlign.gz 60000000 315 0.494609404040057 105 0.4732637 1500 0.4671271 1.058833 4.478421 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-H3K27ME3_subsample-40e6.cc.plot.pdf

./GM19239-H3K27ME3_subsample-40e6.cc.plot.pdf

./GM19239-H3K27ME3_subsample-40e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-H3K27ME3_subsample-40e6.tagAlign.gz 80000000 315 0.562723323663752 105 0.5433556 1500 0.5364292 1.049017 3.796232 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-H3K27ME3_subsample-5e6.cc.plot.pdf

./GM19239-H3K27ME3_subsample-5e6.cc.plot.pdf

./GM19239-H3K27ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-H3K27ME3_subsample-5e6.tagAlign.gz 10000000 315 0.164185836281074 105 0.1328674 1500 0.1307104 1.256104 15.51971 2 GM19239-H3K27ME3_subsample-5e6.tagAlign.gz 10000000 315 0.164006984193675 105 0.132726 1500 0.1306828 1.255001 16.30991 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-H3K27ME3_subsample-7.5e6.cc.plot.pdf

./GM19239-H3K27ME3_subsample-7.5e6.cc.plot.pdf

./GM19239-H3K27ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-H3K27ME3_subsample-7.5e6.tagAlign.gz 15000000 315 0.21615256461155 105 0.1864462 1500 0.1834993 1.177948 11.08064 2 GM19239-H3K27ME3_subsample-7.5e6.tagAlign.gz 15000000 315 0.216095102764133 105 0.186374 1500 0.1835987 1.176997 11.70917 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-H3K36ME3_merged.cc.plot.pdf

./GM19239-H3K36ME3_merged.cc.plot.pdf

./GM19239-H3K36ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-H3K36ME3_merged.tagAlign.gz 118792204 305 0.698478976534198 105 0.6801948 1500 0.6632784 1.053071 2.080863 2 GM19239-H3K36ME3_merged.tagAlign.gz 118792204 305 0.698478976534198 105 0.6801948 1500 0.6632784 1.053071 2.080863 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-H3K36ME3_subsample-0.1e6.cc.plot.pdf

./GM19239-H3K36ME3_subsample-0.1e6.cc.plot.pdf

./GM19239-H3K36ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-H3K36ME3_subsample-0.1e6.tagAlign.gz 200000 295 0.0390754868381462 95 0.004003593 1500 0.003824283 10.21773 196.5947 2 GM19239-H3K36ME3_subsample-0.1e6.tagAlign.gz 200000 300 0.0395668968981591 95 0.004194528 1500 0.003807136 10.39282 92.30905 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-H3K36ME3_subsample-0.25e6.cc.plot.pdf

./GM19239-H3K36ME3_subsample-0.25e6.cc.plot.pdf

./GM19239-H3K36ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-H3K36ME3_subsample-0.25e6.tagAlign.gz 500000 295 0.0450243649242833 105 0.009720135 1500 0.00935976 4.810419 98.96534 2 GM19239-H3K36ME3_subsample-0.25e6.tagAlign.gz 500000 300 0.0458703144756006 95 0.009831271 1500 0.009495177 4.830907 108.2291 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-H3K36ME3_subsample-0.5e6.cc.plot.pdf

./GM19239-H3K36ME3_subsample-0.5e6.cc.plot.pdf

./GM19239-H3K36ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-H3K36ME3_subsample-0.5e6.tagAlign.gz 1000000 305 0.054447184497008 95 0.01937114 1500 0.01870392 2.911005 53.56983 2 GM19239-H3K36ME3_subsample-0.5e6.tagAlign.gz 1000000 305 0.0545870323825965 100 0.01921771 1500 0.01848834 2.952511 49.49338 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-H3K36ME3_subsample-10e6.cc.plot.pdf

./GM19239-H3K36ME3_subsample-10e6.cc.plot.pdf

./GM19239-H3K36ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-H3K36ME3_subsample-10e6.tagAlign.gz 20000000 300 0.305165577297336 105 0.276843 1500 0.2694591 1.132512 4.835694 2 GM19239-H3K36ME3_subsample-10e6.tagAlign.gz 20000000 305 0.305449910544796 105 0.276799 1500 0.2694898 1.133438 4.919891 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-H3K36ME3_subsample-15e6.cc.plot.pdf

./GM19239-H3K36ME3_subsample-15e6.cc.plot.pdf

./GM19239-H3K36ME3_subsample-15e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-H3K36ME3_subsample-15e6.tagAlign.gz 30000000 300 0.389137318427922 105 0.3627211 1500 0.3533676 1.101225 3.824202 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-H3K36ME3_subsample-1e6.cc.plot.pdf

./GM19239-H3K36ME3_subsample-1e6.cc.plot.pdf

./GM19239-H3K36ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-H3K36ME3_subsample-1e6.tagAlign.gz 2000000 295 0.0721036519486572 105 0.0376578 1500 0.03639753 1.981004 28.33224 2 GM19239-H3K36ME3_subsample-1e6.tagAlign.gz 2000000 300 0.072428956180739 105 0.03747884 1500 0.03658625 1.979677 40.15595 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-H3K36ME3_subsample-2.5e6.cc.plot.pdf

./GM19239-H3K36ME3_subsample-2.5e6.cc.plot.pdf

./GM19239-H3K36ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-H3K36ME3_subsample-2.5e6.tagAlign.gz 5000000 300 0.122084731548578 105 0.08857196 1500 0.0863881 1.413212 16.34563 2 GM19239-H3K36ME3_subsample-2.5e6.tagAlign.gz 5000000 300 0.122037889629131 105 0.0885687 1500 0.08623821 1.415125 15.36147 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-H3K36ME3_subsample-20e6.cc.plot.pdf

./GM19239-H3K36ME3_subsample-20e6.cc.plot.pdf

./GM19239-H3K36ME3_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-H3K36ME3_subsample-20e6.tagAlign.gz 40000000 305 0.454330729731436 105 0.4295059 1500 0.4184119 1.085846 3.237667 2 GM19239-H3K36ME3_subsample-20e6.tagAlign.gz 40000000 305 0.454197133148953 105 0.4295807 1500 0.4184674 1.085382 3.215055 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-H3K36ME3_subsample-25e6.cc.plot.pdf

./GM19239-H3K36ME3_subsample-25e6.cc.plot.pdf

./GM19239-H3K36ME3_subsample-25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-H3K36ME3_subsample-25e6.tagAlign.gz 50000000 300 0.506416749018237 105 0.4830417 1500 0.4707599 1.075743 2.903215 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-H3K36ME3_subsample-30e6.cc.plot.pdf

./GM19239-H3K36ME3_subsample-30e6.cc.plot.pdf

./GM19239-H3K36ME3_subsample-30e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-H3K36ME3_subsample-30e6.tagAlign.gz 60000000 300 0.549215899174792 105 0.5269656 1500 0.5134935 1.069567 2.651584 2 GM19239-H3K36ME3_subsample-30e6.tagAlign.gz 60000000 300 0.549170203153268 105 0.5268765 1500 0.5134052 1.069662 2.6549 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-H3K36ME3_subsample-40e6.cc.plot.pdf

./GM19239-H3K36ME3_subsample-40e6.cc.plot.pdf

./GM19239-H3K36ME3_subsample-40e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-H3K36ME3_subsample-40e6.tagAlign.gz 80000000 305 0.615037058000332 105 0.5945674 1500 0.5795341 1.061261 2.361626 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-H3K36ME3_subsample-5e6.cc.plot.pdf

