Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 45226)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 45114)	% of Background Sequences with Motif
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-53	-1.235e+02	0.0000	1298.0	2.87%	631.6	1.40%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-52	-1.218e+02	0.0000	1111.0	2.46%	505.1	1.12%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-50	-1.171e+02	0.0000	1223.0	2.70%	593.5	1.31%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-46	-1.081e+02	0.0000	1381.0	3.05%	729.8	1.61%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-43	-1.012e+02	0.0000	1303.0	2.88%	690.4	1.53%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-43	-9.943e+01	0.0000	1459.0	3.22%	811.3	1.79%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-42	-9.741e+01	0.0000	790.0	1.75%	338.1	0.75%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-40	-9.355e+01	0.0000	656.0	1.45%	258.9	0.57%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-37	-8.724e+01	0.0000	1045.0	2.31%	538.9	1.19%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-37	-8.647e+01	0.0000	1138.0	2.52%	608.1	1.34%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-37	-8.626e+01	0.0000	817.0	1.81%	379.3	0.84%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-35	-8.200e+01	0.0000	738.0	1.63%	334.6	0.74%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-34	-8.049e+01	0.0000	790.0	1.75%	373.3	0.83%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-31	-7.285e+01	0.0000	421.0	0.93%	146.1	0.32%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-31	-7.271e+01	0.0000	853.0	1.89%	436.8	0.97%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-31	-7.266e+01	0.0000	671.0	1.48%	308.1	0.68%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-29	-6.862e+01	0.0000	1408.0	3.11%	871.1	1.93%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-26	-6.018e+01	0.0000	459.0	1.01%	191.9	0.42%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-26	-5.995e+01	0.0000	982.0	2.17%	568.2	1.26%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-25	-5.958e+01	0.0000	743.0	1.64%	390.1	0.86%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-25	-5.813e+01	0.0000	735.0	1.62%	389.0	0.86%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-24	-5.665e+01	0.0000	398.0	0.88%	158.4	0.35%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-24	-5.639e+01	0.0000	372.0	0.82%	142.7	0.32%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-24	-5.633e+01	0.0000	742.0	1.64%	398.4	0.88%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-23	-5.483e+01	0.0000	463.0	1.02%	204.7	0.45%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-23	-5.463e+01	0.0000	290.0	0.64%	95.5	0.21%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e-22	-5.224e+01	0.0000	253.0	0.56%	77.8	0.17%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-22	-5.201e+01	0.0000	368.0	0.81%	147.7	0.33%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-22	-5.151e+01	0.0000	343.0	0.76%	132.8	0.29%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-21	-4.990e+01	0.0000	1023.0	2.26%	634.6	1.40%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-21	-4.848e+01	0.0000	375.0	0.83%	158.0	0.35%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-20	-4.749e+01	0.0000	728.0	1.61%	413.1	0.91%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-19	-4.566e+01	0.0000	1263.0	2.79%	845.0	1.87%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-18	-4.372e+01	0.0000	349.0	0.77%	150.6	0.33%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-18	-4.317e+01	0.0000	598.0	1.32%	328.1	0.73%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-18	-4.262e+01	0.0000	520.0	1.15%	272.3	0.60%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e-18	-4.244e+01	0.0000	216.0	0.48%	69.7	0.15%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-15	-3.672e+01	0.0000	2481.0	5.48%	1948.7	4.31%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-15	-3.626e+01	0.0000	615.0	1.36%	362.6	0.80%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-14	-3.395e+01	0.0000	103.0	0.23%	19.3	0.04%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e-14	-3.347e+01	0.0000	184.0	0.41%	63.0	0.14%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-14	-3.296e+01	0.0000	254.0	0.56%	108.4	0.24%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-13	-3.172e+01	0.0000	540.0	1.19%	319.0	0.71%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-13	-3.166e+01	0.0000	333.0	0.74%	165.4	0.37%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e-13	-3.143e+01	0.0000	245.0	0.54%	105.9	0.23%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-11	-2.630e+01	0.0000	680.0	1.50%	451.5	1.00%
