| Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
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| 1 |  | ABF1/SacCer-Promoters/Homer | 1e-201 | -4.644e+02 | 0.0000 | 1339.0 | 35.55% | 3121.7 | 15.39% | motif file (matrix) |
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| 2 |  | REB1/SacCer-Promoters/Homer | 1e-168 | -3.876e+02 | 0.0000 | 838.0 | 22.25% | 1570.3 | 7.74% | motif file (matrix) |
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| 3 |  | RLR1?/SacCer-Promoters/Homer | 1e-67 | -1.547e+02 | 0.0000 | 1777.0 | 47.17% | 6787.6 | 33.46% | motif file (matrix) |
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| 4 |  | SeqBias: CG-repeat | 1e-63 | -1.459e+02 | 0.0000 | 730.0 | 19.38% | 2062.7 | 10.17% | motif file (matrix) |
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| 5 |  | c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer | 1e-57 | -1.313e+02 | 0.0000 | 540.0 | 14.34% | 1392.7 | 6.87% | motif file (matrix) |
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| 6 |  | DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer | 1e-45 | -1.049e+02 | 0.0000 | 990.0 | 26.28% | 3452.8 | 17.02% | motif file (matrix) |
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| 7 |  | bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer | 1e-45 | -1.042e+02 | 0.0000 | 398.0 | 10.57% | 985.9 | 4.86% | motif file (matrix) |
pdf |
| 8 |  | Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer | 1e-44 | -1.017e+02 | 0.0000 | 384.0 | 10.19% | 945.1 | 4.66% | motif file (matrix) |
pdf |
| 9 |  | n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer | 1e-41 | -9.512e+01 | 0.0000 | 599.0 | 15.90% | 1821.6 | 8.98% | motif file (matrix) |
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| 10 |  | CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer | 1e-38 | -8.881e+01 | 0.0000 | 513.0 | 13.62% | 1508.5 | 7.44% | motif file (matrix) |
pdf |
| 11 |  | USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer | 1e-37 | -8.692e+01 | 0.0000 | 442.0 | 11.73% | 1236.4 | 6.09% | motif file (matrix) |
pdf |
| 12 |  | Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer | 1e-35 | -8.134e+01 | 0.0000 | 352.0 | 9.34% | 919.5 | 4.53% | motif file (matrix) |
pdf |
| 13 |  | SFP1/SacCer-Promoters/Homer | 1e-29 | -6.824e+01 | 0.0000 | 535.0 | 14.20% | 1736.1 | 8.56% | motif file (matrix) |
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| 14 |  | E-box/Arabidopsis-Promoters/Homer | 1e-28 | -6.621e+01 | 0.0000 | 478.0 | 12.69% | 1510.6 | 7.45% | motif file (matrix) |
pdf |
| 15 |  | Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer | 1e-28 | -6.620e+01 | 0.0000 | 530.0 | 14.07% | 1730.9 | 8.53% | motif file (matrix) |
pdf |
| 16 |  | Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer | 1e-24 | -5.744e+01 | 0.0000 | 389.0 | 10.33% | 1201.2 | 5.92% | motif file (matrix) |
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| 17 |  | PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer | 1e-24 | -5.610e+01 | 0.0000 | 781.0 | 20.73% | 2944.6 | 14.52% | motif file (matrix) |
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| 18 |  | E-box(bHLH)/Promoter/Homer | 1e-23 | -5.503e+01 | 0.0000 | 123.0 | 3.27% | 226.3 | 1.12% | motif file (matrix) |
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| 19 |  | Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer | 1e-22 | -5.209e+01 | 0.0000 | 129.0 | 3.42% | 253.8 | 1.25% | motif file (matrix) |
pdf |
| 20 |  | E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer | 1e-22 | -5.205e+01 | 0.0000 | 727.0 | 19.30% | 2737.0 | 13.49% | motif file (matrix) |