./GM19239-H3K36ME3_subsample-5e6.cc.plot.pdf

./GM19239-H3K36ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-H3K36ME3_subsample-5e6.tagAlign.gz 10000000 300 0.1933339926151 105 0.1621134 1500 0.1576506 1.226345 7.995707 2 GM19239-H3K36ME3_subsample-5e6.tagAlign.gz 10000000 300 0.193313964504356 105 0.1619112 1500 0.1576019 1.226597 8.287142 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-H3K36ME3_subsample-7.5e6.cc.plot.pdf

./GM19239-H3K36ME3_subsample-7.5e6.cc.plot.pdf

./GM19239-H3K36ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-H3K36ME3_subsample-7.5e6.tagAlign.gz 15000000 300 0.253539827048008 105 0.2237454 1500 0.21786 1.163774 6.062377 2 GM19239-H3K36ME3_subsample-7.5e6.tagAlign.gz 15000000 300 0.25355456458864 100 0.2235421 1500 0.2178798 1.163736 6.300495 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-H3K4ME1_merged.cc.plot.pdf

./GM19239-H3K4ME1_merged.cc.plot.pdf

./GM19239-H3K4ME1_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-H3K4ME1_merged.tagAlign.gz 134489590 300 0.776344050275084 105 0.7265572 1500 0.6178756 1.256473 1.458098 1 GM19239-H3K4ME1_merged.tagAlign.gz 134489590 300 0.776344050275084 105 0.7265572 1500 0.6178756 1.256473 1.458098 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-H3K4ME1_subsample-0.1e6.cc.plot.pdf

./GM19239-H3K4ME1_subsample-0.1e6.cc.plot.pdf

./GM19239-H3K4ME1_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-H3K4ME1_subsample-0.1e6.tagAlign.gz 200000 300 0.0438359202515466 105 0.005269119 1500 0.004374262 10.02133 44.09827 2 GM19239-H3K4ME1_subsample-0.1e6.tagAlign.gz 200000 300 0.0429113358432718 95 0.005096866 1500 0.004310275 9.955592 49.07388 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-H3K4ME1_subsample-0.25e6.cc.plot.pdf

./GM19239-H3K4ME1_subsample-0.25e6.cc.plot.pdf

./GM19239-H3K4ME1_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-H3K4ME1_subsample-0.25e6.tagAlign.gz 500000 295 0.0505783555188612 100 0.01278721 1500 0.01088304 4.647447 20.84654 2 GM19239-H3K4ME1_subsample-0.25e6.tagAlign.gz 500000 295 0.0509155570842651 95 0.01282607 1500 0.01071543 4.751612 19.0464 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-H3K4ME1_subsample-0.5e6.cc.plot.pdf

./GM19239-H3K4ME1_subsample-0.5e6.cc.plot.pdf

./GM19239-H3K4ME1_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-H3K4ME1_subsample-0.5e6.tagAlign.gz 1000000 295 0.0629982689002533 100 0.0246828 1500 0.02090682 3.013288 11.14717 2 GM19239-H3K4ME1_subsample-0.5e6.tagAlign.gz 1000000 295 0.0629452175496958 105 0.02502134 1500 0.02099436 2.998196 10.41746 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-H3K4ME1_subsample-10e6.cc.plot.pdf

./GM19239-H3K4ME1_subsample-10e6.cc.plot.pdf

./GM19239-H3K4ME1_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-H3K4ME1_subsample-10e6.tagAlign.gz 20000000 295 0.369833641918018 105 0.3264778 1500 0.2778394 1.331106 1.89139 2 GM19239-H3K4ME1_subsample-10e6.tagAlign.gz 20000000 300 0.369946496340378 105 0.3267361 1500 0.2779749 1.330863 1.886166 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-H3K4ME1_subsample-15e6.cc.plot.pdf

./GM19239-H3K4ME1_subsample-15e6.cc.plot.pdf

./GM19239-H3K4ME1_subsample-15e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-H3K4ME1_subsample-15e6.tagAlign.gz 30000000 300 0.460789272886266 105 0.4161133 1500 0.3538508 1.302214 1.717543 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-H3K4ME1_subsample-1e6.cc.plot.pdf

./GM19239-H3K4ME1_subsample-1e6.cc.plot.pdf

./GM19239-H3K4ME1_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-H3K4ME1_subsample-1e6.tagAlign.gz 2000000 300 0.0864378165450083 105 0.04801215 1500 0.04101048 2.107701 6.488066 2 GM19239-H3K4ME1_subsample-1e6.tagAlign.gz 2000000 295 0.0866254230819274 105 0.04797634 1500 0.04089535 2.118222 6.458143 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-H3K4ME1_subsample-2.5e6.cc.plot.pdf

./GM19239-H3K4ME1_subsample-2.5e6.cc.plot.pdf

./GM19239-H3K4ME1_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-H3K4ME1_subsample-2.5e6.tagAlign.gz 5000000 295 0.15079387712978 105 0.111493 1500 0.0947337 1.591766 3.34501 2 GM19239-H3K4ME1_subsample-2.5e6.tagAlign.gz 5000000 300 0.150843366887494 100 0.1113772 1500 0.09477929 1.591522 3.377778 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-H3K4ME1_subsample-20e6.cc.plot.pdf

./GM19239-H3K4ME1_subsample-20e6.cc.plot.pdf

./GM19239-H3K4ME1_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-H3K4ME1_subsample-20e6.tagAlign.gz 40000000 300 0.528163683325624 105 0.4821527 1500 0.4100248 1.288126 1.637908 2 GM19239-H3K4ME1_subsample-20e6.tagAlign.gz 40000000 300 0.528123947814047 105 0.4820113 1500 0.4099318 1.288322 1.639746 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-H3K4ME1_subsample-25e6.cc.plot.pdf

./GM19239-H3K4ME1_subsample-25e6.cc.plot.pdf

./GM19239-H3K4ME1_subsample-25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-H3K4ME1_subsample-25e6.tagAlign.gz 50000000 300 0.579925544981734 105 0.5330901 1500 0.4532758 1.27941 1.586804 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-H3K4ME1_subsample-30e6.cc.plot.pdf

./GM19239-H3K4ME1_subsample-30e6.cc.plot.pdf

./GM19239-H3K4ME1_subsample-30e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-H3K4ME1_subsample-30e6.tagAlign.gz 60000000 300 0.621126863070781 105 0.5734383 1500 0.4874856 1.274144 1.554824 2 GM19239-H3K4ME1_subsample-30e6.tagAlign.gz 60000000 300 0.621158430319143 105 0.57347 1500 0.4876636 1.273744 1.555768 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-H3K4ME1_subsample-40e6.cc.plot.pdf

./GM19239-H3K4ME1_subsample-40e6.cc.plot.pdf

./GM19239-H3K4ME1_subsample-40e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-H3K4ME1_subsample-40e6.tagAlign.gz 80000000 300 0.682309124806951 105 0.6336821 1500 0.5387639 1.266434 1.512304 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-H3K4ME1_subsample-5e6.cc.plot.pdf