Oct6(POU,Homeobox)/NPC-Oct6-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e-11	-2.626e+01	0.0000	254.0	0.56%	122.3	0.27%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-11	-2.596e+01	0.0000	484.0	1.07%	295.3	0.65%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-10	-2.505e+01	0.0000	121.0	0.27%	38.3	0.08%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-10	-2.476e+01	0.0000	1042.0	2.30%	763.1	1.69%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-10	-2.420e+01	0.0000	119.0	0.26%	38.2	0.08%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-10	-2.374e+01	0.0000	102.0	0.23%	29.5	0.07%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-9	-2.264e+01	0.0000	1900.0	4.20%	1537.9	3.40%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-9	-2.188e+01	0.0000	445.0	0.98%	279.9	0.62%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-8	-2.046e+01	0.0000	123.0	0.27%	46.8	0.10%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e-7	-1.823e+01	0.0000	1671.0	3.69%	1368.6	3.03%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-7	-1.808e+01	0.0000	212.0	0.47%	112.3	0.25%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-7	-1.790e+01	0.0000	305.0	0.67%	183.7	0.41%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-7	-1.770e+01	0.0000	190.0	0.42%	97.4	0.22%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-7	-1.758e+01	0.0000	221.0	0.49%	120.5	0.27%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-6	-1.573e+01	0.0000	1207.0	2.67%	970.5	2.14%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-6	-1.539e+01	0.0000	74.0	0.16%	24.1	0.05%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-6	-1.531e+01	0.0000	584.0	1.29%	424.3	0.94%
Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer	GGGAAAAMCCCG	1e-6	-1.501e+01	0.0000	215.0	0.48%	123.8	0.27%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-6	-1.480e+01	0.0000	193.0	0.43%	107.0	0.24%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-6	-1.424e+01	0.0000	2195.0	4.85%	1892.6	4.18%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-5	-1.367e+01	0.0000	625.0	1.38%	469.7	1.04%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-5	-1.315e+01	0.0000	238.0	0.53%	147.3	0.33%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-5	-1.304e+01	0.0000	556.0	1.23%	413.7	0.91%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e-5	-1.258e+01	0.0000	92.0	0.20%	40.7	0.09%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e-5	-1.208e+01	0.0000	313.0	0.69%	212.9	0.47%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-5	-1.196e+01	0.0000	240.0	0.53%	153.8	0.34%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-5	-1.165e+01	0.0000	470.0	1.04%	347.9	0.77%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-4	-1.136e+01	0.0001	652.0	1.44%	508.4	1.12%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-4	-1.098e+01	0.0001	800.0	1.77%	643.7	1.42%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-4	-1.042e+01	0.0002	225.0	0.50%	147.6	0.33%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-4	-9.829e+00	0.0003	395.0	0.87%	293.7	0.65%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-4	-9.755e+00	0.0003	197.0	0.44%	127.2	0.28%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-3	-9.129e+00	0.0005	714.0	1.58%	581.2	1.28%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-3	-8.478e+00	0.0010	210.0	0.46%	143.9	0.32%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-3	-8.151e+00	0.0014	416.0	0.92%	322.5	0.71%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e-3	-7.800e+00	0.0019	27.0	0.06%	7.3	0.02%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-3	-7.696e+00	0.0021	798.0	1.76%	671.5	1.48%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-3	-7.475e+00	0.0026	635.0	1.40%	524.0	1.16%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-3	-7.451e+00	0.0026	59.0	0.13%	28.2	0.06%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-3	-7.254e+00	0.0032	64.0	0.14%	32.8	0.07%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-3	-7.036e+00	0.0039	3319.0	7.34%	3078.0	6.80%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-3	-6.982e+00	0.0041	439.0	0.97%	351.4	0.78%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-2	-6.856e+00	0.0046	510.0	1.13%	416.1	0.92%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-2	-6.444e+00	0.0068	671.0	1.48%	567.6	1.25%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-2	-6.340e+00	0.0075	47.0	0.10%	22.3	0.05%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-2	-6.179e+00	0.0087	59.0	0.13%	31.3	0.07%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-2	-5.794e+00	0.0127	298.0	0.66%	234.6	0.52%
SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer	WNBCACGTGA	1e-2	-5.792e+00	0.0127	876.0	1.94%	765.2	1.69%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-2	-5.711e+00	0.0135	168.0	0.37%	121.2	0.27%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e-2	-5.707e+00	0.0135	175.0	0.39%	127.3	0.28%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-2	-5.631e+00	0.0143	65.0	0.14%	37.3	0.08%
SeqBias: C/A-bias	MMMMMMMMMM	1e-2	-5.351e+00	0.0187	28991.0	64.08%	28616.0	63.25%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-2	-5.092e+00	0.0240	300.0	0.66%	241.6	0.53%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-2	-4.826e+00	0.0310	271.0	0.60%	217.8	0.48%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-2	-4.770e+00	0.0325	95.0	0.21%	64.4	0.14%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-2	-4.768e+00	0.0325	985.0	2.18%	882.3	1.95%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-2	-4.759e+00	0.0325	59.0	0.13%	35.5	0.08%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-1	-4.593e+00	0.0377	48.0	0.11%	27.8	0.06%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-1	-4.227e+00	0.0538	85.0	0.19%	58.2	0.13%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-1	-4.043e+00	0.0641	412.0	0.91%	353.5	0.78%
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1e-1	-4.018e+00	0.0650	781.0	1.73%	700.8	1.55%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-1	-4.014e+00	0.0650	1033.0	2.28%	940.0	2.08%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-1	-3.956e+00	0.0679	357.0	0.79%	303.5	0.67%
Tal1	CATCTG	1e-1	-3.955e+00	0.0679	820.0	1.81%	738.6	1.63%
HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer	RACAGCTGTTBH	1e-1	-3.941e+00	0.0679	359.0	0.79%	305.4	0.67%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-1	-3.770e+00	0.0796	571.0	1.26%	505.3	1.12%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-1	-3.680e+00	0.0864	328.0	0.72%	279.5	0.62%
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1e-1	-3.598e+00	0.0929	175.0	0.39%	140.6	0.31%
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1e-1	-3.582e+00	0.0936	114.0	0.25%	87.0	0.19%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-1	-3.580e+00	0.0936	821.0	1.81%	745.5	1.65%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-1	-3.501e+00	0.0997	2206.0	4.88%	2085.7	4.61%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e-1	-3.284e+00	0.1230	112.0	0.25%	86.4	0.19%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e-1	-3.259e+00	0.1249	239.0	0.53%	201.6	0.45%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-1	-3.214e+00	0.1296	357.0	0.79%	311.6	0.69%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-1	-3.181e+00	0.1328	500.0	1.11%	446.7	0.99%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-1	-3.144e+00	0.1367	240.0	0.53%	203.3	0.45%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-1	-3.041e+00	0.1504	126.0	0.28%	100.9	0.22%
PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer	NNBCACGTGN	1e-1	-3.020e+00	0.1523	921.0	2.04%	851.6	1.88%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-1	-2.921e+00	0.1668	556.0	1.23%	503.3	1.11%
Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer	CCCACGTGCT	1e-1	-2.890e+00	0.1707	322.0	0.71%	282.8	0.63%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e-1	-2.838e+00	0.1785	54.0	0.12%	38.5	0.09%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e-1	-2.797e+00	0.1844	18.0	0.04%	9.6	0.02%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-1	-2.788e+00	0.1846	558.0	1.23%	507.4	1.12%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-1	-2.778e+00	0.1850	380.0	0.84%	338.4	0.75%
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1e-1	-2.762e+00	0.1866	2165.0	4.79%	2067.7	4.57%
SeqBias: GA-repeat	GAGAGAGAGA	1e-1	-2.689e+00	0.1992	5543.0	12.25%	5396.6	11.93%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-1	-2.588e+00	0.2188	118.0	0.26%	96.3	0.21%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-1	-2.559e+00	0.2235	1036.0	2.29%	972.3	2.15%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e-1	-2.550e+00	0.2238	307.0	0.68%	272.6	0.60%
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1e-1	-2.527e+00	0.2274	214.0	0.47%	185.6	0.41%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-1	-2.522e+00	0.2274	102.0	0.23%	83.0	0.18%
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1e-1	-2.458e+00	0.2402	409.0	0.90%	370.8	0.82%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-1	-2.414e+00	0.2491	146.0	0.32%	123.7	0.27%