pdf |
| 21 |  | IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer | 1e-21 | -5.003e+01 | 0.0000 | 1197.0 | 31.78% | 5024.3 | 24.77% | motif file (matrix) |
pdf |
| 22 |  | PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer | 1e-20 | -4.786e+01 | 0.0000 | 846.0 | 22.46% | 3344.4 | 16.49% | motif file (matrix) |
pdf |
| 23 |  | SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer | 1e-19 | -4.395e+01 | 0.0000 | 966.0 | 25.64% | 3973.9 | 19.59% | motif file (matrix) |
pdf |
| 24 |  | TATA-box/SacCer-Promoters/Homer | 1e-18 | -4.358e+01 | 0.0000 | 1655.0 | 43.93% | 7460.9 | 36.78% | motif file (matrix) |
pdf |
| 25 |  | FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer | 1e-17 | -4.048e+01 | 0.0000 | 379.0 | 10.06% | 1287.5 | 6.35% | motif file (matrix) |
pdf |
| 26 |  | KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer | 1e-16 | -3.854e+01 | 0.0000 | 503.0 | 13.35% | 1855.9 | 9.15% | motif file (matrix) |
pdf |
| 27 |  | Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer | 1e-16 | -3.847e+01 | 0.0000 | 946.0 | 25.11% | 3954.5 | 19.49% | motif file (matrix) |
pdf |
| 28 |  | NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer | 1e-16 | -3.707e+01 | 0.0000 | 700.0 | 18.58% | 2787.7 | 13.74% | motif file (matrix) |
pdf |
| 29 |  | TOD6?/SacCer-Promoters/Homer | 1e-14 | -3.418e+01 | 0.0000 | 289.0 | 7.67% | 954.5 | 4.70% | motif file (matrix) |
pdf |
| 30 |  | BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer | 1e-13 | -3.156e+01 | 0.0000 | 1241.0 | 32.94% | 5545.2 | 27.33% | motif file (matrix) |
pdf |
| 31 |  | KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer | 1e-13 | -3.075e+01 | 0.0000 | 230.0 | 6.11% | 733.5 | 3.62% | motif file (matrix) |
pdf |
| 32 |  | MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer | 1e-12 | -2.983e+01 | 0.0000 | 687.0 | 18.24% | 2825.9 | 13.93% | motif file (matrix) |
pdf |
| 33 |  | Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer | 1e-12 | -2.935e+01 | 0.0000 | 259.0 | 6.88% | 866.2 | 4.27% | motif file (matrix) |
pdf |
| 34 |  | Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer | 1e-12 | -2.888e+01 | 0.0000 | 147.0 | 3.90% | 413.0 | 2.04% | motif file (matrix) |
pdf |
| 35 |  | KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer | 1e-12 | -2.821e+01 | 0.0000 | 425.0 | 11.28% | 1614.2 | 7.96% | motif file (matrix) |
pdf |
| 36 |  | SUT1?/SacCer-Promoters/Homer | 1e-11 | -2.733e+01 | 0.0000 | 2624.0 | 69.66% | 13034.9 | 64.25% | motif file (matrix) |
pdf |
| 37 |  | c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer | 1e-11 | -2.566e+01 | 0.0000 | 300.0 | 7.96% | 1078.3 | 5.32% | motif file (matrix) |
pdf |
| 38 |  | ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer | 1e-10 | -2.460e+01 | 0.0000 | 277.0 | 7.35% | 987.9 | 4.87% | motif file (matrix) |
pdf |
| 39 |  | Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer | 1e-10 | -2.449e+01 | 0.0000 | 277.0 | 7.35% | 988.3 | 4.87% | motif file (matrix) |
pdf |
| 40 |  | Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer | 1e-9 | -2.125e+01 | 0.0000 | 117.0 | 3.11% | 340.4 | 1.68% | motif file (matrix) |
pdf |
| 41 |  | BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer | 1e-8 | -1.851e+01 | 0.0000 | 531.0 | 14.10% | 2252.4 | 11.10% | motif file (matrix) |
pdf |
| 42 |  | Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer | 1e-7 | -1.806e+01 | 0.0000 | 138.0 | 3.66% | 447.1 | 2.20% | motif file (matrix) |
pdf |