./GM19239-H3K4ME1_subsample-5e6.cc.plot.pdf

./GM19239-H3K4ME1_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-H3K4ME1_subsample-5e6.tagAlign.gz 10000000 295 0.239817745375707 105 0.1988362 1500 0.1690353 1.418744 2.375179 2 GM19239-H3K4ME1_subsample-5e6.tagAlign.gz 10000000 300 0.239826282889449 105 0.1985695 1500 0.1688988 1.41994 2.390489 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-H3K4ME1_subsample-7.5e6.cc.plot.pdf

./GM19239-H3K4ME1_subsample-7.5e6.cc.plot.pdf

./GM19239-H3K4ME1_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-H3K4ME1_subsample-7.5e6.tagAlign.gz 15000000 295 0.311023656994814 105 0.2688101 1500 0.2286504 1.360258 2.051145 2 GM19239-H3K4ME1_subsample-7.5e6.tagAlign.gz 15000000 295 0.311224008473372 105 0.2689513 1500 0.2285367 1.361812 2.045976 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-H3K4ME3_merged.cc.plot.pdf

./GM19239-H3K4ME3_merged.cc.plot.pdf

./GM19239-H3K4ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-H3K4ME3_merged.tagAlign.gz 153260068 330 0.887978335523542 105 0.7597799 1500 0.4545536 1.953517 1.420011 1 GM19239-H3K4ME3_merged.tagAlign.gz 153260068 330 0.887978335523542 105 0.7597799 1500 0.4545536 1.953517 1.420011 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-H3K4ME3_subsample-0.1e6.cc.plot.pdf

./GM19239-H3K4ME3_subsample-0.1e6.cc.plot.pdf

./GM19239-H3K4ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-H3K4ME3_subsample-0.1e6.tagAlign.gz 200000 305 0.0565821794483759 100 0.01552623 1500 0.008955314 6.31828 7.248134 2 GM19239-H3K4ME3_subsample-0.1e6.tagAlign.gz 200000 300 0.0565419897056687 95 0.01505218 1500 0.009028326 6.262732 7.88759 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-H3K4ME3_subsample-0.25e6.cc.plot.pdf

./GM19239-H3K4ME3_subsample-0.25e6.cc.plot.pdf

./GM19239-H3K4ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-H3K4ME3_subsample-0.25e6.tagAlign.gz 500000 300 0.0809822452151184 105 0.03691082 1500 0.02144963 3.775462 3.850453 2 GM19239-H3K4ME3_subsample-0.25e6.tagAlign.gz 500000 310 0.0814983116644515 105 0.03708067 1500 0.02152195 3.786753 3.85484 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-H3K4ME3_subsample-0.5e6.cc.plot.pdf

./GM19239-H3K4ME3_subsample-0.5e6.cc.plot.pdf

./GM19239-H3K4ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-H3K4ME3_subsample-0.5e6.tagAlign.gz 1000000 315 0.119280672228324 100 0.07017671 1500 0.04198659 2.840923 2.741885 2 GM19239-H3K4ME3_subsample-0.5e6.tagAlign.gz 1000000 315 0.118863506229733 105 0.06991969 1500 0.04125521 2.881176 2.707473 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-H3K4ME3_subsample-10e6.cc.plot.pdf

./GM19239-H3K4ME3_subsample-10e6.cc.plot.pdf

./GM19239-H3K4ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-H3K4ME3_subsample-10e6.tagAlign.gz 20000000 320 0.645129544390253 105 0.5231221 1500 0.3097637 2.082651 1.571843 2 GM19239-H3K4ME3_subsample-10e6.tagAlign.gz 20000000 325 0.645426659472974 105 0.5233849 1500 0.3101015 2.08134 1.572205 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-H3K4ME3_subsample-1e6.cc.plot.pdf

./GM19239-H3K4ME3_subsample-1e6.cc.plot.pdf

./GM19239-H3K4ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-H3K4ME3_subsample-1e6.tagAlign.gz 2000000 315 0.186507750047322 105 0.1280766 1500 0.07568966 2.464111 2.115375 2 GM19239-H3K4ME3_subsample-1e6.tagAlign.gz 2000000 310 0.186453353649813 105 0.1283453 1500 0.07596986 2.454307 2.109453 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-H3K4ME3_subsample-2.5e6.cc.plot.pdf

./GM19239-H3K4ME3_subsample-2.5e6.cc.plot.pdf

./GM19239-H3K4ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-H3K4ME3_subsample-2.5e6.tagAlign.gz 5000000 320 0.337361074769178 105 0.2576917 1500 0.1526704 2.209734 1.758602 2 GM19239-H3K4ME3_subsample-2.5e6.tagAlign.gz 5000000 315 0.337267914074332 105 0.2582135 1500 0.1531 2.202925 1.752086 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-H3K4ME3_subsample-20e6.cc.plot.pdf

./GM19239-H3K4ME3_subsample-20e6.cc.plot.pdf

./GM19239-H3K4ME3_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-H3K4ME3_subsample-20e6.tagAlign.gz 40000000 330 0.772058586849768 105 0.6330034 1500 0.3748148 2.05984 1.53858 2 GM19239-H3K4ME3_subsample-20e6.tagAlign.gz 40000000 325 0.772014316406044 105 0.6329179 1500 0.3747275 2.060202 1.538736 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-H3K4ME3_subsample-30e6.cc.plot.pdf

./GM19239-H3K4ME3_subsample-30e6.cc.plot.pdf

./GM19239-H3K4ME3_subsample-30e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-H3K4ME3_subsample-30e6.tagAlign.gz 60000000 330 0.825904945084426 105 0.6820255 1500 0.4038814 2.044919 1.517284 2 GM19239-H3K4ME3_subsample-30e6.tagAlign.gz 60000000 325 0.82610048636373 105 0.6819624 1500 0.4040021 2.044793 1.518556 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-H3K4ME3_subsample-5e6.cc.plot.pdf

./GM19239-H3K4ME3_subsample-5e6.cc.plot.pdf

./GM19239-H3K4ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-H3K4ME3_subsample-5e6.tagAlign.gz 10000000 325 0.490004999070829 105 0.3894543 1500 0.2304513 2.126284 1.632382 2 GM19239-H3K4ME3_subsample-5e6.tagAlign.gz 10000000 325 0.489165114291527 105 0.3888228 1500 0.2300965 2.125913 1.632172 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-H3K4ME3_subsample-7.5e6.cc.plot.pdf

./GM19239-H3K4ME3_subsample-7.5e6.cc.plot.pdf

./GM19239-H3K4ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-H3K4ME3_subsample-7.5e6.tagAlign.gz 15000000 325 0.582776995538106 105 0.4694187 1500 0.2776274 2.099133 1.59105 2 GM19239-H3K4ME3_subsample-7.5e6.tagAlign.gz 15000000 330 0.582885985098714 105 0.4693433 1500 0.2778779 2.097633 1.593019 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-H3K9ME3_merged.cc.plot.pdf

./GM19239-H3K9ME3_merged.cc.plot.pdf

./GM19239-H3K9ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-H3K9ME3_merged.tagAlign.gz 82333126 315 0.562336303580146 105 0.5433949 1500 0.5296768 1.061659 2.380765 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-H3K9ME3_subsample-0.1e6.cc.plot.pdf

./GM19239-H3K9ME3_subsample-0.1e6.cc.plot.pdf

./GM19239-H3K9ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-H3K9ME3_subsample-0.1e6.tagAlign.gz 200000 315 0.0395198858331892 95 0.004411808 1500 0.003308099 11.9464 32.80919 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-H3K9ME3_subsample-0.25e6.cc.plot.pdf