SeqBias: GCW-triplet	GCWGCWGCWGCW	1e-1	-2.353e+00	0.2630	32539.0	71.92%	32362.4	71.53%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-1	-2.319e+00	0.2700	1383.0	3.06%	1316.7	2.91%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-2.271e+00	0.2814	44.0	0.10%	32.7	0.07%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-2.264e+00	0.2814	112.0	0.25%	93.2	0.21%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-2.218e+00	0.2926	93.0	0.21%	76.3	0.17%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-2.189e+00	0.2989	47.0	0.10%	35.4	0.08%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-2.183e+00	0.2989	391.0	0.86%	357.6	0.79%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-2.179e+00	0.2989	793.0	1.75%	745.3	1.65%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-2.102e+00	0.3197	1133.0	2.50%	1078.7	2.38%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-2.101e+00	0.3197	590.0	1.30%	550.4	1.22%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-2.097e+00	0.3197	505.0	1.12%	468.9	1.04%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-2.089e+00	0.3197	17.0	0.04%	10.1	0.02%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-2.081e+00	0.3197	2091.0	4.62%	2018.6	4.46%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-2.080e+00	0.3197	3.0	0.01%	0.6	0.00%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-2.063e+00	0.3197	62.0	0.14%	49.0	0.11%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-2.050e+00	0.3213	446.0	0.99%	412.5	0.91%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-2.014e+00	0.3309	9.0	0.02%	4.9	0.01%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-1.947e+00	0.3517	121.0	0.27%	104.0	0.23%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-1.912e+00	0.3619	727.0	1.61%	687.7	1.52%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-1.849e+00	0.3832	66.0	0.15%	54.7	0.12%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-1.835e+00	0.3862	56.0	0.12%	45.2	0.10%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-1.834e+00	0.3862	444.0	0.98%	414.1	0.92%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-1.806e+00	0.3927	58.0	0.13%	47.5	0.10%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-1.795e+00	0.3944	247.0	0.55%	225.9	0.50%
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1e0	-1.786e+00	0.3956	39.0	0.09%	30.7	0.07%
RBFox2(?)/Heart-RBFox2-CLIP-Seq(GSE57926)/Homer	TGCATGCA	1e0	-1.774e+00	0.3979	1163.0	2.57%	1117.3	2.47%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e0	-1.765e+00	0.3990	190.0	0.42%	171.5	0.38%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-1.728e+00	0.4118	91.0	0.20%	78.6	0.17%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-1.708e+00	0.4174	184.0	0.41%	166.5	0.37%
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1e0	-1.700e+00	0.4184	80.0	0.18%	68.6	0.15%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-1.693e+00	0.4189	1498.0	3.31%	1449.4	3.20%
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1e0	-1.690e+00	0.4189	11222.0	24.80%	11105.2	24.55%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-1.687e+00	0.4189	1783.0	3.94%	1730.9	3.83%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-1.684e+00	0.4189	26.0	0.06%	19.0	0.04%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-1.677e+00	0.4189	45.0	0.10%	36.0	0.08%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-1.662e+00	0.4196	197.0	0.44%	179.6	0.40%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-1.656e+00	0.4197	58.0	0.13%	48.0	0.11%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-1.646e+00	0.4215	278.0	0.61%	257.3	0.57%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-1.619e+00	0.4309	320.0	0.71%	298.0	0.66%
SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer	TWCCAWWTWTGG	1e0	-1.612e+00	0.4313	108.0	0.24%	95.5	0.21%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.597e+00	0.4328	21.0	0.05%	15.3	0.03%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.597e+00	0.4328	21.0	0.05%	15.3	0.03%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-1.572e+00	0.4413	255.0	0.56%	236.2	0.52%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-1.538e+00	0.4545	215.0	0.48%	198.1	0.44%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-1.509e+00	0.4652	286.0	0.63%	268.0	0.59%
SeqBias: CG bias	SSSSSSSSSS	1e0	-1.507e+00	0.4652	18984.0	41.96%	18871.0	41.71%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-1.497e+00	0.4654	60.0	0.13%	51.7	0.11%