| 43 |  | GAGA-repeat/Arabidopsis-Promoters/Homer | 1e-7 | -1.788e+01 | 0.0000 | 460.0 | 12.21% | 1920.4 | 9.47% | motif file (matrix) |
pdf |
| 44 |  | PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-7 | -1.708e+01 | 0.0000 | 1247.0 | 33.10% | 5896.3 | 29.07% | motif file (matrix) |
pdf |
| 45 |  | Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer | 1e-7 | -1.707e+01 | 0.0000 | 906.0 | 24.05% | 4146.7 | 20.44% | motif file (matrix) |
pdf |
| 46 |  | EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer | 1e-6 | -1.482e+01 | 0.0000 | 96.0 | 2.55% | 298.6 | 1.47% | motif file (matrix) |
pdf |
| 47 |  | Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer | 1e-5 | -1.376e+01 | 0.0000 | 126.0 | 3.34% | 432.9 | 2.13% | motif file (matrix) |
pdf |
| 48 |  | Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer | 1e-5 | -1.301e+01 | 0.0000 | 738.0 | 19.59% | 3394.9 | 16.73% | motif file (matrix) |
pdf |
| 49 |  | SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer | 1e-5 | -1.280e+01 | 0.0000 | 262.0 | 6.96% | 1059.5 | 5.22% | motif file (matrix) |
pdf |
| 50 |  | SeqBias: TA-repeat | 1e-5 | -1.190e+01 | 0.0001 | 3287.0 | 87.26% | 17193.2 | 84.75% | motif file (matrix) |
pdf |
| 51 |  | FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer | 1e-4 | -1.064e+01 | 0.0002 | 641.0 | 17.02% | 2965.5 | 14.62% | motif file (matrix) |
pdf |
| 52 |  | HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer | 1e-4 | -1.022e+01 | 0.0003 | 1399.0 | 37.14% | 6906.7 | 34.05% | motif file (matrix) |
pdf |
| 53 |  | E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer | 1e-4 | -1.022e+01 | 0.0003 | 158.0 | 4.19% | 612.8 | 3.02% | motif file (matrix) |
pdf |
| 54 |  | Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer | 1e-4 | -9.958e+00 | 0.0003 | 450.0 | 11.95% | 2024.2 | 9.98% | motif file (matrix) |
pdf |
| 55 |  | E2F(E2F)/Hela-CellCycle-Expression/Homer | 1e-4 | -9.860e+00 | 0.0004 | 108.0 | 2.87% | 391.3 | 1.93% | motif file (matrix) |
pdf |
| 56 |  | NRF(NRF)/Promoter/Homer | 1e-4 | -9.772e+00 | 0.0004 | 86.0 | 2.28% | 296.1 | 1.46% | motif file (matrix) |
pdf |
| 57 |  | HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer | 1e-4 | -9.604e+00 | 0.0005 | 622.0 | 16.51% | 2897.6 | 14.28% | motif file (matrix) |
pdf |
| 58 |  | CRE(bZIP)/Promoter/Homer | 1e-4 | -9.515e+00 | 0.0005 | 172.0 | 4.57% | 686.9 | 3.39% | motif file (matrix) |
pdf |
| 59 |  | p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer | 1e-4 | -9.402e+00 | 0.0005 | 63.0 | 1.67% | 202.9 | 1.00% | motif file (matrix) |
pdf |
| 60 |  | p53(p53)/Saos-p53-ChIP-Seq/Homer | 1e-4 | -9.402e+00 | 0.0005 | 63.0 | 1.67% | 202.9 | 1.00% | motif file (matrix) |
pdf |
| 61 |  | E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer | 1e-3 | -9.209e+00 | 0.0006 | 99.0 | 2.63% | 358.4 | 1.77% | motif file (matrix) |
pdf |
| 62 |  | Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer | 1e-3 | -8.824e+00 | 0.0009 | 1153.0 | 30.61% | 5665.3 | 27.93% | motif file (matrix) |
pdf |
| 63 |  | RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer | 1e-3 | -8.645e+00 | 0.0011 | 453.0 | 12.03% | 2071.8 | 10.21% | motif file (matrix) |
pdf |
| 64 |  | PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer | 1e-3 | -8.394e+00 | 0.0014 | 192.0 | 5.10% | 797.5 | 3.93% | motif file (matrix) |
pdf |
| 65 |  | HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer | 1e-3 | -8.092e+00 | 0.0018 | 405.0 | 10.75% | 1845.5 | 9.10% | motif file (matrix) |
pdf |
| 66 |  | TATA-box/Drosophila-Promoters/Homer | 1e-3 | -8.014e+00 | 0.0019 | 185.0 | 4.91% | 770.7 | 3.80% | motif file (matrix) |