./GM19239-H3K9ME3_subsample-0.25e6.cc.plot.pdf

./GM19239-H3K9ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-H3K9ME3_subsample-0.25e6.tagAlign.gz 500000 305 0.0462019799177395 100 0.01052036 1500 0.007676511 6.018617 13.54695 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-H3K9ME3_subsample-0.5e6.cc.plot.pdf

./GM19239-H3K9ME3_subsample-0.5e6.cc.plot.pdf

./GM19239-H3K9ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-H3K9ME3_subsample-0.5e6.tagAlign.gz 1000000 325 0.0569502683243241 105 0.02103414 1500 0.01517223 3.753585 7.127041 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-H3K9ME3_subsample-10e6.cc.plot.pdf

./GM19239-H3K9ME3_subsample-10e6.cc.plot.pdf

./GM19239-H3K9ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-H3K9ME3_subsample-10e6.tagAlign.gz 20000000 315 0.259412486754725 105 0.2309595 1500 0.2238874 1.158674 5.023301 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-H3K9ME3_subsample-15e6.cc.plot.pdf

./GM19239-H3K9ME3_subsample-15e6.cc.plot.pdf

./GM19239-H3K9ME3_subsample-15e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-H3K9ME3_subsample-15e6.tagAlign.gz 30000000 305 0.334426184602273 105 0.3085053 1500 0.2999337 1.115001 4.024009 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-H3K9ME3_subsample-1e6.cc.plot.pdf

./GM19239-H3K9ME3_subsample-1e6.cc.plot.pdf

./GM19239-H3K9ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-H3K9ME3_subsample-1e6.tagAlign.gz 2000000 315 0.0713656942996194 105 0.03636756 1500 0.02975803 2.3982 6.295101 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-H3K9ME3_subsample-2.5e6.cc.plot.pdf

./GM19239-H3K9ME3_subsample-2.5e6.cc.plot.pdf

./GM19239-H3K9ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-H3K9ME3_subsample-2.5e6.tagAlign.gz 5000000 315 0.108334641439888 105 0.07522781 1500 0.07061825 1.534089 8.182213 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-H3K9ME3_subsample-20e6.cc.plot.pdf

./GM19239-H3K9ME3_subsample-20e6.cc.plot.pdf

./GM19239-H3K9ME3_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-H3K9ME3_subsample-20e6.tagAlign.gz 40000000 305 0.395240551358044 105 0.3711843 1500 0.3613379 1.093825 3.443142 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-H3K9ME3_subsample-25e6.cc.plot.pdf

./GM19239-H3K9ME3_subsample-25e6.cc.plot.pdf

./GM19239-H3K9ME3_subsample-25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-H3K9ME3_subsample-25e6.tagAlign.gz 50000000 315 0.445638270899608 105 0.4230645 1500 0.4121267 1.081314 3.063827 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-H3K9ME3_subsample-30e6.cc.plot.pdf

./GM19239-H3K9ME3_subsample-30e6.cc.plot.pdf

./GM19239-H3K9ME3_subsample-30e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-H3K9ME3_subsample-30e6.tagAlign.gz 60000000 315 0.488027744670024 105 0.4667404 1500 0.4548297 1.07299 2.787252 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-H3K9ME3_subsample-40e6.cc.plot.pdf

./GM19239-H3K9ME3_subsample-40e6.cc.plot.pdf

./GM19239-H3K9ME3_subsample-40e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-H3K9ME3_subsample-40e6.tagAlign.gz 80000000 305 0.555605980860323 105 0.5364713 1500 0.5229142 1.062518 2.411411 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-H3K9ME3_subsample-5e6.cc.plot.pdf

./GM19239-H3K9ME3_subsample-5e6.cc.plot.pdf

./GM19239-H3K9ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-H3K9ME3_subsample-5e6.tagAlign.gz 10000000 305 0.16504944754106 105 0.1335903 1500 0.1282588 1.286847 6.900699 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM19239-H3K9ME3_subsample-7.5e6.cc.plot.pdf

./GM19239-H3K9ME3_subsample-7.5e6.cc.plot.pdf

./GM19239-H3K9ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM19239-H3K9ME3_subsample-7.5e6.tagAlign.gz 15000000 315 0.214571940568483 105 0.1848958 1500 0.1787153 1.200636 5.801565 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM2610-H3K27AC_merged.cc.plot.pdf

./GM2610-H3K27AC_merged.cc.plot.pdf

./GM2610-H3K27AC_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM2610-H3K27AC_merged.tagAlign.gz 105600560 275 0.736687655812864 105 0.6572556 1500 0.5116967 1.439696 1.545704 2 GM2610-H3K27AC_merged.tagAlign.gz 105600560 275 0.736687655812864 105 0.6572556 1500 0.5116967 1.439696 1.545704 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM2610-H3K27AC_subsample-0.1e6.cc.plot.pdf

./GM2610-H3K27AC_subsample-0.1e6.cc.plot.pdf

./GM2610-H3K27AC_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM2610-H3K27AC_subsample-0.1e6.tagAlign.gz 200000 260 0.0446603693031618 105 0.007606624 1500 0.005458898 8.181207 18.25254 2 GM2610-H3K27AC_subsample-0.1e6.tagAlign.gz 200000 235 0.0435500949617702 105 0.007792661 1500 0.005622661 7.74546 17.47808 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM2610-H3K27AC_subsample-0.25e6.cc.plot.pdf

./GM2610-H3K27AC_subsample-0.25e6.cc.plot.pdf

./GM2610-H3K27AC_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM2610-H3K27AC_subsample-0.25e6.tagAlign.gz 500000 245 0.0566580059336721 105 0.01900992 1500 0.01413428 4.008552 8.721674 2 GM2610-H3K27AC_subsample-0.25e6.tagAlign.gz 500000 265 0.0567555619130615 105 0.01841924 1500 0.01371995 4.136717 9.157906 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM2610-H3K27AC_subsample-0.5e6.cc.plot.pdf

./GM2610-H3K27AC_subsample-0.5e6.cc.plot.pdf

./GM2610-H3K27AC_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM2610-H3K27AC_subsample-0.5e6.tagAlign.gz 1000000 255 0.0759174913502913 105 0.03607737 1500 0.0273046 2.780392 5.541339 2 GM2610-H3K27AC_subsample-0.5e6.tagAlign.gz 1000000 270 0.0758364740223916 105 0.03603104 1500 0.02752592 2.755094 5.680172 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM2610-H3K27AC_subsample-10e6.cc.plot.pdf

./GM2610-H3K27AC_subsample-10e6.cc.plot.pdf

./GM2610-H3K27AC_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM2610-H3K27AC_subsample-10e6.tagAlign.gz 20000000 265 0.46059736621225 105 0.3830792 1500 0.2918832 1.578019 1.850017 2 GM2610-H3K27AC_subsample-10e6.tagAlign.gz 20000000 270 0.460858024425489 105 0.382826 1500 0.2919861 1.578356 1.859006 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM2610-H3K27AC_subsample-1e6.cc.plot.pdf

./GM2610-H3K27AC_subsample-1e6.cc.plot.pdf

./GM2610-H3K27AC_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM2610-H3K27AC_subsample-1e6.tagAlign.gz 2000000 265 0.112006867608619 105 0.06904615 1500 0.05252485 2.132455 3.600323 2 GM2610-H3K27AC_subsample-1e6.tagAlign.gz 2000000 265 0.112285101728569 105 0.0689966 1500 0.05253211 2.137456 3.629204 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM2610-H3K27AC_subsample-2.5e6.cc.plot.pdf