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1e0	-1.474e+00	0.4739	637.0	1.41%	610.8	1.35%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-1.462e+00	0.4770	1487.0	3.29%	1447.2	3.20%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-1.453e+00	0.4790	82.0	0.18%	72.6	0.16%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-1.450e+00	0.4790	524.0	1.16%	500.8	1.11%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-1.426e+00	0.4869	11.0	0.02%	7.3	0.02%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-1.423e+00	0.4869	107.0	0.24%	96.2	0.21%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-1.413e+00	0.4879	310.0	0.69%	292.4	0.65%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-1.407e+00	0.4883	90.0	0.20%	80.5	0.18%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-1.386e+00	0.4962	1861.0	4.11%	1820.4	4.02%
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1e0	-1.383e+00	0.4962	1422.0	3.14%	1386.3	3.06%
SeqBias: CA-repeat	CACACACACA	1e0	-1.348e+00	0.5105	4572.0	10.11%	4513.2	9.98%
caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer	GGYCATAAAW	1e0	-1.333e+00	0.5156	220.0	0.49%	206.2	0.46%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-1.301e+00	0.5296	884.0	1.95%	858.1	1.90%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-1.289e+00	0.5334	772.0	1.71%	748.1	1.65%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-1.278e+00	0.5363	15.0	0.03%	11.3	0.02%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-1.273e+00	0.5363	26.0	0.06%	21.1	0.05%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-1.253e+00	0.5448	196.0	0.43%	184.8	0.41%
IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer	CACGTGCC	1e0	-1.252e+00	0.5448	1580.0	3.49%	1548.8	3.42%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-1.241e+00	0.5458	738.0	1.63%	716.7	1.58%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-1.230e+00	0.5493	1002.0	2.21%	977.9	2.16%
SeqBias: polyA-repeat	AAAAAAAAAA	1e0	-1.221e+00	0.5516	23082.0	51.02%	23001.2	50.84%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-1.191e+00	0.5656	72.0	0.16%	65.9	0.15%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-1.186e+00	0.5658	337.0	0.74%	323.3	0.71%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-1.163e+00	0.5759	3.0	0.01%	1.9	0.00%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-1.140e+00	0.5864	116.0	0.26%	108.2	0.24%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-1.101e+00	0.6068	274.0	0.61%	264.0	0.58%
SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer	CCAAAAAGGG	1e0	-1.090e+00	0.6108	486.0	1.07%	472.7	1.04%
ABF1/SacCer-Promoters/Homer	CGTRNAAARTGA	1e0	-1.089e+00	0.6108	105.0	0.23%	99.0	0.22%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-1.041e+00	0.6359	59.0	0.13%	54.9	0.12%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-1.034e+00	0.6372	61.0	0.13%	56.1	0.12%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-1.027e+00	0.6384	140.0	0.31%	133.6	0.30%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-1.023e+00	0.6384	100.0	0.22%	94.6	0.21%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-1.020e+00	0.6384	489.0	1.08%	477.7	1.06%
LHY(Myb)/Seedling-LHY-ChIP-Seq(GSE52175)/Homer	ADAAATATCT	1e0	-1.012e+00	0.6393	269.0	0.59%	260.1	0.57%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-1.007e+00	0.6398	40.0	0.09%	36.4	0.08%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-9.979e-01	0.6426	42.0	0.09%	38.4	0.08%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-9.858e-01	0.6475	45.0	0.10%	41.2	0.09%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-9.668e-01	0.6571	23.0	0.05%	20.1	0.04%
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	1e0	-9.653e-01	0.6571	51.0	0.11%	47.4	0.10%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-9.600e-01	0.6571	24.0	0.05%	21.4	0.05%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-9.600e-01	0.6571	24.0	0.05%	22.0	0.05%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-9.600e-01	0.6571	24.0	0.05%	22.0	0.05%
SeqBias: G/A bias	RRRRRRRRRR	1e0	-9.181e-01	0.6748	31407.0	69.42%	31372.6	69.34%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-8.984e-01	0.6852	10.0	0.02%	8.4	0.02%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-8.955e-01	0.6852	238.0	0.53%	232.8	0.51%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-8.811e-01	0.6912	704.0	1.56%	695.7	1.54%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-8.555e-01	0.7060	707.0	1.56%	699.2	1.55%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-8.365e-01	0.7165	289.0	0.64%	284.6	0.63%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-8.217e-01	0.7240	808.0	1.79%	802.0	1.77%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-8.215e-01	0.7240	89.0	0.20%	86.6	0.19%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-8.177e-01	0.7240	24.0	0.05%	22.5	0.05%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-8.055e-01	0.7266	29.0	0.06%	27.6	0.06%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-8.016e-01	0.7266	31.0	0.07%	29.5	0.07%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-7.963e-01	0.7272	34.0	0.08%	32.1	0.07%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-7.919e-01	0.7274	146.0	0.32%	143.2	0.32%
