PLINK v1.90b6.6 64-bit (10 Oct 2018)
Options in effect:
  --bfile 1kg_phase3_all
  --ld-snp rs4932265
  --out rs4932265.txt
  --r
  --threads 10

Hostname: nandi
Working directory: /srv/www/kundaje/annashch/humbio51
Start time: Wed Nov 28 12:17:15 2018

Random number seed: 1543436235
257844 MB RAM detected; reserving 128922 MB for main workspace.
18470 variants loaded from .bim file.
2504 people (0 males, 0 females, 2504 ambiguous) loaded from .fam.
Ambiguous sex IDs written to rs4932265.txt.nosex .
Using up to 10 threads (change this with --threads).
Before main variant filters, 2504 founders and 0 nonfounders present.
Calculating allele frequencies... done.
18470 variants and 2504 people pass filters and QC.
Note: No phenotypes present.
Error: No valid variants specified by --ld-snp/--ld-snps/--ld-snp-list.

End time: Wed Nov 28 12:17:15 2018