./GM2610-H3K27AC_subsample-2.5e6.cc.plot.pdf

./GM2610-H3K27AC_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM2610-H3K27AC_subsample-2.5e6.tagAlign.gz 5000000 265 0.20474122560454 105 0.1522142 1500 0.1155373 1.772079 2.432155 2 GM2610-H3K27AC_subsample-2.5e6.tagAlign.gz 5000000 270 0.204551137424298 105 0.1519279 1500 0.1155437 1.770335 2.446324 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM2610-H3K27AC_subsample-20e6.cc.plot.pdf

./GM2610-H3K27AC_subsample-20e6.cc.plot.pdf

./GM2610-H3K27AC_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM2610-H3K27AC_subsample-20e6.tagAlign.gz 40000000 270 0.602373519178058 105 0.5152202 1500 0.3936916 1.530065 1.717143 2 GM2610-H3K27AC_subsample-20e6.tagAlign.gz 40000000 275 0.602290343442284 105 0.5156062 1500 0.3936487 1.53002 1.710773 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM2610-H3K27AC_subsample-5e6.cc.plot.pdf

./GM2610-H3K27AC_subsample-5e6.cc.plot.pdf

./GM2610-H3K27AC_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM2610-H3K27AC_subsample-5e6.tagAlign.gz 10000000 265 0.31805673579728 105 0.2544656 1500 0.1932055 1.64621 2.038051 2 GM2610-H3K27AC_subsample-5e6.tagAlign.gz 10000000 270 0.317975855454909 105 0.2539601 1500 0.1935339 1.642998 2.059406 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM2610-H3K27AC_subsample-7.5e6.cc.plot.pdf

./GM2610-H3K27AC_subsample-7.5e6.cc.plot.pdf

./GM2610-H3K27AC_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM2610-H3K27AC_subsample-7.5e6.tagAlign.gz 15000000 270 0.39983699810124 105 0.3277803 1500 0.2494847 1.602651 1.920315 2 GM2610-H3K27AC_subsample-7.5e6.tagAlign.gz 15000000 270 0.399496709694683 105 0.3276433 1500 0.2497017 1.599896 1.921888 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM2610-H3K27ME3_merged.cc.plot.pdf

./GM2610-H3K27ME3_merged.cc.plot.pdf

./GM2610-H3K27ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM2610-H3K27ME3_merged.tagAlign.gz 171711032 220 0.714844191353991 105 0.7029062 1500 0.6979299 1.024235 3.398987 2 GM2610-H3K27ME3_merged.tagAlign.gz 171711032 220 0.714844191353991 105 0.7029062 1500 0.6979299 1.024235 3.398987 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM2610-H3K27ME3_subsample-0.1e6.cc.plot.pdf

./GM2610-H3K27ME3_subsample-0.1e6.cc.plot.pdf

./GM2610-H3K27ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM2610-H3K27ME3_subsample-0.1e6.tagAlign.gz 200000 220 0.0366199929946267 105 0.003258448 1500 0.003065238 11.94687 173.6699 2 GM2610-H3K27ME3_subsample-0.1e6.tagAlign.gz 200000 225 0.0365102229975468 105 0.003301834 1500 0.003095634 11.7941 162.0493 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM2610-H3K27ME3_subsample-0.25e6.cc.plot.pdf

./GM2610-H3K27ME3_subsample-0.25e6.cc.plot.pdf

./GM2610-H3K27ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM2610-H3K27ME3_subsample-0.25e6.tagAlign.gz 500000 220 0.040471234262039 105 0.00749593 1500 0.007273673 5.564071 149.3658 2 GM2610-H3K27ME3_subsample-0.25e6.tagAlign.gz 500000 225 0.0403963803105408 105 0.007620549 1500 0.007362437 5.486822 127.9828 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM2610-H3K27ME3_subsample-0.5e6.cc.plot.pdf

./GM2610-H3K27ME3_subsample-0.5e6.cc.plot.pdf

./GM2610-H3K27ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM2610-H3K27ME3_subsample-0.5e6.tagAlign.gz 1000000 215 0.0472359217105515 105 0.01482741 1500 0.01429741 3.303811 62.1473 2 GM2610-H3K27ME3_subsample-0.5e6.tagAlign.gz 1000000 215 0.0473330064741844 105 0.01486569 1500 0.01442555 3.281191 74.76653 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM2610-H3K27ME3_subsample-10e6.cc.plot.pdf

./GM2610-H3K27ME3_subsample-10e6.cc.plot.pdf

./GM2610-H3K27ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM2610-H3K27ME3_subsample-10e6.tagAlign.gz 20000000 220 0.252178713838071 105 0.2259415 1500 0.2238594 1.126505 13.60129 2 GM2610-H3K27ME3_subsample-10e6.tagAlign.gz 20000000 220 0.252234284591013 105 0.2259362 1500 0.2238616 1.126742 13.6758 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM2610-H3K27ME3_subsample-1e6.cc.plot.pdf

./GM2610-H3K27ME3_subsample-1e6.cc.plot.pdf

./GM2610-H3K27ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM2610-H3K27ME3_subsample-1e6.tagAlign.gz 2000000 220 0.0612983728032871 105 0.02892474 1500 0.02834062 2.162916 56.42262 2 GM2610-H3K27ME3_subsample-1e6.tagAlign.gz 2000000 220 0.0608201283303587 105 0.02889136 1500 0.02832642 2.147117 57.51634 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM2610-H3K27ME3_subsample-2.5e6.cc.plot.pdf

./GM2610-H3K27ME3_subsample-2.5e6.cc.plot.pdf

./GM2610-H3K27ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM2610-H3K27ME3_subsample-2.5e6.tagAlign.gz 5000000 220 0.0998899304569216 105 0.06879479 1500 0.06795279 1.46999 37.93006 2 GM2610-H3K27ME3_subsample-2.5e6.tagAlign.gz 5000000 215 0.0997258916724852 105 0.06875829 1500 0.06777063 1.471521 32.35467 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM2610-H3K27ME3_subsample-20e6.cc.plot.pdf

./GM2610-H3K27ME3_subsample-20e6.cc.plot.pdf

./GM2610-H3K27ME3_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM2610-H3K27ME3_subsample-20e6.tagAlign.gz 40000000 220 0.388253727272413 105 0.3662606 1500 0.3632325 1.068885 8.26287 2 GM2610-H3K27ME3_subsample-20e6.tagAlign.gz 40000000 220 0.388320374091225 105 0.3661863 1500 0.3633078 1.068847 8.689526 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM2610-H3K27ME3_subsample-5e6.cc.plot.pdf

./GM2610-H3K27ME3_subsample-5e6.cc.plot.pdf

./GM2610-H3K27ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM2610-H3K27ME3_subsample-5e6.tagAlign.gz 10000000 220 0.157171217701625 105 0.1281086 1500 0.126608 1.2414 20.36755 2 GM2610-H3K27ME3_subsample-5e6.tagAlign.gz 10000000 220 0.157237264572225 105 0.128074 1500 0.1267105 1.240917 22.38898 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM2610-H3K27ME3_subsample-7.5e6.cc.plot.pdf