pdf |
| 67 |  | AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-3 | -7.690e+00 | 0.0026 | 536.0 | 14.23% | 2516.7 | 12.41% | motif file (matrix) |
pdf |
| 68 |  | ETS(ETS)/Promoter/Homer | 1e-3 | -7.638e+00 | 0.0027 | 298.0 | 7.91% | 1325.6 | 6.53% | motif file (matrix) |
pdf |
| 69 |  | PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer | 1e-3 | -7.317e+00 | 0.0037 | 436.0 | 11.57% | 2021.7 | 9.97% | motif file (matrix) |
pdf |
| 70 |  | ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer | 1e-3 | -7.087e+00 | 0.0046 | 481.0 | 12.77% | 2256.0 | 11.12% | motif file (matrix) |
pdf |
| 71 |  | Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer | 1e-3 | -6.946e+00 | 0.0052 | 478.0 | 12.69% | 2244.7 | 11.06% | motif file (matrix) |
pdf |
| 72 |  | NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer | 1e-2 | -6.827e+00 | 0.0058 | 39.0 | 1.04% | 122.3 | 0.60% | motif file (matrix) |
pdf |
| 73 |  | ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer | 1e-2 | -6.715e+00 | 0.0064 | 41.0 | 1.09% | 131.1 | 0.65% | motif file (matrix) |
pdf |
| 74 |  | Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer | 1e-2 | -6.674e+00 | 0.0066 | 1455.0 | 38.62% | 7351.5 | 36.24% | motif file (matrix) |
pdf |
| 75 |  | GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer | 1e-2 | -6.672e+00 | 0.0066 | 682.0 | 18.10% | 3297.7 | 16.26% | motif file (matrix) |
pdf |
| 76 |  | Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-2 | -6.450e+00 | 0.0081 | 162.0 | 4.30% | 687.6 | 3.39% | motif file (matrix) |
pdf |
| 77 |  | Sp1(Zf)/Promoter/Homer | 1e-2 | -6.443e+00 | 0.0081 | 46.0 | 1.22% | 154.9 | 0.76% | motif file (matrix) |
pdf |
| 78 |  | CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer | 1e-2 | -5.982e+00 | 0.0125 | 38.0 | 1.01% | 124.5 | 0.61% | motif file (matrix) |
pdf |
| 79 |  | Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer | 1e-2 | -5.982e+00 | 0.0125 | 171.0 | 4.54% | 739.6 | 3.65% | motif file (matrix) |
pdf |
| 80 |  | PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer | 1e-2 | -5.952e+00 | 0.0126 | 74.0 | 1.96% | 282.6 | 1.39% | motif file (matrix) |
pdf |
| 81 |  | ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer | 1e-2 | -5.830e+00 | 0.0140 | 671.0 | 17.81% | 3272.9 | 16.13% | motif file (matrix) |
pdf |
| 82 |  | Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer | 1e-2 | -5.590e+00 | 0.0176 | 185.0 | 4.91% | 815.5 | 4.02% | motif file (matrix) |
pdf |
| 83 |  | NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer | 1e-2 | -5.471e+00 | 0.0196 | 33.0 | 0.88% | 107.1 | 0.53% | motif file (matrix) |
pdf |
| 84 |  | E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer | 1e-2 | -5.371e+00 | 0.0214 | 222.0 | 5.89% | 1002.7 | 4.94% | motif file (matrix) |
pdf |
| 85 |  | Unknown3/Arabidopsis-Promoters/Homer | 1e-2 | -5.343e+00 | 0.0218 | 451.0 | 11.97% | 2158.1 | 10.64% | motif file (matrix) |
pdf |
| 86 |  | GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer | 1e-2 | -5.268e+00 | 0.0232 | 39.0 | 1.04% | 134.5 | 0.66% | motif file (matrix) |
pdf |
| 87 |  | Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer | 1e-2 | -5.072e+00 | 0.0279 | 342.0 | 9.08% | 1612.7 | 7.95% | motif file (matrix) |
pdf |
| 88 |  | ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer | 1e-2 | -4.873e+00 | 0.0336 | 43.0 | 1.14% | 155.3 | 0.77% | motif file (matrix) |
pdf |
| 89 |  | NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer | 1e-2 | -4.743e+00 | 0.0379 | 53.0 | 1.41% | 202.0 | 1.00% | motif file (matrix) |
pdf |