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	1e0	-7.839e-01	0.7303	172.0	0.38%	169.8	0.38%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-7.759e-01	0.7330	837.0	1.85%	832.5	1.84%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-7.608e-01	0.7411	304.0	0.67%	301.8	0.67%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-7.491e-01	0.7468	443.0	0.98%	440.2	0.97%
SeqBias: polyC-repeat	CCCCCCCCCC	1e0	-7.265e-01	0.7608	33168.0	73.31%	33163.2	73.30%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-6.935e-01	0.7832	157.0	0.35%	156.1	0.35%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-6.934e-01	0.7832	67.0	0.15%	66.7	0.15%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-6.933e-01	0.7832	47.0	0.10%	46.8	0.10%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-6.932e-01	0.7832	16.0	0.04%	15.2	0.03%
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1e0	-6.932e-01	0.7832	15.0	0.03%	14.8	0.03%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-6.932e-01	0.7832	10.0	0.02%	9.8	0.02%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-6.932e-01	0.7832	4.0	0.01%	4.0	0.01%
DREF/Drosophila-Promoters/Homer	AVYTATCGATAD	1e0	-6.932e-01	0.7832	3.0	0.01%	2.1	0.00%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-6.932e-01	0.7832	2.0	0.00%	1.9	0.00%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-6.932e-01	0.7832	1.0	0.00%	0.6	0.00%
LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer	CARTGGAGCGCRYTTGCATT	1e0	-6.932e-01	0.7832	1.0	0.00%	1.0	0.00%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-6.614e-01	0.7832	300.0	0.66%	300.6	0.66%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-6.340e-01	0.7926	339.0	0.75%	340.6	0.75%
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	1e0	-6.188e-01	0.8017	53.0	0.12%	53.8	0.12%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-6.055e-01	0.8093	150.0	0.33%	151.0	0.33%
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1e0	-5.971e-01	0.8130	31.0	0.07%	31.2	0.07%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-5.865e-01	0.8186	99.0	0.22%	100.6	0.22%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-5.826e-01	0.8186	23.0	0.05%	23.6	0.05%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-5.779e-01	0.8193	84.0	0.19%	85.5	0.19%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-5.760e-01	0.8193	81.0	0.18%	82.7	0.18%
GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer	CCGACAYYTYACGGG	1e0	-5.723e-01	0.8193	19.0	0.04%	19.7	0.04%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-5.570e-01	0.8273	132.0	0.29%	134.7	0.30%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-5.448e-01	0.8344	441.0	0.97%	446.0	0.99%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-5.426e-01	0.8344	1205.0	2.66%	1214.7	2.68%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-5.371e-01	0.8346	1910.0	4.22%	1922.7	4.25%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-5.349e-01	0.8346	42.0	0.09%	43.8	0.10%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-5.296e-01	0.8347	485.0	1.07%	491.1	1.09%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-4.986e-01	0.8579	1342.0	2.97%	1355.8	3.00%
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1e0	-4.932e-01	0.8594	308.0	0.68%	314.2	0.69%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-4.929e-01	0.8594	225.0	0.50%	230.4	0.51%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-4.860e-01	0.8594	208.0	0.46%	213.8	0.47%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-4.808e-01	0.8607	136.0	0.30%	140.1	0.31%
SeqBias: CG-repeat	CGCGCGCGCG	1e0	-4.783e-01	0.8607	3286.0	7.26%	3309.8	7.32%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-4.722e-01	0.8620	179.0	0.40%	185.0	0.41%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-4.717e-01	0.8620	44.0	0.10%	46.6	0.10%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-4.707e-01	0.8620	122.0	0.27%	126.7	0.28%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-4.672e-01	0.8620	813.0	1.80%	825.4	1.82%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-4.608e-01	0.8620	159.0	0.35%	164.9	0.36%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-4.588e-01	0.8620	17.0	0.04%	19.0	0.04%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-4.562e-01	0.8620	67.0	0.15%	70.7	0.16%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-4.473e-01	0.8621	665.0	1.47%	677.8	1.50%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-4.397e-01	0.8657	231.0	0.51%	238.6	0.53%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-4.394e-01	0.8657	362.0	0.80%	371.2	0.82%