./GM2610-H3K27ME3_subsample-7.5e6.cc.plot.pdf

./GM2610-H3K27ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM2610-H3K27ME3_subsample-7.5e6.tagAlign.gz 15000000 220 0.207526449699186 105 0.1800282 1500 0.1782584 1.164189 16.53703 2 GM2610-H3K27ME3_subsample-7.5e6.tagAlign.gz 15000000 215 0.207580463560241 105 0.1800918 1500 0.1782843 1.164323 16.20738 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM2610-H3K36ME3_merged.cc.plot.pdf

./GM2610-H3K36ME3_merged.cc.plot.pdf

./GM2610-H3K36ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM2610-H3K36ME3_merged.tagAlign.gz 150278490 250 0.71958537458577 105 0.7037633 1500 0.689462 1.043691 2.106334 2 GM2610-H3K36ME3_merged.tagAlign.gz 150278490 250 0.71958537458577 105 0.7037633 1500 0.689462 1.043691 2.106334 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM2610-H3K36ME3_subsample-0.1e6.cc.plot.pdf

./GM2610-H3K36ME3_subsample-0.1e6.cc.plot.pdf

./GM2610-H3K36ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM2610-H3K36ME3_subsample-0.1e6.tagAlign.gz 200000 245 0.0389817634429828 100 0.00375259 1500 0.003500334 11.13658 140.6565 2 GM2610-H3K36ME3_subsample-0.1e6.tagAlign.gz 200000 255 0.0389832227909554 105 0.00367622 1500 0.003494819 11.15457 195.636 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM2610-H3K36ME3_subsample-0.25e6.cc.plot.pdf

./GM2610-H3K36ME3_subsample-0.25e6.cc.plot.pdf

./GM2610-H3K36ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM2610-H3K36ME3_subsample-0.25e6.tagAlign.gz 500000 245 0.0429759232379925 100 0.008817733 1500 0.008500655 5.055602 108.7279 2 GM2610-H3K36ME3_subsample-0.25e6.tagAlign.gz 500000 250 0.0433234313072803 100 0.008751629 1500 0.008490312 5.10269 133.2982 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM2610-H3K36ME3_subsample-0.5e6.cc.plot.pdf

./GM2610-H3K36ME3_subsample-0.5e6.cc.plot.pdf

./GM2610-H3K36ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM2610-H3K36ME3_subsample-0.5e6.tagAlign.gz 1000000 250 0.0513873280301783 95 0.0172482 1500 0.01696382 3.029231 121.0466 2 GM2610-H3K36ME3_subsample-0.5e6.tagAlign.gz 1000000 240 0.0514738905730645 105 0.01727579 1500 0.01693141 3.040142 100.3037 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM2610-H3K36ME3_subsample-10e6.cc.plot.pdf

./GM2610-H3K36ME3_subsample-10e6.cc.plot.pdf

./GM2610-H3K36ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM2610-H3K36ME3_subsample-10e6.tagAlign.gz 20000000 255 0.283743349796152 105 0.2559548 1500 0.2503526 1.133375 5.960253 2 GM2610-H3K36ME3_subsample-10e6.tagAlign.gz 20000000 255 0.283848772578093 105 0.2561878 1500 0.2504042 1.133562 5.782661 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM2610-H3K36ME3_subsample-1e6.cc.plot.pdf

./GM2610-H3K36ME3_subsample-1e6.cc.plot.pdf

./GM2610-H3K36ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM2610-H3K36ME3_subsample-1e6.tagAlign.gz 2000000 255 0.0676862151351245 105 0.03403733 1500 0.03316297 2.041018 39.48408 2 GM2610-H3K36ME3_subsample-1e6.tagAlign.gz 2000000 255 0.0677786132587137 100 0.03389437 1500 0.03291708 2.059071 35.67163 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM2610-H3K36ME3_subsample-2.5e6.cc.plot.pdf

./GM2610-H3K36ME3_subsample-2.5e6.cc.plot.pdf

./GM2610-H3K36ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM2610-H3K36ME3_subsample-2.5e6.tagAlign.gz 5000000 255 0.112636310568465 105 0.08024563 1500 0.07834014 1.437785 17.99866 2 GM2610-H3K36ME3_subsample-2.5e6.tagAlign.gz 5000000 245 0.112725773064036 105 0.08038473 1500 0.07851311 1.435757 18.27971 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM2610-H3K36ME3_subsample-20e6.cc.plot.pdf

./GM2610-H3K36ME3_subsample-20e6.cc.plot.pdf

./GM2610-H3K36ME3_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM2610-H3K36ME3_subsample-20e6.tagAlign.gz 40000000 250 0.427632312551374 105 0.4037374 1500 0.395282 1.081841 3.825982 2 GM2610-H3K36ME3_subsample-20e6.tagAlign.gz 40000000 250 0.427694942551926 105 0.4038889 1500 0.3954047 1.081664 3.805926 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM2610-H3K36ME3_subsample-5e6.cc.plot.pdf

./GM2610-H3K36ME3_subsample-5e6.cc.plot.pdf

./GM2610-H3K36ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM2610-H3K36ME3_subsample-5e6.tagAlign.gz 10000000 255 0.178642584599238 105 0.1478692 1500 0.1446163 1.235286 10.46026 2 GM2610-H3K36ME3_subsample-5e6.tagAlign.gz 10000000 250 0.178609854131721 105 0.1478661 1500 0.1444775 1.236247 10.0726 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM2610-H3K36ME3_subsample-7.5e6.cc.plot.pdf

./GM2610-H3K36ME3_subsample-7.5e6.cc.plot.pdf

./GM2610-H3K36ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM2610-H3K36ME3_subsample-7.5e6.tagAlign.gz 15000000 250 0.235019169365764 105 0.2058193 1500 0.2013524 1.167203 7.536911 2 GM2610-H3K36ME3_subsample-7.5e6.tagAlign.gz 15000000 250 0.234928828978743 105 0.2058922 1500 0.2012352 1.167434 7.235036 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM2610-H3K4ME1_merged.cc.plot.pdf

./GM2610-H3K4ME1_merged.cc.plot.pdf

./GM2610-H3K4ME1_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM2610-H3K4ME1_merged.tagAlign.gz 112664362 285 0.674302721738864 105 0.6380702 1500 0.5832351 1.156142 1.660753 2 GM2610-H3K4ME1_merged.tagAlign.gz 112664362 285 0.674302721738864 105 0.6380702 1500 0.5832351 1.156142 1.660753 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM2610-H3K4ME1_subsample-0.1e6.cc.plot.pdf

./GM2610-H3K4ME1_subsample-0.1e6.cc.plot.pdf

./GM2610-H3K4ME1_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM2610-H3K4ME1_subsample-0.1e6.tagAlign.gz 200000 250 0.0343696884640844 100 0.003787492 1500 0.003336296 10.30175 68.78031 2 GM2610-H3K4ME1_subsample-0.1e6.tagAlign.gz 200000 255 0.034472893199121 105 0.004061028 1500 0.003338837 10.32482 43.11055 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM2610-H3K4ME1_subsample-0.25e6.cc.plot.pdf

./GM2610-H3K4ME1_subsample-0.25e6.cc.plot.pdf

./GM2610-H3K4ME1_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM2610-H3K4ME1_subsample-0.25e6.tagAlign.gz 500000 230 0.0396702176519495 100 0.00947264 1500 0.008482716 4.676594 31.50495 2 GM2610-H3K4ME1_subsample-0.25e6.tagAlign.gz 500000 260 0.0397554939452671 105 0.009553016 1500 0.008554741 4.647188 31.25469 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM2610-H3K4ME1_subsample-0.5e6.cc.plot.pdf

