Set reverse_read_strand to 'False' for 'ENCFF001RDX-ENCFF001RDR_rampage_star_marked.bam' Set reverse_read_strand to 'True' for 'ENCFF001RFD-ENCFF001RFC_star_genome.bam' Set reverse_read_strand to 'False' for 'ENCFF001RET-ENCFF001RES_rampage_star_marked.bam' Set reverse_read_strand to 'True' for 'ENCFF001RFF-ENCFF001RFE_star_genome.bam'