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1e0	-4.394e-01	0.8657	1815.0	4.01%	1836.4	4.06%
Unknown5/Drosophila-Promoters/Homer	GCTGATAASV	1e0	-4.383e-01	0.8657	174.0	0.38%	180.9	0.40%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-3.974e-01	0.8907	248.0	0.55%	257.0	0.57%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-3.890e-01	0.8952	36.0	0.08%	39.6	0.09%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-3.831e-01	0.8974	140.0	0.31%	147.7	0.33%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-3.780e-01	0.8990	359.0	0.79%	371.5	0.82%
FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer	HHCACGCGCBTN	1e0	-3.775e-01	0.8990	210.0	0.46%	219.9	0.49%
Unknown2/Arabidopsis-Promoters/Homer	AAACGACGTCGTTTT	1e0	-3.747e-01	0.8990	2.0	0.00%	2.5	0.01%
Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer	RGAGAGAG	1e0	-3.681e-01	0.8990	1840.0	4.07%	1869.7	4.13%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-3.622e-01	0.9010	90.0	0.20%	96.5	0.21%
SeqBias: A/T bias	WWWWWWWWWW	1e0	-3.562e-01	0.9035	9159.0	20.24%	9222.9	20.38%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-3.523e-01	0.9039	1021.0	2.26%	1044.5	2.31%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-3.507e-01	0.9039	924.0	2.04%	946.7	2.09%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-3.496e-01	0.9039	204.0	0.45%	214.8	0.47%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-3.496e-01	0.9039	26.0	0.06%	29.9	0.07%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-3.396e-01	0.9039	55.0	0.12%	60.3	0.13%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-3.191e-01	0.9191	193.0	0.43%	204.8	0.45%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-3.102e-01	0.9244	806.0	1.78%	830.7	1.84%
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	1e0	-3.097e-01	0.9244	19.0	0.04%	22.9	0.05%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-3.086e-01	0.9244	210.0	0.46%	222.9	0.49%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-3.035e-01	0.9244	10.0	0.02%	12.1	0.03%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-2.929e-01	0.9254	4.0	0.01%	5.3	0.01%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-2.929e-01	0.9254	4.0	0.01%	5.1	0.01%
SFP1/SacCer-Promoters/Homer	DDAAAAATTTTY	1e0	-2.900e-01	0.9254	9.0	0.02%	11.9	0.03%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-2.854e-01	0.9265	25.0	0.06%	29.2	0.06%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-2.811e-01	0.9275	600.0	1.33%	623.6	1.38%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-2.789e-01	0.9275	642.0	1.42%	666.1	1.47%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-2.733e-01	0.9288	138.0	0.31%	149.6	0.33%
GAGA-repeat/Arabidopsis-Promoters/Homer	CTCTCTCTCY	1e0	-2.697e-01	0.9293	758.0	1.68%	785.2	1.74%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-2.565e-01	0.9387	144.0	0.32%	156.5	0.35%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-2.495e-01	0.9423	80.0	0.18%	89.7	0.20%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-2.414e-01	0.9470	379.0	0.84%	400.5	0.89%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-2.388e-01	0.9470	655.0	1.45%	683.3	1.51%
RLR1?/SacCer-Promoters/Homer	WTTTTCYYTTTT	1e0	-2.363e-01	0.9470	301.0	0.67%	320.1	0.71%
ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer	AWTGATAAGA	1e0	-2.339e-01	0.9470	87.0	0.19%	97.1	0.21%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-2.336e-01	0.9470	45.0	0.10%	52.7	0.12%
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1e0	-2.330e-01	0.9470	71.0	0.16%	80.6	0.18%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-2.326e-01	0.9470	264.0	0.58%	282.0	0.62%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-2.140e-01	0.9526	958.0	2.12%	995.9	2.20%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-2.076e-01	0.9557	2.0	0.00%	3.7	0.01%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-2.063e-01	0.9557	135.0	0.30%	149.2	0.33%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-2.061e-01	0.9557	906.0	2.00%	943.7	2.09%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-1.994e-01	0.9557	13.0	0.03%	17.8	0.04%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-1.864e-01	0.9645	87.0	0.19%	99.0	0.22%
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	1e0	-1.817e-01	0.9662	7.0	0.02%	10.6	0.02%