./GM2610-H3K4ME1_subsample-0.5e6.cc.plot.pdf

./GM2610-H3K4ME1_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM2610-H3K4ME1_subsample-0.5e6.tagAlign.gz 1000000 230 0.0490247644722313 95 0.01848805 1500 0.01680225 2.91775 19.1141 2 GM2610-H3K4ME1_subsample-0.5e6.tagAlign.gz 1000000 255 0.0489137330516282 100 0.01861861 1500 0.01686183 2.900856 18.24462 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM2610-H3K4ME1_subsample-10e6.cc.plot.pdf

./GM2610-H3K4ME1_subsample-10e6.cc.plot.pdf

./GM2610-H3K4ME1_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM2610-H3K4ME1_subsample-10e6.tagAlign.gz 20000000 260 0.298130029020514 105 0.2660466 1500 0.2429731 1.227008 2.390489 2 GM2610-H3K4ME1_subsample-10e6.tagAlign.gz 20000000 255 0.297938072454463 105 0.26599 1500 0.2427141 1.227527 2.372583 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM2610-H3K4ME1_subsample-1e6.cc.plot.pdf

./GM2610-H3K4ME1_subsample-1e6.cc.plot.pdf

./GM2610-H3K4ME1_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM2610-H3K4ME1_subsample-1e6.tagAlign.gz 2000000 255 0.0664857400748661 105 0.03632833 1500 0.03316094 2.004942 10.52119 2 GM2610-H3K4ME1_subsample-1e6.tagAlign.gz 2000000 250 0.0670631853667786 105 0.03609175 1500 0.03289133 2.038932 10.67731 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM2610-H3K4ME1_subsample-2.5e6.cc.plot.pdf

./GM2610-H3K4ME1_subsample-2.5e6.cc.plot.pdf

./GM2610-H3K4ME1_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM2610-H3K4ME1_subsample-2.5e6.tagAlign.gz 5000000 250 0.116044214695293 105 0.08547926 1500 0.0778333 1.490933 4.99753 2 GM2610-H3K4ME1_subsample-2.5e6.tagAlign.gz 5000000 260 0.116142363865629 105 0.08549188 1500 0.07787921 1.491314 5.026245 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM2610-H3K4ME1_subsample-20e6.cc.plot.pdf

./GM2610-H3K4ME1_subsample-20e6.cc.plot.pdf

./GM2610-H3K4ME1_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM2610-H3K4ME1_subsample-20e6.tagAlign.gz 40000000 280 0.445070354524353 105 0.4115395 1500 0.3759685 1.183797 1.942645 2 GM2610-H3K4ME1_subsample-20e6.tagAlign.gz 40000000 280 0.444986419803001 105 0.411444 1500 0.3761311 1.183062 1.949863 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM2610-H3K4ME1_subsample-5e6.cc.plot.pdf

./GM2610-H3K4ME1_subsample-5e6.cc.plot.pdf

./GM2610-H3K4ME1_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM2610-H3K4ME1_subsample-5e6.tagAlign.gz 10000000 250 0.186992225435626 105 0.1558971 1500 0.142234 1.31468 3.275834 2 GM2610-H3K4ME1_subsample-5e6.tagAlign.gz 10000000 255 0.187126116077985 105 0.155912 1500 0.1422656 1.31533 3.287339 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM2610-H3K4ME1_subsample-7.5e6.cc.plot.pdf

./GM2610-H3K4ME1_subsample-7.5e6.cc.plot.pdf

./GM2610-H3K4ME1_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM2610-H3K4ME1_subsample-7.5e6.tagAlign.gz 15000000 260 0.246924785445816 105 0.2152987 1500 0.196613 1.255893 2.692525 2 GM2610-H3K4ME1_subsample-7.5e6.tagAlign.gz 15000000 265 0.246890527962528 105 0.2153682 1500 0.1965435 1.256162 2.674522 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM2610-H3K4ME3_merged.cc.plot.pdf

./GM2610-H3K4ME3_merged.cc.plot.pdf

./GM2610-H3K4ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM2610-H3K4ME3_merged.tagAlign.gz 127415954 270 0.778666102351196 105 0.71049 1500 0.4599873 1.692799 1.272157 1 GM2610-H3K4ME3_merged.tagAlign.gz 127415954 270 0.778666102351196 105 0.71049 1500 0.4599873 1.692799 1.272157 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM2610-H3K4ME3_subsample-0.1e6.cc.plot.pdf

./GM2610-H3K4ME3_subsample-0.1e6.cc.plot.pdf

./GM2610-H3K4ME3_subsample-0.1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM2610-H3K4ME3_subsample-0.1e6.tagAlign.gz 200000 245 0.0462232698294466 100 0.01044005 1500 0.006453424 7.162596 9.975813 2 GM2610-H3K4ME3_subsample-0.1e6.tagAlign.gz 200000 240 0.0468918037761074 100 0.01056237 1500 0.006615138 7.08856 10.20377 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM2610-H3K4ME3_subsample-0.25e6.cc.plot.pdf

./GM2610-H3K4ME3_subsample-0.25e6.cc.plot.pdf

./GM2610-H3K4ME3_subsample-0.25e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM2610-H3K4ME3_subsample-0.25e6.tagAlign.gz 500000 230 0.0619576697673924 105 0.02516104 1500 0.01531382 4.045865 4.736752 2 GM2610-H3K4ME3_subsample-0.25e6.tagAlign.gz 500000 250 0.0618989943825631 100 0.02533641 1500 0.01528683 4.049171 4.638222 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM2610-H3K4ME3_subsample-0.5e6.cc.plot.pdf

./GM2610-H3K4ME3_subsample-0.5e6.cc.plot.pdf

./GM2610-H3K4ME3_subsample-0.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM2610-H3K4ME3_subsample-0.5e6.tagAlign.gz 1000000 255 0.088463302678974 105 0.04900673 1500 0.02964716 2.983871 3.038092 2 GM2610-H3K4ME3_subsample-0.5e6.tagAlign.gz 1000000 255 0.088691272676059 100 0.04895375 1500 0.03015355 2.941321 3.113676 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM2610-H3K4ME3_subsample-10e6.cc.plot.pdf

./GM2610-H3K4ME3_subsample-10e6.cc.plot.pdf

./GM2610-H3K4ME3_subsample-10e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM2610-H3K4ME3_subsample-10e6.tagAlign.gz 20000000 260 0.526983655378523 105 0.4457697 1500 0.272753 1.932091 1.4694 1 GM2610-H3K4ME3_subsample-10e6.tagAlign.gz 20000000 260 0.527443106039037 105 0.4455631 1500 0.2726211 1.934711 1.473453 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM2610-H3K4ME3_subsample-1e6.cc.plot.pdf

./GM2610-H3K4ME3_subsample-1e6.cc.plot.pdf

./GM2610-H3K4ME3_subsample-1e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM2610-H3K4ME3_subsample-1e6.tagAlign.gz 2000000 250 0.135537071196388 105 0.09098489 1500 0.05588315 2.425365 2.26923 2 GM2610-H3K4ME3_subsample-1e6.tagAlign.gz 2000000 250 0.135730316638818 105 0.09169774 1500 0.05609255 2.419757 2.23669 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM2610-H3K4ME3_subsample-2.5e6.cc.plot.pdf

