ID	chrom	start	end	num.mark	seg.median.logR	copy.number	call	subclone.status
NaomicfDNA5_S1_R1.dedup.filt.bam.1Mb	1	1000001	120000000	119	-0.0232504732789665	2	NEUT	0
NaomicfDNA5_S1_R1.dedup.filt.bam.1Mb	1	150000001	248000000	98	0.752766533044962	4	AMP	0
NaomicfDNA5_S1_R1.dedup.filt.bam.1Mb	2	1000001	243000000	242	-0.0244810921488448	2	NEUT	0
NaomicfDNA5_S1_R1.dedup.filt.bam.1Mb	3	1000001	197000000	196	-0.0340043221137529	2	NEUT	0
NaomicfDNA5_S1_R1.dedup.filt.bam.1Mb	4	2000001	191000000	189	-0.03343157218252	2	NEUT	0
NaomicfDNA5_S1_R1.dedup.filt.bam.1Mb	5	1000001	26000000	25	0.251008739384107	3	GAIN	1
NaomicfDNA5_S1_R1.dedup.filt.bam.1Mb	5	26000001	34000000	8	0.503630411823928	3	GAIN	0
NaomicfDNA5_S1_R1.dedup.filt.bam.1Mb	5	35000001	53000000	18	0.766629389692864	4	AMP	0
NaomicfDNA5_S1_R1.dedup.filt.bam.1Mb	5	53000001	180000000	127	-0.027129880243917	2	NEUT	0
NaomicfDNA5_S1_R1.dedup.filt.bam.1Mb	6	1000001	170000000	169	-0.0238448636358128	2	NEUT	0
NaomicfDNA5_S1_R1.dedup.filt.bam.1Mb	7	1000001	56000000	55	-0.0376341428366295	2	NEUT	0
NaomicfDNA5_S1_R1.dedup.filt.bam.1Mb	7	67000001	125000000	58	-0.276222720613724	1	HETD	1
NaomicfDNA5_S1_R1.dedup.filt.bam.1Mb	7	125000001	159000000	34	-0.0750388971617577	2	NEUT	0
NaomicfDNA5_S1_R1.dedup.filt.bam.1Mb	8	1000001	43000000	42	-0.0804576597353367	2	NEUT	0
NaomicfDNA5_S1_R1.dedup.filt.bam.1Mb	8	47000001	69000000	22	0.441378120809569	3	GAIN	0
NaomicfDNA5_S1_R1.dedup.filt.bam.1Mb	8	69000001	145000000	76	1.03729629170412	5	HLAMP	0
NaomicfDNA5_S1_R1.dedup.filt.bam.1Mb	9	1000001	32000000	31	-0.926120769158179	1	HETD	0
NaomicfDNA5_S1_R1.dedup.filt.bam.1Mb	9	32000001	141000000	109	0.222505413461264	3	GAIN	1
NaomicfDNA5_S1_R1.dedup.filt.bam.1Mb	10	1000001	135000000	134	-0.0722068867964926	2	NEUT	0
NaomicfDNA5_S1_R1.dedup.filt.bam.1Mb	11	2000001	134000000	132	-0.0117478657179589	2	NEUT	0
NaomicfDNA5_S1_R1.dedup.filt.bam.1Mb	12	1000001	34000000	33	-0.721194594770147	1	HETD	0
NaomicfDNA5_S1_R1.dedup.filt.bam.1Mb	12	38000001	132000000	94	0.21978881869927	3	GAIN	1
NaomicfDNA5_S1_R1.dedup.filt.bam.1Mb	13	20000001	55000000	35	-0.0698105703335761	2	NEUT	0
NaomicfDNA5_S1_R1.dedup.filt.bam.1Mb	13	55000001	114000000	59	0.416654655893855	3	GAIN	0
NaomicfDNA5_S1_R1.dedup.filt.bam.1Mb	14	21000001	106000000	85	0.35698767439277	3	GAIN	0
NaomicfDNA5_S1_R1.dedup.filt.bam.1Mb	15	25000001	102000000	77	-0.0515749050167395	2	NEUT	0
NaomicfDNA5_S1_R1.dedup.filt.bam.1Mb	16	1000001	90000000	89	-0.072254495732842	2	NEUT	0
NaomicfDNA5_S1_R1.dedup.filt.bam.1Mb	17	1000001	81000000	80	-0.0511594088449636	2	NEUT	0
NaomicfDNA5_S1_R1.dedup.filt.bam.1Mb	18	1000001	26000000	25	0.378450648516075	3	GAIN	0
NaomicfDNA5_S1_R1.dedup.filt.bam.1Mb	18	26000001	78000000	52	-0.733187718645057	1	HETD	0
NaomicfDNA5_S1_R1.dedup.filt.bam.1Mb	19	1000001	6000000	5	0.172084664477236	3	GAIN	1
NaomicfDNA5_S1_R1.dedup.filt.bam.1Mb	19	6000001	59000000	53	0.348455575920952	3	GAIN	0
NaomicfDNA5_S1_R1.dedup.filt.bam.1Mb	20	1000001	19000000	18	-0.0195773717048633	2	NEUT	0
NaomicfDNA5_S1_R1.dedup.filt.bam.1Mb	20	19000001	61000000	42	0.432296355527174	3	GAIN	0
NaomicfDNA5_S1_R1.dedup.filt.bam.1Mb	21	16000001	48000000	32	-0.123693787415738	2	NEUT	0
NaomicfDNA5_S1_R1.dedup.filt.bam.1Mb	22	22000001	50000000	28	-0.101040589883699	2	NEUT	0
NaomicfDNA5_S1_R1.dedup.filt.bam.1Mb	X	4000001	43000000	39	-0.200896727138829	1	HETD	1
NaomicfDNA5_S1_R1.dedup.filt.bam.1Mb	X	43000001	55000000	12	0.308797331941955	3	GAIN	1
NaomicfDNA5_S1_R1.dedup.filt.bam.1Mb	X	57000001	79000000	22	-0.0847742032976764	2	NEUT	0
NaomicfDNA5_S1_R1.dedup.filt.bam.1Mb	X	79000001	151000000	72	0.403661744355609	3	GAIN	0