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	1e0	-1.791e-01	0.9662	669.0	1.48%	704.1	1.56%
PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer	ACTGATAAGA	1e0	-1.647e-01	0.9769	74.0	0.16%	86.6	0.19%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-1.580e-01	0.9805	951.0	2.10%	997.0	2.20%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-1.545e-01	0.9811	9.0	0.02%	13.6	0.03%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-1.506e-01	0.9820	324.0	0.72%	351.1	0.78%
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	1e0	-1.498e-01	0.9820	77.0	0.17%	90.0	0.20%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-1.453e-01	0.9820	140.0	0.31%	158.4	0.35%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-1.323e-01	0.9914	11.0	0.02%	16.0	0.04%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-1.320e-01	0.9914	281.0	0.62%	308.5	0.68%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-1.305e-01	0.9914	66.0	0.15%	80.0	0.18%
SeqBias: TA-repeat	TATATATATA	1e0	-1.179e-01	0.9970	865.0	1.91%	915.8	2.02%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-1.112e-01	1.0000	786.0	1.74%	835.7	1.85%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-1.026e-01	1.0000	134.0	0.30%	155.2	0.34%
EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer	ATTTAATGGG	1e0	-1.020e-01	1.0000	391.0	0.86%	427.3	0.94%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-1.017e-01	1.0000	20.0	0.04%	28.2	0.06%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-1.007e-01	1.0000	172.0	0.38%	196.5	0.43%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-9.414e-02	1.0000	3.0	0.01%	6.2	0.01%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-9.407e-02	1.0000	5.0	0.01%	9.4	0.02%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-8.804e-02	1.0000	27.0	0.06%	37.2	0.08%
TATA-box/Drosophila-Promoters/Homer	CTATAAAAGCSV	1e0	-8.722e-02	1.0000	7.0	0.02%	12.8	0.03%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-8.168e-02	1.0000	308.0	0.68%	343.6	0.76%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-8.002e-02	1.0000	16.0	0.04%	24.4	0.05%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-7.738e-02	1.0000	106.0	0.23%	127.3	0.28%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-7.581e-02	1.0000	228.0	0.50%	259.9	0.57%
PCF/Arabidopsis-Promoters/Homer	NNWWWTGGGCYTDDN	1e0	-7.280e-02	1.0000	33.0	0.07%	45.3	0.10%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-6.946e-02	1.0000	228.0	0.50%	260.9	0.58%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-6.914e-02	1.0000	22.0	0.05%	32.2	0.07%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-5.920e-02	1.0000	756.0	1.67%	817.1	1.81%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-5.624e-02	1.0000	3.0	0.01%	7.4	0.02%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-5.131e-02	1.0000	40.0	0.09%	55.5	0.12%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-4.169e-02	1.0000	63.0	0.14%	83.6	0.18%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-3.996e-02	1.0000	7.0	0.02%	14.6	0.03%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-3.927e-02	1.0000	121.0	0.27%	149.3	0.33%
KANADI1(Myb)/Seedling-KAN1-ChIP-Seq(GSE48081)/Homer	ARGAATAWWN	1e0	-3.694e-02	1.0000	230.0	0.51%	269.5	0.60%
TATA-box/SacCer-Promoters/Homer	BBHWTATATA	1e0	-2.115e-02	1.0000	88.0	0.19%	116.2	0.26%
PABPC1(?)/MEL-PABC1-CLIP-Seq(GSE69755)/Homer	HAATAAAGNN	1e0	-1.930e-02	1.0000	380.0	0.84%	438.3	0.97%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-1.885e-02	1.0000	554.0	1.22%	624.6	1.38%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-1.741e-02	1.0000	44.0	0.10%	66.0	0.15%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-1.371e-02	1.0000	1825.0	4.03%	1957.3	4.33%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-1.102e-02	1.0000	215.0	0.48%	264.8	0.59%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-1.076e-02	1.0000	112.0	0.25%	148.1	0.33%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-9.605e-03	1.0000	127.0	0.28%	166.1	0.37%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-7.692e-03	1.0000	17.0	0.04%	33.4	0.07%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-6.887e-03	1.0000	113.0	0.25%	152.6	0.34%
Unknown4/Arabidopsis-Promoters/Homer	CKTCKTCTTY	1e0	-2.022e-03	1.0000	333.0	0.74%	410.1	0.91%
Zelda(Zf)/Embryo-zld-ChIP-Seq(GSE65441)/Homer	KBCTACCTGW	1e0	-2.000e-06	1.0000	95.0	0.21%	168.1	0.37%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	0.000e+00	1.0000	0.0	0.00%	0.9	0.00%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
 Ik-1	NHTTGGGAATRCC	1e0	0.000e+00	1.0000	45242.0	100.00%	45244.1	100.00%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	0.000e+00	1.0000	0.0	0.00%	1.9	0.00%