./GM2610-H3K4ME3_subsample-2.5e6.cc.plot.pdf

./GM2610-H3K4ME3_subsample-2.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM2610-H3K4ME3_subsample-2.5e6.tagAlign.gz 5000000 255 0.249029361822382 105 0.1941087 1500 0.1189632 2.093331 1.730858 2 GM2610-H3K4ME3_subsample-2.5e6.tagAlign.gz 5000000 260 0.249484201173123 105 0.1942224 1500 0.118813 2.099806 1.732824 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM2610-H3K4ME3_subsample-20e6.cc.plot.pdf

./GM2610-H3K4ME3_subsample-20e6.cc.plot.pdf

./GM2610-H3K4ME3_subsample-20e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM2610-H3K4ME3_subsample-20e6.tagAlign.gz 40000000 265 0.662689659270883 105 0.5718118 1500 0.3506559 1.889857 1.410922 1 GM2610-H3K4ME3_subsample-20e6.tagAlign.gz 40000000 265 0.662904842786043 105 0.5718997 1500 0.3506789 1.890347 1.411377 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM2610-H3K4ME3_subsample-5e6.cc.plot.pdf

./GM2610-H3K4ME3_subsample-5e6.cc.plot.pdf

./GM2610-H3K4ME3_subsample-5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM2610-H3K4ME3_subsample-5e6.tagAlign.gz 10000000 265 0.378634730548951 105 0.3114098 1500 0.1906742 1.985768 1.556795 2 GM2610-H3K4ME3_subsample-5e6.tagAlign.gz 10000000 265 0.378444633148672 105 0.3108335 1500 0.1904217 1.987403 1.5615 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./GM2610-H3K4ME3_subsample-7.5e6.cc.plot.pdf

./GM2610-H3K4ME3_subsample-7.5e6.cc.plot.pdf

./GM2610-H3K4ME3_subsample-7.5e6.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
GM2610-H3K4ME3_subsample-7.5e6.tagAlign.gz 15000000 265 0.46505381609183 105 0.3891135 1500 0.2381518 1.952762 1.503043 2 GM2610-H3K4ME3_subsample-7.5e6.tagAlign.gz 15000000 265 0.464975233340562 105 0.3896276 1500 0.2379348 1.954213 1.496712 1
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./ULI-H3K27ME3_merged.cc.plot.pdf

./ULI-H3K27ME3_merged.cc.plot.pdf

./ULI-H3K27ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
ULI-H3K27ME3_merged.tagAlign.gz 30783516 130 0.406201080684826 105 0.3349602 1500 0.3234678 1.25577 7.198974 2 ULI-H3K27ME3_merged.tagAlign.gz 30783516 130 0.406201080684826 105 0.3349602 1500 0.3234678 1.25577 7.198974 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./ULI-H3K27ME3_subsample-1e3.cc.plot.pdf

./ULI-H3K27ME3_subsample-1e3.cc.plot.pdf

./ULI-H3K27ME3_subsample-1e3.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
ULI-H3K27ME3_subsample-1e3.tagAlign.gz 22820666 150 0.353151641975355 105 0.271018 1500 0.2612265 1.351898 9.388228 2 ULI-H3K27ME3_subsample-1e3.tagAlign.gz 22820666 150 0.353151641975355 ULI-H3K27ME3_subsample-1e3.tagAlign.gz105 0.271018 228206661500 1500.2612265 0.3531516419753551.351898 9.388228105 20.271018 1500 0.2612265 1.351898 9.388228 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./ULI-H3K4ME3_merged.cc.plot.pdf

./ULI-H3K4ME3_merged.cc.plot.pdf

./ULI-H3K4ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
ULI-H3K4ME3_merged.tagAlign.gz 16581384 165 0.280363852520771 105 0.234882 1500 0.2083331 1.345748 2.713134 2 ULI-H3K4ME3_merged.tagAlign.gz 16581384 165 0.280363852520771 105 0.234882 1500 0.2083331 1.345748 2.713134 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./ULI-H3K4ME3_subsample-1e3.cc.plot.pdf

./ULI-H3K4ME3_subsample-1e3.cc.plot.pdf

./ULI-H3K4ME3_subsample-1e3.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
ULI-H3K4ME3_subsample-1e3.tagAlign.gz 2458200 145 0.115496679440781 105 0.06002989 1500 0.03835018 3.011633 3.558466 2 ULI-H3K4ME3_subsample-1e3.tagAlign.gz 2458200 145 0.115496679440781 105 0.06002989 1500 0.03835018 3.011633 3.558466 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./ULI-H3K9ME3_merged.cc.plot.pdf

./ULI-H3K9ME3_merged.cc.plot.pdf

./ULI-H3K9ME3_merged.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
ULI-H3K9ME3_merged.tagAlign.gz 73220894 125 0.579677807534924 105 0.5405314 1500 0.5071592 1.14299 2.173027 2 ULI-H3K9ME3_merged.tagAlign.gz 73208842 125 0.579618528838595 105 0.5404662 1500 0.5070928 1.143023 2.17316 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./ULI-H3K9ME3_subsample-1e3.cc.plot.pdf

./ULI-H3K9ME3_subsample-1e3.cc.plot.pdf

./ULI-H3K9ME3_subsample-1e3.cc.qc

Filename	numReads	estFragLen	corr_estFragLen	PhantomPeak	corr_phantomPeak	argmin_corr	min_corr	phantomPeakCoef	relPhantomPeakCoef	QualityTag
ULI-H3K9ME3_subsample-1e3.tagAlign.gz 26476558 150 0.359005435652678 105 0.3002715 1500 0.2903026 1.236659 6.891726 2 ULI-H3K9ME3_subsample-1e3.tagAlign.gz 26476558 150 0.359005435652678 105 0.3002715 1500 0.2903026 1.236659 6.891726 2
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile 
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display

./cmd_line_parameters.20151215_222231.txt

-out_dir /srv/scratch/pangwei/deepimpute/data/peaks -num_rep 1 -tag1 /srv/scratch/pangwei/deepimpute/data/merged/ULI-H3K27ME3_merged.tagAlign.gz -peakcall macs2 -species hg19

./cmd_line_parameters.20151215_222709.txt

-out_dir /srv/scratch/pangwei/deepimpute/data/bigWigs/ULI-H3K9ME3_merged -input tag -final_stage xcor -num_rep 1 -tag1 /srv/scratch/pangwei/deepimpute/data/merged/ULI-H3K9ME3_merged.tagAlign.gz -sigtrk aln2rawsig -make_bw -species hg19

./cmd_line_parameters.20151215_222754.txt

-out_dir /srv/scratch/pangwei/deepimpute/data/bigWigs/ULI-H3K9ME3_merged -input tag -final_stage xcor -num_rep 1 -tag1 /srv/scratch/pangwei/deepimpute/data/merged/ULI-H3K9ME3_merged.tagAlign.gz -sigtrk aln2rawsig -make_bw -species hg19

./cmd_line_parameters.20151215_225948.txt

-out_dir /srv/scratch/pangwei/deepimpute/data/bigWigs/ULI-H3K9ME3_merged -input tag -final_stage xcor -num_rep 1 -tag1 /srv/scratch/pangwei/deepimpute/data/merged/ULI-H3K9ME3_merged.tagAlign.gz -sigtrk aln2rawsig -make_bw -species hg19 -umap /mnt/data/ENCODE/umap/encodeHg19Male/globalmap_k20tok54